genome.fa.s7764.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007764.1 Hibiscus syriacus cultivar Beakdansim tig00110035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58257

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17434--17494	32	1.9	32	89	0	95	24	11	22	40	1.87
19193--19238	16	2.6	19	76	13	53	41	2	8	47	1.46
19718--19788	23	3.1	24	80	9	87	7	14	22	56	1.62
20579--20736	21	7.8	20	72	7	86	38	25	17	18	1.92
20703--20939	20	11.9	20	86	1	260	37	24	18	19	1.94
21634--21680	24	2.0	24	87	8	69	25	14	21	38	1.92
21854--21878	12	2.1	12	100	0	50	72	0	28	0	0.86
24215--24312	19	5.4	19	84	13	143	14	22	17	45	1.84
24196--24312	53	2.2	53	98	1	227	13	23	17	44	1.85
24419--24455	14	2.6	14	91	0	65	45	21	0	32	1.52
26438--26494	14	3.7	14	77	20	60	45	22	21	10	1.82
26419--26511	33	2.8	33	93	0	159	48	21	19	10	1.79
26382--26516	19	7.6	19	76	16	119	46	23	18	11	1.81
26512--26640	19	7.3	19	75	17	125	8	17	28	45	1.77
26512--26603	33	2.8	33	93	3	150	7	18	28	45	1.76
26684--27250	93	6.1	93	98	0	1098	45	18	12	22	1.83
28954--29043	14	5.7	14	74	23	81	42	23	25	8	1.83
28946--29060	33	3.5	33	95	0	212	45	20	24	9	1.81
28953--29065	19	6.8	18	72	23	88	43	22	24	9	1.83
29061--29179	21	6.3	19	77	13	95	10	22	21	45	1.82
29103--29180	41	1.9	41	97	0	147	12	25	16	44	1.83
29104--29179	21	3.7	21	83	3	109	11	25	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29259--29329	33	2.2	33	89	0	106	47	16	23	11	1.79
29511--29565	22	2.5	22	81	0	74	20	16	40	23	1.91
29711--29904	20	9.6	20	82	5	212	19	19	25	35	1.96
29711--29904	60	3.2	60	82	0	244	19	19	25	35	1.96
29891--29973	21	4.0	21	73	6	78	25	16	24	33	1.96
29871--29969	42	2.4	43	77	11	100	21	18	23	37	1.94
30407--30438	2	16.0	2	100	0	64	50	0	0	50	1.00
37572--37649	38	2.1	38	80	4	86	44	1	3	50	1.28
37705--37738	15	2.3	15	94	0	59	44	0	0	55	0.99
43563--43627	29	2.2	30	78	8	71	33	10	29	26	1.90
51375--51424	19	2.6	20	93	6	86	38	28	14	20	1.91
51411--51512	21	4.9	20	71	7	69	34	23	18	23	1.96
51479--51670	20	9.6	20	79	7	194	36	25	18	19	1.94
51518--51670	38	3.8	39	80	6	166	33	25	18	21	1.96
52044--52114	33	2.2	33	94	0	124	11	23	16	47	1.79
52235--52289	14	3.6	14	73	21	56	40	23	27	9	1.85
52235--52305	33	2.2	33	92	0	115	42	25	23	8	1.82
52301--52398	19	5.7	19	70	22	81	10	24	22	42	1.84
52323--52412	14	5.7	14	74	23	81	8	25	23	42	1.83
52306--52420	33	3.5	33	95	0	212	9	24	20	45	1.81
54108--54485	92	4.1	93	97	2	735	22	12	19	46	1.83
54108--54485	185	2.0	184	98	1	731	22	12	19	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54529--54657	19	7.3	19	75	17	125	45	28	17	8	1.77
54565--54657	33	2.8	32	91	4	150	46	27	18	7	1.76
54529--54657	52	2.5	52	74	14	140	45	28	17	8	1.77
54653--54787	19	7.6	19	75	16	128	11	19	23	45	1.82
54675--54731	14	3.7	14	77	20	60	10	21	22	45	1.82
54658--54750	33	2.8	33	95	0	168	10	20	21	47	1.80
56624--56659	14	2.6	14	95	0	63	33	0	22	44	1.53
56766--56867	19	5.6	19	84	13	151	44	17	23	14	1.86
56858--57168	19	17.9	18	73	19	204	15	21	17	45	1.85
56864--57196	137	2.4	136	87	8	471	14	20	18	46	1.84
57070--57143	18	4.6	15	71	22	53	13	22	18	44	1.85
56896--57168	50	5.2	52	87	8	316	14	21	17	46	1.84

Tables:   1

The End!