genome.fa.s7767.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007767.1 Hibiscus syriacus cultivar Beakdansim tig00110039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  275075

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2607--2635	13	2.3	13	94	5	51	6	3	6	82	0.93
5645--5693	20	2.4	22	77	19	61	36	0	2	61	1.08
5667--5704	16	2.4	16	78	4	51	44	0	0	55	0.99
12249--12283	18	1.9	18	88	0	52	68	2	0	28	1.04
13297--13351	28	2.0	29	86	10	80	49	5	1	43	1.36
13577--13615	12	3.0	13	85	7	53	48	0	2	48	1.15
13581--13615	13	2.8	12	87	12	52	51	0	2	45	1.16
13871--13906	17	2.1	18	89	5	56	16	27	0	55	1.42
14104--14193	32	2.8	32	79	12	103	27	17	13	41	1.87
14114--14247	32	4.2	32	77	1	117	26	17	16	38	1.91
14718--14788	32	2.2	32	89	0	106	25	15	16	42	1.88
18795--18828	13	2.6	13	90	9	52	47	5	17	29	1.71
19293--19344	23	2.4	22	84	9	63	26	25	25	23	2.00
19303--19366	23	2.8	23	82	0	83	26	23	29	20	1.99
23515--23554	21	1.9	21	85	10	55	35	7	2	55	1.42
29053--29122	35	2.0	35	86	5	97	31	14	17	37	1.89
37971--38030	23	2.5	25	78	5	70	28	23	20	28	1.99
37971--38040	23	3.0	22	72	8	59	27	22	21	28	1.99
42562--42778	46	4.7	46	87	3	296	22	23	12	41	1.88
42780--43018	81	3.0	81	90	0	361	33	20	11	34	1.89
48250--48452	46	4.4	46	82	2	246	22	21	13	42	1.87
48450--48852	81	5.0	80	86	3	529	31	19	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58953--59023	21	3.3	21	70	14	72	33	18	21	26	1.96
58972--59053	23	3.7	23	68	12	71	28	19	21	30	1.98
58956--59058	44	2.3	44	96	0	188	29	21	20	29	1.98
63754--63800	21	2.2	21	84	3	58	6	19	0	74	1.03
63760--63793	14	2.3	15	90	5	52	0	20	0	79	0.73
63761--63794	10	3.3	10	84	8	50	0	17	0	82	0.67
63761--63802	21	2.0	21	95	0	75	2	16	0	80	0.81
83449--83621	90	1.9	90	94	2	303	35	12	5	46	1.66
88855--88895	14	2.9	14	92	3	64	31	29	7	31	1.85
94303--94344	21	2.0	21	86	13	59	4	11	2	80	0.95
104172--104212	18	2.3	18	86	0	55	19	19	41	19	1.91
107378--107428	19	2.6	21	78	15	63	45	5	11	37	1.65
110673--110737	11	5.9	11	78	16	55	0	20	1	78	0.83
110675--110738	27	2.3	28	84	10	87	0	20	1	78	0.84
110657--110739	18	4.8	18	75	21	79	2	18	3	75	1.05
111455--111505	19	2.6	21	78	15	63	45	5	13	35	1.68
113447--113478	15	2.1	15	100	0	64	37	12	6	43	1.68
114186--114222	15	2.5	15	86	0	56	78	5	16	0	0.93
115498--115552	24	2.3	25	81	6	60	32	16	21	29	1.95
118787--118826	2	20.0	2	100	0	80	50	0	0	50	1.00
120349--120412	27	2.4	27	78	5	76	43	0	10	45	1.39
120347--120412	28	2.4	28	78	12	75	43	0	10	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142101--142151	24	2.1	24	85	0	66	11	13	15	58	1.63
144041--144093	17	3.1	17	77	0	61	35	15	9	39	1.79
149227--149262	17	2.1	17	90	10	56	41	5	11	41	1.64
152110--152162	17	3.1	17	86	0	70	43	5	13	37	1.67
152113--152172	17	3.5	17	81	4	50	45	5	10	40	1.60
159375--159416	20	2.1	20	86	8	59	59	7	7	26	1.50
164233--164281	20	2.4	21	80	16	59	28	12	2	57	1.46
183007--183118	35	3.1	35	87	2	134	32	3	33	30	1.75
188727--188812	35	2.5	35	86	0	109	27	3	38	30	1.73
192053--192100	11	4.4	11	84	7	53	77	0	14	8	0.99
192059--192099	16	2.5	16	85	14	57	75	0	17	7	1.02
192059--192102	11	4.0	11	79	8	54	75	0	18	6	1.02
207891--207957	17	3.7	17	71	16	55	61	0	17	20	1.35
215991--216049	25	2.4	25	80	5	66	64	13	11	10	1.50
223799--224189	195	2.0	195	97	0	737	27	19	16	35	1.94
240459--240484	11	2.4	11	100	0	52	38	7	38	15	1.76
240501--240552	24	2.3	23	86	6	70	61	11	17	9	1.55
240510--240558	24	2.1	23	84	3	62	65	10	16	8	1.46
248816--248864	21	2.3	21	79	6	55	77	2	16	4	1.01
248890--248928	6	6.3	6	90	3	60	84	2	12	0	0.72
253093--253126	16	2.1	17	89	10	54	11	23	0	64	1.26
256467--256499	15	2.1	16	88	5	50	63	3	18	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269441--269478	15	2.4	16	87	12	53	78	0	21	0	0.74
269441--269480	13	3.1	12	86	13	53	77	0	22	0	0.77
269694--269725	13	2.3	15	89	10	50	15	21	0	62	1.32
272667--272709	20	2.2	20	87	8	61	55	9	6	27	1.57
272669--272720	20	2.3	22	75	21	54	51	9	7	30	1.62

Tables:   1

The End!