Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007768.1 Hibiscus syriacus cultivar Beakdansim tig00110044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2539099
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 11
Found at i:9775 original size:15 final size:15
Alignment explanation
Indices: 9755--9789 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
9745 TCTTAGGGTG
9755 ATTTTTAGTACAATC
1 ATTTTTAGTACAATC
9770 ATTTTTAGTACAATC
1 ATTTTTAGTACAATC
*
9785 GTTTT
1 ATTTT
9790 CACACTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (15 bp):
ATTTTTAGTACAATC
Found at i:14254 original size:19 final size:20
Alignment explanation
Indices: 14218--14255 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
14208 ATCTCTTTGT
*
14218 AATATTTATTCTATTAGTGA
1 AATATTTATTCTAGTAGTGA
*
14238 AATA-TTATTTTAGTAGTG
1 AATATTTATTCTAGTAGTG
14256 TTCGAGGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.50
Consensus pattern (20 bp):
AATATTTATTCTAGTAGTGA
Found at i:15351 original size:14 final size:14
Alignment explanation
Indices: 15334--15362 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15324 GTTTGTTTCA
15334 CGTAAAATGTTTTT
1 CGTAAAATGTTTTT
15348 CGTAAAATGTTTTT
1 CGTAAAATGTTTTT
15362 C
1 C
15363 TCATTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (14 bp):
CGTAAAATGTTTTT
Found at i:15626 original size:29 final size:31
Alignment explanation
Indices: 15581--15679 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 31
15571 TTAATCAAAA
*
15581 TATTAATTATTTAAAT-ATTTAA-A-TATATT
1 TATTAA-TATTTAAATAATATAATATTATATT
*
15610 TATTAATATTTCTAATAATATAATATTATATT
1 TATTAATATTT-AAATAATATAATATTATATT
*
15642 T-TTAATA-TTATAATAAAATAATCAATTATATT
1 TATTAATATTTA-AATAATATAAT--ATTATATT
15674 ATATTA
1 -TATTA
15680 TAATAATATA
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
28 5 0.09
29 9 0.16
30 17 0.30
31 7 0.12
32 15 0.26
33 1 0.02
34 3 0.05
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
TATTAATATTTAAATAATATAATATTATATT
Found at i:15630 original size:22 final size:22
Alignment explanation
Indices: 15610--15656 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
15600 TAAATATATT
15610 TATTAATATTTCTAATAATATAA
1 TATT-ATATTTCTAATAATATAA
* *
15633 TATTATATTTTTAATATTATAA
1 TATTATATTTCTAATAATATAA
15655 TA
1 TA
15657 AAATAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
TATTATATTTCTAATAATATAA
Found at i:15860 original size:23 final size:23
Alignment explanation
Indices: 15834--15878 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
15824 AATAATATTT
15834 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
15857 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
15879 ATATAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:20666 original size:19 final size:19
Alignment explanation
Indices: 20616--20668 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
20606 TAAAATACAG
*
20616 TCTGACCTCTGATTTATGC
1 TCTGAACTCTGATTTATGC
* *
20635 TCTGAACTTTGATATT-TGT
1 TCTGAACTCTGAT-TTATGC
*
20654 TCTGATCTCTGATTT
1 TCTGAACTCTGATTT
20669 CATTTCTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 2 0.07
19 24 0.86
20 2 0.07
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (19 bp):
TCTGAACTCTGATTTATGC
Found at i:21783 original size:2 final size:2
Alignment explanation
Indices: 21716--21764 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
21706 TATACCACGC
21716 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21758 AT AT AT A
1 AT AT AT A
21765 AGATGAATGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:30574 original size:2 final size:2
Alignment explanation
Indices: 30513--30555 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
30503 TATAGCACGC
*
30513 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30555 A
1 A
30556 AAGATGAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:31990 original size:31 final size:31
Alignment explanation
Indices: 31952--32045 Score: 109
Period size: 31 Copynumber: 3.0 Consensus size: 31
31942 CCCGAATGAC
* *
31952 CAGTCCATAAATTCTGAAGAACCTAGGTAAA
1 CAGTCCATATATTCTGAAGAACATAGGTAAA
* *
31983 CAGTCCATATGTT-TCGAAGAACATATGTAAA
1 CAGTCCATATATTCT-GAAGAACATAGGTAAA
* * *
32014 CAGTCCATATATCCCGAAGAACGTAGGTAAA
1 CAGTCCATATATTCTGAAGAACATAGGTAAA
32045 C
1 C
32046 CCTCAACCCT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
30 1 0.02
31 51 0.98
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (31 bp):
CAGTCCATATATTCTGAAGAACATAGGTAAA
Found at i:32808 original size:64 final size:64
Alignment explanation
Indices: 32702--32925 Score: 247
Period size: 64 Copynumber: 3.5 Consensus size: 64
32692 TAATGAAGGT
* * ** *
32702 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTAAT-ATTATTGATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGTATTCGATGT-ATCATTATTAATGGG
* ** *
