genome.fa.s7759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007759.1 Hibiscus syriacus cultivar Beakdansim tig00110027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  284512

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3828--3931	33	3.1	33	82	9	95	30	36	1	30	1.69
6407--6589	91	2.0	91	90	0	285	28	23	28	19	1.98
8373--8402	13	2.4	13	94	5	53	43	0	30	26	1.55
17611--17661	23	2.2	24	89	3	77	62	11	17	7	1.51
20402--20431	13	2.4	13	94	5	53	43	0	30	26	1.55
23210--23258	11	4.2	12	75	19	50	28	2	36	32	1.69
23209--23288	35	2.2	37	88	4	119	28	2	36	32	1.71
23627--23682	20	2.8	20	97	0	103	41	7	14	37	1.73
26784--26821	20	2.0	20	84	5	51	2	15	5	76	1.08
27269--27348	35	2.2	37	91	4	128	27	3	37	31	1.74
30707--30765	1	59.0	1	86	0	73	91	5	3	0	0.50
33604--33640	15	2.4	16	90	4	58	13	10	5	70	1.32
35991--36022	9	3.4	9	91	8	55	87	12	0	0	0.54
35968--36022	17	3.3	16	78	9	58	83	10	5	0	0.79
39438--39490	11	4.7	11	79	11	63	1	11	9	77	1.07
39431--39487	22	2.7	21	89	5	87	1	12	10	75	1.12
55011--55060	17	3.2	17	75	21	63	14	8	14	64	1.50
55084--55121	11	3.8	10	90	10	60	0	7	7	84	0.79
55072--55122	11	4.6	11	80	7	59	0	9	7	82	0.85
56178--56237	11	5.7	10	81	13	59	78	5	13	3	1.04
61024--61066	18	2.4	18	84	7	61	0	9	11	79	0.95
61024--61065	20	2.2	19	87	8	59	0	9	9	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61673--62953	640	2.0	640	92	1	2129	37	17	14	30	1.89
64737--64774	20	2.0	20	89	5	60	5	13	5	76	1.13
65224--65303	35	2.2	37	91	4	128	27	3	37	31	1.74
84240--84283	22	2.0	22	82	8	54	56	11	18	13	1.66
85437--85489	27	1.9	28	84	3	72	15	13	13	58	1.64
92103--92182	35	2.3	33	83	10	90	31	37	2	28	1.71
96291--96359	33	2.1	33	83	5	86	31	1	36	30	1.67
105298--105357	30	2.0	31	83	3	77	55	10	8	26	1.61
112048--112128	40	2.0	40	95	0	144	22	14	19	43	1.88
116896--116948	23	2.2	24	90	3	81	9	16	11	62	1.54
118142--118210	33	2.1	33	83	5	86	31	1	36	30	1.67
123820--123888	33	2.1	33	83	5	86	31	1	36	30	1.67
128762--128802	21	2.0	21	85	9	57	2	9	9	78	1.06
128777--128822	16	2.9	15	87	12	65	2	8	10	78	1.05
128775--128830	16	3.5	16	78	11	62	1	7	10	80	0.97
129672--129740	33	2.1	33	86	5	95	31	0	36	31	1.58
134141--134209	33	2.1	33	83	5	86	31	1	36	30	1.67
136485--136535	19	2.6	20	90	3	77	43	5	15	35	1.71
137243--137282	20	2.0	21	85	5	55	50	12	17	20	1.78
139874--139956	11	7.9	10	68	15	51	4	14	3	77	1.08
139889--139920	10	3.1	11	86	13	50	0	15	0	84	0.63
139905--139956	19	2.7	19	80	11	61	3	17	3	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140677--140727	19	2.6	20	90	3	77	43	5	15	35	1.71
146960--147365	225	1.8	222	85	4	566	36	8	28	26	1.86
149731--149773	23	1.9	21	81	13	50	34	13	18	32	1.90
151065--151107	22	2.0	22	85	0	59	11	13	13	60	1.59
153927--153978	20	2.6	20	85	8	70	32	13	5	48	1.66
155816--155865	18	2.9	17	76	23	59	80	2	18	0	0.82
155815--155873	27	2.2	27	79	11	68	81	1	15	1	0.86
155816--155883	35	2.0	34	83	13	86	79	2	14	2	0.97
160826--160895	35	2.0	35	97	0	131	30	17	22	30	1.97
161192--161271	35	2.2	37	91	4	128	27	3	37	31	1.74
163525--163575	20	2.6	20	90	3	77	35	15	5	43	1.71
164433--164459	14	1.9	14	100	0	54	37	25	14	22	1.93
167574--167611	14	2.6	15	79	8	51	2	15	5	76	1.08
169434--169476	19	2.3	19	95	0	77	39	9	25	25	1.85
170859--170938	35	2.3	33	83	10	90	31	37	2	28	1.71
175328--175407	35	2.3	33	83	10	90	31	37	2	28	1.71
179800--179879	35	2.3	33	83	10	90	31	37	2	28	1.71
191863--191931	33	2.1	33	83	5	86	31	1	36	30	1.67
202939--202980	21	2.0	21	100	0	84	33	23	9	33	1.87
228580--228609	13	2.4	13	94	5	53	26	30	0	43	1.55
235502--235527	9	2.9	9	100	0	52	19	23	0	57	1.40
238910--238934	12	2.1	12	100	0	50	16	8	36	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241702--241748	16	2.8	16	81	12	51	68	0	17	14	1.22
242361--242431	35	2.0	37	91	5	119	32	4	32	30	1.77
244907--244949	13	3.3	13	86	0	59	86	9	4	0	0.71
252747--252775	15	2.0	15	93	6	51	0	20	3	75	0.94
252770--252827	28	2.1	27	83	3	71	10	15	13	60	1.59
263669--263770	36	2.9	36	92	1	170	28	4	35	31	1.78
268151--268266	36	3.2	36	91	1	189	28	3	37	30	1.74
280200--280249	14	3.9	13	73	21	52	78	2	20	0	0.86
280194--280249	19	3.1	18	82	17	71	78	1	19	0	0.84
280194--280249	11	4.7	11	74	21	51	78	1	19	0	0.84

Tables:   1

The End!