Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007765.1 Hibiscus syriacus cultivar Beakdansim tig00110037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 517223
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
File 2 of 2
Found at i:361126 original size:18 final size:18
Alignment explanation
Indices: 361099--361140 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
361089 ATATAGAGTA
361099 GTATCGGTACCCCTTTGG
1 GTATCGGTACCCCTTTGG
*
361117 GTATCTGTACCCCTTTGG
1 GTATCGGTACCCCTTTGG
361135 GTATCG
1 GTATCG
361141 ATAACATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.12, C:0.26, G:0.26, T:0.36
Consensus pattern (18 bp):
GTATCGGTACCCCTTTGG
Found at i:361754 original size:19 final size:17
Alignment explanation
Indices: 361711--361754 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
361701 AGTGCATTTC
*
361711 AAACAAAAATTGACTTT
1 AAACAAAAATTGACCTT
*
361728 AAAAAAAAACTTGACACTT
1 AAACAAAAA-TTGAC-CTT
361747 AAACAAAA
1 AAACAAAA
361755 TTAAATTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 9 0.41
ACGTcount: A:0.61, C:0.14, G:0.05, T:0.20
Consensus pattern (17 bp):
AAACAAAAATTGACCTT
Found at i:362861 original size:20 final size:20
Alignment explanation
Indices: 362836--362882 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
362826 TCGGTTCACC
* *
362836 CCGGTTTTACCGGTTTTCAA
1 CCGGTTCTACCGATTTTCAA
*
362856 CCGGTTCTACCGATTTTCAG
1 CCGGTTCTACCGATTTTCAA
362876 CCGGTTC
1 CCGGTTC
362883 ATTGCCAGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.13, C:0.30, G:0.21, T:0.36
Consensus pattern (20 bp):
CCGGTTCTACCGATTTTCAA
Found at i:368826 original size:19 final size:17
Alignment explanation
Indices: 368793--368858 Score: 73
Period size: 17 Copynumber: 3.8 Consensus size: 17
368783 TATAGGAGTC
*
368793 TTTTCTT-TCTCTTTTT
1 TTTTCTTCTTTCTTTTT
368809 GTATTTCTTCTTTCTTTTT
1 -T-TTTCTTCTTTCTTTTT
*
368828 TTCTT-TTTTTTCTTTTT
1 TT-TTCTTCTTTCTTTTT
368845 TTTTCTTCTTTCTT
1 TTTTCTTCTTTCTT
368859 GTTGCTTTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
16 2 0.05
17 23 0.55
18 9 0.21
19 8 0.19
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTCTTCTTTCTTTTT
Found at i:368838 original size:10 final size:10
Alignment explanation
Indices: 368823--368851 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
368813 TTCTTCTTTC
368823 TTTTTTTC-T
1 TTTTTTTCTT
368832 TTTTTTTCTT
1 TTTTTTTCTT
368842 TTTTTTTCTT
1 TTTTTTTCTT
368852 CTTTCTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:368840 original size:21 final size:21
Alignment explanation
Indices: 368793--368855 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
368783 TATAGGAGTC
* * *
368793 TTTTCTTTCTCTTTTTGTATT
1 TTTTCTTTCTTTTTTTCTTTT
*
368814 TCTTCTTTCTTTTTTTCTTTT
1 TTTTCTTTCTTTTTTTCTTTT
*
368835 TTTTCTTTTTTTTTCTTCTTT
1 TTTTCTTTCTTTTT-TTCTTT
368856 CTTGTTGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
21 29 0.83
22 6 0.17
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (21 bp):
TTTTCTTTCTTTTTTTCTTTT
Found at i:373299 original size:21 final size:21
Alignment explanation
Indices: 373273--373349 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
373263 TAGGAGTCTT
*
373273 TTCTTTCTCTTTTTGTATTTC
1 TTCTTTCTCTTTTTCTATTTC
* *
373294 TTCTTTCTTTTTTTCTTTTTC
1 TTCTTTCTCTTTTTCTATTTC
* * *
373315 TTTTTTTCTTTTTTTCT-TTTT
1 -TTCTTTCTCTTTTTCTATTTC
373336 TTCTTT-T-TTTTTCT
1 TTCTTTCTCTTTTTCT
373350 TCTTTCTTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
18 7 0.14
19 1 0.02
20 5 0.10
21 21 0.43
22 15 0.31
ACGTcount: A:0.01, C:0.16, G:0.01, T:0.82
Consensus pattern (21 bp):
TTCTTTCTCTTTTTCTATTTC
Found at i:373302 original size:7 final size:6
Alignment explanation
Indices: 373271--373357 Score: 63
Period size: 6 Copynumber: 14.2 Consensus size: 6
373261 TATAGGAGTC
* * *
373271 TTTTCT TTCTCT TTTTGT ATTTCT TCTTTCTTT TTTTCT TTTTCT TTTT-T
1 TTTTCT TTTTCT TTTTCT TTTTCT T-TTTC--T TTTTCT TTTTCT TTTTCT
* *
373321 TCTT-T TTTTCT TTTT-T TCTTTTT TTTTCT TCTTTCT T
1 TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT T-TTTCT T
373358 GTTGCTTTTG
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
5 10 0.15
6 37 0.57
7 12 0.18
8 4 0.06
9 2 0.03
ACGTcount: A:0.01, C:0.16, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:373310 original size:8 final size:8
Alignment explanation
Indices: 373297--373345 Score: 84
Period size: 8 Copynumber: 6.4 Consensus size: 8
373287 GTATTTCTTC
373297 TTTCTTTT
1 TTTCTTTT
373305 TTTC--TT
1 TTTCTTTT
373311 TTTCTTTT
1 TTTCTTTT
373319 TTTCTTTT
1 TTTCTTTT
373327 TTTCTTTT
1 TTTCTTTT
373335 TTTCTTTT
1 TTTCTTTT
373343 TTT
1 TTT
373346 TTCTTCTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.15
8 33 0.85
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTCTTTT
Found at i:374921 original size:8 final size:8
Alignment explanation
Indices: 374908--374935 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
374898 GTAATATAAG
374908 ATATAAAT
1 ATATAAAT
374916 ATATAAAT
1 ATATAAAT
374924 ATATAAAT
1 ATATAAAT
374932 ATAT
1 ATAT
374936 GGTTCATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATATAAAT
Found at i:375920 original size:74 final size:74
Alignment explanation
Indices: 375799--375955 Score: 242
Period size: 74 Copynumber: 2.1 Consensus size: 74
375789 TTTCTTTTTC
* * * *
375799 AAGGATAAAGAGATAACTTTTACAACTCTCTATCTTTTGAATTGGCTAGGATATAACCAAAACCC
1 AAGGATAAAGAGATAACTTTTACAACTCCCTATCTTTTGAATTGGCTAAGATAAAACCAAAACCA
*
375864 CTTTACAAA
66 CTTTAAAAA
* *
375873 AAGGATAAAGAGATATCTTTTACAGCTCCCTATCTTTTGAATTGGCTAAGATAAAACCAAAACCA
1 AAGGATAAAGAGATAACTTTTACAACTCCCTATCTTTTGAATTGGCTAAGATAAAACCAAAACCA
375938 CTTTAAAAA
66 CTTTAAAAA
*
375947 AATGATAAA
1 AAGGATAAA
375956 AGAAGTAAAC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (74 bp):
AAGGATAAAGAGATAACTTTTACAACTCCCTATCTTTTGAATTGGCTAAGATAAAACCAAAACCA
CTTTAAAAA
Found at i:377311 original size:89 final size:89
Alignment explanation
Indices: 377160--377340 Score: 317
Period size: 89 Copynumber: 2.0 Consensus size: 89
377150 AGCAACCGAT
*
377160 AAATTTAAAAATTACTTTAATCTGAAAATAAGTATTAAATCGTGTTTCAAATCATCCAAATCATA
1 AAATTTAAAAATTACTTTAATCTGAAAATAAGTATTAAATCGTATTTCAAATCATCCAAATCATA
*
377225 ATAATATCATAAGCATACAAGTTA
66 ATAATACCATAAGCATACAAGTTA
* * *
377249 AAATTTAAAATTTATTTTAATCTGAACATAAGTATTAAATCGTATTTCAAATCATCCAAATCATA
1 AAATTTAAAAATTACTTTAATCTGAAAATAAGTATTAAATCGTATTTCAAATCATCCAAATCATA
377314 ATAATACCATAAGCATACAAGTTA
66 ATAATACCATAAGCATACAAGTTA
377338 AAA
1 AAA
377341 GTATTCATAC
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.34
Consensus pattern (89 bp):
AAATTTAAAAATTACTTTAATCTGAAAATAAGTATTAAATCGTATTTCAAATCATCCAAATCATA
ATAATACCATAAGCATACAAGTTA
Found at i:384402 original size:30 final size:30
Alignment explanation
Indices: 384352--384424 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
384342 AGGTAGCTAT
* * * *
384352 CTAGTTAAATAGTAGGTAGGTAGACTCAAG