32766 ATGCATCGATGCACTCCTTATGCATCGATGCACCAATTGTATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGTATTCGATGTATCATTATTAATGGG
* * * * **
32830 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGCATTTATT-TTAA-AAG
1 ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGTATTCGATGTA-TCATTATTAATGGG
**
32893 AGTGCATCGATGCACTACCAATGCATCGATGCA
1 A-TGCATCGATGCACTACTTATGCATCGATGCA
32926 CATTCATACA
Statistics
Matches: 137, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
63 3 0.02
64 130 0.95
65 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTATGCATCGATGCATAAATTGTATTCGATGTATCATTATTAATGGG
Found at i:40323 original size:66 final size:66
Alignment explanation
Indices: 40242--40373 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 66
40232 ACACTCCCTT
* * *
40242 TAACTATATTTTAACCATTAAGATCACTTGATGGATTCAACTCGATAAATTATTAGAGACTTTAA
1 TAACCATATTTTAACCATTAAGATCACTTGATAGATTCAACTCGATAAATTATTAGAGACTCTAA
40307 A
66 A
* * *
40308 TAACCATATTTTAACCATTAAGATCACTTGATATATTTAACTCGATAAATTATTAGATACTCTAA
1 TAACCATATTTTAACCATTAAGATCACTTGATAGATTCAACTCGATAAATTATTAGAGACTCTAA
40373 A
66 A
40374 AAAATTTGAC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.37
Consensus pattern (66 bp):
TAACCATATTTTAACCATTAAGATCACTTGATAGATTCAACTCGATAAATTATTAGAGACTCTAA
A
Found at i:42311 original size:6 final size:6
Alignment explanation
Indices: 42300--42344 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
42290 TGATTTGCAC
42300 GAAGGT GAAGGT GAAGGT GAAGGT GAAGGT GAAGGT GAAGGT GAA
1 GAAGGT GAAGGT GAAGGT GAAGGT GAAGGT GAAGGT GAAGGT GAA
42345 TTTTAGTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.49, T:0.16
Consensus pattern (6 bp):
GAAGGT
Found at i:42791 original size:15 final size:14
Alignment explanation
Indices: 42728--42803 Score: 50
Period size: 15 Copynumber: 5.2 Consensus size: 14
42718 ATCTTAACAA
42728 TTTGATAT-TTAAT
1 TTTGATATATTAAT
42741 TTT-ACTTGATATTAAT
1 TTTGA--T-ATATTAAT
*
42757 TGTGAT-TATTTAAAT
1 TTTGATATA-TT-AAT
*
42772 CTTGATAATATTAAT
1 TTTGAT-ATATTAAT
*
42787 TTTGATATATAAAT
1 TTTGATATATTAAT
42801 TTT
1 TTT
42804 AATAGTGATT
Statistics
Matches: 49, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
12 1 0.02
13 5 0.10
14 13 0.27
15 18 0.37
16 9 0.18
17 3 0.06
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (14 bp):
TTTGATATATTAAT
Found at i:42831 original size:19 final size:20
Alignment explanation
Indices: 42782--42831 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
42772 CTTGATAATA
42782 TTAATTTTGATATATAAATT
1 TTAATTTTGATATATAAATT
** *
42802 TTAATAGTGAT-TATTAATT
1 TTAATTTTGATATATAAATT
*
42821 TTAGTTTTGAT
1 TTAATTTTGAT
42832 GCTATTCATT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
TTAATTTTGATATATAAATT
Found at i:43446 original size:19 final size:18
Alignment explanation
Indices: 43418--43484 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
43408 GAATATCAAG
*
43418 TTAAATTTAAGCATCAAAA
1 TTAAAATTAAG-ATCAAAA
*
43437 TTAAAATTAATGATCAATA
1 TTAAAATTAA-GATCAAAA
*
43456 TTAAAATTTATGTATCAAAA
1 TTAAAA-TTAAG-ATCAAAA
*
43476 TTAATATTA
1 TTAAAATTA
43485 TCATAATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 25 0.62
20 15 0.38
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (18 bp):
TTAAAATTAAGATCAAAA
Found at i:43478 original size:20 final size:19
Alignment explanation
Indices: 43420--43479 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
43410 ATATCAAGTT
*
43420 AAATTTAAGCATCAAAATTA
1 AAATTTATG-ATCAAAATTA
* *
43440 AAATTAATGATCAATATTA
1 AAATTTATGATCAAAATTA
43459 AAATTTATGTATCAAAATTA
1 AAATTTATG-ATCAAAATTA
43479 A
1 A
43480 TATTATCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATTTATGATCAAAATTA
Found at i:44252 original size:24 final size:24
Alignment explanation
Indices: 44194--44258 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
44184 ACTACGGCTA
*
44194 ATAATTATTTTAATTTAAATAATTT
1 ATAATTA-TTTAATTTAAATAAATT
*
44219 ATAAAT-TTTAATTTTAAATAAATT
1 ATAATTATTTAA-TTTAAATAAATT
*
44243 A-AATTATTTAAATTAA
1 ATAATTATTTAATTTAA
44259 TTATTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 12 0.35
24 17 0.50
25 5 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
ATAATTATTTAATTTAAATAAATT
Found at i:46613 original size:10 final size:10
Alignment explanation
Indices: 46600--46626 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
46590 AAAATAAATA
46600 AAAAAGATAT
1 AAAAAGATAT
46610 AAAAAGATAT
1 AAAAAGATAT
46620 AAAAAGA
1 AAAAAGA
46627 AGAATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (10 bp):
AAAAAGATAT
Found at i:46731 original size:25 final size:25
Alignment explanation
Indices: 46703--46752 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
46693 AAATAAAAAC
46703 ATAAAAAAGTAAATATATATATATA
1 ATAAAAAAGTAAATATATATATATA
* *
46728 ATAAAAAATTATATATATATATATA
1 ATAAAAAAGTAAATATATATATATA
