Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007760.1 Hibiscus syriacus cultivar Beakdansim tig00110029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2010226
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 8
Found at i:1522980 original size:23 final size:23
Alignment explanation
Indices: 1522917--1522981 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
1522907 ATACTTTACA
* *
1522917 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
1522940 ATATAAACGATACTTATTACATT
1 ATATAAACGCTACCTATTACATT
*
1522963 ATATAAGCGCTACCTATTA
1 ATATAAACGCTACCTATTA
1522982 TATCAGATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:1523192 original size:427 final size:427
Alignment explanation
Indices: 1522336--1524582 Score: 2170
Period size: 427 Copynumber: 5.0 Consensus size: 427
1522326 TTTAATTTAA
*
1522336 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCT
1 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
*
1522401 TAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTTCACAGTGAAAAAAGTAT-GTACACTT
66 TAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAG-ACACTT
* * *
1522465 TTATAAAAATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTAT
130 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
1522530 TACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTT
195 TACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTT
1522595 TTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTG
260 TTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTG
*
1522660 TTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGT
325 TTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGT
*
1522725 TTTGATATTTTATAAAATAATATTTAGAATTTTTAATT
390 TTTGATATTTTATAAAATAATATTTAGAATTTTAAATT
1522763 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
1 TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
*
1522828 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTT
66 TAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTT
*
1522893 TATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACTTATT
131 TATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
* *
1522958 ACATTATATAAGCGCTACCTATTATATCAGATTTTTACCTATTATATTGAAAGTGTCCATACTTT
196 ACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTT
* * *
1523023 TTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTTAATTTTTTTTAATAGCG
261 TTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTG
*
1523088 TTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGT
325 TTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGT
1523153 TTTGATATTTTATAAAATAATATTTAGAA-TTTAAATT
390 TTTGATATTTTATAAAATAATATTTAGAATTTTAAATT
* * * * * ** *
1523190 TAACAATAT-TAAC-CAAAGATAATAATAAATATGTAAT-ATATATGTTTATTGTTTTTAATTTA
1 TAATAATATATATCGTAACG-T-A-AA-AAATA---AATCAT-TA-G---A-CGCCTATAA-TTA
* * * * * * * *
1523252 ATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCGTATAA-TTACTAAATTAATAT
52 CT-A-AAT-TA-A---TATC-TTAAAACTCACTCA--A-A--AG-ATAACCT--TAAATTAATAT
* * * * * * * * * ** * * * *
1523316 CTT-AAAACTCACTCAAAAGATAACCTTAAATTAATGTTT-TTCACAGTGAAAAAAGTA-TGTAC
101 TTTCCACAGTGA--AAAAAG-T-A---TAGA-CACT-TTTATAAAAAG-G-ATAGA-TACTTTAC
* * ** * ** * *
1523378 ACTTTTATAAAAAGGATAGATACTTTACA--ATATAAGC-ACTACCTATTACATTATATAAACGC
154 A-ATATA-A-CCA--CTACCTA--TTACATTATATAAACGA-TACCTATTACATTATATAAGCGC
1523440 TACCTATTACATTATATAAGCGCTACCTATTACATTATATTTTTACCTATTATATTGAAAGTGTC
211 TA-C-----C----TAT------TA-C-A-T-C---ATATTTTTACCTATTATATTGAAAGTGTC
1523505 CATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTT
253 CATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTT
* *
1523570 AATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCGCAAAAAA--ATT
318 AATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATT
*
1523633 TGATTGTTTTGATA-TTTATAAAATAATATTTAGAATTTTTAATTT
383 TGATTGTTTTGATATTTTATAAAATAATATTTAGAA-TTTTAAATT
*
1523678 AATAATAATATATATCGTAACGTAAAAACTAAATCATTAGACGCCTATAATTACTAAATTAATAT
1 --TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
* *
1523743 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACATTTAAAAAAGTATAGACACT
64 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACT
*
1523808 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACATA
129 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
1523873 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACT
194 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACT
*
1523938 TTTTATAAAAAAAGATCGATACTT-TTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATA
259 TTTTAT-AAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATA
1524002 GTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGAT
322 GTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGAT
1524067 TGTTTTGATATTTTATAAAATAATATTTAGAA-TTTAAATT
387 TGTTTTGATATTTTATAAAATAATATTTAGAATTTTAAATT
* * * * * ** *
1524107 TAACAATAT-TAAC-CAAAGATAATAATAAATATGTAAT-ATATATGTTTATTGTTTTTAATTTA
1 TAATAATATATATCGTAACG-T-A-AA-AAATA---AATCAT-TA-G---A-CGCCTATAA-TTA
* * * * * * * *
1524169 ATAGTAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAA-TTACTAAATTAATAT
52 CTA--AAT-TA-A---TATC-TTAAAACTCACTCA--A-AAG---ATAACCT--TAAATTAATAT
* * * * * * * * * ** * * * **
1524233 CTT-AAAACTCACTCAAAAGATAACCTTAAATTAATGTTT-TCCACAGTGAAAAAAGTA-TGGAC
101 TTTCCACAGTGA--AAAAAG-T-A---TAGA-CACT-TTTATAAAAAG-G-ATAGA-TACTTTAC
* * * ** ** ** * * *
1524295 ACTTTCATAAAAAGGATAGATACTTTACAATATAA-GCACTACCTATTACATTATATAAGCGCTA
154 AATATAACCACTA-CCTA-TTACATTA-TATA-AACG-A-TACCTATTACATTATATAAGCGCTA
*
1524359 CCTATTACATCATATTTTTACCTATTATAATGAAAGTGTCCATACTTTTTATAAAAAGGATCGAT
213 CCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGAT
1524424 ACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCT
278 ACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCT
1524489 ACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAA
342 ACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAA
1524554 TAATATTTAGAA-TTTAAATT
407 TAATATTTAGAATTTTAAATT
*
1524574 TAACAATAT
1 TAATAATAT
1524583 TAACCAAAGA
Statistics
Matches: 1517, Mismatches: 160, Indels: 246
0.79 0.08 0.13
Matches are distributed among these distances:
425 6 0.00
426 8 0.01
427 391 0.26
428 191 0.13
429 16 0.01
430 18 0.01
431 26 0.02
432 11 0.01
433 3 0.00
434 2 0.00
436 2 0.00
437 10 0.01
438 9 0.01
439 1 0.00
440 9 0.01
441 4 0.00
442 2 0.00
444 1 0.00
445 6 0.00
446 20 0.01
448 7 0.00
449 4 0.00
450 34 0.02
451 4 0.00
452 17 0.01
453 26 0.02
454 15 0.01
455 10 0.01
456 6 0.00
457 6 0.00
458 3 0.00
459 6 0.00
460 12 0.01
461 9 0.01
462 21 0.01
463 14 0.01
464 20 0.01
465 13 0.01
466 22 0.01
467 263 0.17
468 2 0.00
469 6 0.00
471 10 0.01
472 3 0.00
473 1 0.00
475 1 0.00
476 2 0.00
477 6 0.00
478 1 0.00
479 4 0.00
480 5 0.00
481 1 0.00
483 2 0.00
484 1 0.00
485 6 0.00
486 24 0.02
487 18 0.01
488 11 0.01
489 65 0.04
490 93 0.06
491 4 0.00
492 3 0.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (427 bp):
TAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCT
TAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATAGACACTTT
TATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATT
ACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTT
TTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGT
TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTT
TTGATATTTTATAAAATAATATTTAGAATTTTAAATT
Found at i:1523288 original size:917 final size:931
Alignment explanation
Indices: 1522087--1526184 Score: 5808
Period size: 917 Copynumber: 4.4 Consensus size: 931
1522077 TTATAATATG
1522087 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
1522152 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
1522217 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
1522282 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
* *
1522347 ATCGTAACGTAAAAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* * *
1522412 CAAAAGATAACCTTAAATTAATATTTTTCACAGTGAAAAAAGTATGTACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
1522477 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
1522542 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
456 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
1522607 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
521 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
*
1522672 CACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTA
586 CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
* * * * *
1522737 TAAAATAATATTTAGAATTTTTAATTTAATAATATATATCGTAACG-T-A-AA-AAATA-AATCA
651 TAAAATAATATTTAGAA-TTTAAATTTAACAATAT-TAAC-CAAAGATAATAATAAATATAAT-A
* * * *
1522797 T-TA-G-A-CGCCTATAA-TTACTAAATTA-ATATC-TTAAAACTCACTCA-A-AAG-ATAACCT
712 TATATGTATCGCCTATAATTTAATAAATTATATATCGTTAAAAATAAATCATAGAAGCATAA-CT
* * *
1522852 -TAAATTAATGTTTTCCACAGTGA-AAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTA
776 ATAAATTAATATTTTCCAAAGTAACAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTA
*
1522915 CAATATAACCACTACCTATTACATTA-TAT-AAACGATACTTATTACATTATATAAGCGCTACCT
841 CAATATAACCACTACCTATTACATTATTATAAAACGATACCTATTACATTATATAAGCGCTACCT
* *
1522978 ATTATATCAGATTTTTACCTATTATA
906 ATTACATCATATTTTTACCTATTATA
1523004 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
* * *
1523069 TTAATTTTTTTTAATAGCGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
1523134 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
1523199 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
1523264 ACCGTAACGTAAAAAATAAATCATTAGACGCGTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* * *
1523329 CAAAAGATAACCTTAAATTAATGTTTTTCACAGTGAAAAAAGTATGTACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
1523394 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
*
1523459 GCGCTACCTATTACATTATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
456 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
1523524 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
521 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
* *
1523589 CACCTACAATATTAATTTAATAATTTCATTTGCGCAAAAAA--ATTTGATTGTTTTGATA-TTTA
586 CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
* * * * **
1523651 TAAAATAATATTTAGAATTTTTAATTTAATAATAATATA-TATCG-TAACGTAA-AAACTA-AAT
651 TAAAATAATATTTAGAA-TTTAAATTTAACAATATTA-ACCAAAGATAA--TAATAAA-TATAAT
* * * *
1523712 CAT-TA-G-A-CGCCTATAA-TTACTAAATTA-ATATC-TTAAAACTCACTCA-A-AAG-ATAAC
711 -ATATATGTATCGCCTATAATTTAATAAATTATATATCGTTAAAAATAAATCATAGAAGCATAA-
* * *
1523767 CT-TAAATTAATATTTTCCACATTTA-AAAAAGTATAGACACTTTTATAAAAAGGATAGATACTT
774 CTATAAATTAATATTTTCCAAAGTAACAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTT
*
1523830 TACAATATAACCACTACCTATTACATTA-TAT-AAACGATACATATTACATTATATAAGCGCTAC
839 TACAATATAACCACTACCTATTACATTATTATAAAACGATACCTATTACATTATATAAGCGCTAC
1523893 CTATTACATCATATTTTTACCTATTATA
904 CTATTACATCATATTTTTACCTATTATA
*
1523921 TTGAAAGTGTCCATACTTTTTATAAAAAAAGATCGATAC-TTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTAT-AAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1523985 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
1524050 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
*
1524115 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAGTAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
1524180 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
* *
1524245 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTCATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
1524310 ATAGATACTTTACAATATAAG------------C---------A--CTACCTATTACATTATATA
390 ATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATA
*
1524352 AGCGCTACCTATTACATCATATTTTTACCTATTATAATGAAAGTGTCCATACTTTTTATAAAAAG
455 AGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAG
1524417 GATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTT
520 GATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTT
1524482 TCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTT
584 TCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTT
1524547 TATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATA
649 TATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATA--TAATA
* ** * * * *
1524612 TATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGAC
712 TATATG--TATCGCCTATAATTTAAT-A-AAT-TATA---TATCGTTAAAAATAAATCA-TAGAA
*
1524677 GCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCC
768 G-C-ATAACTA-TAAATTAATAT-TT-----T--C-C-AAAG-TAA-C----A--AA--------
*
1524742 ACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATAC-TTACAATATAAGCACTACCTA
804 A-AGT------A-TA--GACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTA
*
1524806 TTACATTA-TAT-AAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTAC
859 TTACATTATTATAAAACGATACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTAC
1524869 CTATTATA
924 CTATTATA
*
1524877 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
1524942 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
1525007 CAAAAAATTATTTGATTGTTTTGATA-TTTAT-AAA-AATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
1525069 TAACCAAAGATAATAATAAATATGTAATGTATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
1525134 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
1525199 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
1525264 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
391 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
1525329 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
456 GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
1525394 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
521 ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
1525459 CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
586 CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
1525524 TAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATA
651 TAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATA--TAATATA
* ** * * *
1525589 TATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGC
714 TATG--TATCGCCTATAATTTAATAA-ATTATATATCGT----T-AAAAATAAATCA-TAGAAG-
* ***
1525654 CTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGT-TTTCCA
769 C-ATAACTA-TAAATTAATAT-TT-----T--C-C-AAAG-TAA-C--AAA--AA-GTATAGACA
** * * * * * * * * *
1525718 CAATGA-AAAAAGTATGGACACTTTTATAAAAAGGATAGA-TACTTTACAATATAAGCACTAGCT
815 CTTTTATAAAAAGGATAGATAC--TT-T-ACAA-TATA-ACCAC--TAC-CTATTA-CA-T---T
* * * *
1525781 ATTACATTATA-TAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTAC
866 ATT--ATAAAACGATAC-C----TATTACATTATATAAGCGCTACCTATTACATCATATTTTTAC
1525845 CTATTATA
924 CTATTATA
*
1525853 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1525918 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
1525982 TAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
1526047 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
1526112 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