1 CTAGCTAACTAGTAGCTAGGTAAACTCAAG
*
384382 TTAGCTAACTAGTAGCTAGGTAAACTCAAG
1 CTAGCTAACTAGTAGCTAGGTAAACTCAAG
384412 CTAGCTAACTAGT
1 CTAGCTAACTAGT
384425 GACACTCTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (30 bp):
CTAGCTAACTAGTAGCTAGGTAAACTCAAG
Found at i:387138 original size:56 final size:56
Alignment explanation
Indices: 386984--387648 Score: 534
Period size: 56 Copynumber: 11.9 Consensus size: 56
386974 TCCTAGAATC
* * * * * * *
386984 AATAATATTGTAATGTTTAACTTATCCTAGTTTTTACAATCCAATATCGAAGTTTG
1 AATAATGTTGTAATGTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
* * * * *
387040 AACAGTGTTGTAATGTTTTAACTTATCCAAGTTATTATATTCAAAGATGGAAGTCTG
1 AATAATGTTGTAATG-TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
** * *
387097 AATAATGTTGTAATGTTTAACTTATAAAAGTTGTCACATTCAACA-ATGGAATTTTG
1 AATAATGTTGTAATGTTTAACTTATCCAAGTTGTTACATTCAA-AGATGGAAGTTTG
**
387153 AATAGCGTTGT-ATAGTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
1 AATAATGTTGTAAT-GTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
* * *
387209 AAT-ATCGTTGTAGA-GTTTAACTTATCCAAGTTGTTACATTCTCAA-ATGGAAATTTT
1 AATAAT-GTTGTA-ATGTTTAACTTATCCAAGTTGTTACATTC-AAAGATGGAAGTTTG
* * * *
387265 AAT-ATCG-TGTAAAGTTTAACTTATCAAATTTGTTACATTCAAAGATGGAAGTTTA
1 AATAAT-GTTGTAATGTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
*** * * *
387320 AATAGCATTGTAATGTTTAACTTATCCAAGTTATTACATT-AAA-ATGAAAGTTTA
1 AATAATGTTGTAATGTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
* ** * *
387374 AATAATATTACAATTTCTTAACTTATCCAAGTTGTTACAATCAAAGATGGAAGTTTG
1 AATAATGTTGTAATGT-TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
* * * *
387431 AAT-A-G-TGCTACATAGTTCAACTTATCCAAGTTGTTACATTAAAAAAATGAAAGTTT-
1 AATAATGTTG-TA-AT-GTTTAACTTATCCAAGTTGTTACATT-CAAAGATGGAAGTTTG
** * * * *
387487 ACATAGCGTTGTAATGTCTTAACATAACCAA---GTTACATTCAAAGATAGAGGTTTG
1 A-ATAATGTTGTAATGT-TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
** * * * * * * * *
387542 AATAACATTTTTATGTTTAACTTATCCAAGTTGTTACACTAAAAAATAGAAGATTA
1 AATAATGTTGTAATGTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
* * ** *
387598 AATAGTTTTGTAATGTCTTAACTTATCCATTTTGTTGCATTCAAAGATGGA
1 AATAATGTTGTAATGT-TTAACTTATCCAAGTTGTTACATTCAAAGATGGA
387649 TAAGTTAAAA
Statistics
Matches: 485, Mismatches: 95, Indels: 57
0.76 0.15 0.09
Matches are distributed among these distances:
53 11 0.02
54 46 0.09
55 79 0.16
56 226 0.47
57 105 0.22
58 13 0.03
59 3 0.01
60 2 0.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (56 bp):
AATAATGTTGTAATGTTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTG
Found at i:387331 original size:111 final size:110
Alignment explanation
Indices: 386991--387648 Score: 513
Period size: 111 Copynumber: 5.9 Consensus size: 110
386981 ATCAATAATA
* * * * * * * * * *
386991 TTGTAATGTTTAACTTATCCTAGTTTTTACAATCCAATATCGAAGTTTGAACAGTGTTGTAATGT
1 TTGTAA-GTTTAACTTATCCAAGTTGTTACATTCTAAAAT-GAAATTTTAATAGCGTTGTAAAG-
* * * *
387056 TTTAACTTATCCAAGTTATTATATTCAAAGATGGAAGTCTGAATAATG
63 TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAACG
** * * *
387104 TTGTAATGTTTAACTTATAAAAGTTGTCACATTC-AACAATGGAATTTTGAATAGCGTTGTATAG
1 TTGTAA-GTTTAACTTATCCAAGTTGTTACATTCTAA-AATGAAATTTT-AATAGCGTTGTAAAG
*
387168 TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATATCG
63 TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAACG
* *
387216 TTGTAGAGTTTAACTTATCCAAGTTGTTACATTCTCAAATGGAAATTTTAATATCG-TGTAAAGT
1 TTGTA-AGTTTAACTTATCCAAGTTGTTACATTCTAAAAT-GAAATTTTAATAGCGTTGTAAAGT
* * * * *
387280 TTAACTTATCAAATTTGTTACATTCAAAGATGGAAGTTTAAATAGCA
64 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAACG
* * *** ** **
387327 TTGTAATGTTTAACTTATCCAAGTTATTACA-T-TAAAATGAAAGTTTAAATAATATTACAATTT
1 TTGTAA-GTTTAACTTATCCAAGTTGTTACATTCTAAAATGAAA-TTTTAATAGCGTTGTAAAGT
* **
387390 CTTAACTTATCCAAGTTGTTACAATCAAAGATGGAAGTTTGAATAGTG
64 -TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAACG
* ** * ** * *
387438 CTACATAGTTCAACTTATCCAAGTTGTTACATTAAAAAAATGAAAGTTTACATAGCGTTGTAATG
1 TTGTA-AGTTTAACTTATCCAAGTTGTTACATT-CTAAAATGAAATTTTA-ATAGCGTTGTAAAG
* * * * *
387503 TCTTAACATAACCAA---GTTACATTCAAAGATAGAGGTTTGAATAACAT
63 T-TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAAC-G
* * * ** * ** *
387550 TTTTATGTTTAACTTATCCAAGTTGTTACACTAAAAAATAGAAGA-TTAAATAGTTTTGTAATGT
1 TTGTAAGTTTAACTTATCCAAGTTGTTACATTCTAAAAT-GAA-ATTTTAATAGCGTTGTAAAGT
** *
387614 CTTAACTTATCCATTTTGTTGCATTCAAAGATGGA
64 -TTAACTTATCCAAGTTGTTACATTCAAAGATGGA
387649 TAAGTTAAAA
Statistics
Matches: 442, Mismatches: 83, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
108 4 0.01
109 12 0.03
110 37 0.08
111 197 0.45
112 93 0.21
113 69 0.16
114 30 0.07
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (110 bp):
TTGTAAGTTTAACTTATCCAAGTTGTTACATTCTAAAATGAAATTTTAATAGCGTTGTAAAGTTT
AACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAACG
Found at i:387736 original size:56 final size:57
Alignment explanation
Indices: 387645--387765 Score: 136
Period size: 56 Copynumber: 2.1 Consensus size: 57
387635 CATTCAAAGA
* * * ** ** *
387645 TGGATAAGTTAAAACATTACAACGCTATTTGAACTTCCATATTTGAATGTAGCAGCT
1 TGGATAAGCTAAAACATTACAACCCTACTCAAACTTCCATATGAGAATGTAGCAACT
* * *
387702 TGGATAAGCT-AAACATTACAACCCTACTCAAACTTCTATCTGAGAATGTATCAACT
1 TGGATAAGCTAAAACATTACAACCCTACTCAAACTTCCATATGAGAATGTAGCAACT
387758 TGGATAAG
1 TGGATAAG
387766 TTTATGGAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
56 44 0.83
57 9 0.17
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (57 bp):
TGGATAAGCTAAAACATTACAACCCTACTCAAACTTCCATATGAGAATGTAGCAACT
Found at i:388046 original size:56 final size:56
Alignment explanation
Indices: 387978--388162 Score: 187
Period size: 56 Copynumber: 3.3 Consensus size: 56
387968 AAGTAAAGAG
* * * *
387978 TTTAACCTATCCAAGTTGTTACATTTAAAGATGGAAGTTTGGATAGCGTTATAGAT
1 TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAGAT
* * * * **
388034 TTTAACTTATCCAAGTCGTTGCGTTCAAAAATGGAAGTTTGAATAATGTTGTA-AT
1 TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAGAT
** * * *
388089 GTTTAACTTGCCCTAGTTGTTACATTCAAAGACT-GAAGCTTGTAA-AGCGTTGTAGAG
1 -TTTAACTTATCCAAGTTGTTACATTCAAAGA-TGGAAGTTTG-AATAGCGTTGTAGAT
388146 TTTAACTTATCCAAGTT
1 TTTAACTTATCCAAGTT
388163 AATATATTAC
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
55 2 0.02
56 95 0.94
57 4 0.04
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (56 bp):
TTTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAGAT
Found at i:388302 original size:149 final size:148
Alignment explanation
Indices: 388067--388356 Score: 354
Period size: 149 Copynumber: 2.0 Consensus size: 148
388057 TTCAAAAATG
* * * * *
388067 GAAGTTTGAATAATGTTGTAATGTTTAACTTGCCCTAGTTGTTACATTCAAAGACTGAAGCTTGT
1 GAAGTTTGAATAACGTTGTAAAGTTTAACTTACCCAAGTTGATACATTCAAAGACTGAAGCTTGT
* * *
388132 AAAGCGTTGTAGAGTTTAACTTATCCAAGTTAATATATTAC-AAGATGAAATTTTGAATAGCATT
66 AAAGCGTTGTAGAGTTTAACTTATCCAAGTTAATACATT-CGAAGATGAAAGTTTGAATAACATT