46753 TGTAATCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAAAAAAGTAAATATATATATATA
Found at i:46776 original size:29 final size:28
Alignment explanation
Indices: 46713--46792 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 28
46703 ATAAAAAAGT
*
46713 AAATATATATATATAATAAAAAATTATAT
1 AAATATATATATATAATAAAAAA-TATAA
* *
46742 ATATATATATATGTAATCTAAAAAA-ATAA
1 AAATATATATATATAA--TAAAAAATATAA
46771 AAATATATAT-TA-AAGTAAAAAA
1 AAATATATATATATAA-TAAAAAA
46793 GAAAATGCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
26 7 0.16
27 2 0.05
28 1 0.02
29 26 0.60
31 7 0.16
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (28 bp):
AAATATATATATATAATAAAAAATATAA
Found at i:47371 original size:37 final size:37
Alignment explanation
Indices: 47321--47391 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
47311 TTGTGGAACC
47321 TATTTTTAGGAGTTTGAATCATAG-TAAAACTCTATCA
1 TATTTTTAGGAGTTTGAATCAT-GCTAAAACTCTATCA
*
47358 TATTTTTAGGAGTTTGAATCCTGCTAAAACTCTA
1 TATTTTTAGGAGTTTGAATCATGCTAAAACTCTA
47392 ACGTTTGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 1 0.03
37 31 0.97
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (37 bp):
TATTTTTAGGAGTTTGAATCATGCTAAAACTCTATCA
Found at i:47802 original size:76 final size:76
Alignment explanation
Indices: 47631--47807 Score: 189
Period size: 76 Copynumber: 2.3 Consensus size: 76
47621 AATACAGAGG
* ** * *
47631 ATTTATCTCACTTGAGATTGTTTTTCTTAAAATAGAATTTGTCTCACTTGAGACAGTTTTTACTC
1 ATTTATTTCACTCAAGATTGTTTTTCTTAAAACAGAATTTGTCTCACTTGAGACAGTTTTCACTC
* *
47696 GAAACAGGAAG
66 GAAACAAGAAC
* **
47707 ATTTATTTCACTCAGGATTGTTTTTCTTAAAACA-ATATTTGTCTTGCTTGAGAC-GATTTTCAC
1 ATTTATTTCACTCAAGATTGTTTTTCTTAAAACAGA-ATTTGTCTCACTTGAGACAG-TTTTCAC
*
47770 TCGAAAGAAG-AC
64 TCGAAACAAGAAC
* *
47782 ATTTCATTTTAGTCAAGATTGTTTTT
1 ATTT-ATTTCACTCAAGATTGTTTTT
47808 AAAGAAGATT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
75 7 0.08
76 77 0.92
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (76 bp):
ATTTATTTCACTCAAGATTGTTTTTCTTAAAACAGAATTTGTCTCACTTGAGACAGTTTTCACTC
GAAACAAGAAC
Found at i:47893 original size:39 final size:39
Alignment explanation
Indices: 47810--48157 Score: 497
Period size: 39 Copynumber: 9.0 Consensus size: 39
47800 TTGTTTTTAA
*
47810 AGAAGATTTTATATCGCTTGAGATAGTTT-CCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
47848 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
47887 AAAAGATTTTATCTCGCTTGAGATAGTTTCCATCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
47926 AGAAGATTTTATCTTGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
47965 AGAAGATTTTATCTCGTTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
48004 AGAAGATTTTGTCTCGTTTGAGATAGTTTCTCTCAAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
48043 AGAAGATTTTGTCTCGCTTGAGATAGTTTCTCTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
48082 AGAAGATTTTGTCTCGCTTGAGACAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
48121 --AA-ATTTTGTCTCGCTTGAGATAGTTTCTCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
48157 A
1 A
48158 CAAAATCTTT
Statistics
Matches: 288, Mismatches: 20, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
36 32 0.11
37 2 0.01
38 27 0.09
39 227 0.79
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:48238 original size:30 final size:30
Alignment explanation
Indices: 48135--48256 Score: 102
Period size: 30 Copynumber: 3.8 Consensus size: 30
48125 TTTGTCTCGC
*
48135 TTGAGATAGTTTCTCTTGAAACACAAAATCT
1 TTGAGACAGTTTCTCTTGAAACA-AAAATCT
* **
48166 TTGA-ATATGTTTCTCTTGAAACAAATTTTGTCT
1 TTGAGACA-GTTTCTCTTGAAACAAA---AATCT
*
48199 CACTTGAGACAATTTCTCTTGAAACAAAAATCT
1 ---TTGAGACAGTTTCTCTTGAAACAAAAATCT
* *
48232 TTGAGACCGTTTCCCTTGAAACAAA
1 TTGAGACAGTTTCTCTTGAAACAAA
48257 TTTTTTTTCT
Statistics
Matches: 74, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
30 27 0.36
31 19 0.26
33 6 0.08
36 20 0.27
37 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (30 bp):
TTGAGACAGTTTCTCTTGAAACAAAAATCT
Found at i:48271 original size:66 final size:67
Alignment explanation
Indices: 48099--48360 Score: 285
Period size: 66 Copynumber: 3.9 Consensus size: 67
48089 TTTGTCTCGC
* *
48099 TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCGCTTGAGATAGTTTCTCTTGAAACACAAAAT
1 TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACACAAAAT
48164 CT
66 CT
* * *
48166 TTGA-ATATGTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAATTTCTCTTGAAACA-AAAA
1 TTGAGACA-GTTTCCCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACACAAAA
48229 TCT
65 TCT
* * * * * **
48232 TTGAGACCGTTTCCCTTGAAACAAATTTTTTTTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTT
1 TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAAC-A---CA
***
48297 GTCTCT
62 AAATCT
* * * *
48303 ATTGAGACAATTTCCCTTGAAACAAATTTTGACTCTCTTGAGACAGTTTCCCTTGAAA