1526177 CAAAAGAT
326 CAAAAGAT
1526185 GTATATACCT
Statistics
Matches: 2953, Mismatches: 93, Indels: 209
0.91 0.03 0.06
Matches are distributed among these distances:
894 122 0.04
895 65 0.02
896 7 0.00
897 38 0.01
898 26 0.01
899 5 0.00
900 1 0.00
903 1 0.00
904 5 0.00
905 5 0.00
906 1 0.00
907 3 0.00
908 2 0.00
909 1 0.00
912 8 0.00
913 13 0.00
914 38 0.01
915 18 0.01
916 7 0.00
917 1209 0.41
918 15 0.01
919 4 0.00
920 11 0.00
921 2 0.00
926 1 0.00
928 1 0.00
929 1 0.00
930 2 0.00
931 2 0.00
937 1 0.00
939 2 0.00
947 1 0.00
948 3 0.00
953 239 0.08
954 16 0.01
955 26 0.01
956 227 0.08
957 28 0.01
958 1 0.00
959 3 0.00
960 5 0.00
961 1 0.00
962 3 0.00
963 4 0.00
964 3 0.00
965 5 0.00
968 2 0.00
969 1 0.00
970 5 0.00
971 6 0.00
972 3 0.00
973 6 0.00
974 3 0.00
975 330 0.11
976 247 0.08
977 3 0.00
978 165 0.06
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (931 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
CAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
GCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGG
ATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTC
CACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTA
TAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATAATATATA
TGTATCGCCTATAATTTAATAAATTATATATCGTTAAAAATAAATCATAGAAGCATAACTATAAA
TTAATATTTTCCAAAGTAACAAAAAGTATAGACACTTTTATAAAAAGGATAGATACTTTACAATA
TAACCACTACCTATTACATTATTATAAAACGATACCTATTACATTATATAAGCGCTACCTATTAC
ATCATATTTTTACCTATTATA
Found at i:1523442 original size:23 final size:23
Alignment explanation
Indices: 1523407--1523479 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
1523397 ATACTTTACA
*
1523407 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1523430 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
1523453 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
1523476 ATAT
1 ATAT
1523480 TTTTACCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:1523831 original size:20 final size:20
Alignment explanation
Indices: 1523788--1523830 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
1523778 ATTTTCCACA
*
1523788 TTTAAAAAAGTATAGACACT
1 TTTAAAAAAGGATAGACACT
*
1523808 TTTATAAAAAGGATAGATACT
1 TTTA-AAAAAGGATAGACACT
1523829 TT
1 TT
1523831 ACAATATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.35
Consensus pattern (20 bp):
TTTAAAAAAGGATAGACACT
Found at i:1523874 original size:23 final size:23
Alignment explanation
Indices: 1523848--1523906 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
1523838 AACCACTACC
1523848 TATTACATTATATAAACGATACA
1 TATTACATTATATAAACGATACA
* * *
1523871 TATTACATTATATAAGCGCTACC
1 TATTACATTATATAAACGATACA
*
1523894 TATTACATCATAT
1 TATTACATTATAT
1523907 TTTTACCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (23 bp):
TATTACATTATATAAACGATACA
Found at i:1524354 original size:23 final size:23
Alignment explanation
Indices: 1524324--1524373 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
1524314 ATACTTTACA
*
1524324 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATC
*
1524347 ATATAAGCGCTACCTATTACATC
1 ATATAAGCACTACCTATTACATC
1524370 ATAT
1 ATAT
1524374 TTTTACCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATC
Found at i:1524744 original size:467 final size:470
Alignment explanation
Indices: 1523871--1526184 Score: 3919
Period size: 489 Copynumber: 4.8 Consensus size: 470
1523861 AAACGATACA
1523871 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
*
1523936 CTTTTTATAAAAAAAGATCGATACTT-TTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAA
66 CTTTTTAT-AAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAA
1524000 TAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTG
130 TAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTG
1524065 ATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAAT
195 ATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAAT
*
1524130 AATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAGTAATATATACCGTAACGTAAAA
260 AATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAA
1524195 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
325 AATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTT
*
1524260 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTCATAAAAAGGATAGATACTTTACAA
390 AAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAA
1524325 TATAAG-C-A-CTACC
455 TATAAGTCAACCTACC
*
1524338 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAATGAAAGTGTCCATA
1 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1524403 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
66 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
1524468 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
131 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
1524533 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
196 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
1524598 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
261 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
1524663 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
326 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
1524728 AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATAC-TTACAAT
391 AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAAT
1524792 ATAAGCACTACCTATTACATTATATAAACGCTACC
456 ATAAG----------T-C--------AAC-CTACC
1524827 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1524892 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
66 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
*
1524957 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGA
131 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
1525022 TTGTTTTGATA-TTTAT-AAA-AATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
196 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
*
1525084 ATAAATATGTAATGTATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
261 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
1525149 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
326 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
*
1525214 AATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAAT
391 AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAAT
1525279 ATAAGCACTACCTATTACATTATATAAACGCTACC
456 ATAAG----------T-C--------AAC-CTACC
1525314 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1525379 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAAT
66 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
1525443 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
131 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
1525508 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
196 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
*
1525573 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAA
261 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
1525638 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
326 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
*
1525703 AATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAAT
391 AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAAT
1525768 ATAAGCACTAGCTATTACATTATATAAACGCTACC
456 AT----A--AG----T-C--------AAC-CTACC
1525803 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1 TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
1525868 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAAT
66 CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
*
1525932 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACATAAAAAATTATTTGA
131 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
1525997 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
196 TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
1526062 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
261 ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
1526127 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGAT
326 ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGAT
1526185 GTATATACCT
Statistics
Matches: 1798, Mismatches: 15, Indels: 46
0.97 0.01 0.02
Matches are distributed among these distances:
466 28 0.02
467 426 0.24
478 1 0.00
486 313 0.17
487 170 0.09
488 8 0.00
489 849 0.47
493 1 0.00
495 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (470 bp):
TATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATA
CTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
TTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATA
ATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAA
ATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTA
AATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAAT
ATAAGTCAACCTACC
Found at i:1524825 original size:23 final size:23
Alignment explanation
Indices: 1524790--1524862 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1524780 GATACTTACA
*
1524790 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1524813 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1524836 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
1524859 ATAT
1 ATAT
1524863 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:1525312 original size:23 final size:23
Alignment explanation
Indices: 1525277--1525349 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
1525267 ATACTTTACA
*
1525277 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1525300 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1525323 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
1525346 ATAT
1 ATAT
1525350 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:1525754 original size:975 final size:957
Alignment explanation
Indices: 1523668--1526184 Score: 4598
Period size: 975 Copynumber: 2.6 Consensus size: 957
1523658 ATATTTAGAA
*
1523668 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAACTAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
* * *
1523733 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACATTTAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAG
* *
1523798 TATAGACACTTTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAA
131 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
* *
1523863 ACGATACATATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
*
1523928 TGTCCATACTTTTTATAAAAAAAGATCGATACTT-TTTTAAAGTTATGTAATTTATGTTTCAATT
261 TGTCCATACTTTTTAT-AAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATT
1523992 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
325 TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAA
1524057 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCA
390 ATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCA
*
1524122 AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAGTAATATATACCGTA
455 AAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTA
1524187 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
520 ACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAG
*
1524252 ATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTCATAAAAAGGATAGATA
585 ATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTCATAAAAAGGATAGATA
1524317 CTTTACAATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCT
650 CTTTACAATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCT
1524382 ATTATAATGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATT
715 ATTATAATGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATT
1524447 TATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
780 TATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
1524512 TTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAA
845 TTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAA
1524577 CAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTG
910 CAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTG
*
1524625 TTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
*
1524690 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAG
1524755 TATGGACACTTTTATAAAAAGGATAGATAC-TTACAATATAAGCACTACCTATTACATTATATAA
131 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
1524819 ACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
1524884 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
1524949 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
1525014 TTATTTGATTGTTTTGATA-TTTAT-AAA-AATATTTAGAATTTAAATTTAACAATATTAACCAA
391 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAA
*
1525076 AGATAATAATAAATATGTAATGTATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAA
456 AGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAA
1525141 CGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGA
521 CGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGA
*
1525206 TAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATAC
586 TAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTCATAAAAAGGATAGATAC
1525271 TTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCGCTAC
651 TTTACAATATAAG------------C---------A--CTACCTATTACATTATATAAGCGCTAC
*
1525336 CTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATA
693 CTATTACATCATATTTTTACCTATTATAATGAAAGTGTCCATACTTTTTATAAAAAGGATCGATA
1525401 CTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTA
758 CTTCTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTA
1525465 CAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAAT
823 CAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAAT
1525530 AATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTT
888 AATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTT
1525595 TATTG
953 TATTG
1525600 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1 TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
1525665 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAG
66 AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAG
*
1525730 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTAGCTATTACATTATATAA
131 TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
1525795 ACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
196 ACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
1525860 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAA-TT
261 TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
*
1525924 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACATAAAAAA
326 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
1525989 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAA
391 TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAA
1526054 AGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAA
456 AGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAA
1526119 CGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGA
521 CGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGA
1526184 T
586 T
1526185 GTATATACCT
Statistics
Matches: 1510, Mismatches: 22, Indels: 35
0.96 0.01 0.02
Matches are distributed among these distances:
953 239 0.16
954 3 0.00
955 21 0.01
956 226 0.15
957 154 0.10