388196 AAAATGTCTTAACAAAGATA
130 AAAATGT-TTAACAAAGATA
* * *
388216 GAAGTTTGAATAACGTTGTAAAGTTTAACTTATCGAAGTTGATACATTC-AAGA-TGGAAGTTTG
1 GAAGTTTGAATAACGTTGTAAAGTTTAACTTACCCAAGTTGATACATTCAAAGACT-GAAGCTTG
* * ** *
388279 TATATCGTTGTA-ATGTCTTAACTTATCCAAGTTTTTACATTCGAAGATGGAAGTTTGAATAACA
65 TAAAGCGTTGTAGA-GT-TTAACTTATCCAAGTTAATACATTCGAAGATGAAAGTTTGAATAACA
*
388343 TTGAAATGTTTAAC
128 TTAAAATGTTTAAC
388357 TTATCCCAGT
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
147 2 0.02
148 29 0.24
149 89 0.74
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.37
Consensus pattern (148 bp):
GAAGTTTGAATAACGTTGTAAAGTTTAACTTACCCAAGTTGATACATTCAAAGACTGAAGCTTGT
AAAGCGTTGTAGAGTTTAACTTATCCAAGTTAATACATTCGAAGATGAAAGTTTGAATAACATTA
AAATGTTTAACAAAGATA
Found at i:388319 original size:56 final size:56
Alignment explanation
Indices: 388208--388473 Score: 315
Period size: 56 Copynumber: 4.8 Consensus size: 56
388198 AATGTCTTAA
* * * *
388208 CAAAGATAGAAGTTTGAATAACGTTGTAAAGTTTAACTTATCGAAGTTGATACATT
1 CAAAGATGGAAGTTTGAATAACGTTGTAATGTTTAACTTATCCAAGTTGTTACATT
* * *
388264 C-AAGATGGAAGTTTGTATATCGTTGTAATGTCTTAACTTATCCAAGTTTTTACATT
1 CAAAGATGGAAGTTTGAATAACGTTGTAATGT-TTAACTTATCCAAGTTGTTACATT
* * * *
388320 CGAAGATGGAAGTTTGAATAACATTGAAATGTTTAACTTATCCCAGTTGTTACATT
1 CAAAGATGGAAGTTTGAATAACGTTGTAATGTTTAACTTATCCAAGTTGTTACATT
*
388376 CAAAGATGGAAGTTTAAATAGA-GTTGTAGAT-TTTAACTTATCCAAGTTGTTACATT
1 CAAAGATGGAAGTTTGAATA-ACGTTGTA-ATGTTTAACTTATCCAAGTTGTTACATT
* * * * *
388432 AAAATATGTAAGTTTGAATAGCATTGTAGA-GTTTAACTTATC
1 CAAAGATGGAAGTTTGAATAACGTTGTA-ATGTTTAACTTATC
388474 TAGTTTAAGG
Statistics
Matches: 180, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
55 26 0.14
56 125 0.69
57 29 0.16
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (56 bp):
CAAAGATGGAAGTTTGAATAACGTTGTAATGTTTAACTTATCCAAGTTGTTACATT
Found at i:388353 original size:261 final size:261
Alignment explanation
Indices: 387976--388456 Score: 632
Period size: 261 Copynumber: 1.8 Consensus size: 261
387966 CGAAGTAAAG
*
387976 AGTTTAACCTATCCAAGTTGTTACATTTAAAGATGGAAGTTTGGATAGCGTTATAGATTTTAACT
1 AGTTTAACCTATCCAAGTTGATACATTTAAAGATGGAAGTTTGGATAGCGTTATAGATTTTAACT
* * ** *
388041 TATCCAAGTCGTTGCGTTCAAAAATGGAAGTTTGAATAATGTTGTAATGTTTAACTT-GCCCTAG
66 TATCCAAGTCGTTACATTCAAAAATGGAAGTTTGAATAACATTGAAATGTTTAACTTAGCCC-AG
*
388105 TTGTTACATTCAAAGACT-GAAGCTTGT-AA-AGCGTTGTAGAGTTTAACTTATCCAAGTTAATA
130 TTGTTACATTCAAAGA-TGGAAG-TT-TAAATAGAGTTGTAGAGTTTAACTTATCCAAGTTAATA
* * *
388167 TATTACAAGATGAAATTTTGAATAGCATTAAAATGTCTTAACAAAGATAGAAGTTTGAATAACGT
192 CATTAAAAGATGAAAGTTTGAATAGCATTAAAATGTCTTAACAAAGATAGAAGTTTGAATAACGT
388232 TGTAA
257 TGTAA
* * * * * *
388237 AGTTTAACTTATCGAAGTTGATACA-TTCAAGATGGAAGTTTGTATATCGTTGTA-ATGTCTTAA
1 AGTTTAACCTATCCAAGTTGATACATTTAAAGATGGAAGTTTGGATAGCGTTATAGAT-T-TTAA
** * * *
388300 CTTATCCAAGTTTTTACATTCGAAGATGGAAGTTTGAATAACATTGAAATGTTTAACTTATCCCA
64 CTTATCCAAGTCGTTACATTCAAAAATGGAAGTTTGAATAACATTGAAATGTTTAACTTAGCCCA
* **
388365 GTTGTTACATTCAAAGATGGAAGTTTAAATAGAGTTGTAGATTTTAACTTATCCAAGTTGTTACA
129 GTTGTTACATTCAAAGATGGAAGTTTAAATAGAGTTGTAGAGTTTAACTTATCCAAGTTAATACA
* *
388430 TTAAAATATGTAAGTTTGAATAGCATT
194 TTAAAAGATGAAAGTTTGAATAGCATT
388457 GTAGAGTTTA
Statistics
Matches: 188, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
259 3 0.02
260 31 0.16
261 151 0.80
262 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (261 bp):
AGTTTAACCTATCCAAGTTGATACATTTAAAGATGGAAGTTTGGATAGCGTTATAGATTTTAACT
TATCCAAGTCGTTACATTCAAAAATGGAAGTTTGAATAACATTGAAATGTTTAACTTAGCCCAGT
TGTTACATTCAAAGATGGAAGTTTAAATAGAGTTGTAGAGTTTAACTTATCCAAGTTAATACATT
AAAAGATGAAAGTTTGAATAGCATTAAAATGTCTTAACAAAGATAGAAGTTTGAATAACGTTGTA
A
Found at i:388532 original size:15 final size:15
Alignment explanation
Indices: 388512--388565 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
388502 AATTGGTTTT
388512 CTGGAAAATGAATTA
1 CTGGAAAATGAATTA
388527 CTGGAAAATGAATTA
1 CTGGAAAATGAATTA
**
388542 CTGGAATTTGAATT-
1 CTGGAAAATGAATTA
388556 CTGGAAAATG
1 CTGGAAAATG
388566 TTTTCCGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
14 8 0.23
15 27 0.77
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (15 bp):
CTGGAAAATGAATTA
Found at i:388968 original size:29 final size:29
Alignment explanation
Indices: 388918--389098 Score: 117
Period size: 29 Copynumber: 6.6 Consensus size: 29
388908 TTAAATATCT
* * *
388918 TTATTAAA-ATATTATTAGATTATTATTA
1 TTATTAAATATATAATAATATTATTATTA
*
388946 TTATTAAATATATAATAATATTA-T-TCA
1 TTATTAAATATATAATAATATTATTATTA
*
388973 TTATTAAATATATAA-AATTTTATTATATA
1 TTATTAAATATATAATAATATTATTAT-TA
* *
389002 TTATTAAATA-AAAAT-ATAATATCTA-TA
1 TTATTAAATATATAATAATATTAT-TATTA
*
389029 -TATTATA-ATATAAT--TGATTATTTATTA
1 TTATTAAATATATAATAAT-ATTA-TTATTA
389056 TAATATTAAA-A-AT-ATAATATTA-TATTA
1 T--TATTAAATATATAATAATATTATTATTA
389083 TTA-TAAATAT-TAATAA
1 TTATTAAATATATAATAA
389099 ATATATTTTA
Statistics
Matches: 122, Mismatches: 13, Indels: 38
0.71 0.08 0.22
Matches are distributed among these distances:
24 4 0.03
25 6 0.05
26 25 0.20
27 29 0.24
28 20 0.16
29 30 0.25
30 8 0.07
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
TTATTAAATATATAATAATATTATTATTA
Found at i:389039 original size:8 final size:8
Alignment explanation
Indices: 389016--389094 Score: 53
Period size: 8 Copynumber: 10.2 Consensus size: 8
389006 TAAATAAAAA
389016 TATAATAT
1 TATAATAT
389024 CTAT-ATAT
1 -TATAATAT
389032 TATAATA-
1 TATAATAT
*
389039 TA-ATTGAT
1 TATAAT-AT
*
389047 TAT-TTAT
1 TATAATAT
389054 TATAATAT
1 TATAATAT
*
389062 TA-AA-AA
1 TATAATAT
389068 TATAATAT
1 TATAATAT
*
389076 TATATTAT
1 TATAATAT
389084 TATAAATAT
1 TAT-AATAT
389093 TA
1 TA
389095 ATAAATATAT
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
6 5 0.09
7 15 0.27
8 27 0.48
9 9 0.16
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (8 bp):
TATAATAT
Found at i:389071 original size:31 final size:32
Alignment explanation
Indices: 389028--389103 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 32
389018 TAATATCTAT
389028 ATATT-AT-AATATAATTGATTAT-TTATTAT-A
1 ATATTAATAAATATAA-T-ATTATATTATTATAA
389058 ATATTAA-AAATATAATATTATATTATTATAA
1 ATATTAATAAATATAATATTATATTATTATAA
389089 ATATTAATAAATATA
1 ATATTAATAAATATA
389104 TTTTAAATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
29 5 0.12
30 13 0.32
31 16 0.39
32 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (32 bp):
ATATTAATAAATATAATATTATATTATTATAA
Found at i:389076 original size:22 final size:23
Alignment explanation
Indices: 389051--389097 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
389041 ATTGATTATT
389051 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
389073 TATTATATTATTATAAATATTAA
1 TATTATAATATTAAAAATATTAA
389096 TA
1 TA
389098 AATATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:389102 original size:22 final size:22
Alignment explanation