1 -TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAA
48361 GAATAAATGT
Statistics
Matches: 165, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
66 57 0.35
67 53 0.32
71 3 0.02
72 52 0.32
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (67 bp):
TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACACAAAAT
CT
Found at i:49160 original size:44 final size:43
Alignment explanation
Indices: 49009--49303 Score: 180
Period size: 44 Copynumber: 6.7 Consensus size: 43
48999 CTTGTTCAAC
* * * * *
49009 TTTTTGCTCGATTCTATTACAAAAGGAGGTAGATTAGCACCGAC
1 TTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCA-CAAT
* * * * * * * * *
49053 ATCTCGATCGATTCCATCACAGAATGAGGTGGAT-TG-ACATTT
1 TTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACA-AT
* * * * * *
49095 TTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAGCGTCAAT
1 TT-TTT-GCTCGATTCTATCACAGAAGGAGGTAGATCAGC-ACAAT
* * * *
49141 TTTTTGCTCGATTTTATCACAGAACGAGGTAAATCAGCACCAAC
1 TTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCA-CAAT
* * * *
49185 ATTTTGCTCGATTCTATCACAGAAGGAGATAGATCAACACCAT
1 TTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACAAT
* * *
49228 TATTTTGCTCGATTCTATCACAGAAAGAGGTAGATCAGCATCGAC
1 T-TTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCA-CAAT
* * * * *
49273 GTCTCGTTCGATTCCATCACAGAAGGAGGTA
1 TTTTTGCTCGATTCTATCACAGAAGGAGGTA
49304 AATCGATCGA
Statistics
Matches: 188, Mismatches: 54, Indels: 18
0.72 0.21 0.07
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 4 0.02
44 170 0.90
45 6 0.03
46 3 0.02
47 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (43 bp):
TTTTTGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACAAT
Found at i:49204 original size:88 final size:88
Alignment explanation
Indices: 49100--49300 Score: 233
Period size: 88 Copynumber: 2.3 Consensus size: 88
49090 CATTTTTATT
* * * * * * *
49100 TCGCTCAAATCCATCACAGAAGGAGTTGGATCAGCGTCAATT-TTTTGCTCGATTTTATCACAGA
1 TCGCTCGATTCCATCACAGAAGGAGATAGATCAAC-ACAATTATTTTGCTCGATTCTATCACAGA
* *
49164 ACGAGGTAAATCAGCACCAACATT
65 AAGAGGTAAATCAGCACCAACATC
* * *
49188 TTGCTCGATTCTATCACAGAAGGAGATAGATCAACACCATTATTTTGCTCGATTCTATCACAGAA
1 TCGCTCGATTCCATCACAGAAGGAGATAGATCAACACAATTATTTTGCTCGATTCTATCACAGAA
* * * *
49253 AGAGGTAGATCAGCATCGACGTC
66 AGAGGTAAATCAGCACCAACATC
*
49276 TCGTTCGATTCCATCACAGAAGGAG
1 TCGCTCGATTCCATCACAGAAGGAG
49301 GTAAATCGAT
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
87 4 0.04
88 89 0.96
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (88 bp):
TCGCTCGATTCCATCACAGAAGGAGATAGATCAACACAATTATTTTGCTCGATTCTATCACAGAA
AGAGGTAAATCAGCACCAACATC
Found at i:49248 original size:132 final size:132
Alignment explanation
Indices: 49004--49606 Score: 488
Period size: 132 Copynumber: 4.7 Consensus size: 132
48994 AAGAACTTGT
* * * * * * * *
49004 TCAACTTTTTGCTCGATTCTATTACAAAAGGAGGTAGATTAGCACCGACATCTCGATCGATTCCA
1 TCAATTTTTTGCTCGATTCTATCACAGAAGGAGGTAAATCAGCACCAACATCTTGCTCGATTCCA
* * * *
49069 TCACAGAATGAGGTGGATTGACATTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAG
66 TCACAGAAAGAGGTAGATCGACACTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAG
*
49134 CG
131 CA
* * * *
49136 TCAATTTTTTGCTCGATTTTATCACAGAACGAGGTAAATCAGCACCAACATTTTGCTCGATTCTA
1 TCAATTTTTTGCTCGATTCTATCACAGAAGGAGGTAAATCAGCACCAACATCTTGCTCGATTCCA
* * * ** * * * * * * *
49201 TCACAGAAGGAGATAGATCAACACCATTATTTTGCTCGATTCTATCACAGAAAGAGGTAGATCAG
66 TCACAGAAAGAGGTAGATCGACACTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAG
49266 CA
131 CA
* ** * * * *
49268 TCGACGTCTCGTTCGATTCCATCACAGAAGGAGGTAAATC-G-------A------TCGATTCCA
1 TCAATTTTTTGCTCGATTCTATCACAGAAGGAGGTAAATCAGCACCAACATCTTGCTCGATTCCA
* * * * *
49319 TCACAGAAGGAGGTAAATCGACA-TTTTCATTACACTCAAATCCATCACAGAAGAAGTTGGATC-
66 TCACAGAAAGAGGTAGATCGACACTTTT-ATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCA
49382 GACA
130 G-CA
* * * * *
49386 TCAACTTTTTT-CTCGATTCTACCACAGAAGGAGGTAGATCAACA-CATACATCTTGTTCGATTG
1 TCAA-TTTTTTGCTCGATTCTATCACAGAAGGAGGTAAATCAGCACCA-ACATCTTGCTCGATTC
* * * * *
49449 CATCACAGAAAGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATCGCAGAAGGAATTGGACC
64 CATCACAGAAAGAGGTAGATCGACACTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATC
*
49514 AGCG
129 AGCA
* * * * * *
49518 TCAACTTTTTT-CTCGATTCTATCACAGAATGAGGAAAATCAACACCAACATTTTGCTTGATTCT
1 TCAA-TTTTTTGCTCGATTCTATCACAGAAGGAGGTAAATCAGCACCAACATCTTGCTCGATTCC
* *
49582 ATCACAAAAAGAGGTAGATCAACAC
65 ATCACAGAAAGAGGTAGATCGACAC
49607 CAACATTTTG
Statistics
Matches: 364, Mismatches: 87, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
117 3 0.01
118 83 0.23
119 2 0.01
124 1 0.00
126 1 0.00
131 1 0.00
132 266 0.73
133 7 0.02
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (132 bp):
TCAATTTTTTGCTCGATTCTATCACAGAAGGAGGTAAATCAGCACCAACATCTTGCTCGATTCCA