965 1 0.00
974 1 0.00
975 409 0.27
976 288 0.19
977 3 0.00
978 165 0.11
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.40
Consensus pattern (957 bp):
TTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACT
AAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAG
TATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAA
ACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATATTGAAAG
TGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
TTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAA
AGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAA
CGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGA
TAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTCATAAAAAGGATAGATAC
TTTACAATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTA
TTATAATGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAATTT
ATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
TTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAAC
AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTG
Found at i:1525791 original size:21 final size:23
Alignment explanation
Indices: 1525766--1525838 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
1525756 ATACTTTACA
* *
1525766 ATATAAGCACTAGCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1525789 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
1525812 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
1525835 ATAT
1 ATAT
1525839 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:1526212 original size:25 final size:25
Alignment explanation
Indices: 1526184--1526248 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
1526174 ACTCAAAAGA
*
1526184 TGTATATACCTAAATATATAGTTAT
1 TGTACATACCTAAATATATAGTTAT
*
1526209 TGTACATACCTAAATATGTAGTTAT
1 TGTACATACCTAAATATATAGTTAT
1526234 TGTACATACCTAAAT
1 TGTACATACCTAAAT
1526249 TTAATGATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (25 bp):
TGTACATACCTAAATATATAGTTAT
Found at i:1529021 original size:183 final size:183
Alignment explanation
Indices: 1528713--1529704 Score: 1731
Period size: 183 Copynumber: 5.4 Consensus size: 183
1528703 TTAAAATTAC
1528713 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1528778 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCAGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
*
1528843 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
1528896 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1528961 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTTGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
* *
1529026 ATATTACAAAATTATGTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
*
1529079 CGACACTTTTTGACAAT--TATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
* *
1529142 TATTAAAAAGTGTTGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGT
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGT
*
1529207 TATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATGT
130 TATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
1529261 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1529326 ATTAAAAAGTGTTGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
*
1529391 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
*
1529444 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1529509 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
* *
1529574 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTTTTTTCAA--T
131 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATG---TGTAAATGT
* *
1529628 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACAGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1529693 ATTAAAAAGTGT
66 ATTAAAAAGTGT
1529705 GAAAACTTTG
Statistics
Matches: 779, Mismatches: 24, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
181 3 0.00
182 170 0.22
183 523 0.67
184 79 0.10
186 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (183 bp):
CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
Found at i:1529203 original size:365 final size:365
Alignment explanation
Indices: 1528713--1529704 Score: 1729
Period size: 365 Copynumber: 2.7 Consensus size: 365
1528703 TTAAAATTAC
1528713 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
1528778 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCAGTATATTTATACCGGTT
65 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
*
1528843 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
130 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
*
1528908 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAGAAAGTGT
195 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
**
1528973 CGATATAGGTTGTAGACCTATTTGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
260 CGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
*
1529038 TATGTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
325 TATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
1529079 CGACACTTTTTGACAAT-TATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTA-AATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* * *
1529143 ATTAAAAAGTGTTGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTT
65 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
*
1529208 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATGTCGACACTTTTTT
130 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
1529273 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
195 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
*
1529338 TGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
260 CGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
* *
1529403 TATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATGT
325 TATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
1529444 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
*
1529509 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTTATACCGGTT
65 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
* *
1529574 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTTTTTTCAA--TCGACACTTT
130 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATG---TGTAAATGTCGACACTTT
* *
1529637 TTTAAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACAGACACAATATTAAAAAG
192 TTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAAAAAG
1529702 TGT
257 TGT
1529705 GAAAACTTTG
Statistics
Matches: 595, Mismatches: 25, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
364 3 0.01
365 347 0.58
366 162 0.27
367 79 0.13
369 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (365 bp):
CGACACTTTTTTAAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATA
TTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTA
TATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTTA
AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAAAAAGTGTC
GATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATT
ATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:1529521 original size:548 final size:547
Alignment explanation
Indices: 1528713--1529704 Score: 1772
Period size: 548 Copynumber: 1.8 Consensus size: 547
1528703 TTAAAATTAC
1528713 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1528778 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCAGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAAAACCAGTATATTTATACCGGTT
1528843 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
131 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
1528908 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAGAAAGTGT
196 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAGAAAGTGT
*
1528973 CGATATAGGTTGTAGACCTATTTGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
261 CGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
*
1529038 TATGTATTACATTATAATTATGGGTTCCGATG-TGTAAATGTCGACACTTTTTGACAAT-TATCG
326 TATCTATTACATTATAATTATGGGTTCCGATGTTGTAAA--TCGACACTTTTTGA-AATGTATCG
*
1529101 ACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAAAAAGTGTTGATATAGGTT
388 ACACATTTTTCTTCCAATCTGGACATAAAGTACAGACACAATATTAAAAAGTGTTGATATAGGTT
1529166 GTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACA
453 GTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACA
1529231 TTATAATTCTGGGTTCCGATTTGTAAATGT
518 TTATAATTCTGGGTTCCGATTTGTAAATGT
1529261 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* *
1529326 ATTAAAAAGTGTTGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAAAACCAGTATATTTATACCGGTT
* *
1529391 ATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATTTGTAAATGTCGACACTTTTTT
131 ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
*
1529456 AAATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATATTAGAAAGTGT
196 AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAGAAAGTGT
*
1529521 CGATATAGGTTGTAGACCTATTCGCTCATAAAACTGGTATATTTATACCGGTTATATTACAAAAT
261 CGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
* * * *
1529586 TATCTATTACATTATAATTCTGGGTTCCGATGTTTTTTCAATCGACACTTTTTTAAATGGTATCG
326 TATCTATTACATTATAATTATGGGTTCCGATG--TTGTAAATCGACACTTTTTGAAAT-GTATCG
*
1529651 ACACATTTTTCTTCCATTCTGGACATAAAGTACAGACACAATATTAAAAAGTGT
388 ACACATTTTTCTTCCAATCTGGACATAAAGTACAGACACAATATTAAAAAGTGT
1529705 GAAAACTTTG
Statistics
Matches: 423, Mismatches: 16, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
548 349 0.83
549 13 0.03
550 57 0.13
551 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (547 bp):
CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAAAACCAGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGTCGACACTTTTTT
AAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAATATTAGAAAGTGT
CGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAAT
TATCTATTACATTATAATTATGGGTTCCGATGTTGTAAATCGACACTTTTTGAAATGTATCGACA
CATTTTTCTTCCAATCTGGACATAAAGTACAGACACAATATTAAAAAGTGTTGATATAGGTTGTA
GACCTATTCACTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTA
TAATTCTGGGTTCCGATTTGTAAATGT
Found at i:1531542 original size:24 final size:24
Alignment explanation
Indices: 1531498--1531544 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1531488 ATAAAGAACC
*
1531498 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
1531522 AAAATAAAGTTTAAACA-ACCATT
1 AAAATAAA-CTTAAACATACCATT
1531545 CAACCAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:1534872 original size:26 final size:26
Alignment explanation
Indices: 1534843--1534909 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
1534833 AATGAAAGAG
* *
1534843 AGAGAAAAGTTAAAAGTTAAA-ATGAA
1 AGAGAAAAGTTAAAA-TGAAAGATAAA
*
1534869 AGAGAAAAATTAATAATGAAAGATAAA
1 AGAGAAAAGTTAA-AATGAAAGATAAA
1534896 AGA-AAAAGTTAAAA
1 AGAGAAAAGTTAAAA
1534910 ATTTGGGAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 2 0.06
26 24 0.69
27 9 0.26
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (26 bp):
AGAGAAAAGTTAAAATGAAAGATAAA
Found at i:1534876 original size:19 final size:20
Alignment explanation
Indices: 1534854--1534897 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1534844 GAGAAAAGTT
1534854 AAAAGTTAA-AATGAAAGAG
1 AAAAGTTAATAATGAAAGAG
* *
1534873 AAAAATTAATAATGAAAGAT
1 AAAAGTTAATAATGAAAGAG
1534893 AAAAG
1 AAAAG
1534898 AAAAAGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (20 bp):
AAAAGTTAATAATGAAAGAG
Found at i:1541789 original size:24 final size:24
Alignment explanation
Indices: 1541745--1541791 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1541735 ATAAAGAACC
*
1541745 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
1541769 AAAATAAAGTTTAAACA-ACCATT
1 AAAATAAA-CTTAAACATACCATT
1541792 CAACCAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:1542870 original size:3 final size:3
Alignment explanation
Indices: 1542862--1542942 Score: 63
Period size: 3 Copynumber: 27.0 Consensus size: 3
1542852 ACTTGTTTGG
* * * * * *
1542862 ATC ATC ATC ATC ATC ATC ATC GTC GTC GTC GTC ATC ATC TTC ATC GTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * *
1542910 AGC TTC ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1542943 GTCAGCTTCA
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:1542879 original size:12 final size:12
Alignment explanation
Indices: 1542862--1542946 Score: 89
Period size: 12 Copynumber: 7.1 Consensus size: 12
1542852 ACTTGTTTGG
*
1542862 ATCATCATCATC
1 ATCATCATCGTC
1542874 ATCATCATCGTC
1 ATCATCATCGTC
* * * *
1542886 GTCGTCGTCATC
1 ATCATCATCGTC
*
1542898 ATCTTCATCGTC
1 ATCATCATCGTC
* *
1542910 AGCTTCATCGTC
1 ATCATCATCGTC
1542922 ATCATCATCGTC
1 ATCATCATCGTC
*
1542934 ATCTTCATCGTC
1 ATCATCATCGTC
1542946 A
1 A
1542947 GCTTCATCTT
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 60 1.00
ACGTcount: A:0.21, C:0.33, G:0.11, T:0.35
Consensus pattern (12 bp):
ATCATCATCGTC
Found at i:1542908 original size:18 final size:19
Alignment explanation
Indices: 1542866--1542959 Score: 81
Period size: 18 Copynumber: 5.2 Consensus size: 19
1542856 GTTTGGATCA
* *
1542866 TCATCATCA-TCATCATCG
1 TCATCGTCAGTCATCATCT
*
1542884 TCGTCGTC-GTCATCATCT
1 TCATCGTCAGTCATCATCT
* *
1542902 TCATCGTCAG-CTTCATCG
1 TCATCGTCAGTCATCATCT
* *
1542920 TCATCATCA-TCGTCATCT
1 TCATCGTCAGTCATCATCT
*
1542938 TCATCGTCAG-CTTCATCT
1 TCATCGTCAGTCATCATCT
1542956 TCAT
1 TCAT
1542960 GACCGTTTGG
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
18 60 0.98
19 1 0.02
ACGTcount: A:0.19, C:0.33, G:0.11, T:0.37
Consensus pattern (19 bp):
TCATCGTCAGTCATCATCT
Found at i:1542951 original size:12 final size:12
Alignment explanation
Indices: 1542900--1542954 Score: 83
Period size: 12 Copynumber: 4.6 Consensus size: 12
1542890 TCGTCATCAT
1542900 CTTCATCGTCAG
1 CTTCATCGTCAG
*
1542912 CTTCATCGTCAT
1 CTTCATCGTCAG
* *
1542924 CATCATCGTCAT
1 CTTCATCGTCAG
1542936 CTTCATCGTCAG
1 CTTCATCGTCAG
1542948 CTTCATC
1 CTTCATC
1542955 TTCATGACCG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.18, C:0.35, G:0.11, T:0.36
Consensus pattern (12 bp):
CTTCATCGTCAG
Found at i:1542957 original size:6 final size:6
Alignment explanation
Indices: 1542896--1542959 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
1542886 GTCGTCGTCA
* * * * * *
1542896 TCATCT TCATCG TCAGCT TCATCG TCATCA TCATCG TCATCT TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
*
1542944 TCAGCT TCATCT TCAT
1 TCATCT TCATCT TCAT
1542960 GACCGTTTGG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:1544385 original size:200 final size:199
Alignment explanation
Indices: 1544035--1545195 Score: 1762
Period size: 200 Copynumber: 5.9 Consensus size: 199
1544025 TTTAAATTAG
* *
1544035 TATCGAAACAAACTAAAAAAGTGTTGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1544100 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTTGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTT-GGTTTTGATGTTTTTGGGA
1544165 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
130 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
1544230 AAAAA
195 AAAAA
1544235 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* * * *
1544300 CTTGTACCGGTTAGATT-CAAAATATACATATTACATTATACTTTTGATTTTCGATGTTTCTGCG