Indices: 389058--389114 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
389048 ATTTATTATA
* *
389058 ATATTAAAAATA-TAATATTAT
1 ATATTATAAATATTAATATAAT
389079 ATTATTATAAATATTAATA-AAT
1 A-TATTATAAATATTAATATAAT
*
389101 ATATTTTAAATATT
1 ATATTATAAATATT
389115 TTAATAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 13 0.42
22 13 0.42
23 5 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTATAAATATTAATATAAT
Found at i:389103 original size:24 final size:23
Alignment explanation
Indices: 389076--389167 Score: 73
Period size: 24 Copynumber: 3.8 Consensus size: 23
389066 AATATAATAT
389076 TATATTATTATAAATATTAATAAA
1 TATATT-TTATAAATATTAATAAA
* *
389100 TATATTTTA-AATATTTTAATAAT
1 TATATTTTATAA-ATATTAATAAA
389123 TAATATTTTGATGAAA-ATTATATTAAA
1 T-ATATTTT-AT-AAATATTA-A-TAAA
*
389150 -ATATTTTATTAATATTAA
1 TATATTTTATAAATATTAA
389168 ATTCATAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
22 2 0.04
23 16 0.29
24 19 0.35
25 11 0.20
26 2 0.04
27 5 0.09
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TATATTTTATAAATATTAATAAA
Found at i:389114 original size:52 final size:52
Alignment explanation
Indices: 388994--389106 Score: 133
Period size: 52 Copynumber: 2.1 Consensus size: 52
388984 ATAAAATTTT
* **
388994 ATTATATATTATTAA-A-TAAAAATATAATATCTATATATTATAATATAATTG
1 ATTATTTATTA-TAATATTAAAAATATAATATCTATATATTATAATATAATAA
389045 ATTATTTATTATAATATTAAAAATATAATAT-TATATTATTATAAATATTAATAA
1 ATTATTTATTATAATATTAAAAATATAATATCTATA-TATTAT-AATA-TAATAA
389099 ATATATTT
1 AT-TATTT
389107 TAAATATTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
50 3 0.06
51 15 0.28
52 20 0.38
53 4 0.08
54 6 0.11
55 5 0.09
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (52 bp):
ATTATTTATTATAATATTAAAAATATAATATCTATATATTATAATATAATAA
Found at i:389547 original size:56 final size:56
Alignment explanation
Indices: 389475--389714 Score: 290
Period size: 56 Copynumber: 4.3 Consensus size: 56
389465 AACATACCCT
* *
389475 AAGTTGTTACATTCAAAGATGAAAGCTTGAATAACATTTTAATGTTTAACTTATCC
1 AAGTTGTTACATTCAAAGATGAAAGTTTGAATAACATTGTAATGTTTAACTTATCC
* * * * * *
389531 AAGTTGTTACAATCAAAAATGAAAGTTTTAACAACGTTGTAATGTTTAACTTATCT
1 AAGTTGTTACATTCAAAGATGAAAGTTTGAATAACATTGTAATGTTTAACTTATCC
* * *
389587 AAGTTGTTGCATTCAAAGATGGAAGTTTGAATAATATTGTAATGTTT-ACTTATCC
1 AAGTTGTTACATTCAAAGATGAAAGTTTGAATAACATTGTAATGTTTAACTTATCC
* * *
389642 AATTTATTACATTCAAAGATGGAAA-TTTGAA-AAGAGTTGTAGA-GTTTAACTTATCC
1 AAGTTGTTACATTCAAAGAT-GAAAGTTTGAATAACA-TTGTA-ATGTTTAACTTATCC
*
389698 AATTTGTTACATTCAAA
1 AAGTTGTTACATTCAAA
389715 AATGGAATAA
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
54 3 0.02
55 39 0.25
56 115 0.73
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (56 bp):
AAGTTGTTACATTCAAAGATGAAAGTTTGAATAACATTGTAATGTTTAACTTATCC
Found at i:389705 original size:111 final size:112
Alignment explanation
Indices: 389475--389721 Score: 313
Period size: 111 Copynumber: 2.2 Consensus size: 112
389465 AACATACCCT
* * *
389475 AAGTTGTTACATTCAAAGATGAAAGCTTGAATAACATTTTAATGTTTAACTTATCCAAGTTGTTA
1 AAGTTGTTACATTCAAAGATGGAAGCTTGAATAACATTGTAATGTTTAACTTATCCAAGTTATTA
* * *
389540 CAATCAAAAATGAAAGTTTTAACAACGTTGTAATGTTTAACTTATCT
66 CAATCAAAAATGAAAGTTTGAACAAAGTTGTAATGTTTAACTTATCC
* * * *
389587 AAGTTGTTGCATTCAAAGATGGAAGTTTGAATAATATTGTAATGTTT-ACTTATCCAATTTATTA
1 AAGTTGTTACATTCAAAGATGGAAGCTTGAATAACATTGTAATGTTTAACTTATCCAAGTTATTA
* *
389651 CATTCAAAGATGGAAA-TTTGAA-AAGAGTTGTAGA-GTTTAACTTATCC
66 CAATCAAAAAT-GAAAGTTTGAACAA-AGTTGTA-ATGTTTAACTTATCC
* *
389698 AATTTGTTACATTCAAAAATGGAA
1 AAGTTGTTACATTCAAAGATGGAA
389722 TAACTTGGAT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
110 2 0.02
111 68 0.58
112 47 0.40
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (112 bp):
AAGTTGTTACATTCAAAGATGGAAGCTTGAATAACATTGTAATGTTTAACTTATCCAAGTTATTA
CAATCAAAAATGAAAGTTTGAACAAAGTTGTAATGTTTAACTTATCC
Found at i:389789 original size:56 final size:56
Alignment explanation
Indices: 389723--390031 Score: 204
Period size: 56 Copynumber: 5.6 Consensus size: 56
389713 AAAATGGAAT
*
389723 AACTTGGATAAGTTAAACTCTACAATGCTATTCAAAATTCAATCTTTGAATGTATC
1 AACTTGGATAAGTTAAACTCTACAATGCTATTCAAAATTCAATCTTTGAATGTAAC
* * *
389779 AACTTGGATAAGTTAAACAT-TACAATGTTATTCAAACTTCCATCTTTGAATGTAAC
1 AACTTGGATAAGTTAAAC-TCTACAATGCTATTCAAAATTCAATCTTTGAATGTAAC
* * * *
389835 AACATGGATAAGTTAATACAT-TAC-ATCCCCTACTTCCTAGAA-TCAA----TGACATGT-TC
1 AACTTGGATAAGTTAA-AC-TCTACAAT--GCTA-TT-C-AAAATTCAATCTTTGA-ATGTAAC
* * *
389891 GA-TT--ATCCCA-TTAAGACACTA-AATG-TATTACGAAAATT-ATATCTTTGAATGTAAC
1 AACTTGGAT--AAGTTAA-ACTCTACAATGCTATT-C-AAAATTCA-ATCTTTGAATGTAAC
* * * *
389946 AACTTGGAAAAGTTAAACTCTACAA--CTATTCAAACTTCCATATTTGAATGTAAC
1 AACTTGGATAAGTTAAACTCTACAATGCTATTCAAAATTCAATCTTTGAATGTAAC
* *
390000 AATTTGGATAAGTTAAACTCTACAACGCTATT
1 AACTTGGATAAGTTAAACTCTACAATGCTATT
390032 TAAACTCTAT
Statistics
Matches: 195, Mismatches: 30, Indels: 56
0.69 0.11 0.20
Matches are distributed among these distances:
50 7 0.04
51 4 0.02
53 2 0.01
54 56 0.29
55 8 0.04
56 89 0.46
57 18 0.09
58 3 0.02
59 2 0.01
60 4 0.02
61 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (56 bp):
AACTTGGATAAGTTAAACTCTACAATGCTATTCAAAATTCAATCTTTGAATGTAAC
Found at i:392072 original size:2 final size:2
Alignment explanation
Indices: 392065--392110 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
392055 TCACTTATGA
392065 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
392107 AT AT
1 AT AT
392111 GAATGCTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:398588 original size:2 final size:2
Alignment explanation
Indices: 398581--398644 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
398571 TCACTTATGG
398581 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
398623 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
398645 TAACGTTAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:410996 original size:45 final size:46
Alignment explanation
Indices: 410889--410996 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
410879 GATACATGGC
*
410889 TGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCA
1 TGGTGCATCGATGCATGAAATGCATTCGATG-TTTCATAAAAT-CTCA
* **
410937 --GTGCATCGATGCATGAAATGCATTTGATG-TTCAATTTAAT-TCA
1 TGGTGCATCGATGCATGAAATGCATTCGATGTTTC-ATAAAATCTCA
410980 TGGTGCATCGATGCATG
1 TGGTGCATCGATGCATG
410997 GATTGGTGCA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
43 3 0.06
44 3 0.06
45 20 0.38
46 27 0.51
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (46 bp):
TGGTGCATCGATGCATGAAATGCATTCGATGTTTCATAAAATCTCA
Found at i:417421 original size:20 final size:21
Alignment explanation
Indices: 417383--417422 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
417373 GAAGTTTTAA
* *
417383 GATCATCAATTTTCTTTTGAT
1 GATCATCAATTTACCTTTGAT
417404 GATCATC-ATTTACCTTTGA
1 GATCATCAATTTACCTTTGA
417423 AAGTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.47
Consensus pattern (21 bp):