TCACAGAAAGAGGTAGATCGACACTTTTATTTCGCTCAAATCCATCACAGAAGGAGTTGGATCAG
CA
Found at i:49314 original size:30 final size:30
Alignment explanation
Indices: 49280--49339 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
49270 GACGTCTCGT
49280 TCGATTCCATCACAGAAGGAGGTAAATCGA
1 TCGATTCCATCACAGAAGGAGGTAAATCGA
49310 TCGATTCCATCACAGAAGGAGGTAAATCGA
1 TCGATTCCATCACAGAAGGAGGTAAATCGA
49340 CATTTTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (30 bp):
TCGATTCCATCACAGAAGGAGGTAAATCGA
Found at i:49536 original size:250 final size:250
Alignment explanation
Indices: 49056--49557 Score: 555
Period size: 250 Copynumber: 2.0 Consensus size: 250
49046 CACCGACATC
* ** * * * *
49056 TCGATCGATTCCATCACAGAATGAGGTGGATTGACATTTTTATTTCGCTCAAATCCATCACAGAA
1 TCGATCGATTCCATCACAGAAGGAGGTAAATCGACATTTTCATTACACTCAAATCCATCACAGAA
* * * * *
49121 GGAGTTGGATCAGCGTCAATTTTTTGCTCGATTTTATCACAGAACGAGGTAAATCAGCACCAACA
66 GAAGTTGGATCAGCATCAATTTTTTGCTCGATTCTACCACAGAACGAGGTAAATCAACACCAACA
* * * * * *
49186 TTTTGCTCGATTCTATCACAGAAGGAGATAGATCAACACCATTATTTTGCTCGATTCTATCACAG
131 TCTTGCTCGATTCTATCACAGAAAGAGATAGATCAACACCATTATTTCGCTCAAATCCATCACAG
* * * *
49251 AAAGAGGTAGATCAGCATCGACGTCTCGTTCGATTCCATCACAGAAGGAGGTAAA
196 AAAGAAGTAGACCAGCATCAACGTCTCGTTCGATTCCATCACAGAAGGAGGAAAA
49306 TCGATCGATTCCATCACAGAAGGAGGTAAATCGACATTTTCATTACACTCAAATCCATCACAGAA
1 TCGATCGATTCCATCACAGAAGGAGGTAAATCGACATTTTCATTACACTCAAATCCATCACAGAA
* *
49371 GAAGTTGGATC-GACATCAACTTTTTT-CTCGATTCTACCACAGAAGGAGGTAGATCAACA-CAT
66 GAAGTTGGATCAG-CATCAA-TTTTTTGCTCGATTCTACCACAGAACGAGGTAAATCAACACCA-
* * * * ***
49433 ACATCTTGTTCGATTGC-ATCACAGAAAGAGGTGGATCGACATTTTTATTTCGCTCAAATCCATC
128 ACATCTTGCTCGATT-CTATCACAGAAAGAGATAGATCAACACCATTATTTCGCTCAAATCCATC
* * * * * * ** * *
49497 GCAGAAGGAATTGGACCAGCGTCAAC-TTTTTTCTCGATTCTATCACAGAATGAGGAAAA
192 ACAGAAAGAAGTAGACCAGCATCAACGTCTCGT-TCGATTCCATCACAGAAGGAGGAAAA
49556 TC
1 TC
49558 AACACCAACA
Statistics
Matches: 206, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
249 6 0.03
250 193 0.94
251 7 0.03
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (250 bp):
TCGATCGATTCCATCACAGAAGGAGGTAAATCGACATTTTCATTACACTCAAATCCATCACAGAA
GAAGTTGGATCAGCATCAATTTTTTGCTCGATTCTACCACAGAACGAGGTAAATCAACACCAACA
TCTTGCTCGATTCTATCACAGAAAGAGATAGATCAACACCATTATTTCGCTCAAATCCATCACAG
AAAGAAGTAGACCAGCATCAACGTCTCGTTCGATTCCATCACAGAAGGAGGAAAA
Found at i:49580 original size:44 final size:44
Alignment explanation
Indices: 49519--49649 Score: 190
Period size: 44 Copynumber: 3.0 Consensus size: 44
49509 GGACCAGCGT
* * * *
49519 CAACTTTTTTCTCGATTCTATCACAGAATGAGGAAAATCAACAC
1 CAACATTTTGCTCGATTCTATCACAGAATGAGGTAGATCAACAC
* * *
49563 CAACATTTTGCTTGATTCTATCACAAAAAGAGGTAGATCAACAC
1 CAACATTTTGCTCGATTCTATCACAGAATGAGGTAGATCAACAC
*
49607 CAACATTTTGCTCGATTCTATCATAGAATGAGGTAGATCAACA
1 CAACATTTTGCTCGATTCTATCACAGAATGAGGTAGATCAACA
49650 TCGATATCTC
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 76 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.29
Consensus pattern (44 bp):
CAACATTTTGCTCGATTCTATCACAGAATGAGGTAGATCAACAC
Found at i:49666 original size:44 final size:44
Alignment explanation
Indices: 49530--49678 Score: 174
Period size: 44 Copynumber: 3.4 Consensus size: 44
49520 AACTTTTTTC
* *
49530 TCGATTCTATCACAGAATGAGGAAAATCAACACCAACATTTTGCT
1 TCGATTCTATCACAGAATGAGGTAGATCAACACCAACATTTTG-T
* * *
49575 T-GATTCTATCACAAAAAGAGGTAGATCAACACCAACATTTTGC
1 TCGATTCTATCACAGAATGAGGTAGATCAACACCAACATTTTGT
* * * * * *
49618 TCGATTCTATCATAGAATGAGGTAGATCAACATCGATATCTCGT
1 TCGATTCTATCACAGAATGAGGTAGATCAACACCAACATTTTGT
*
49662 TCGATTCCATCACAGAA
1 TCGATTCTATCACAGAA
49679 GGAAGTGGAT
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
43 1 0.01
44 85 0.98
45 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (44 bp):
TCGATTCTATCACAGAATGAGGTAGATCAACACCAACATTTTGT
Found at i:51054 original size:16 final size:15
Alignment explanation
Indices: 51035--51085 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
51025 ATTTTTAATT
51035 TTTTAATTATCTTTTG
1 TTTTAATTATC-TTTG
*
51051 TTTTAATTAGTAGTTTG
1 TTTTAATTA-T-CTTTG
51068 TTTTTAATT-TCTTTG
1 -TTTTAATTATCTTTG
51083 TTT
1 TTT
51086 CATAGTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 3 0.10
15 4 0.13
16 10 0.33
17 5 0.17
18 8 0.27
ACGTcount: A:0.18, C:0.04, G:0.10, T:0.69
Consensus pattern (15 bp):
TTTTAATTATCTTTG
Found at i:51072 original size:18 final size:17
Alignment explanation
Indices: 51034--51076 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
51024 TATTTTTAAT
**
51034 TTTTTAATTATCTTTTG
1 TTTTTAATTATAGTTTG
51051 -TTTTAATTAGTAGTTTG
1 TTTTTAATTA-TAGTTTG
51068 TTTTTAATT
1 TTTTTAATT
51077 TCTTTGTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 5 0.23
18 8 0.36
ACGTcount: A:0.21, C:0.02, G:0.09, T:0.67
Consensus pattern (17 bp):
TTTTTAATTATAGTTTG
Found at i:52956 original size:69 final size:69