66 CTTGTACCGGTTAGATTGAAAAAT-TACATATTACATTATACTTTTGGTTTT-GATGTTTTTGGG
1544364 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
129 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
1544429 CAAAAA
194 CAAAAA
*
1544435 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAATCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1544500 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTT-GATGTTTTTGGGA
1544565 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
130 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
1544630 AAAAA
195 AAAAA
*
1544635 TATCGACACAAACTAAAAAAGTGTCGACACATTATTCAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
1544700 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTGGGTTTTGATGTTTTTGGGAT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTGATGTTTTTGGGAT
1544765 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
1544830 AAAA
196 AAAA
1544834 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1544899 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC------TTTTG--G---TT---AT
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTGATGTTTTTGGGAT
* * * ** * *
1544950 CGACACTTTTTATATATGGATCGACAC-TTTAT-GGTTGCAC-CCTGT-TTTCCATTCATTC--T
131 CGACACTTTTTATATATGGATCG--ACACTT-TATGGT-TGCACC-CTGTTT---TCCATTCATT
* ** *
1545009 -GGACCAAAAATA
188 CTGGACCAAAA-A
*
1545021 TCGA-C-ACA-AAC-TAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 T--ATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
* * *
1545082 TACTTGTATCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTTTTCAATGTTTTTGG
64 TACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTT-GATGTTTTTGG
* *
1545147 GATCGACACTTTTTATATATGGTTCGACACTTTATTGTTGCACCCTGTT
128 GATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
1545196 GGCCATATTG
Statistics
Matches: 890, Mismatches: 38, Indels: 67
0.89 0.04 0.07
Matches are distributed among these distances:
185 116 0.13
186 17 0.02
187 11 0.01
188 3 0.00
189 7 0.01
191 5 0.01
193 5 0.01
194 1 0.00
197 2 0.00
198 5 0.01
199 205 0.23
200 508 0.57
201 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (199 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTGATGTTTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCA
AAAA
Found at i:1545075 original size:185 final size:185
Alignment explanation
Indices: 1544763--1545132 Score: 722
Period size: 185 Copynumber: 2.0 Consensus size: 185
1544753 TGTTTTTGGG
1544763 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
1 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
1544828 CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
66 CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
*
1544893 GGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTT
131 GGTATACTTGTACCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTT
1544948 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
1 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
1545013 CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
66 CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
*
1545078 GGTATACTTGTATCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTT
131 GGTATACTTGTACCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTT
1545133 TTCAATGTTT
Statistics
Matches: 183, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
185 183 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (185 bp):
ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
CAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACC
GGTATACTTGTACCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTT
Found at i:1545143 original size:584 final size:591
Alignment explanation
Indices: 1544035--1545195 Score: 2086
Period size: 584 Copynumber: 2.0 Consensus size: 591
1544025 TTTAAATTAG
* *
1544035 TATCGAAACAAACTAAAAAAGTGTTGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGAAACAAACTAAAAAAGTGTCGACACATTATTCAGACATATTCTCTCATAAAACCGGTATA
1544100 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTTGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTTGATGTTTTTGGGA
1544165 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
1544230 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
196 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
*
1544295 GTATACTTGTACCGGTTAGATTCAAAATATACATATTACATTATACTTTTGATTTTCGATGTTTC
261 GTATACTTGTACCGGTTAGATTAAAAATATACATATTACATTATAC---T--TTTTCGA-G-TTC
1544360 TGCGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCT
319 T--GATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCT
1544425 GGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAA
382 GGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAA
* * *
1544490 AATCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGAT
447 AACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTTTTCAAT
1544555 GTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTC
512 GTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTC
1544620 ATTCTGGACCAAAAA
577 ATTCTGGACCAAAAA
*
1544635 TATCGACACAAACTAAAAAAGTGTCGACACATTATTCAGACATATTCTCTCATAAAACCGGTATA
1 TATCGAAACAAACTAAAAAAGTGTCGACACATTATTCAGACATATTCTCTCATAAAACCGGTATA
1544700 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTTTGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTTGATGTTTTTGGGA
1544764 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
1544829 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
196 AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
1544894 GTATACTTGTACCGGTTAGATTGAAAAAT-TACATATTACATTATAC-TTTT-G-G-T-T-ATCG
261 GTATACTTGTACCGGTTAGATT-AAAAATATACATATTACATTATACTTTTTCGAGTTCTGATCG
1544952 ACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAAA
325 ACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAAA
1545017 AATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
390 AATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
*
1545082 TACTTGTATCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTTTTCAATGTTTTTGG
455 TACTTGTACCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTTTTCAATGTTTTTGG
* *
1545147 GATCGACACTTTTTATATATGGTTCGACACTTTATTGTTGCACCCTGTT
520 GATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
1545196 GGCCATATTG
Statistics
Matches: 550, Mismatches: 10, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
584 242 0.44
587 1 0.00
588 1 0.00
590 1 0.00
592 1 0.00
593 4 0.01
599 192 0.35
600 108 0.20
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (591 bp):
TATCGAAACAAACTAAAAAAGTGTCGACACATTATTCAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTTTGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
AAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCG
GTATACTTGTACCGGTTAGATTAAAAATATACATATTACATTATACTTTTTCGAGTTCTGATCGA
CACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAAAA
ATATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTAT
ACTTGTACCGGTTAGATTGAAAAATTACATATAACATTATACTTTTGGTTTTCAATGTTTTTGGG
ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
CAAAAA
Found at i:1547182 original size:33 final size:33
Alignment explanation
Indices: 1547145--1547210 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
1547135 CATCTTAATA
*
1547145 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
1547178 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
1547211 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:1547269 original size:21 final size:21
Alignment explanation
Indices: 1547244--1547308 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
1547234 CCCCTTATGC
* *
1547244 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
1547265 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
1547286 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
1547307 CT
1 CT
1547309 TTATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:1549369 original size:24 final size:24
Alignment explanation
Indices: 1549332--1549384 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
1549322 CCGTTCTATC
1549332 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
1549356 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
1549380 TATTT
1 TATTT
1549385 AATCAATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:1549546 original size:17 final size:18
Alignment explanation
Indices: 1549524--1549566 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
1549514 ATATATCCGG
1549524 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
1549541 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
1549561 TATCAT
1 TATCAT
1549567 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:1549584 original size:20 final size:19
Alignment explanation
Indices: 1549529--1549575 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
1549519 TCCGGTATCA
1549529 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
1549548 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
1549569 TTTTACC
1 TTTTACC
1549576 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:1549800 original size:181 final size:182
Alignment explanation
Indices: 1549496--1549968 Score: 707
Period size: 181 Copynumber: 2.6 Consensus size: 182
1549486 CGTACTTACG
* * *
1549496 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
1549561 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACGTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACGTTAT
* *
1549626 AGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* *
1549677 AAAGTATCGACACTTTTAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGATTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
1549742 TATCATATTTTTATCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACGTTAT
** * *
1549807 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCTTTATATT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * *
1549859 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCATTTCT-ATACCGGTT
1 AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTT-TGATACCGGTT
* * *
1549923 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
65 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
1549969 AATTTGGATC
Statistics
Matches: 263, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
181 164 0.62
182 98 0.37
183 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.43
Consensus pattern (182 bp):
AAAGTATCGACACTTTAAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACGTTAT
AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:1553266 original size:60 final size:60
Alignment explanation
Indices: 1553152--1553269 Score: 139
Period size: 60 Copynumber: 2.0 Consensus size: 60
1553142 TATAGTCGGG
* * * * *
1553152 TGACCAATTTGTAACTTTTAATAGTCGATGGACTCAACAAATCAACATCTTATAGTCAAA
1 TGACCAATTTATAACTTTTAATAGTCGATGGACTCAAAAAAACAACACCCTATAGTCAAA
* * * *
1553212 TGACCATTTTATAACTTTTTATAGTCGA-GAGACTTAAAAAAACATCACCCTATAGTCA
1 TGACCAATTTATAACTTTTAATAGTCGATG-GACTCAAAAAAACAACACCCTATAGTCA
1553270 GTGGATCATT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
59 1 0.02
60 47 0.98
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (60 bp):
TGACCAATTTATAACTTTTAATAGTCGATGGACTCAAAAAAACAACACCCTATAGTCAAA
Found at i:1554942 original size:32 final size:32
Alignment explanation
Indices: 1554836--1554926 Score: 137
Period size: 32 Copynumber: 2.8 Consensus size: 32
1554826 AAGTCGGTGG
**
1554836 AGTCAATATCATATCGATCAATTTTTAGTTTA
1 AGTCAATATCATATCGATCAATTTTTAAATTA
* **
1554868 AGTCAATATCAAATCGATTGATTTTTAAATTA
1 AGTCAATATCATATCGATCAATTTTTAAATTA
1554900 AGTCAATATCATATCGATCAATTTTTA
1 AGTCAATATCATATCGATCAATTTTTA
1554927 CACCGAGTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (32 bp):
AGTCAATATCATATCGATCAATTTTTAAATTA
Found at i:1556971 original size:149 final size:149
Alignment explanation
Indices: 1556701--1557000 Score: 573
Period size: 149 Copynumber: 2.0 Consensus size: 149
1556691 TTAGTAGTAT
1556701 ATTGCTAATCTAAATTATATGTCATGAATCTTATAAACATAAAAATGTTACCAGAAATAACAATA
1 ATTGCTAATCTAAATTATATGTCATGAATCTTATAAACATAAAAATGTTACCAGAAATAACAATA
* *
1556766 AGCAGTAAGTACATACATGATTCATAAATCCAAATACTATTTGCTTAACTTTCATCATATTTACT
66 AGAAGTAAGTACATACATGATTCATAAATCCAAATACTATCTGCTTAACTTTCATCATATTTACT
1556831 TCATAATAGTATTAGTTTC
131 TCATAATAGTATTAGTTTC
*
1556850 ATTGCTAATCTAAATTATATGTCATGAATCTTATAAACATAAAAATGTTAGCAGAAATAACAATA
1 ATTGCTAATCTAAATTATATGTCATGAATCTTATAAACATAAAAATGTTACCAGAAATAACAATA
1556915 AGAAGTAAGTACATACATGATTCATAAATCCAAATACTATCTGCTTAACTTTCATCATATTTACT
66 AGAAGTAAGTACATACATGATTCATAAATCCAAATACTATCTGCTTAACTTTCATCATATTTACT
1556980 TCATAATAGTATTAGTTTC
131 TCATAATAGTATTAGTTTC
1556999 AT
1 AT
1557001 GCTTTCCCAT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 148 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.36
Consensus pattern (149 bp):
ATTGCTAATCTAAATTATATGTCATGAATCTTATAAACATAAAAATGTTACCAGAAATAACAATA
AGAAGTAAGTACATACATGATTCATAAATCCAAATACTATCTGCTTAACTTTCATCATATTTACT
TCATAATAGTATTAGTTTC
Found at i:1560360 original size:30 final size:30
Alignment explanation
Indices: 1560326--1560386 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
1560316 TGACATGTTA
*
1560326 ACTTAGTTCACAATGCTT-TTACCTTAGCTC
1 ACTTACTTCAC-ATGCTTATTACCTTAGCTC
** *
1560356 ACTTACTTTGCATGCTTATTCCCTTAGCTC
1 ACTTACTTCACATGCTTATTACCTTAGCTC
1560386 A
1 A
1560387 TGGCATTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.21, C:0.28, G:0.10, T:0.41
Consensus pattern (30 bp):
ACTTACTTCACATGCTTATTACCTTAGCTC
Found at i:1566573 original size:59 final size:59
Alignment explanation
Indices: 1566474--1566602 Score: 143
Period size: 59 Copynumber: 2.2 Consensus size: 59
1566464 CAACAAGCTG
*** * **
1566474 CATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTGGGCAC-ACCCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGAACAGATGGTGAACACGA-CCTTATGTGT
* ** *
1566533 CATATTCGGGACTGTACTTAAGGATACCTAGAACAGATGGTGAACACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGAACAGATGGTGAACACGACCTTATGTGT
*
1566592 CATACTCGGGA
1 CATATTCGGGA
1566603 TTGCATTACG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 57 0.98
60 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (59 bp):
CATATTCGGGAATACACTAAAGGATACCTAGAACAGATGGTGAACACGACCTTATGTGT
Found at i:1576751 original size:8 final size:8
Alignment explanation
Indices: 1576738--1576763 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
1576728 GGCCAGAACA
1576738 CCCAAAAC
1 CCCAAAAC
1576746 CCCAAAAC
1 CCCAAAAC
1576754 CCCAAAAC
1 CCCAAAAC
1576762 CC
1 CC
1576764 TTCCGCCGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00
Consensus pattern (8 bp):
CCCAAAAC
Found at i:1577109 original size:17 final size:18
Alignment explanation
Indices: 1577083--1577120 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
1577073 AAATTTTAAA
* *
1577083 TTTTCGAAATTTTTTTGT
1 TTTTCGAAATTATTGTGT
1577101 TTTTC-AAATTATTGTGT
1 TTTTCGAAATTATTGTGT
1577118 TTT
1 TTT
1577121 GATTAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.18, C:0.05, G:0.11, T:0.66