GATCATCAATTTACCTTTGAT
Found at i:418193 original size:17 final size:17
Alignment explanation
Indices: 418171--418203 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
418161 TGCCATGATT
418171 TTGGAAGTGAGTAAACG
1 TTGGAAGTGAGTAAACG
418188 TTGGAAGTGAGTAAAC
1 TTGGAAGTGAGTAAAC
418204 TAACTTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.33, T:0.24
Consensus pattern (17 bp):
TTGGAAGTGAGTAAACG
Found at i:419651 original size:65 final size:65
Alignment explanation
Indices: 419516--419675 Score: 200
Period size: 65 Copynumber: 2.5 Consensus size: 65
419506 TGCACTAAGA
* * * *
419516 GTGCATCGATGCATCAAGTGCATTCGATG-ATTCAAAATAGCCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGATG
* * *
419580 GTGCATCGATGCGTCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCAT-GAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCATGGAT
*
419643 AT
65 -G
*
419645 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
419676 CAATTTAATT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 29 0.35
65 51 0.61
66 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGGATG
Found at i:419708 original size:110 final size:110
Alignment explanation
Indices: 419578--419813 Score: 463
Period size: 110 Copynumber: 2.1 Consensus size: 110
419568 GATGCATGGC
*
419578 TGGTGCATCGATGCGTCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGAT
1 TGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGAT
419643 ATGTGCATCGATGCATGAAATGCATTCGATGTTCAATTTAATTCA
66 ATGTGCATCGATGCATGAAATGCATTCGATGTTCAATTTAATTCA
419688 TGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGAT
1 TGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGAT
419753 ATGTGCATCGATGCATGAAATGCATTCGATGTTCAATTTAATTCA
66 ATGTGCATCGATGCATGAAATGCATTCGATGTTCAATTTAATTCA
419798 TGGTGCATCGATGCAT
1 TGGTGCATCGATGCAT
419814 GGATTGGTCC
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 125 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (110 bp):
TGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGAT
ATGTGCATCGATGCATGAAATGCATTCGATGTTCAATTTAATTCA
Found at i:419827 original size:65 final size:64
Alignment explanation
Indices: 419687--419835 Score: 171
Period size: 65 Copynumber: 2.3 Consensus size: 64
419677 AATTTAATTC
419687 ATGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGA
1 ATGGTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGA
419752 T
64 T
* **
419753 AT-GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATG
1 ATGGTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCAT-
419815 GAT
62 GAT
* *
419818 -TGGTCCATCGGTGCATCA
1 ATGGTGCATCGATGCATCA
419836 CTCTGAAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.04
63 3 0.04
64 20 0.28
65 44 0.61
66 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (64 bp):
ATGGTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGAT
Found at i:425338 original size:24 final size:24
Alignment explanation
Indices: 425319--425372 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
425309 ACATATTTGT
425319 ATATATAATATACTAAATATATAA
1 ATATATAATATACTAAATATATAA
* * *
425343 ATATATAATGTACTATATA-ATAT
1 ATATATAATATACTAAATATATAA
425366 ATATATA
1 ATATATA
425373 CATAAGATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (24 bp):
ATATATAATATACTAAATATATAA
Found at i:425361 original size:12 final size:11
Alignment explanation
Indices: 425318--425372 Score: 56
Period size: 12 Copynumber: 4.7 Consensus size: 11
425308 AACATATTTG
425318 TATATATAATA
1 TATATATAATA
*
425329 TACTAAATATATA
1 TA-TATATA-ATA
* *
425342 AATATATAATG
1 TATATATAATA
425353 TACTATATAATA
1 TA-TATATAATA
425365 TATATATA
1 TATATATA
425373 CATAAGATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
11 11 0.31
12 20 0.57
13 4 0.11
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (11 bp):
TATATATAATA
Found at i:426034 original size:32 final size:32
Alignment explanation
Indices: 425992--426074 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
425982 TAGCATGATA
*
425992 TCCTTTGTCGTGAAGTTGAAATCATT-CTTGAC
1 TCCTTCGTCGTGAAGTTGAAATC-TTGCTTGAC
*
426024 TCCTTCGTCGTGAAGTTGAAATCTTGGTTGAC
1 TCCTTCGTCGTGAAGTTGAAATCTTGCTTGAC
* *
426056 TCATTCGTCGTGCAGTTGA
1 TCCTTCGTCGTGAAGTTGA
426075 GTCAAACTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 2 0.04
32 44 0.96
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (32 bp):
TCCTTCGTCGTGAAGTTGAAATCTTGCTTGAC
Found at i:437632 original size:14 final size:14
Alignment explanation
Indices: 437613--437641 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
437603 GAAATAAGAT
437613 AAAATAAAAATATA
1 AAAATAAAAATATA
437627 AAAATAAAAATATA
1 AAAATAAAAATATA
437641 A
1 A
437642 CGGAATTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATAAAAATATA
Found at i:441353 original size:12 final size:12
Alignment explanation
Indices: 441336--441370 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
441326 GTCTGCCCGC
441336 GTCGTGCCCATA
1 GTCGTGCCCATA
*
441348 GTCGTGCCCACA
1 GTCGTGCCCATA
441360 GTCGTGCCCAT
1 GTCGTGCCCAT
441371 GTCTCCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.14, C:0.37, G:0.26, T:0.23
Consensus pattern (12 bp):
GTCGTGCCCATA
Found at i:443089 original size:13 final size:13
Alignment explanation
Indices: 443071--443095 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
443061 GTTCCATATT
443071 TCAACACAATGAA
1 TCAACACAATGAA
443084 TCAACACAATGA
1 TCAACACAATGA
443096 TATGAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (13 bp):
TCAACACAATGAA
Found at i:445229 original size:21 final size:20
Alignment explanation
Indices: 445205--445270 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
445195 TCCTCTTTCA
445205 TTGTTCGTCGTTCTTCGTTGC
1 TTGTT-GTCGTTCTTCGTTGC
445226 TTGTTGT-GTCTCTGTCGTTG-
1 TTGTTGTCGT-TCT-TCGTTGC
*
445246 -T-TTGTCATTCTTCGTTGC
1 TTGTTGTCGTTCTTCGTTGC
445264 TTGTTGT
1 TTGTTGT
445271 GTCTCTGTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
17 6 0.16
18 7 0.18
19 5 0.13
20 9 0.24
21 11 0.29
ACGTcount: A:0.02, C:0.18, G:0.24, T:0.56
Consensus pattern (20 bp):
TTGTTGTCGTTCTTCGTTGC
Found at i:445257 original size:38 final size:38
Alignment explanation
Indices: 445197--445310 Score: 183
Period size: 38 Copynumber: 3.0 Consensus size: 38
445187 TTTTTTTGTC
* *
445197 CTCTTTCATTGTTCGTCGTTCTTCGTTGCTTGTTGTGT
1 CTCTGTCATTGTTCGTCATTCTTCGTTGCTTGTTGTGT
* *
445235 CTCTGTCGTTGTTTGTCATTCTTCGTTGCTTGTTGTGT
1 CTCTGTCATTGTTCGTCATTCTTCGTTGCTTGTTGTGT
*
445273 CTCTGTCATTGTTCATCATTCTTCGTTGCTTGTTGTGT
1 CTCTGTCATTGTTCGTCATTCTTCGTTGCTTGTTGTGT
445311 ATCTATTGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 69 1.00
ACGTcount: A:0.04, C:0.20, G:0.21, T:0.54
Consensus pattern (38 bp):
CTCTGTCATTGTTCGTCATTCTTCGTTGCTTGTTGTGT
Found at i:445785 original size:7 final size:7
Alignment explanation
Indices: 445760--445797 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
445750 TAAAAATAAT
445760 ATATATA