Alignment explanation
Indices: 52845--52978 Score: 241
Period size: 69 Copynumber: 1.9 Consensus size: 69
52835 ACGTAAAATG
*
52845 TTGGTGTCTATTTTATTGTATGATCACTATACTTGTCATTATCTTCTAACAAATTAGTATAAGAG
1 TTGGTGTCTATTTTATTGTATGATCACTATACTTGTCATTATCTTCTAACAAATTAATATAAGAG
52910 CATT
66 CATT
**
52914 TTGGTGTCTATTTTATTGTATGATCACTATGTTTGTCATTATCTTCTAACAAATTAATATAAGAG
1 TTGGTGTCTATTTTATTGTATGATCACTATACTTGTCATTATCTTCTAACAAATTAATATAAGAG
52979 TGTTCAGATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (69 bp):
TTGGTGTCTATTTTATTGTATGATCACTATACTTGTCATTATCTTCTAACAAATTAATATAAGAG
CATT
Found at i:54412 original size:23 final size:23
Alignment explanation
Indices: 54365--54414 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
54355 AATAACATAT
**
54365 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
54388 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
54411 TAGG
1 TAGG
54415 CATTTAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:54474 original size:87 final size:87
Alignment explanation
Indices: 54328--54490 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
54318 AATGTTATAT
*
54328 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
*
54393 AGCGCTTATATAATAAAATAGG
66 AGAGCTTATATAATAAAATAGG
* *
54415 CATTTAACTGAAAATATTATCAAGTACAATAACATATTAGGTAGCTCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
54480 AGAGCTTATAT
66 AGAGCTTATAT
54491 TGACCTATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGAGCTTATATAATAAAATAGG
Found at i:54937 original size:200 final size:196
Alignment explanation
Indices: 54485--55212 Score: 788
Period size: 200 Copynumber: 3.6 Consensus size: 196
54475 TAGGTAGAGC
* ** *
54485 TTATATTGACCTATTTTCGAAGT-AAACCGGTATATTTATACCGGTAACATTGTAAATTTACCTA
1 TTATGTTGACCTATTTTCTCA-TAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTA
* * ** *
54549 TTACATTATTATTATCGGTTACGATGTTTTTTAGATCGATACAATTT-TAAATGTATCGACACTT
65 TTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTATAAATGTATCGACACTT
* ** * * * * *
54613 TATGCTTGCACCTAGTTGGGCATTCATATTTCATTCTGGAAAAAAGTATTGACATAAACTA-ACG
129 TATGGTTGCACCTA-TT-----TTGGTATTT-ATTCTGGACAAAAGTATCGACACAAATTACAAG
54677 TGTCGATACA
187 TGTCGATACA
* * * *
54687 TTAT-TTAGACCTATTCTCTCATAAAGCCGGTATATTTATACCGATTACATTGAAAATTTACCTA
1 TTATGTT-GACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTA
* * *
54751 TTACATTATACTTATGGGTTTCGATGTTTCTGGGATCGATACGTTTTATAAATGTATCGACACTT
65 TTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTATAAATGTATCGACACTT
*
54816 TATGGTTGCACCCT-TTTTGGTATTTATTCTGGACCAAAAGCATCGACACAAATTTATCAAGTGT
129 TATGGTTGCA-CCTATTTTGGTATTTATTCTGGA-CAAAAGTATCGACACAAA-TTA-CAAGTGT
*
54880 CGATACT
190 CGATACA
* * * *
54887 TTATGCTGACCTATTTTATCATAAAACCGGTATATTTATATCGGTTACATTGTAAATTTACCTAA
1 TTATGTTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTAT
* *
54952 TACATTATAATTATCGATTTCGATGTTTTTGGGATCGATACTTTTAATCAATGTATCGACACTTT
66 TACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTT-ATAAATGTATCGACACTTT
** * * *
55017 ATGCG-TGCACCTCGTTTGTGCATTCATCCTGGACAATAAGTATCGACACAAATTACACAAGTGT
130 ATG-GTTGCACCTATTTTG-GTATTTATTCTGGACAA-AAGTATCGACACAAATT--ACAAGTGT
55081 CGATACA
190 CGATACA
* * * * *
55088 TTATGTTGACCTGTTTTCTAAT-TAACCGGTATATTTATACCAGTTACATTGTTAATTTACCTAT
1 TTATGTTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTAT
* * * *
55152 TACATTATAATTATTGGTTTTGATTTTTTTGGG-TCGATACTTGTATAAAATGTATCGACAC
66 TACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAT-AAATGTATCGACAC
55213 ATATTTAGGT
Statistics
Matches: 449, Mismatches: 60, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
196 8 0.02
197 21 0.05
198 4 0.01
199 30 0.07
200 203 0.45
201 61 0.14
202 93 0.21
203 26 0.06
204 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (196 bp):
TTATGTTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTAT
TACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTATAAATGTATCGACACTTTA
TGGTTGCACCTATTTTGGTATTTATTCTGGACAAAAGTATCGACACAAATTACAAGTGTCGATAC
A
Found at i:58215 original size:251 final size:250
Alignment explanation
Indices: 57847--58337 Score: 718
Period size: 251 Copynumber: 2.0 Consensus size: 250
57837 GTTTCGATGT
* * *
57847 TTTTGGGATCGACACTTTTTGAAAATGTATCGACACTTTATTCGTTCACCCTTTTTGGCATCCAT
1 TTTTGGGATCGACACTTTATGAAAATGTATAGACACTTTATACGTTCACCCTTTTTGGCATCCAT
* * * *
57912 TATGGACAAAAATTATCGACACAATATTAATAAGTGTCGATACATATTATAGACCTATTCTCTCA
66 TATGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATATTATAGACATATT-TCTCA
* *
57977 TAAAACCGGTATATGTATACCGGTTATATT-ACAAAATTACCTATTACATTATAATTATGGGTTT
130 TAAAACCGGTAT-TGTATACCGGGTATATTGA-AAAATTACCCATTACATTATAATTATGGGTTT
* *
58041 CGATG-TTTTTGGGATCGACACTTTTAATAAATGTATCGACACTTTATGCGTGCAACCC
193 CGATGTTTTTTGGG-TCGACACTTTTAATAAATGAATCAACACTTTATGCGTGCAACCC
* * * *