Consensus pattern (18 bp):
TTTTCGAAATTATTGTGT
Found at i:1578959 original size:19 final size:19
Alignment explanation
Indices: 1578935--1578974 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
1578925 GAAGTGTAAG
*
1578935 TGTGTTTTAAAATTATAAA
1 TGTGTTTTAAAATGATAAA
1578954 TGTGTTTTAAAATGATAAA
1 TGTGTTTTAAAATGATAAA
1578973 TG
1 TG
1578975 GGAGAAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTGTTTTAAAATGATAAA
Found at i:1579962 original size:15 final size:15
Alignment explanation
Indices: 1579942--1579970 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1579932 TAACATATTT
1579942 GGTTTAGATAACGAG
1 GGTTTAGATAACGAG
1579957 GGTTTAGATAACGA
1 GGTTTAGATAACGA
1579971 AAAAGAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (15 bp):
GGTTTAGATAACGAG
Found at i:1580571 original size:24 final size:23
Alignment explanation
Indices: 1580528--1580577 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
1580518 TTTTAAAACA
*
1580528 TTTTGGATGTTTTGGATTGATATG
1 TTTTGGATGTTTTGAATTGA-ATG
1580552 TTTTGGATG-TTTGAACTTGAATG
1 TTTTGGATGTTTTGAA-TTGAATG
1580575 TTT
1 TTT
1580578 ATATATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.18, C:0.02, G:0.26, T:0.54
Consensus pattern (23 bp):
TTTTGGATGTTTTGAATTGAATG
Found at i:1582988 original size:24 final size:24
Alignment explanation
Indices: 1582956--1583001 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
1582946 GCATGATATG
1582956 GTACATAGATGTTTTATACATCGT
1 GTACATAGATGTTTTATACATCGT
*
1582980 GTACATAGATGTTTTCTACATC
1 GTACATAGATGTTTTATACATC
1583002 ATCTGGAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCGT
Found at i:1583813 original size:7 final size:7
Alignment explanation
Indices: 1583805--1583836 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
1583795 TTCCCTACTG
*
1583805 TTCACTG
1 TTCACTA
1583812 TTCACTA
1 TTCACTA
1583819 TTCACTA
1 TTCACTA
1583826 TTCACTA
1 TTCACTA
1583833 TTCA
1 TTCA
1583837 TAAAAAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.03, T:0.44
Consensus pattern (7 bp):
TTCACTA
Found at i:1584834 original size:64 final size:62
Alignment explanation
Indices: 1584763--1584968 Score: 182
Period size: 64 Copynumber: 3.2 Consensus size: 62
1584753 CTAAGAGTGT
1584763 ATCGATGCATGAAGTGCATTCGATGTTTGAAAAATATCCTGGTGCATCGATGCATGGATTGTGC
1 ATCGATGCATGAA-TGCATTCGATGTTT-AAAAATATCCTGGTGCATCGATGCATGGATTGTGC
* * * * **
1584827 ATCGATGCATTAAATGCATTCGATGTTTTAATTAA-AT-CAGAGTGCATCGATGCATGAAGAGTG
1 ATCGATGCA-TGAATGCATTCGATG-TTTAA-AAATATCCTG-GTGCATCGATGCATGGATTGTG
1584890 C
62 C
* * ** * *
1584891 ATCGGTGCATGGAATGCATTCGATGTTTCAATTTATTCATTGATGCATCGATGCATGGTATTGAT
1 ATCGATGCAT-GAATGCATTCGATGTTTAAAAATA-TC-CTGGTGCATCGATGCATGG-ATTG-T
1584956 GC
61 GC
*
1584958 ATCGGTGCATG
1 ATCGATGCATG
1584969 CTTTTGAAAA
Statistics
Matches: 113, Mismatches: 18, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
63 8 0.07
64 66 0.58
65 22 0.19
66 4 0.04
67 13 0.12
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (62 bp):
ATCGATGCATGAATGCATTCGATGTTTAAAAATATCCTGGTGCATCGATGCATGGATTGTGC
Found at i:1584889 original size:19 final size:19
Alignment explanation
Indices: 1584865--1584901 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1584855 TAATTAAATC
1584865 AGAGTGCATCGATGCATGA
1 AGAGTGCATCGATGCATGA
*
1584884 AGAGTGCATCGGTGCATG
1 AGAGTGCATCGATGCATG
1584902 GAATGCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.16, G:0.35, T:0.22
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGA
Found at i:1584953 original size:21 final size:21
Alignment explanation
Indices: 1584929--1584968 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1584919 CAATTTATTC
1584929 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGGT
*
1584950 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
1584969 CTTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:1584975 original size:21 final size:21
Alignment explanation
Indices: 1584929--1584975 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
1584919 CAATTTATTC
*
1584929 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGCT
*
1584950 ATTGATGCATCGGTGCATGCT
1 ATTGATGCATCGATGCATGCT
*
1584971 TTTGA
1 ATTGA
1584976 AAAATTGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGCT
Found at i:1591785 original size:139 final size:139
Alignment explanation
Indices: 1591535--1592010 Score: 660
Period size: 139 Copynumber: 3.5 Consensus size: 139
1591525 CAAGCCAAGT
* * *
1591535 TTGAATAAGTTCTTCTCATTATGAAATTATTCTCCCTCATC-AAGTGAGTTATTCTCATTATGAA
1 TTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCATCGGA-TGAGTTCTTCTCATTATGAA
** * *
1591599 CTCTCCACTGGAAATAATGATCCCTCGAGTGAGGTGTTGGTGATTCAACTACATATGCGATGAAT
65 CTCTCCACTGGAAATGTTGATCCCTCGAGTGAGGTGTTGCTGATTCAACTCCATATGCGATGAAT
1591664 CGAGCTAAAG
130 CGAGCTAAAG
* * * *
1591674 TTGAATAAGTTCTTCTCATTATGAACTTTTTCTTCCTTATCGGATAAGTTCTTCTCATTATGAAC
1 TTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCATCGGATGAGTTCTTCTCATTATGAAC
* * * * * * *
1591739 TCTCCCCTGGACATGTTGATCCTTTGAGTGAGGTATTGCTGATTCAACTCCATATACGATAAATC
66 TCTCCACTGGAAATGTTGATCCCTCGAGTGAGGTGTTGCTGATTCAACTCCATATGCGATGAATC
*
1591804 GAGCTAAGG
131 GAGCTAAAG
*
1591813 TTGACTAAGTTCTTCTCATTATGAACTTATTCTCCCTCATCGGATGAGTTCTTCTCATTATGAAC
1 TTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCATCGGATGAGTTCTTCTCATTATGAAC
* *
1591878 TCTCCACTGGAAATGTTGATCCCTCGAGTGAGGTGTTGTTGATTCAACTCCATATGTGATGAATC
66 TCTCCACTGGAAATGTTGATCCCTCGAGTGAGGTGTTGCTGATTCAACTCCATATGCGATGAATC
1591943 GAGCT-AA-
131 GAGCTAAAG
* * * *
1591950 --G-AT-AGTTCTTCTCATTATGAACTTTTTCTCCCTCATCTGATGGGTTCTTCTCGTTATGAAC
1 TTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCATCGGATGAGTTCTTCTCATTATGAAC
1592011 CCTTTTATTG
Statistics
Matches: 297, Mismatches: 39, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
133 54 0.18
134 1 0.00
135 1 0.00
138 1 0.00
139 239 0.80
140 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (139 bp):
TTGAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCATCGGATGAGTTCTTCTCATTATGAAC
TCTCCACTGGAAATGTTGATCCCTCGAGTGAGGTGTTGCTGATTCAACTCCATATGCGATGAATC
GAGCTAAAG
Found at i:1593087 original size:109 final size:108
Alignment explanation
Indices: 1592670--1593226 Score: 670
Period size: 109 Copynumber: 5.1 Consensus size: 108
1592660 TGAATCAAAA
* * *
1592670 GAAATTTGTTTGAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACTATCTCAA
1 GAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAA
*
1592735 GAGAGACAAAACTTTGTTTCAGGAGAAACTGTCTCAAGAGAGAC
66 GAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
* * * * * *
1592779 AAAATTTGTTTCAAGTGAAACTATCTCAAGAGACACAAAATTTGTTTAAAGGGAAACTGTCTCAA
1 GAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAA
* ** * *
1592844 GGGAGATGAAATTTGTTTCAAGTGAAACTGTCTTAAGAGAGAC
66 GAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
* * * * * * * * *
1592887 AAAATTTGTTTCAAGGGAAACTGTCTCAGGAAAGATAAAACTTGTTTCAAGGGAAACTGTATTAA
1 GAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAA
* * * *
1592952 GAGAGACAAAATTTGTTTCAAGAGAAATTGTCTTAAGGGAGAT
66 GAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
* * * *
1592995 GAAATTTCTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTTATTTCAAGAGAAACTGTTTCA
1 GAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCA
* *
1593060 AGGGAGACAAAATTTGTTTCAAAAGAAACTGTCTCAAG-GAAGAC
65 AGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAG-AGAC
* * * *
1593104 GAAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGATGAAATTTTCTTTCAAG-GAAAACTGTCTC
1 GAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGA-CAAAATTTGTTTCAAGAG-AAACTGTCTC
*
1593168 AAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGAGGGAC
64 AAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
*
1593214 AAAAGTTT-TTTCA
1 GAAA-TTTGTTTCA
1593227 CGGGAAACAT
Statistics
Matches: 383, Mismatches: 58, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
108 157 0.41
109 183 0.48
110 39 0.10
111 4 0.01
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (108 bp):
GAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAA
GAGAGACAAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
Found at i:1593117 original size:21 final size:21
Alignment explanation
Indices: 1593053--1593118 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
1593043 CAAGAGAAAC
* *
1593053 TGTTTCAAGGGAGACAAAATT
1 TGTTTCAAGGAAGACGAAATT
*
1593074 TGTTTC-A--AA-A-GAAA-C
1 TGTTTCAAGGAAGACGAAATT
*
1593089 TGTCTCAAGGAAGACGAAATT
1 TGTTTCAAGGAAGACGAAATT
1593110 TGTTTCAAG
1 TGTTTCAAG
1593119 AGAAACTGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
15 5 0.15
16 4 0.12
17 1 0.03
18 3 0.09
19 1 0.03
20 5 0.15
21 14 0.42
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (21 bp):
TGTTTCAAGGAAGACGAAATT
Found at i:1593234 original size:36 final size:36
Alignment explanation
Indices: 1592671--1593234 Score: 657
Period size: 36 Copynumber: 15.6 Consensus size: 36
1592661 GAATCAAAAG
* * *
1592671 AAATTTGTTTGAAGAGAAACTGTCTCAAGGGAGACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* *
1592707 AAATTTGTTTCAAGAGAAACTATCTCAAGAGAGACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
1592743 AAACTTTGTTTC-AGGAGAAACTGTCTCAAGAGAGACA
1 AAA-TTTGTTTCAAGG-GAAACTGTCTCAAGAGAGACA
* * *
1592780 AAATTTGTTTCAAGTGAAACTATCTCAAGAGACACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* * **
1592816 AAATTTGTTTAAAGGGAAACTGTCTCAAGGGAGATG
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* *
1592852 AAATTTGTTTCAAGTGAAACTGTCTTAAGAGAGACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* * *
1592888 AAATTTGTTTCAAGGGAAACTGTCTCAGGAAAGATA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* * *
1592924 AAACTTGTTTCAAGGGAAACTGTATTAAGAGAGACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* * * * **
1592960 AAATTTGTTTCAAGAGAAATTGTCTTAAGGGAGATG
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
*
1592996 AAATTTCTTTCAAGGGAAACTGTCTCAAGAGAGACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* * * *
1593032 AAATTTTATTTCAAGAGAAACTGTTTCAAGGGAGACA
1 AAA-TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
** *
1593069 AAATTTGTTTCAAAAGAAACTGTCTCAAG-GAAGACG
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAG-AGACA
* * *
1593105 AAATTTGTTTCAAGAGAAACTGTCTCAAGGGAGATGA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGA-CA
* * *
1593142 AATTTTCTTTCAAGGAAAACTGTCTCAAGAGAGACA
1 AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
* *
1593178 AAACTTTGTTTCAAGAGAAACTGTCTCAAGAGGGACA
1 AAA-TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
*
1593215 AAAGTTT-TTTCACGGGAAAC
1 AAA-TTTGTTTCAAGGGAAAC
1593235 ATTTTTCAAA
Statistics
Matches: 449, Mismatches: 71, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
35 1 0.00
36 318 0.71
37 130 0.29
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (36 bp):
AAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACA
Found at i:1593351 original size:75 final size:74
Alignment explanation
Indices: 1593267--1593431 Score: 201
Period size: 75 Copynumber: 2.2 Consensus size: 74
1593257 AGGGAAACAA
* * *
1593267 TCTCAAGCGAGATGAAA-TTTGTTTTAAGAAGAA-AATCCCGAGTGAGATAAAATTTATTATTTC
1 TCTCAAGCGAGA-CAAAGTTTGTTTTAAGAAAAATAATCCCAAGTGAGATAAAATTTA--ATTTC
1593330 GAGTAAAAATTG
63 GAGTAAAAATTG
* * *
1593342 TCTCAAGCGAGACAAAGTTTGTTTTAAGAAAAATAATCTCAATTGAGATAAAATTTAGTTTCGAG
1 TCTCAAGCGAGACAAAGTTTGTTTTAAGAAAAATAATCCCAAGTGAGATAAAATTTAATTTCGAG
*
1593407 T-AAAACTG
66 TAAAAATTG
* *
1593415 TCTAAAGCAAGACAAAG
1 TCTCAAGCGAGACAAAG
1593432 ATCTCTCAAG
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
73 21 0.27
74 11 0.14
75 27 0.34
76 20 0.25
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (74 bp):
TCTCAAGCGAGACAAAGTTTGTTTTAAGAAAAATAATCCCAAGTGAGATAAAATTTAATTTCGAG
TAAAAATTG
Found at i:1593428 original size:73 final size:74
Alignment explanation
Indices: 1593284--1593431 Score: 192
Period size: 73 Copynumber: 2.0 Consensus size: 74
1593274 CGAGATGAAA
* * * *
1593284 TTTGTTTTAAGAAGAAAATCCCGAGTGAGATAAAATTTATTATTTCGAGTAAAAATTGTCTCAAG
1 TTTGTTTTAAGAAAAAAATCCCAAGTGAGATAAAATTTA-TATTTCGAGTAAAAACTGTCTAAAG
*
1593349 CGAGACAAAG
65 CAAGACAAAG
* * *
1593359 TTTGTTTTAAGAAAAATAATCTCAATTGAGATAAAATTTA-GTTTCGAGT-AAAACTGTCTAAAG
1 TTTGTTTTAAGAAAAA-AATCCCAAGTGAGATAAAATTTATATTTCGAGTAAAAACTGTCTAAAG
1593422 CAAGACAAAG
65 CAAGACAAAG
1593432 ATCTCTCAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
73 21 0.33
74 8 0.12
75 15 0.23
76 20 0.31
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (74 bp):
TTTGTTTTAAGAAAAAAATCCCAAGTGAGATAAAATTTATATTTCGAGTAAAAACTGTCTAAAGC
AAGACAAAG
Found at i:1593615 original size:85 final size:85
Alignment explanation
Indices: 1593467--1593628 Score: 243
Period size: 85 Copynumber: 1.9 Consensus size: 85
1593457 TTAAAATATC
* * * * *
1593467 GTGAATCAAGTAAAGGGAATATTGAAAACATCATGCCCAAAGGTCTTATGAATGTCCCGAAGGAC
1 GTGAATCAAGCAAAGGAAATATTGAAAACATCATACCCAAAGGTCTTATGAATGACCCAAAGGAC
1593532 TTAAGCTGATTCGACGTGTT
66 TTAAGCTGATTCGACGTGTT
* * * *
1593552 GTGAATCGAGCAAAGGAAATGTTGAAAACATCTTACCCAAAGGTCTTATGGATGACCCAAAGGAC
1 GTGAATCAAGCAAAGGAAATATTGAAAACATCATACCCAAAGGTCTTATGAATGACCCAAAGGAC
1593617 TTAAGCTGATTC
66 TTAAGCTGATTC
1593629 AAAGTGTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 68 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (85 bp):
GTGAATCAAGCAAAGGAAATATTGAAAACATCATACCCAAAGGTCTTATGAATGACCCAAAGGAC
TTAAGCTGATTCGACGTGTT
Found at i:1593924 original size:20 final size:20
Alignment explanation
Indices: 1593896--1593967 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
1593886 GCATCATGCT
*
1593896 CGAAAGACTTACTGATGGCC
1 CGAAAGACTTACTAATGGCC
* * *
1593916 CGAAGGACTTAAGCATCAT-GCT
1 CGAAAGACTT-A-C-TAATGGCC
*
1593938 TGAAAGACTTACTAATGGCC
1 CGAAAGACTTACTAATGGCC
*
1593958 CGAAGGACTT
1 CGAAAGACTT
1593968 CCTCATCAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
19 3 0.08
20 20 0.51
21 2 0.05
22 11 0.28
23 3 0.08
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (20 bp):
CGAAAGACTTACTAATGGCC
Found at i:1593975 original size:42 final size:42
Alignment explanation
Indices: 1593876--1593967 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
1593866 GGATGGACCT
*
1593876 AAGGACTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCG
1 AAGGACTTAAGCATCATGCTCGAAAGACTTACTAATGGCCCG
*
1593918 AAGGACTTAAGCATCATGCTTGAAAGACTTACTAATGGCCCG
1 AAGGACTTAAGCATCATGCTCGAAAGACTTACTAATGGCCCG
1593960 AAGGACTT
1 AAGGACTT
1593968 CCTCATCAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.23
Consensus pattern (42 bp):
AAGGACTTAAGCATCATGCTCGAAAGACTTACTAATGGCCCG
Found at i:1597763 original size:10 final size:10
Alignment explanation
Indices: 1597748--1597831 Score: 59
Period size: 10 Copynumber: 8.5 Consensus size: 10
1597738 AATGTGGGTC
1597748 TAAATTAAAA
1 TAAATTAAAA
1597758 TAAATTAAAA
1 TAAATTAAAA
**
1597768 CTAAA-T-AGC
1 -TAAATTAAAA
*
1597777 CAAATTAAAA
1 TAAATTAAAA
1597787 TAAATTAAAA
1 TAAATTAAAA
**
1597797 CTAAA-T-AGC