1 ATATATA
445767 ATAATATA
1 AT-ATATA
*
445775 ATATATT
1 ATATATA
445782 ATATATA
1 ATATATA
445789 ATATATA
1 ATATATA
445796 AT
1 AT
445798 GAAAATGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 21 0.75
8 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATATATA
Found at i:446928 original size:17 final size:17
Alignment explanation
Indices: 446906--446958 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
446896 AATTAAGAGT
446906 TAGTTTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* * *
446923 TAGTTTGATGAATGGAC
1 TAGTTTAATAAATGAAC
* *
446940 AAGTTTAATTAATGAAC
1 TAGTTTAATAAATGAAC
446957 TA
1 TA
446959 CTTCCCTAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.36
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Found at i:450638 original size:17 final size:17
Alignment explanation
Indices: 450616--450668 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
450606 TATTAAGAGT
450616 TAGTTTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* *
450633 TAGTTTGATGAATGAAC
1 TAGTTTAATAAATGAAC
*
450650 TAGTTTAATTAATGAAC
1 TAGTTTAATAAATGAAC
450667 TA
1 TA
450669 CTTCCCTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.38
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Found at i:450681 original size:34 final size:34
Alignment explanation
Indices: 450616--450686 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
450606 TATTAAGAGT
* ** *
450616 TAGTTTAATAAATGAACTAGTTTGATGAATGAAC
1 TAGTTTAATAAATGAACTACTTCCATAAATGAAC
* *
450650 TAGTTTAATTAATGAACTACTTCCCTAAATGAAC
1 TAGTTTAATAAATGAACTACTTCCATAAATGAAC
450684 TAG
1 TAG
450687 ATGATTTAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (34 bp):
TAGTTTAATAAATGAACTACTTCCATAAATGAAC
Found at i:456868 original size:20 final size:20
Alignment explanation
Indices: 456820--456856 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
456810 TAACATATTT
*
456820 AATAAATATATACATATATA
1 AATAACTATATACATATATA
456840 AATAACTATATA-ATATA
1 AATAACTATATACATATA
456857 ACTAAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.35
Consensus pattern (20 bp):
AATAACTATATACATATATA
Found at i:457125 original size:18 final size:18
Alignment explanation
Indices: 457104--457139 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
457094 AAAATATTTT
457104 TATAT-AAATA-CATATA
1 TATATAAAATACCATATA
457120 TATATAAAATACCATATA
1 TATATAAAATACCATATA
457138 TA
1 TA
457140 AACCCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 5 0.28
18 8 0.44
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (18 bp):
TATATAAAATACCATATA
Found at i:457210 original size:23 final size:23
Alignment explanation
Indices: 457184--457228 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
457174 TTAAAATAAA
457184 TACATACATACATATATATATAC
1 TACATACATACATATATATATAC
*
457207 TACATACATATATATATATATA
1 TACATACATACATATATATATA
457229 TATTGATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (23 bp):
TACATACATACATATATATATAC
Found at i:457212 original size:19 final size:20
Alignment explanation
Indices: 457183--457224 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
457173 TTTAAAATAA
457183 ATACATACATACATATATAT
1 ATACATACATACATATATAT
457203 ATAC-TACATACATATATAT
1 ATACATACATACATATATAT
457222 ATA
1 ATA
457225 TATATATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (20 bp):
ATACATACATACATATATAT
Found at i:460579 original size:25 final size:24
Alignment explanation
Indices: 460550--460663 Score: 122
Period size: 25 Copynumber: 4.6 Consensus size: 24
460540 ATTAACTAGC
460550 ATAACACAATTAATAGTAACAATTA
1 ATAACACAATTAATA-TAACAATTA
* * *
460575 CTAACACAACTAATATTACAAATTA
1 ATAACACAATTAATATAAC-AATTA
460600 ATAACACAGA-TAATACTAACAATTA
1 ATAACACA-ATTAATA-TAACAATTA
* *
460625 ATAACACACTTAATATTCACAATTA
1 ATAACACAATTAATA-TAACAATTA
*
460650 ATAAAACAATTAAT
1 ATAACACAATTAAT
460664 GTTCATAATT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
24 3 0.04
25 68 0.91
26 4 0.05
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.28
Consensus pattern (24 bp):
ATAACACAATTAATATAACAATTA
Found at i:460630 original size:50 final size:50
Alignment explanation
Indices: 460550--460663 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
460540 ATTAACTAGC
* *
460550 ATAACACAATTAATAGTAACAATTACTAACACAAC-TAATATT-ACAAATTA
1 ATAACACAATTAATACTAACAATTAATAACAC-ACTTAATATTCAC-AATTA
460600 ATAACACAGA-TAATACTAACAATTAATAACACACTTAATATTCACAATTA
1 ATAACACA-ATTAATACTAACAATTAATAACACACTTAATATTCACAATTA
*
460650 ATAAAACAATTAAT
1 ATAACACAATTAAT
460664 GTTCATAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
49 3 0.05
50 51 0.89
51 3 0.05
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.28
Consensus pattern (50 bp):
ATAACACAATTAATACTAACAATTAATAACACACTTAATATTCACAATTA
Found at i:460639 original size:12 final size:12
Alignment explanation
Indices: 460550--460663 Score: 83
Period size: 12 Copynumber: 9.2 Consensus size: 12
460540 ATTAACTAGC
460550 ATAACACAATTA
1 ATAACACAATTA
460562 ATAGTA-ACAATTA
1 ATA--ACACAATTA
* *
460575 CTAACACAACTA
1 ATAACACAATTA
460587 ATATTACA-AATTA
1 ATA--ACACAATTA
460600 ATAACACAGA-TA
1 ATAACACA-ATTA
460612 AT-ACTAACAATTA
1 ATAAC--ACAATTA
*
460625 ATAACACACTTA
1 ATAACACAATTA
*
460637 ATATTCACAATTA
1 ATA-ACACAATTA
*
460650 ATAAAACAATTA
1 ATAACACAATTA
460662 AT
1 AT
460664 GTTCATAATT
Statistics
Matches: 81, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
11 6 0.07
12 35 0.43
13 34 0.42
14 6 0.07
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.28
Consensus pattern (12 bp):
ATAACACAATTA
Found at i:460668 original size:25 final size:25
Alignment explanation
Indices: 460550--460677 Score: 107
Period size: 25 Copynumber: 5.1 Consensus size: 25
460540 ATTAACTAGC
* * *
460550 ATAACACAATTAATAGTAACAATTA
1 ATAAAACAATTAATATTCACAATTA
* * *
460575 CTAACACAACTAATATT-ACAAATTA
1 ATAAAACAATTAATATTCAC-AATTA
* * *
460600 ATAACACAGA-TAATACTAACAATTA
1 ATAAAACA-ATTAATATTCACAATTA
* *
460625 ATAACACACTTAATATTCACAATTA
1 ATAAAACAATTAATATTCACAATTA
* *
460650 ATAAAACAATTAATGTTCATAATTA
1 ATAAAACAATTAATATTCACAATTA
460675 ATA
1 ATA
460678 TTCTTTGACC
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
24 2 0.02
25 82 0.94
26 3 0.03
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (25 bp):
ATAAAACAATTAATATTCACAATTA
Found at i:466327 original size:9 final size:9
Alignment explanation
Indices: 466313--466345 Score: 52
Period size: 8 Copynumber: 3.9 Consensus size: 9
466303 ATATTAATAA
466313 AAATAAAAT
1 AAATAAAAT
466322 AAATAAAAT
1 AAATAAAAT
466331 -AATAAAAT
1 AAATAAAAT
466339 AAA-AAAA
1 AAATAAAA
466346 GGCAACCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 12 0.52
9 11 0.48
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAATAAAAT
Found at i:466336 original size:17 final size:16
Alignment explanation
Indices: 466314--466345 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
466304 TATTAATAAA