58099 TTTT-GGATCGACACTTTATGGAAATGTATAGACACTTTGTAGGTTCCCCCTTTTTGGCATCCAT
1 TTTTGGGATCGACACTTTATGAAAATGTATAGACACTTTATACGTTCACCCTTTTTGGCATCCAT
* * *
58163 TCTGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATGTTATAGACATATTTTTCAT
66 TATGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATATTATAGACATATTTCTCAT
*
58228 AAAACCGGTATTTTATACCGGGTATATTGAAAAATTACCCATTACATTATAATTATGGGTTTCGA
131 AAAACCGGTATTGTATACCGGGTATATTGAAAAATTACCCATTACATTATAATTATGGGTTTCGA
** * *
58293 TGTTTTTTGGGTCGTTACTTTTTATATATGAATCAACACTTTATG
196 TGTTTTTTGGGTCGACACTTTTAATAAATGAATCAACACTTTATG
58338 GGAAACTTTA
Statistics
Matches: 214, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
249 79 0.37
250 25 0.12
251 106 0.50
252 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (250 bp):
TTTTGGGATCGACACTTTATGAAAATGTATAGACACTTTATACGTTCACCCTTTTTGGCATCCAT
TATGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATATTATAGACATATTTCTCAT
AAAACCGGTATTGTATACCGGGTATATTGAAAAATTACCCATTACATTATAATTATGGGTTTCGA
TGTTTTTTGGGTCGACACTTTTAATAAATGAATCAACACTTTATGCGTGCAACCC
Found at i:61822 original size:201 final size:201
Alignment explanation
Indices: 61090--61808 Score: 1161
Period size: 201 Copynumber: 3.6 Consensus size: 201
61080 TATTTAAATT
* * * *
61090 AGTATCGACACAAAATTAAAAACGTGTCGATACATATTGTAGATATATTCTCTCATAAAATCGAT
1 AGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCATAAAATCGGT
* *
61155 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTTGATGTTTTTG
66 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTG
*
61220 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGG
131 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGTGTTCACCCTTTTTGGCATCCATTCTGG
61285 ACCAAA
196 ACCAAA
*
61291 AGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGATATATTCTCTCATAAAATCGGT
1 AGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCATAAAATCGGT
* *
61356 ATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTG
66 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTG
* * * *
61421 GGATCAACACATTTTAAAAATGTATCGACACTTTATGTGTTCACCCTTCTTTGTCATCCATTCTG
131 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGTGTTCACCCTT-TTTGGCATCCATTCTG
61486 GACCAAA
195 GACCAAA
* *
61493 AGTATCGACAAAAAATTAAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAATCGGT
1 AGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCATAAAATCGGT
* * *
61558 ATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAATTATGGGTTTCGATGTTTCTA
66 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTG
* * *
61623 GGATCGATACTTTTTGAAAATGTATCGATACTTTATGTGTTCACCCTTTTTGGCATCCATTTTGG
131 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGTGTTCACCCTTTTTGGCATCCATTCTGG
61688 ACCAAA
196 ACCAAA
* * * *
61694 AGTATCGACATAAAATTTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAA-CTGG
1 AGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCATAAAATC-GG
* *
61758 TATATTTATACCAGTTACATTGAAAATTTACCTATTACATTATACTTATGG
65 TATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGG
61809 ATGCATATGT
Statistics
Matches: 484, Mismatches: 32, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
200 1 0.00
201 294 0.61
202 189 0.39
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.38
Consensus pattern (201 bp):
AGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCATAAAATCGGT
ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTG
GGATCGACACTTTTTGAAAATGTATCGACACTTTATGTGTTCACCCTTTTTGGCATCCATTCTGG
ACCAAA
Found at i:61908 original size:403 final size:400
Alignment explanation
Indices: 61090--61827 Score: 1129
Period size: 403 Copynumber: 1.8 Consensus size: 400
61080 TATTTAAATT
* * *
61090 AGTATCGACACAAAATTAAAAACGTGTCGATACATATTGTAGATATATTCTCTCATAAAATCGAT
1 AGTATCGACAAAAAATTAAAAAAGTGTCGATACATATTGTAGACATATTCTCTCATAAAATCGAT
* * *
61155 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTTGATGTTTTTG
66 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTA
61220 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGG
131 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGG
* *
61285 ACCAAAAGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTGTAGATATATTCTCTCATAAA
196 ACCAAAAGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTATAGACATATTCTCTCATAAA
** * * *
61350 ATCGGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATG
261 ATCGGTATATTTATACCAGTTACATTGAAAATTTACCTATTACATTATAATTATGGGATGCGATG
* * ** *
61415 TTTCTGGGATCAACACATTTTAAAAATGTATCGACACTTTATGTGTTCACCCTTCTTTGTCATCC
326 TTTCTGGGATCAACAAATTTTAAAAATGTATCGACACTATATGTGTTCA--CTTCTTTGAAATCA
61480 ATTCTGGACCAAA
389 ATTCTGGA-CAAA
* * *
61493 AGTATCGACAAAAAATTAAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAATCGGT
1 AGTATCGACAAAAAATTAAAAAAGTGTCGATACATATTGTAGACATATTCTCTCATAAAATCGAT
* *
61558 ATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAATTATGGGTTTCGATGTTTCTA