1 -TAAATTAAAA
*
1597806 CAAATTAAAA
1 TAAATTAAAA
1597816 TAAATTAAAA
1 TAAATTAAAA
1597826 CTAAAT
1 -TAAAT
1597832 AGCCAAATTA
Statistics
Matches: 55, Mismatches: 12, Indels: 13
0.69 0.15 0.16
Matches are distributed among these distances:
8 6 0.11
9 4 0.07
10 32 0.58
11 13 0.24
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.26
Consensus pattern (10 bp):
TAAATTAAAA
Found at i:1597786 original size:29 final size:29
Alignment explanation
Indices: 1597749--1597849 Score: 202
Period size: 29 Copynumber: 3.5 Consensus size: 29
1597739 ATGTGGGTCT
1597749 AAATTAAAATAAATTAAAACTAAATAGCC
1 AAATTAAAATAAATTAAAACTAAATAGCC
1597778 AAATTAAAATAAATTAAAACTAAATAGCC
1 AAATTAAAATAAATTAAAACTAAATAGCC
1597807 AAATTAAAATAAATTAAAACTAAATAGCC
1 AAATTAAAATAAATTAAAACTAAATAGCC
1597836 AAATTAAAATAAAT
1 AAATTAAAATAAAT
1597850 AACAAATACA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.63, C:0.09, G:0.03, T:0.25
Consensus pattern (29 bp):
AAATTAAAATAAATTAAAACTAAATAGCC
Found at i:1601742 original size:31 final size:30
Alignment explanation
Indices: 1601716--1601805 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 30
1601706 TGGGTACGTT
1601716 CTGTGGCCTCGAGATCTTTCTTGGGTAGGCC
1 CTGTGGCCTCGAGATCTTTCTTGGGTA-GCC
* * *
1601747 ATGCGGCCTCGAGATTTTTCTTGGGTAAGCCC
1 CTGTGGCCTCGAGATCTTTCTTGGGT-AG-CC
* *
1601779 CT-TGGCCCCGAGAACTTTCTTGGGTAG
1 CTGTGGCCTCGAGATCTTTCTTGGGTAG
1601806 GCTCTCAGGC
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
30 2 0.04
31 43 0.88
32 4 0.08
ACGTcount: A:0.13, C:0.26, G:0.30, T:0.31
Consensus pattern (30 bp):
CTGTGGCCTCGAGATCTTTCTTGGGTAGCC
Found at i:1601817 original size:31 final size:29
Alignment explanation
Indices: 1601720--1601817 Score: 88
Period size: 31 Copynumber: 3.2 Consensus size: 29
1601710 TACGTTCTGT
*
1601720 GGCCTCGAGATCTTTCTTGGGTAGGCCATGC
1 GGCCCCGAGATCTTTCTTGGGTAGGCC-T-C
* * * *
1601751 GGCCTCGAGATTTTTCTTGGGTAAGCCCCTT
1 GGCCCCGAGATCTTTCTTGGGT-AG-GCCTC
*
1601782 GGCCCCGAGAACTTTCTTGGGTAGGCTCTC
1 GGCCCCGAGATCTTTCTTGGGTAGGC-CTC
1601812 AGGCCC
1 -GGCCC
1601818 TAAGGTGCTC
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
29 1 0.02
30 4 0.07
31 45 0.82
32 3 0.05
33 2 0.04
ACGTcount: A:0.13, C:0.29, G:0.30, T:0.29
Consensus pattern (29 bp):
GGCCCCGAGATCTTTCTTGGGTAGGCCTC
Found at i:1603717 original size:48 final size:48
Alignment explanation
Indices: 1603645--1603737 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 48
1603635 AAGTACCAAT
* * * *
1603645 GCACCACCGTCACACATACGTCAAACTTGTGCTC-AGTATCATATAATG
1 GCACCACCATCACACAAACATCAAACTCGTG-TCAAGTATCATATAATG
*
1603693 GCACCATCATCACACAAACATCAAACTCGTGTCAAGTATCATATA
1 GCACCACCATCACACAAACATCAAACTCGTGTCAAGTATCATATA
1603738 TGCAGCTGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.05
48 37 0.95
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (48 bp):
GCACCACCATCACACAAACATCAAACTCGTGTCAAGTATCATATAATG
Found at i:1610673 original size:43 final size:43
Alignment explanation
Indices: 1610625--1610713 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 43
1610615 TTTTTTTTTT
* *
1610625 AAACACCGCAATTGTGTAGTAATTTAATGGCATTTGTAAGAAC
1 AAACACCACAATTGTGTAGTAATTTAATGGCATTTCTAAGAAC
* * * *
1610668 AAACACTACAATTTTGTAGTAGTTTAGTGGCATTTCTAAGAAC
1 AAACACCACAATTGTGTAGTAATTTAATGGCATTTCTAAGAAC
1610711 AAA
1 AAA
1610714 TGCCGCAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (43 bp):
AAACACCACAATTGTGTAGTAATTTAATGGCATTTCTAAGAAC
Found at i:1611572 original size:24 final size:23
Alignment explanation
Indices: 1611514--1611574 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
1611504 TATAAATATG
**
1611514 TTTATATGGTATAGTGCTCATACA
1 TTTATATTATATAGTGC-CATACA
*
1611538 TTTATATTATATAGTG-CATACG
1 TTTATATTATATAGTGCCATACA
*
1611560 TTTATACTATATAGT
1 TTTATATTATATAGT
1611575 ATAAATATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 19 0.58
24 14 0.42
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (23 bp):
TTTATATTATATAGTGCCATACA
Found at i:1611610 original size:27 final size:27
Alignment explanation
Indices: 1611579--1611637 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
1611569 TATAGTATAA
*
1611579 ATATA-CTATATGTTCATA-TACGTTATT
1 ATATAGCTATATGTT-ATACTAC-ATATT
*
1611606 ATATAGTTATATGTTATACTACATATT
1 ATATAGCTATATGTTATACTACATATT
1611633 ATATA
1 ATATA
1611638 TACATACTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 17 0.61
28 11 0.39
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.47
Consensus pattern (27 bp):
ATATAGCTATATGTTATACTACATATT
Found at i:1611687 original size:3 final size:3
Alignment explanation
Indices: 1611679--1611709 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1611669 ATAATACATA
1611679 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1611710 TTACTTTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:1611687 original size:24 final size:26
Alignment explanation
Indices: 1611647--1611696 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
1611637 ATACATACTC
* *
1611647 AATACATATTTTTTTA-TATT-TTAT
1 AATACATATATTATTATTATTATTAT
1611671 AATACATATATTATTATTATTATTAT
1 AATACATATATTATTATTATTATTAT
1611697 TATTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 14 0.64
25 4 0.18
26 4 0.18
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (26 bp):
AATACATATATTATTATTATTATTAT
Found at i:1612609 original size:24 final size:23
Alignment explanation
Indices: 1612566--1612613 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
1612556 TTTATGCATG
1612566 TTTTAATTTAGCCAAAATTAATTT
1 TTTTAATTTAGCCAAAATT-ATTT
* **
1612590 TTTTGATTTAGCCATTATTATTT
1 TTTTAATTTAGCCAAAATTATTT
1612613 T
1 T
1612614 AATTTTTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (23 bp):
TTTTAATTTAGCCAAAATTATTT
Found at i:1612756 original size:11 final size:10
Alignment explanation
Indices: 1612742--1612828 Score: 52
Period size: 10 Copynumber: 8.7 Consensus size: 10
1612732 TTTATTTTGT
1612742 TTTTTATTTCA
1 TTTTTATTT-A
1612753 TTTTTATTTA
1 TTTTTATTTA
*
1612763 TTTTATTTTTA
1 TTTT-TATTTA
*
1612774 TTATT-TTTA
1 TTTTTATTTA
* *
1612783 TTTTTACTAA
1 TTTTTATTTA
* *
1612793 ATTTTATTTG
1 TTTTTATTTA
* *
1612803 TCTCTATTTA
1 TTTTTATTTA
*
1612813 TTTAT-TTTA
1 TTTTTATTTA
*
1612822 TTATTAT
1 TTTTTAT
1612829 CATATTATTT
Statistics
Matches: 56, Mismatches: 17, Indels: 7
0.70 0.21 0.09
Matches are distributed among these distances:
9 15 0.27
10 24 0.43
11 17 0.30
ACGTcount: A:0.22, C:0.05, G:0.01, T:0.72
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:1612781 original size:15 final size:14
Alignment explanation
Indices: 1612724--1612788 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 14
1612714 TTTAACCTTC
1612724 TTTATTTTTTTATT
1 TTTATTTTTTTATT
*
1612738 TTGTTTTTTATTTCATT
1 TT-TATTTT-TTT-ATT
1612755 TTTATTTATTTTATT
1 TTTATTT-TTTTATT
1612770 TTTATTATTTTTATT
1 TTTATT-TTTTTATT
1612785 TTTA
1 TTTA
1612789 CTAAATTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
14 2 0.05
15 25 0.57
16 11 0.25
17 6 0.14
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTATTTTTTTATT
Found at i:1612782 original size:20 final size:20
Alignment explanation
Indices: 1612724--1612786 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
1612714 TTTAACCTTC
*
1612724 TTTATTTTT-TTATTTTGTTT
1 TTTATTTTTATTATTTT-TAT
* *
1612744 TTTA-TTTCATTTTTATTTAT
1 TTTATTTTTATTATT-TTTAT
1612764 TTTATTTTTATTATTTTTAT
1 TTTATTTTTATTATTTTTAT
1612784 TTT
1 TTT
1612787 TACTAAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 3 0.09
20 22 0.63
21 10 0.29
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTATTTTTATTATTTTTAT
Found at i:1612797 original size:41 final size:39
Alignment explanation
Indices: 1612724--1612820 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 39
1612714 TTTAACCTTC
* * *
1612724 TTTATTTTTTTATTTTGTTTTTTATTTCATTTTTATTTAT
1 TTTATTTTTTTATTTTGTTTTTTA-CTAAATTTTATTTAT
*
1612764 TTTATTTTTATTATTTT-TATTTTTACTAAATTTTATTTGT
1 TTTATTTTT-TTATTTTGT-TTTTTACTAAATTTTATTTAT
* *
1612804 CTCTATTTATTTATTTT
1 -TTTATTTTTTTATTTT
1612821 ATTATTATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
40 28 0.58
41 20 0.42
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (39 bp):
TTTATTTTTTTATTTTGTTTTTTACTAAATTTTATTTAT
Found at i:1617002 original size:99 final size:99
Alignment explanation
Indices: 1616826--1617027 Score: 300
Period size: 99 Copynumber: 2.0 Consensus size: 99
1616816 TTATAATATT
*
1616826 ATATATATACAATAAAGGATGAGTTGTCCCTCTAGAGAATTTGGTTAAACACCCCGACTTTATGG
1 ATATATATACAATAAAGCATGAGTTGTCCCTCTAGAGAATTTGGTTAAACACCCCGACTTTATGG
*
1616891 ATAAGATTCAGCTAGCCTGATAAAGGTGACTATA
66 ATAAGATTCAGCTAGCCTGATAAAAGTGACTATA
* * * * *
1616925 ATATCTATACAATAAAGCTTGAGTTGTGCCTCTA-AGGCAA-TTGGTTAAACGCCCCGGCTTTAT
1 ATATATATACAATAAAGCATGAGTTGTCCCTCTAGA-G-AATTTGGTTAAACACCCCGACTTTAT
*
1616988 GGATAAGATTCAGCTAGCCTGATAAAAGTGATTATA
64 GGATAAGATTCAGCTAGCCTGATAAAAGTGACTATA
1617024 ATAT
1 ATAT
1617028 TAAGCTTTCT
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
98 1 0.01
99 90 0.97
100 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (99 bp):
ATATATATACAATAAAGCATGAGTTGTCCCTCTAGAGAATTTGGTTAAACACCCCGACTTTATGG
ATAAGATTCAGCTAGCCTGATAAAAGTGACTATA
Found at i:1618842 original size:22 final size:23
Alignment explanation
Indices: 1618796--1618846 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
1618786 GTTTATATGG
* *
1618796 TATAGTGCACATATATTATATTA
1 TATAGTGCACACATATTATACTA
*
1618819 TATAGTGCACACGT-TTATACTA
1 TATAGTGCACACATATTATACTA
1618841 TATAGT
1 TATAGT
1618847 ATAAATATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (23 bp):
TATAGTGCACACATATTATACTA
Found at i:1620063 original size:26 final size:24
Alignment explanation
Indices: 1620008--1620078 Score: 63
Period size: 26 Copynumber: 2.8 Consensus size: 24
1619998 TTAGCCACTG
1620008 TTTTTTTAATT-TTTATATTTTGATC
1 TTTTTTT-ATTATTTAT-TTTTGATC
* *
1620033 CTTTTTTATTTATTTATTTTTAGATT
1 TTTTTTTA-TTATTTATTTTT-GATC
*
1620059 TTTTTGTTAATATTTATTTT
1 TTTTT-TTATTATTTATTTT
1620079 CTTAACATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.03
25 12 0.32
26 22 0.58
27 3 0.08
ACGTcount: A:0.20, C:0.03, G:0.04, T:0.73
Consensus pattern (24 bp):
TTTTTTTATTATTTATTTTTGATC
Found at i:1620151 original size:11 final size:10
Alignment explanation
Indices: 1620124--1620173 Score: 50
Period size: 9 Copynumber: 4.9 Consensus size: 10
1620114 ATTTAACCTT
1620124 TTTTATATTTA
1 TTTT-TATTTA
1620135 TATTTTATTTCA
1 T-TTTTATTT-A
1620147 TTTTTATTTA
1 TTTTTATTTA
1620157 -TTTTATTT-
1 TTTTTATTTA
*
1620165 TTTTAATTT
1 TTTTTATTT
1620174 TTTATTTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
9 15 0.43
10 1 0.03
11 14 0.40
12 5 0.14
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:1620163 original size:25 final size:26
Alignment explanation
Indices: 1620122--1620180 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
1620112 AAATTTAACC
*
1620122 TTTTTTA--TATTTATATTTTATTTCA
1 TTTTTTATTTATTTATATTTT-TTTAA
1620147 -TTTTTATTTATTT-TATTTTTTTAA
1 TTTTTTATTTATTTATATTTTTTTAA
1620171 TTTTTTATTT
1 TTTTTTATTT
1620181 TTCTTCTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
24 10 0.33
25 15 0.50
26 5 0.17
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (26 bp):
TTTTTTATTTATTTATATTTTTTTAA
Found at i:1620166 original size:16 final size:16
Alignment explanation
Indices: 1620124--1620182 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 16
1620114 ATTTAACCTT
*
1620124 TTTTATATTTATATTTTA
1 TTTTAT-TTTTTA-TTTA
*
1620142 TTTCA-TTTTTATTTA
1 TTTTATTTTTTATTTA
*
1620157 TTTTATTTTTTTAATT-
1 TTTTA-TTTTTTATTTA
1620173 TTTTATTTTT
1 TTTTATTTTT
1620183 CTTCTTACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
15 13 0.37
16 10 0.29
17 8 0.23
18 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTTTTATTTA
Found at i:1622056 original size:18 final size:18
Alignment explanation
Indices: 1622030--1622070 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
1622020 ACGCTCTTAC
*
1622030 TAGCATCGGGAGAGTTTT
1 TAGCGTCGGGAGAGTTTT
1622048 TAGCGTCGGGAGAGTTTT
1 TAGCGTCGGGAGAGTTTT
1622066 TAGCG
1 TAGCG
1622071 GCGATTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.12, G:0.37, T:0.32
Consensus pattern (18 bp):
TAGCGTCGGGAGAGTTTT
Found at i:1636533 original size:138 final size:138
Alignment explanation
Indices: 1636254--1636535 Score: 435
Period size: 136 Copynumber: 2.0 Consensus size: 138
1636244 AGATGTTTAT
*
1636254 TTAATTTATGGGAAAAAGTTATTTTAAATTCTAAATTTTAAAATATACAAATATATAAAAATACT
1 TTAATTTATGGGAAAAAGTTATTTTAAAGTCTAAATTTTAAAATATACAAATATATAAAAATA-T
* *
1636319 AACTATAAAAATAAATTATTAAAAATTGATATATATATATATATATATATATCATAATGATTGAA
65 AACTAT-AAAATAAATTATTAAAAATTGACATATATATATATATATAAATATCATAATGATTGAA
1636384 AATATTACTC
129 AATATTACTC
* *
1636394 TTAATTTATGGGATAAAGTTATTTTAAGGTCTAAA-TTTAAAATATACAAATATATAAAAGAT-T
1 TTAATTTATGGGAAAAAGTTATTTTAAAGTCTAAATTTTAAAATATACAAATATATAAAA-ATAT
* *
1636457 AGCTAT-AATTAAATTATTAAAAATTGACATATATATATATATATAAATTAATCATAATGATTGA
65 AACTATAAAATAAATTATTAAAAATTGACATATATATATATATATAAA-T-ATCATAATGATTGA
1636521 AAATATTACTC
128 AAATATTACTC
1636532 TTAA
1 TTAA
1636536 ATGATTTTTT
Statistics
Matches: 132, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
136 38 0.29
137 1 0.01
138 35 0.27
139 24 0.18
140 34 0.26
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.39
Consensus pattern (138 bp):
TTAATTTATGGGAAAAAGTTATTTTAAAGTCTAAATTTTAAAATATACAAATATATAAAAATATA
ACTATAAAATAAATTATTAAAAATTGACATATATATATATATATAAATATCATAATGATTGAAAA
TATTACTC
Found at i:1639456 original size:14 final size:13
Alignment explanation
Indices: 1639434--1639500 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 13
1639424 AACCAAAAAT
1639434 TATAT-TAATAAA
1 TATATATAATAAA
1639446 TATATACTAAT-AA
1 TATATA-TAATAAA
1639459 TATAATATAATAAA
1 TAT-ATATAATAAA
*
1639473 TAAATAATATATAATA
1 TATAT-ATA-ATAA-A
1639489 TAGTATATAATA
1 TA-TATATAATA
1639501 TACCATATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
12 5 0.11
13 11 0.24
14 14 0.31
15 7 0.16
16 6 0.13
17 2 0.04
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (13 bp):
TATATATAATAAA
Found at i:1639465 original size:5 final size:5
Alignment explanation
Indices: 1639455--1639533 Score: 58
Period size: 5 Copynumber: 15.4 Consensus size: 5
1639445 ATATATACTA
1639455 ATAAT ATAAT ATAAT A-AAT A-AAT A-ATAT ATAAT ATAGTAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATA--AT ATAAT
* *
1639500 ATACCAT ATAA- ATGTAT ATACT ATAAT ATAAT AT
1 ATA--AT ATAAT AT-AAT ATAAT ATAAT ATAAT AT
1639534 TGTTAGAGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 16
0.76 0.05 0.20
Matches are distributed among these distances:
4 11 0.18
5 38 0.61
6 3 0.05
7 10 0.16
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:1639479 original size:16 final size:15
Alignment explanation
Indices: 1639434--1639488 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
1639424 AACCAAAAAT
*
1639434 TATATTAATAAAT-A
1 TATAATAATAAATAA
*
1639448 TATACTAATAATATAA
1 TATAATAATAA-ATAA