466314 AATAAAATAAATAAAAT
1 AATAAAATAAA-AAAAT
466331 AATAAAATAAAAAAA
1 AATAAAATAAAAAAA
466346 GGCAACCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AATAAAATAAAAAAAT
Found at i:469455 original size:45 final size:45
Alignment explanation
Indices: 469356--469528 Score: 152
Period size: 45 Copynumber: 3.9 Consensus size: 45
469346 GAAGGATACT
* * * *
469356 ACTAAAAGGTTGACTCATTTTCGCAAGAGAGTCAAGAATAACACC
1 ACTAAAAGGTTGACTCATCTTCACGAGAAAGTCAAGAATAACACC
* * * ** * *
469401 ATTATAAGGTTGACTCCTCTTCGTGAGAAAGTCAAGAATTACAAC
1 ACTAAAAGGTTGACTCATCTTCACGAGAAAGTCAAGAATAACACC
* * * *
469446 GCTAAAAGGTTGACT--TCTTTCACGAGAATGTCAAAAACAACACC
1 ACTAAAAGGTTGACTCATC-TTCACGAGAAAGTCAAGAATAACACC
* * * *
469490 ACTAAAAGGTTGACTCATCTTAATGAGGAATTCAAGAAT
1 ACTAAAAGGTTGACTCATCTTCACGAGAAAGTCAAGAAT
469529 GACTATATTG
Statistics
Matches: 98, Mismatches: 27, Indels: 6
0.75 0.21 0.05
Matches are distributed among these distances:
43 2 0.02
44 33 0.34
45 61 0.62
46 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (45 bp):
ACTAAAAGGTTGACTCATCTTCACGAGAAAGTCAAGAATAACACC
Found at i:469731 original size:42 final size:42
Alignment explanation
Indices: 469535--469999 Score: 369
Period size: 42 Copynumber: 11.4 Consensus size: 42
469525 GAATGACTAT
* * * ** * *
469535 ATTGAACGATTGAATTCTCTTCACAATAAAGTTAATAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* * * * *
469577 ATTGAAATATTAACTACT-TTCACGAGGGAGTCAATAAT-AC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* * *
469617 ----AAAGATTAACTTCTCTTCATGAGGAAGTTAAGAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* * * *
469655 ACTGAAA-A---ACTCCTCTTCATGAGAAAGTCAAGAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* *
469693 ATTGAAATATTGACTTCTATTCACGAGGAAGTCAAGAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
*
469735 ATTGAAAGATTGA-TATATCTTCACGAAGG-AGTCAAGAATAAC
1 ATTGAAAGATTGACT-TCTCTTCACG-AGGAAGTCAAGAATAAC
* * *
469777 -TATGAAAGATTGACTCCTCTTCATGAGGGAGTCAATG-ATAAC
1 AT-TGAAAGATTGACTTCTCTTCACGAGGAAGTCAA-GAATAAC
* * * *
469819 A-TG-AGGA-TGACTCCTCTTCATGAGGGAGTCAAGAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
*
469858 ATTGAAAGATTGA-TTCTACTTCACGAGGAAGTCAAGAATAAAAAT
1 ATTGAAAGATTGACTTCT-CTTCACGAGGAAGTCAAGAAT---AAC
* * * *
469903 ATTGAACGATTGACTTCTCTTCATGAGAAAGTCAATAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
* * *
469945 ATTGAATGATTTAC-T-TCTTCACGAGGAAGCCAAGAATAAC
1 ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
469985 ATT-AGAAGATTGACT
1 ATTGA-AAGATTGACT
470000 CATTCTCAAG
Statistics
Matches: 346, Mismatches: 49, Indels: 57
0.77 0.11 0.13
Matches are distributed among these distances:
36 12 0.03
37 16 0.05
38 36 0.10
39 33 0.10
40 38 0.11
41 30 0.09
42 140 0.40
43 5 0.01
45 32 0.09
46 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (42 bp):
ATTGAAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAC
Found at i:483538 original size:14 final size:14
Alignment explanation
Indices: 483518--483567 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
483508 GACCTTAACC
483518 AAGTCAACTCATCT
1 AAGTCAACTCATCT
* *
483532 GAGTCAACTTATCT
1 AAGTCAACTCATCT
* *
483546 AAGTAAACTCGTCT
1 AAGTCAACTCATCT
483560 AAGTCAAC
1 AAGTCAAC
483568 CCATTGATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (14 bp):
AAGTCAACTCATCT
Found at i:483586 original size:13 final size:13
Alignment explanation
Indices: 483568--483609 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
483558 CTAAGTCAAC
*
483568 CCATTGATTTTGA
1 CCATTGACTTTGA
483581 CCATTGACTTTGA
1 CCATTGACTTTGA
483594 CCATTGACTTTGA
1 CCATTGACTTTGA
483607 CCA
1 CCA
483610 AAAAGTCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (13 bp):
CCATTGACTTTGA
Found at i:489042 original size:35 final size:35
Alignment explanation
Indices: 489002--489070 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
488992 AAGTCTCTAC
*
489002 AGGTTCA-ACTCGATCAAACTGGTAATTCCTTATAT
1 AGGTTCAGAC-CGATCAAACTAGTAATTCCTTATAT
*
489037 AGGTTCAGACCGATCAAGCTAGTAATTCCTTATA
1 AGGTTCAGACCGATCAAACTAGTAATTCCTTATA
489071 GAACTAAGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 29 0.94
36 2 0.06
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (35 bp):
AGGTTCAGACCGATCAAACTAGTAATTCCTTATAT
Found at i:495515 original size:3 final size:3
Alignment explanation
Indices: 495507--495595 Score: 146
Period size: 3 Copynumber: 29.7 Consensus size: 3
495497 AATATATATT
495507 TAA TAA TAA T-A TAA TAA T-A TAA TAA TAAA TAA TAA TAA TAA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TA-A
495552 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
495596 TGGGTAAAAA
Statistics
Matches: 82, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.05
3 72 0.88
4 6 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:496079 original size:113 final size:113
Alignment explanation
Indices: 495881--496670 Score: 1438
Period size: 113 Copynumber: 7.0 Consensus size: 113
495871 TTTCTTTAGA
*
495881 TGATGAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
*
495946 TGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAAATAATCCATCAAG
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
*
495994 TGATGAATTCAGACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
496059 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
496107 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
*
496172 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCTATCAAG
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
*
496220 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTCCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
496285 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
496333 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
*
496398 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATGATCCATCAAG
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
**
496446 TGATGAATTCATTCAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
496511 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
** *
496559 TGATGAATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
1 TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
* **
496624 TGAGTTCTTCTCATTATGAACTTTCTCTGG-AAATGTCAATCCATCAA
66 TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAAT-AATCCATCAA
496671 ATAATAATTT
Statistics
Matches: 659, Mismatches: 17, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
112 4 0.01
113 655 0.99
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.37
Consensus pattern (113 bp):
TGATGAATTCAGACAAAAGGTTGAATAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
TGAGTTCTTCTCATTATGAACCTTCTCTGGCAAAAATAATCCATCAAG
Found at i:497607 original size:83 final size:83
Alignment explanation
Indices: 497468--498399 Score: 1774
Period size: 83 Copynumber: 11.2 Consensus size: 83
497458 CTTATTTCTA
* *
497468 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