1639464 TATAATAAATAAATAA
1 TATAAT-AATAAATAA
1639480 TAT-ATAATA
1 TATAATAATA
1639489 TAGTATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 14 0.39
15 4 0.11
16 13 0.36
17 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAATAATAAATAA
Found at i:1639497 original size:12 final size:12
Alignment explanation
Indices: 1639439--1639533 Score: 77
Period size: 12 Copynumber: 7.5 Consensus size: 12
1639429 AAAATTATAT
*
1639439 TAATAAATATATA
1 TAATATATA-ATA
1639452 CTAATAATATAATA
1 -TAAT-ATATAATA
*
1639466 TAATAAATAA-A
1 TAATATATAATA
1639477 TAATATATAATA
1 TAATATATAATA
*
1639489 TAGTATATAATA
1 TAATATATAATA
*
1639501 TACCATATA-AATG
1 TA--ATATATAATA
1639514 TATATACTATAATA
1 TA-ATA-TATAATA
1639528 TAATAT
1 TAATAT
1639534 TGTTAGAGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
11 10 0.15
12 23 0.34
13 14 0.21
14 16 0.24
15 4 0.06
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (12 bp):
TAATATATAATA
Found at i:1640983 original size:2 final size:2
Alignment explanation
Indices: 1640976--1641173 Score: 98
Period size: 2 Copynumber: 108.0 Consensus size: 2
1640966 CAAATATAAC
* * *
1640976 AT AT AT AT AT AT AT A- AT A- AT AT AT AA AT GT A- AC ACT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
*
1641015 AC AT AT AT ACT AT A- AT AT AT A- AT AT AT A- AT AT AT A- AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
1641054 A- AT AT A- AT AT AA AT AT TT AT A- AT AT AT AT A- AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
1641091 AT AT AT A- AT AC AT AT A- AT AT AT ACT AT -T AT A- AT AT CT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* * * *
1641130 -T AT CT A- AT AC AT A- AT AT AT A- AA AT AT A- AA AT AT AT ACT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
1641168 AT AT AT
1 AT AT AT
1641174 TATCCCAGAC
Statistics
Matches: 150, Mismatches: 20, Indels: 52
0.68 0.09 0.23
Matches are distributed among these distances:
1 22 0.15
2 121 0.81
3 7 0.05
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.41
Consensus pattern (2 bp):
AT
Found at i:1641021 original size:41 final size:42
Alignment explanation
Indices: 1640969--1641172 Score: 169
Period size: 41 Copynumber: 5.0 Consensus size: 42
1640959 GTCCTAACAA
* *
1640969 ATATA-ACATATATATATATATAATAATATATAA-ATGTAAC
1 ATATATACATATATATATATATAATAATATATAATATATAAT
1641009 ACTATA-ACATATATACTATA-ATATATAATATATAATATATAAT
1 A-TATATACATATATA-TATATATA-ATAATATATAATATATAAT
* *
1641052 ATAATATA-ATATAAATATTTATAAT-ATATATAATATATAAT
1 AT-ATATACATATATATATATATAATAATATATAATATATAAT
* * * *
1641093 ATATAATACATATAATATATACTATTATAATATCTATTATCT-A-
1 ATAT-ATACATAT-ATATATA-TATAATAATATATAATATATAAT
* * *
1641136 ATACATA-ATATATA-AAATATAA-AATATATACTATATA
1 ATATATACATATATATATATATAATAATATATAATATATA
1641173 TTATCCCAGA
Statistics
Matches: 135, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
37 11 0.08
38 4 0.03
39 2 0.01
40 6 0.04
41 41 0.30
42 28 0.21
43 26 0.19
44 7 0.05
45 10 0.07
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (42 bp):
ATATATACATATATATATATATAATAATATATAATATATAAT
Found at i:1641028 original size:7 final size:7
Alignment explanation
Indices: 1641011--1641163 Score: 127
Period size: 7 Copynumber: 21.6 Consensus size: 7
1641001 AATGTAACAC
*
1641011 TATAACA
1 TATAATA
1641018 TAT-ATA
1 TATAATA
1641024 CTATAATA
1 -TATAATA
1641032 TATAATA
1 TATAATA
1641039 TATAATA
1 TATAATA
1641046 TATAATA
1 TATAATA
1641053 TA-ATATAA
1 TATA-AT-A
1641061 TATAA-A
1 TATAATA
*
1641067 TAT-TTA
1 TATAATA
1641073 TA-ATATA
1 TATA-ATA
1641080 TATAATA
1 TATAATA
1641087 TATAATA
1 TATAATA
1641094 TATAATACA
1 TATAAT--A
1641103 TATAATA
1 TATAATA
*
1641110 TATACTA
1 TATAATA
1641117 TTATAATA
1 -TATAATA
* *
1641125 TCTATTA
1 TATAATA
*
1641132 TCTAATA
1 TATAATA
*
1641139 CATAATA
1 TATAATA
*
1641146 TATAAAA
1 TATAATA
*
1641153 TATAAAA
1 TATAATA
1641160 TATA
1 TATA
1641164 TACTATATAT
Statistics
Matches: 122, Mismatches: 12, Indels: 24
0.77 0.08 0.15
Matches are distributed among these distances:
6 10 0.08
7 90 0.74
8 14 0.11
9 8 0.07
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (7 bp):
TATAATA
Found at i:1641033 original size:5 final size:5
Alignment explanation
Indices: 1641031--1641125 Score: 71
Period size: 5 Copynumber: 19.8 Consensus size: 5
1641021 ATACTATAAT
*
1641031 ATATA ATAT- ATA-A TATATA ATATA ATATA ATATA A-ATA TTTATA ATAT-
1 ATATA ATATA ATATA -ATATA ATATA ATATA ATATA ATATA -ATATA ATATA
* *
1641079 ATATA ATAT- ATA-A TATATA ATA-C ATATA ATAT- ATACTA TTATA ATAT
1 ATATA ATATA ATATA -ATATA ATATA ATATA ATATA ATA-TA ATATA ATAT
1641126 CTATTATCTA
Statistics
Matches: 72, Mismatches: 6, Indels: 24
0.71 0.06 0.24
Matches are distributed among these distances:
4 19 0.26
5 46 0.64
6 7 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (5 bp):
ATATA
Found at i:1641157 original size:14 final size:14
Alignment explanation
Indices: 1640969--1641163 Score: 145
Period size: 14 Copynumber: 13.9 Consensus size: 14
1640959 GTCCTAACAA
*
1640969 ATATAACATAT-AT
1 ATATAATATATAAT
1640982 ATAT-ATATAATAAT
1 ATATAATAT-ATAAT
* *
1640996 ATATAA-ATGTAAC
1 ATATAATATATAAT
*
1641009 ACTATAACATAT-AT
1 A-TATAATATATAAT
1641023 ACTATAATATATAAT
1 A-TATAATATATAAT
1641038 ATATAATATATAAT
1 ATATAATATATAAT
1641052 ATA-ATATAATATAA-
1 ATATA-AT-ATATAAT
*
1641066 ATAT-TTATA-ATAT
1 ATATAATATATA-AT
1641079 ATATAATATATAAT
1 ATATAATATATAAT
1641093 ATATAATACATATAAT
1 ATATAAT--ATATAAT
*
1641109 ATATACTATTATAAT
1 ATATAATA-TATAAT
* * *
1641124 ATCTATTATCTAAT
1 ATATAATATATAAT
* *
1641138 ACATAATATATAAA
1 ATATAATATATAAT
*
1641152 ATATAAAATATA
1 ATATAATATATA
1641164 TACTATATAT
Statistics
Matches: 147, Mismatches: 19, Indels: 31
0.75 0.10 0.16
Matches are distributed among these distances:
11 1 0.01
12 7 0.05
13 16 0.11
14 84 0.57
15 26 0.18
16 13 0.09
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.40
Consensus pattern (14 bp):
ATATAATATATAAT
Found at i:1641170 original size:14 final size:14
Alignment explanation
Indices: 1640978--1641170 Score: 120
Period size: 12 Copynumber: 15.0 Consensus size: 14
1640968 AATATAACAT
1640978 ATATATATA-TATA
1 ATATATATACTATA
1640991 ATA-ATATA-TA-A
1 ATATATATACTATA
* *
1641002 ATGTA-ACACTATA
1 ATATATATACTATA
*
1641015 ACATATATACTATA
1 ATATATATACTATA
1641029 ATATATAATA-TATA
1 ATATAT-ATACTATA
1641043 ATATATA-A-TATA
1 ATATATATACTATA
1641055 ATATA-ATA-TA-A
1 ATATATATACTATA
* *
1641066 ATATTTATAATAT-
1 ATATATATACTATA
1641079 ATATA-ATA-TATA
1 ATATATATACTATA
1641091 ATATATAATAC-AT-
1 ATATAT-ATACTATA
*
1641104 ATAATATATACTATT
1 AT-ATATATACTATA
*
1641119 ATA-ATAT-CTATT
1 ATATATATACTATA
*
1641131 ATCTA-ATAC-ATA
1 ATATATATACTATA
* *
1641143 ATATATAAAATATA
1 ATATATATACTATA
*
1641157 AAATATATACTATA
1 ATATATATACTATA
1641171 TATTATCCCA
Statistics
Matches: 144, Mismatches: 16, Indels: 39
0.72 0.08 0.20
Matches are distributed among these distances:
11 14 0.10
12 49 0.34
13 28 0.19
14 48 0.33
15 5 0.03
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.40
Consensus pattern (14 bp):
ATATATATACTATA
Found at i:1649267 original size:63 final size:63
Alignment explanation
Indices: 1649138--1649260 Score: 151
Period size: 63 Copynumber: 2.0 Consensus size: 63
1649128 ACCTAAGGGA
** * ** * *
1649138 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGGCTGTGGGGCCTATCTAAGAAC
1 ACATCTTAGGGCCACAGAGCCTACCCAAGATAGATCTCAGGGCTGAAGAGCCTACCTAAGAAC
*
1649201 ACATCTTAGGGCCACAGGGCCTACCCAAGA-ATGATCTCAGGGCTGAAGAGCC-ACCTAAGA
1 ACATCTTAGGGCCACAGAGCCTACCCAAGATA-GATCTCAGGGCTGAAGAGCCTACCTAAGA
1649261 GTCACATTAG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
62 8 0.16
63 43 0.84
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (63 bp):
ACATCTTAGGGCCACAGAGCCTACCCAAGATAGATCTCAGGGCTGAAGAGCCTACCTAAGAAC
Found at i:1660865 original size:5 final size:5
Alignment explanation
Indices: 1660855--1661132 Score: 122
Period size: 5 Copynumber: 54.6 Consensus size: 5
1660845 ATAGATACTA
*
1660855 ATAAT ATAAT ATAAT A-AAT AAAAT AT-AT ATAAT ATAGTAT ATAAT ATACCAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA--AT ATAAT ATA--AT
* * *
1660907 ATAA- ATGTAT ATACT ATAAT ATAAT ATAAT ATAAC ATATAT ATAAT ATAAAT
1 ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT AT-AAT
* * * * *
1660959 GTAAC AT--T ATAAC AT-AT ATACT GTAATAT ATAAT ATAAT ATAATAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT-A-AT ATAAT ATAAT AT-A-AT
*
1661005 ATAAT ATAA- ATATTT ATAAT AT-AT ATAAT AT-AT AATACAT ATAAT
1 ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT -ATA-AT ATAAT
* *
1661050 AT-AT ACTATT ATAAT ATCTAAT ACATAAT AT-AT ATACT AT-AT GAT-AT
1 ATAAT A-TAAT ATAAT A--TAAT --ATAAT ATAAT ATAAT ATAAT -ATAAT
*
1661097 ATAAT AT-AT CAT-AT ATACT AT-AT GAT-AT ATAAT ATA
1 ATAAT ATAAT -ATAAT ATAAT ATAAT -ATAAT ATAAT ATA
1661133 TAATACATAA
Statistics
Matches: 212, Mismatches: 25, Indels: 72
0.69 0.08 0.23
Matches are distributed among these distances:
3 2 0.01
4 39 0.18
5 122 0.58
6 22 0.10
7 26 0.12
9 1 0.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:1660879 original size:9 final size:10
Alignment explanation
Indices: 1660823--1660956 Score: 51
Period size: 11 Copynumber: 12.7 Consensus size: 10
1660813 AACCAAAAAC
1660823 AATATTAATAA
1 AATA-TAATAA
1660834 ATATATAATAA
1 A-ATATAATAA
* *
1660845 ATAGATACTAA
1 A-ATATAATAA
*
1660856 TAATATAATAT
1 -AATATAATAA
1660867 AATA-AATAA
1 AATATAATAA
*
1660876 AATAT-ATAT
1 AATATAATAA
*
1660885 AATATAGTATAT
1 AATATA--ATAA
1660897 AATATACCATATA
1 AATATA--ATA-A
* *
1660910 AATGT-ATAT
1 AATATAATAA
* *
1660919 ACTATAATAT
1 AATATAATAA
1660929 AATATAATATA
1 AATATAATA-A
*
1660940 ACATAT-ATAT
1 A-ATATAATAA
1660950 AATATAA
1 AATATAA
1660957 ATGTAACATT
Statistics
Matches: 95, Mismatches: 17, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
9 23 0.24
10 21 0.22
11 26 0.27
12 21 0.22
13 4 0.04
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (10 bp):
AATATAATAA
Found at i:1660884 original size:2 final size:2
Alignment explanation
Indices: 1660877--1661148 Score: 130
Period size: 2 Copynumber: 144.5 Consensus size: 2
1660867 AATAAATAAA
* * *
1660877 AT AT AT AT A- AT AT AGT AT AT A- AT AT ACC AT AT AA AT GT AT AT
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT
* *
1660919 ACT AT A- AT AT A- AT AT A- AT AT A- AC AT AT AT AT A- AT AT AA
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
1660957 AT GT A- AC AT -T AT A- AC AT AT AT ACT GT A- AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* *
1660995 A- AT AT A- AT AT AT A- AT AT AA AT AT TT AT A- AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
1661032 AT AT AT A- AT AC AT AT A- AT AT AT ACT AT -T AT A- AT AT CT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
*
1661070 AT AC AT A- AT AT AT AT ACT AT AT GAT AT AT A- AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT AT AT AT AT -AT AT
*
1661111 AT ACT AT AT GAT AT AT A- AT AT AT A- AT AC AT A- AT AT AT A
1 AT A-T AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1661149 GTATCCGGGA
Statistics
Matches: 206, Mismatches: 27, Indels: 74
0.67 0.09 0.24
Matches are distributed among these distances:
1 27 0.13
2 161 0.78
3 18 0.09
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (2 bp):
AT
Found at i:1660889 original size:7 final size:7
Alignment explanation
Indices: 1660833--1661148 Score: 188
Period size: 7 Copynumber: 44.1 Consensus size: 7
1660823 AATATTAATA
1660833 AATATAT
1 AATATAT
*
1660840 AATAAAT
1 AATATAT
*
1660847 AGATA-CT
1 A-ATATAT
1660854 AATAATAT
1 AAT-ATAT
1660862 AATATAAT
1 AATAT-AT
*
1660870 AA-ATAA
1 AATATAT
1660876 AATATAT
1 AATATAT
1660883 -ATAATAT
1 AAT-ATAT
*
1660890 AGTATAT
1 AATATAT
*
1660897 AATATAC
1 AATATAT
*
1660904 CATATA-
1 AATATAT
*
1660910 AATGTAT
1 AATATAT
1660917 -ATACTAT
1 AATA-TAT
1660924 AATATA-
1 AATATAT
1660930 ATATAATAT
1 A-AT-ATAT
*
1660939 AACATAT
1 AATATAT
1660946 ATATAATAT
1 A-AT-ATAT
*
1660955 AA-ATGT
1 AATATAT
*
1660961 AACATTAT
1 AATA-TAT
*
1660969 AACATAT
1 AATATAT
*
1660976 -ATACTGT
1 AATA-TAT
1660983 AATATAT
1 AATATAT
1660990 AATATAATAT
1 -A-AT-ATAT
1661000 AATATAT
1 AATATAT
1661007 AATATA-
1 AATATAT
1661013 AATAT-T
1 AATATAT
*
1661019 TATA-AT
1 AATATAT
1661025 -ATATAT
1 AATATAT
1661031 AATATAT
1 AATATAT
1661038 AATACATAT
1 AAT--ATAT
1661047 AATATAT
1 AATATAT
*
1661054 ACTATTAT
1 AATA-TAT
*
1661062 AATATCT
1 AATATAT
*
1661069 AATACAT
1 AATATAT
1661076 AATATAT
1 AATATAT
1661083 ATACTATAT
1 A-A-TATAT
*
1661092 GATATAT
1 AATATAT
1661099 AATATAT
1 AATATAT
*
1661106 CATATAT
1 AATATAT
*
1661113 ACTATAT
1 AATATAT
*
1661120 GATATAT
1 AATATAT
1661127 AATATAT
1 AATATAT
*
1661134 AATACAT
1 AATATAT
1661141 AATATAT
1 AATATAT
1661148 A
1 A
1661149 GTATCCGGGA
Statistics
Matches: 242, Mismatches: 36, Indels: 62
0.71 0.11 0.18
Matches are distributed among these distances:
5 3 0.01
6 32 0.13
7 141 0.58
8 41 0.17
9 21 0.09
10 4 0.02
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.39
Consensus pattern (7 bp):
AATATAT
Found at i:1661769 original size:2 final size:2
Alignment explanation
Indices: 1661762--1661786 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1661752 AATCTTTGCT
1661762 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1661787 TTAATAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1662579 original size:70 final size:69
Alignment explanation
Indices: 1662467--1662603 Score: 195
Period size: 70 Copynumber: 2.0 Consensus size: 69
1662457 AGCAGGAACC
* *
1662467 ATGTGCTAACCCCACTACACCACACGTTGTTGTCGATTAGATTT-AGAGGTGTTAGTGGAACTCT
1 ATGTGCTAACCCCACTACACCACACATTGTTGTCGATTAGATTTGA-AGGTGCTAGTGGAACTCT
1662531 AAACT
65 AAACT
* * * *
1662536 ATGTGTTAACCCTCACTACATCACACATTGTTGTTGGTTAGATTTGAAGGTGCTAGTGGAACTCT
1 ATGTGCTAACCC-CACTACACCACACATTGTTGTCGATTAGATTTGAAGGTGCTAGTGGAACTCT
1662601 AAA
65 AAA
1662604 TCCTAAACCA
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
69 11 0.18
70 48 0.80
71 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (69 bp):
ATGTGCTAACCCCACTACACCACACATTGTTGTCGATTAGATTTGAAGGTGCTAGTGGAACTCTA
AACT
Found at i:1662771 original size:103 final size:103
Alignment explanation
Indices: 1662589--1662780 Score: 262
Period size: 103 Copynumber: 1.9 Consensus size: 103
1662579 TTGAAGGTGC
* * *
1662589 TAGTGGAACTCTAAATCCTAAACCATGTGCTAACCCCAACTACAATAAAAGTTATTGTTAGATTT
1 TAGTGAAACCCTAAACCCTAAACCATGTGCTAACCCCAACTA-AATAAAAGTTATTGTTAGATTT
* *
1662654 AAAGGTGTTGGTGGAATCCTAAACCCTAGACCAAGGCGT
65 AAAGGTGTTAGTGGAACCCTAAACCCTAGACCAAGGCGT
** *
1662693 TAGTGAAACCCTAAACCCTAAACCATGTGCTAACCTCC-ACT-AATGTCATGTTATTGTTAGATT
1 TAGTGAAACCCTAAACCCTAAACCATGTGCTAACC-CCAACTAAAT-AAAAGTTATTGTTAGATT
*
1662756 TAAAGGTGTTAGTGGACCCCTAAAC
64 TAAAGGTGTTAGTGGAACCCTAAAC
1662781 TCTAAACCCT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
102 3 0.04
103 37 0.48
104 35 0.45
105 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (103 bp):
TAGTGAAACCCTAAACCCTAAACCATGTGCTAACCCCAACTAAATAAAAGTTATTGTTAGATTTA
AAGGTGTTAGTGGAACCCTAAACCCTAGACCAAGGCGT
Found at i:1665840 original size:21 final size:20
Alignment explanation
Indices: 1665811--1665851 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
1665801 AATTTATTAA
*
1665811 TAAAATATTAAATTAATATTT
1 TAAAATATTAAAAT-ATATTT
*
1665832 TAAAGTATTAAAATATATTT
1 TAAAATATTAAAATATATTT
1665852 CTATAGGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
TAAAATATTAAAATATATTT
Found at i:1668698 original size:30 final size:30
Alignment explanation
Indices: 1668662--1668737 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
1668652 ATAGTCAAAT
1668662 TAATATTTTATC-AATAGTTTAGGATTAAAC
1 TAATATTTTATCTAA-AGTTTAGGATTAAAC
* * *
1668692 TAATATTTTATCTAAATTTTAGGGTTAAAT
1 TAATATTTTATCTAAAGTTTAGGATTAAAC
*
1668722 TAATGTTTTATCTAAA
1 TAATATTTTATCTAAA
1668738 ACTTATAAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 39 0.95
31 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.47
Consensus pattern (30 bp):
TAATATTTTATCTAAAGTTTAGGATTAAAC
Found at i:1673837 original size:3 final size:3
Alignment explanation
Indices: 1673831--1673903 Score: 82
Period size: 3 Copynumber: 25.7 Consensus size: 3
1673821 ATACTTATAT
* * * *
1673831 TAA TAA TAA TAA TAT TAA TAA TAA TAA TTA TAT TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1673879 T-A TAA T-A TAA T-A TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1673904 TTATTTAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
2 8 0.14
3 50 0.86
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:1673854 original size:18 final size:17
Alignment explanation
Indices: 1673826--1673903 Score: 97
Period size: 18 Copynumber: 4.6 Consensus size: 17
1673816 AAAATATACT
*
1673826 TATATTAATAATAATAA
1 TATAATAATAATAATAA
*
1673843 TATTAATAATAATAATTA
1 TA-TAATAATAATAATAA
*
1673861 TATTAATAAAAATAATAA
1 TA-TAATAATAATAATAA
1673879 TATAAT-ATAAT-ATAA
1 TATAATAATAATAATAA
1673894 TATAATAATA
1 TATAATAATA
1673904 TTATTTAATG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
15 10 0.19
16 7 0.13
17 6 0.11
18 31 0.57
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAATAATAATAATAA
Found at i:1673912 original size:18 final size:19
Alignment explanation
Indices: 1673825--1673912 Score: 65
Period size: 18 Copynumber: 4.5 Consensus size: 19
1673815 AAAAATATAC
1673825 TTATATTAATAATAATAATA
1 TTAT-TTAATAATAATAATA
* *
1673845 TTA-ATAATAATAATTATA
1 TTATTTAATAATAATAATA
* *
1673863 TTA-ATAAAAATAATAATA
1 TTATTTAATAATAATAATA
1673881 TAATATAATATAAT-ATAATAATA
1 T--TAT--T-TAATAATAATAATA
1673904 TTATTTAAT
1 TTATTTAAT
1673913 GGGACGAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
18 34 0.61
19 1 0.02
20 5 0.09
21 3 0.05
23 10 0.18
24 3 0.05
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TTATTTAATAATAATAATA
Found at i:1678858 original size:60 final size:60
Alignment explanation
Indices: 1678747--1678870 Score: 167
Period size: 60 Copynumber: 2.1 Consensus size: 60
1678737 GAACATATGA
* * * * * **
1678747 ATAGTCGGGGAATCATTTTGTAACTTTTAATGGTTGAGATACTCAATAAAATAATGTCTT
1 ATAGTCGAGGAACCATTTTGTAACTTTTAATAGTTGAGAGACTCAACAAAATAATACCTT
* *
1678807 ATAGTCGAGGAACCATTTTGTAACTTTTAATAGTTGAGGGACTGAACAAAATAATACCTT
1 ATAGTCGAGGAACCATTTTGTAACTTTTAATAGTTGAGAGACTCAACAAAATAATACCTT
1678867 ATAG
1 ATAG
1678871 CTGGGGAGCA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (60 bp):
ATAGTCGAGGAACCATTTTGTAACTTTTAATAGTTGAGAGACTCAACAAAATAATACCTT
Found at i:1682137 original size:22 final size:22
Alignment explanation
Indices: 1682109--1682154 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
1682099 TCAATACTTC
1682109 AAAGTTGAAGGACTAAATTTAT
1 AAAGTTGAAGGACTAAATTTAT
1682131 AAAGTTGAAGGACTAAATTTAT
1 AAAGTTGAAGGACTAAATTTAT
1682153 AA
1 AA
1682155 TTAAACCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.04, G:0.17, T:0.30
Consensus pattern (22 bp):
AAAGTTGAAGGACTAAATTTAT
Found at i:1690401 original size:102 final size:102
Alignment explanation
Indices: 1690264--1690450 Score: 247
Period size: 102 Copynumber: 1.8 Consensus size: 102
1690254 TTTAGTTAAA
* ** *
1690264 ATATATGTATTTGATACATATAATATTTTTACTAAAATAAAATTA-T-TAA-TATTAATGTAATT
1 ATATATATATTTGATACA-ATAATATTTGAACTAAAATAAAATTATTGTAATTA-TAA-ATAATT
1690326 ATAAATAATATATATATATATATAATTTTTAGTTTAAATTT
63 ATAAAT-ATATATATATATATATAATTTTTAGTTTAAATTT
*
1690367 ATATATATATTTGATATC-ATAATATTTGAACTAAAATGAAATTATTGTAATTATAAATAATTAT
1 ATATATATATTTGATA-CAATAATATTTGAACTAAAATAAAATTATTGTAATTATAAATAATTAT
*
1690431 ATATATATATATATATATAT
65 AAATATATATATATATATAT
1690451 TAAAAAGTAT
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
102 39 0.53
103 26 0.35
104 7 0.09
105 2 0.03
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (102 bp):
ATATATATATTTGATACAATAATATTTGAACTAAAATAAAATTATTGTAATTATAAATAATTATA
AATATATATATATATATATAATTTTTAGTTTAAATTT
Found at i:1691710 original size:46 final size:46
Alignment explanation
Indices: 1691685--1692235 Score: 881
Period size: 46 Copynumber: 12.0 Consensus size: 46
1691675 TTTTTTGTGT
*
1691685 CTTAATACATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
**
1691731 CTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
*
1691777 CTTAATGCATCTGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
** * *
1691823 CTTAAT-CAATTTGTTCATGCATTTTAGTTATGTCATCCTTTCATAC
1 CTTAATGC-ATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
*
1691869 CTTAATGCATCCGTTCATGCATTTTAGTTTTGGCATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
** * *
1691915 CTTAATGCGCCCGTTCATGCATTTTAGTTATGACATCCTTCCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
*
1691961 CTTAATGCATCCATTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
*
1692007 CTTAATGCATCCGTTCATGTATTTTAGTTATGG-ATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
* *
1692052 CTTAATGCATCTGTTCATGCATTTTAGTTATGACATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1692098 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
** *
1692144 CTTAATGCATTAGTTCATGCATTTTAGTTATGGCATCCTTTAATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
* *
1692190 CTTAATGCATCCGTTCATGCATTTTAGTTATGACATCCTTTTATGC
1 CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1692236 ATTTTAGTTA
Statistics
Matches: 465, Mismatches: 37, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
45 43 0.09
46 421 0.91
47 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (46 bp):
CTTAATGCATCCGTTCATGCATTTTAGTTATGGCATCCTTTCATGC
Found at i:1691746 original size:20 final size:20
Alignment explanation
Indices: 1691717--1692209 Score: 130
Period size: 20 Copynumber: 21.7 Consensus size: 20
1691707 TTTAGTTATG
1691717 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
1691737 GCATCATTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
1691762 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
1691783 GCAT-CTGTTCATGCATTTTAGTTAT
1 GCATCCT-TTCATGC--CTTA---AT
1691808 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
1691829 -CAAT-TTGTTCATGCATTTTAGTTAT
1 GC-ATCCT-TTCATGC--CTTA---AT
*
1691854 GTCATCCTTTCATACCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* * *
1691875 GCATCCGTTCATGCATTTTAGTTTT
1 GCATCCTTTCATGC--CTTA---AT
1691900 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
** * *
1691921 GCGCCCGTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
1691946 GACATCCTTCCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
1691967 GCATCCATTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
1691992 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* **
1692013 GCATCCGTTCATGTATTTTAGTTAT
1 GCATCCTTTCATG--CCTTA---AT
*
1692038 GGATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
1692058 GCAT-CTGTTCATGCATTTTAGTTAT
1 GCATCCT-TTCATGC--CTTA---AT
1692083 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
* *
1692104 GCATCCGTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
1692129 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*** *
1692150 GCATTAGTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
1692175 GGCATCCTTTAATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
1692196 GCATCCGTTCATGC
1 GCATCCTTTCATGC
1692210 ATTTTAGTTA
Statistics
Matches: 349, Mismatches: 57, Indels: 134
0.65 0.11 0.25
Matches are distributed among these distances:
19 6 0.02
20 125 0.36
21 20 0.06
22 30 0.09
23 3 0.01
24 27 0.08
25 32 0.09
26 100 0.29
27 6 0.02
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:1692049 original size:25 final size:24
Alignment explanation
Indices: 1691969--1692260 Score: 68
Period size: 26 Copynumber: 12.5 Consensus size: 24
1691959 GCCTTAATGC
*
1691969 ATCCATTCATGCATTTTAGTTATGG
1 ATCCTTTCATG-ATTTTAGTTATGG
** *
1691994 CATCCTTTCATG-CCTTA---ATGC
1 -ATCCTTTCATGATTTTAGTTATGG
*
1692015 ATCCGTTCATGTATTTTAGTTATGG
1 ATCCTTTCATG-ATTTTAGTTATGG
** *
1692040 ATCCTTTCATG-CCTTA---ATGC
1 ATCCTTTCATGATTTTAGTTATGG
*
1692060 AT-CTGTTCATGCATTTTAGTTATGAC
1 ATCCT-TTCATG-ATTTTAGTTATG-G
** *
1692086 ATCCTTTCATG-CCTTA---ATGC
1 ATCCTTTCATGATTTTAGTTATGG
*
1692106 ATCCGTTCATGCATTTTAGTTATGG
1 ATCCTTTCATG-ATTTTAGTTATGG
** *
1692131 CATCCTTTCATG-CCTTA---ATGC
1 -ATCCTTTCATGATTTTAGTTATGG
***
1692152 ATTAGTTCATGCATTTTAGTTATGG
1 ATCCTTTCATG-ATTTTAGTTATGG
* ** *
1692177 CATCCTTTAATG-CCTTA---ATGC
1 -ATCCTTTCATGATTTTAGTTATGG
* *
1692198 ATCCGTTCATGCATTTTAGTTATGAC
1 ATCCTTTCATG-ATTTTAGTTATG-G
* *
1692224 ATCCTTTTATGCATTTTAGTTATAGC
1 ATCCTTTCATG-ATTTTAGTTAT-GG
1692250 ATCCTTTCATG
1 ATCCTTTCATG
1692261 CCTTAATGCA
Statistics
Matches: 190, Mismatches: 44, Indels: 64
0.64 0.15 0.21
Matches are distributed among these distances:
19 2 0.01
20 49 0.26
21 12 0.06
22 15 0.08
23 3 0.02
24 12 0.06
25 25 0.13
26 69 0.36
27 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (24 bp):
ATCCTTTCATGATTTTAGTTATGG
Found at i:1692304 original size:72 final size:72
Alignment explanation
Indices: 1692160--1692296 Score: 240
Period size: 72 Copynumber: 1.9 Consensus size: 72
1692150 GCATTAGTTC
* *
1692160 ATGCATTTTAGTTATGGCATCCTTTAATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGACA
1 ATGCATTTTAGTTATAGCATCCTTTAATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGAAA
1692225 TCCTTTT
66 TCCTTTT
*
1692232 ATGCATTTTAGTTATAGCATCCTTTCATGCCTTAATGCATCCGTTCATGCATTTTAGTTAT-AAA
1 ATGCATTTTAGTTATAGCATCCTTTAATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGAAA
1692296 T
66 T
1692297 TCGTTTTAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
71 3 0.05
72 59 0.95
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (72 bp):
ATGCATTTTAGTTATAGCATCCTTTAATGCCTTAATGCATCCGTTCATGCATTTTAGTTATGAAA
TCCTTTT
Found at i:1692954 original size:94 final size:93
Alignment explanation
Indices: 1692788--1692958 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 93
1692778 CCTGATACCT
* * *
1692788 ATACTCCTATACTATGGTACCGATACCCCTTTCAATATCGATACCATTTCTATATTCTATTTTGC
1 ATACTACTATACTATGGTACCGATACCCCTTTCAATATCGATACCATTTCTACATTCTATTCT-C
*
1692853 ATGGTATCGATACCCTTCTCACAGTATCG
65 ATAGTATCGATACCCTTCTCACAGTATCG
* *
1692882 ATACTACTATACTATGGTACTGATACTCCCTTTCAGTATCGATACCATTT-TGACATTCTGGA-T
1 ATACTACTATACTATGGTACCGATAC-CCCTTTCAATATCGATACCATTTCT-ACATTCT--ATT
1692945 CT-ATAGTATCGATA
62 CTCATAGTATCGATA
1692959 TTTCCCCTTG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
94 36 0.54
95 28 0.42
96 2 0.03
97 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (93 bp):
ATACTACTATACTATGGTACCGATACCCCTTTCAATATCGATACCATTTCTACATTCTATTCTCA
TAGTATCGATACCCTTCTCACAGTATCG
Found at i:1705846 original size:13 final size:13
Alignment explanation
Indices: 1705828--1705870 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
1705818 GCCATAAATC
*
1705828 TATGACATGCATT
1 TATGACACGCATT
*
1705841 TATGACACGTATT
1 TATGACACGCATT
* *
1705854 TATGACGCGTATT
1 TATGACACGCATT
1705867 TATG
1 TATG
1705871 TTGCACATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (13 bp):
TATGACACGCATT
Found at i:1705867 original size:26 final size:25
Alignment explanation
Indices: 1705838--1705892 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 25
1705828 TATGACATGC
1705838 ATTTATG-ACACGTATTTATGACGCGT
1 ATTTATGTACAC--ATTTATGACGCGT
*
1705864 ATTTATGTTGCACATTTATGACGCGT
1 ATTTATG-TACACATTTATGACGCGT
1705890 ATT
1 ATT
1705893 GAGTGTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 23 0.88
28 3 0.12
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (25 bp):
ATTTATGTACACATTTATGACGCGT
Found at i:1705971 original size:2 final size:2
Alignment explanation
Indices: 1705964--1705992 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1705954 TTTCGTAAAT
1705964 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1705993 TGTAGATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1710445 original size:24 final size:24
Alignment explanation
Indices: 1710373--1710445 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
1710363 AACATGTACA
* *
1710373 CTATTCTCCTGTTCAGCATCAACT
1 CTATACTCCTGTTCAACATCAACT
* * * * **
1710397 CTCTATTCTTGTTCAATATTTACT
1 CTATACTCCTGTTCAACATCAACT
*
1710421 CTATCCTCCTGTTCAACATCAACT
1 CTATACTCCTGTTCAACATCAACT
1710445 C
1 C
1710446 GAAAGTCTTC
Statistics
Matches: 34, Mismatches: 15, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (24 bp):
CTATACTCCTGTTCAACATCAACT
Found at i:1710819 original size:34 final size:32
Alignment explanation
Indices: 1710776--1710840 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 32
1710766 AAAAAATATG
* *
1710776 TTATTAATATTTTTAATATATTGTTAATATGTTA
1 TTATTAATATTGTTAATAT-GT-TTAATATGTTA
1710810 TTATTAATATTGTTAATATGTTTAATATGTT
1 TTATTAATATTGTTAATATGTTTAATATGTT
1710841 TAATGAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 10 0.34
33 1 0.03
34 18 0.62
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (32 bp):
TTATTAATATTGTTAATATGTTTAATATGTTA
Found at i:1710875 original size:20 final size:21
Alignment explanation
Indices: 1710829--1710877 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
1710819 TTGTTAATAT
1710829 GTTTAATATGTTTAATGAATG
1 GTTTAATATGTTTAATGAATG
*
1710850 G-CTAATATG-TTAA-GAAATG
1 GTTTAATATGTTTAATG-AATG
1710869 GTTTAATAT
1 GTTTAATAT
1710878 ATTTTTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 9 0.38
20 13 0.54
21 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (21 bp):
GTTTAATATGTTTAATGAATG
Found at i:1710886 original size:11 final size:11
Alignment explanation
Indices: 1710870--1710954 Score: 65
Period size: 11 Copynumber: 8.0 Consensus size: 11
1710860 TAAGAAATGG
1710870 TTTAATATATT
1 TTTAATATATT
1710881 TTT-A-ATATT
1 TTTAATATATT
1710890 TTTAATA-ATTT
1 TTTAATATA-TT
1710901 TTTAATATATT
1 TTTAATATATT
* *
1710912 ATTAAGGA-ATT
1 TTTAA-TATATT
*
1710923 ATTTAATATGTT
1 -TTTAATATATT
*
1710935 ATT-A-ATATT
1 TTTAATATATT
1710944 TTTAATATATT
1 TTTAATATATT
1710955 ATTTTTTAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 18
0.69 0.10 0.22
Matches are distributed among these distances:
9 14 0.25
10 5 0.09
11 30 0.53
12 8 0.14
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (11 bp):
TTTAATATATT
Done.