497533 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
497551 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
497616 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
497634 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
497699 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
497717 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
497782 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
497800 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
497865 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
497883 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
*
497948 GAACACTTCCATAAGATG
66 GAACACTTCCAGAAGATG
* *
497966 TTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCCGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
498031 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
498049 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
498114 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
498132 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCCGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
498197 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
498215 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCCGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
498280 GAACACTTCCAGAAGATG
66 GAACACTTCCAGAAGATG
*
498298 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCCGTCTAACCAGATCAGATAACTCAAA
1 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
* *
498363 GAACACTTCTAGAAGAAG
66 GAACACTTCCAGAAGATG
498381 CTATGAGCACATTCATCTT
1 CTATGAGCACATTCATCTT
498400 TTAGTTAATG
Statistics
Matches: 838, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 838 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (83 bp):
CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCTAACCAGATCAGATAACTCAAA
GAACACTTCCAGAAGATG
Found at i:499542 original size:1 final size:1
Alignment explanation
Indices: 499536--499607 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
499526 TGACCCTCCC
* * * * * * * * *
499536 TTTTTTTTCTTTTCTTTCTTCTTTTTTTTTCTTTCTTTTTTCTTTTTTTTTTCTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
499601 TTCTTTT
1 TTTTTTT
499608 CTTTCTTTTC
Statistics
Matches: 51, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:499561 original size:22 final size:21
Alignment explanation
Indices: 499536--499616 Score: 109
Period size: 19 Copynumber: 4.0 Consensus size: 21
499526 TGACCCTCCC
499536 TTTTTTTTCTTTTCTTTCTTCT
1 TTTTTTTTCTTTTCTTTCTT-T
499558 TTTTTTTTC-TTTC-TT-TTT
1 TTTTTTTTCTTTTCTTTCTTT
*
499576 TCTTTTTT-TTTTCTTTC-TT
1 TTTTTTTTCTTTTCTTTCTTT
499595 TTTTTTTTCTTTTCTTTCTTT
1 TTTTTTTTCTTTTCTTTCTTT
499616 T
1 T
499617 CTTCAAGCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
18 12 0.23
19 13 0.25
20 11 0.21
21 7 0.13
22 9 0.17
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTTCTTTTCTTTCTTT
Found at i:499612 original size:4 final size:4
Alignment explanation
Indices: 499541--499615 Score: 72
Period size: 4 Copynumber: 19.8 Consensus size: 4
499531 CTCCCTTTTT
*
499541 TTTC TTTTC TTTC -TTC TTT- TTT- TTTC TTTC TTT- TTTC TTT- TTTT
1 TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
*
499585 TTTC TTTC TTT- TTTT TTTC TTTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTT
499616 TCTTCAAGCA
Statistics
Matches: 62, Mismatches: 2, Indels: 13
0.81 0.03 0.17
Matches are distributed among these distances:
3 18 0.29
4 36 0.58
5 8 0.13
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (4 bp):
TTTC
Found at i:511572 original size:31 final size:32
Alignment explanation
Indices: 511513--511572 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
511503 TTTTTTTTTC
* *
511513 TTTCTCTCTCTCTCTCTCTGAGAGAGAGAATT
1 TTTCTCTCGCTCTCTCTCTGAGACAGAGAATT
511545 TTTCTCTCGCT-TCTCTCT-AGAACAGAGA
1 TTTCTCTCGCTCTCTCTCTGAG-ACAGAGA
511573 GAAGCCAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 2 0.08
31 13 0.52
32 10 0.40
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (32 bp):
TTTCTCTCGCTCTCTCTCTGAGACAGAGAATT
Found at i:511572 original size:33 final size:32
Alignment explanation
Indices: 511513--511575 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
511503 TTTTTTTTTC
* *
511513 TTTCTCTCTCTCTCTCTCTGAGAGAGAGAATT
1 TTTCTCTCGCTCTCTCTCTGACAGAGAGAATT
511545 TTTCTCTCGCT-TCTCTCTAGAACAGAGAGAA
1 TTTCTCTCGCTCTCTCTCT-G-ACAGAGAGAA
511576 GCCAGCCGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 7 0.26
32 11 0.41
33 9 0.33
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (32 bp):
TTTCTCTCGCTCTCTCTCTGACAGAGAGAATT
Found at i:512370 original size:3 final size:3
Alignment explanation
Indices: 512362--512426 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
512352 TTAATATATT
*
512362 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
512410 TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
512427 TGGGTAAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:512727 original size:19 final size:19
Alignment explanation
Indices: 512675--512719 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
512665 ACATGGATAG
*
512675 AATGCAATGCGAAAAGTAA
1 AATGCAATGCGAAAAATAA
512694 AATGCAATGCGAAAAATAA
1 AATGCAATGCGAAAAATAA
512713 AATGCAA
1 AATGCAA
512720 ATGCAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.56, C:0.11, G:0.18, T:0.16
Consensus pattern (19 bp):
AATGCAATGCGAAAAATAA
Found at i:517012 original size:181 final size:181
Alignment explanation
Indices: 516700--517069 Score: 577
Period size: 181 Copynumber: 2.0 Consensus size: 181
516690 ATTAAATTTT
* * *
516700 AAATATTAAATACATTATATATAACATATGGGCTCAATCCAAATCATTTAAAATCCAATTAATAA
1 AAATATTAAATACATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATAA
* *
516765 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAATTTTTT
66 TTTAAAATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAATTTTT
* * *
516830 ATTTTATAA-T-TATATTATTTAAATTATTTGTAAACTGTTTTTTTAATTAAA
131 ATTTTATAATTATATATTATTTAAATTAATTAT-AACT-TTTTTTGAATTAAA
*
516881 AAATATTAAATATATTATATATAACATATGGGCT-AAGCCCAAACCATTTAAAACCCAATTAATA
1 AAATATTAAATACATTATATATAACATATGGGCTCAA-CCCAAACCATTTAAAACCCAATTAATA
* *
516945 ATTTAAAATCC-ATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAATTTATCTAAAATTT
65 ATTTAAAATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATAT-AAATTT
517009 TTATTTTATAATTATATATTATTTAAATTAATTATAACTTTTTTTGAATTAAA
129 TTATTTTATAATTATATATTATTTAAATTAATTATAACTTTTTTTGAATTAAA
517062 AAATATTA
1 AAATATTA
517070 TTTTTTATAT
Statistics
Matches: 174, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
180 46 0.26
181 104 0.60
182 5 0.03
183 19 0.11
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (181 bp):
AAATATTAAATACATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATAA
TTTAAAATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAATTTTT
ATTTTATAATTATATATTATTTAAATTAATTATAACTTTTTTTGAATTAAA
Done.