66 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTA
* * * *
61623 GGATCGATACTTTTTGAAAATGTATCGATACTTTATGTGTTCACCCTTTTTGGCATCCATTTTGG
131 GGATCGACACTTTTTGAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGG
* * *
61688 ACCAAAAGTATCGACATAAAATTTAAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAA
196 ACCAAAAGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTATAGACATATTCTCTCATAAA
* *
61753 A-CTGGTATATTTATACCAGTTACATTGAAAATTTACCTATTACATTATACTTAT-GGATGCATA
261 ATC-GGTATATTTATACCAGTTACATTGAAAATTTACCTATTACATTATAATTATGGGATGC-GA
61816 TGTTTCTGGGAT
324 TGTTTCTGGGAT
61828 TGATAAATTT
Statistics
Matches: 306, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
402 5 0.02
403 301 0.98
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (400 bp):
AGTATCGACAAAAAATTAAAAAAGTGTCGATACATATTGTAGACATATTCTCTCATAAAATCGAT
ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTCTA
GGATCGACACTTTTTGAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGG
ACCAAAAGTATCGACACAAAATTAAAAAAGTGTCGATACATGTTATAGACATATTCTCTCATAAA
ATCGGTATATTTATACCAGTTACATTGAAAATTTACCTATTACATTATAATTATGGGATGCGATG
TTTCTGGGATCAACAAATTTTAAAAATGTATCGACACTATATGTGTTCACTTCTTTGAAATCAAT
TCTGGACAAA
Found at i:63999 original size:19 final size:19
Alignment explanation
Indices: 63975--64016 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
63965 CCCCTTATGC
63975 CTCTCAAGTATATCTTCGA
1 CTCTCAAGTATATCTTCGA
* *
63994 CTCTCAAGTTTCTCTTCGA
1 CTCTCAAGTATATCTTCGA
64013 CTCT
1 CTCT
64017 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.19, C:0.31, G:0.10, T:0.40
Consensus pattern (19 bp):
CTCTCAAGTATATCTTCGA
Found at i:64119 original size:15 final size:15
Alignment explanation
Indices: 64099--64131 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
64089 ACTCTGTTTT
64099 CCCTCACCGTCATCC
1 CCCTCACCGTCATCC
64114 CCCTCACCGTCATCC
1 CCCTCACCGTCATCC
64129 CCC
1 CCC
64132 AATACAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.64, G:0.06, T:0.18
Consensus pattern (15 bp):
CCCTCACCGTCATCC
Found at i:65784 original size:58 final size:58
Alignment explanation
Indices: 65713--65850 Score: 240
Period size: 58 Copynumber: 2.4 Consensus size: 58
65703 TACAACCTAT
* *
65713 AATATCATTTTCTACCTATAATATTTAATAAAAGTATCAACATTTATATTTTACCTTG
1 AATATCACTTTCTACCTGTAATATTTAATAAAAGTATCAACATTTATATTTTACCTTG
* *
65771 AATATTACTTTCTACCTGTAATATTTAATAAAAGTATCGACATTTATATTTTACCTTG
1 AATATCACTTTCTACCTGTAATATTTAATAAAAGTATCAACATTTATATTTTACCTTG
65829 AATATCACTTTCTACCTGTAAT
1 AATATCACTTTCTACCTGTAAT
65851 CGGTCCCAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 75 1.00
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (58 bp):
AATATCACTTTCTACCTGTAATATTTAATAAAAGTATCAACATTTATATTTTACCTTG
Found at i:66306 original size:20 final size:19
Alignment explanation
Indices: 66261--66306 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
66251 CCGGTAGCGC
*
66261 TTTACCGGTTTTATCATTT
1 TTTACCGATTTTATCATTT
*
66280 TGATACCGATTTTATCATATT
1 T-TTACCGATTTTATCAT-TT
66301 TTTACC
1 TTTACC
66307 TATTATATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 18 0.82
21 3 0.14
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (19 bp):
TTTACCGATTTTATCATTT
Found at i:71088 original size:18 final size:18
Alignment explanation
Indices: 71065--71109 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
71055 TATAGAACAC
71065 GATGAGTATGTTATGTTT
1 GATGAGTATGTTATGTTT
71083 GATGAGTATGTTATGTTT
1 GATGAGTATGTTATGTTT
71101 GATGAGTAT
1 GATGAGTAT
71110 TGATGAGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (18 bp):
GATGAGTATGTTATGTTT
Found at i:71828 original size:17 final size:18
Alignment explanation
Indices: 71801--71846 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
71791 TTTATATATC
71801 TTAACTTAATTTCACATA
1 TTAACTTAATTTCACATA
* *
71819 TTAA-TTAATTTTACATC
1 TTAACTTAATTTCACATA
71836 TTAACATTAAT
1 TTAAC-TTAAT
71847 AATATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 15 0.62
18 4 0.17
19 5 0.21
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (18 bp):
TTAACTTAATTTCACATA
Found at i:71914 original size:59 final size:58
Alignment explanation
Indices: 71847--71958 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 58
71837 TAACATTAAT
* *
71847 AATATATTTTATTTTTATATTAACTTATTAAA-TATAGTCTATTCTTGTCTTAACCTAAA
1 AATATATTTTATTCTTATATTAACTTA--AAATTATAGTCTATTCTTCTCTTAACCTAAA
* * *
71906 AATATATTTTATTCTTATTTTAACTTAAAATTATATTTTATTCTTCTCTTAAC
1 AATATATTTTATTCTTATATTAACTTAAAATTATAGTCTATTCTTCTCTTAAC
71959 TTATTACATA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
57 3 0.06
58 19 0.40
59 25 0.53
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.54
Consensus pattern (58 bp):
AATATATTTTATTCTTATATTAACTTAAAATTATAGTCTATTCTTCTCTTAACCTAAA
Found at i:71918 original size:29 final size:29
Alignment explanation
Indices: 71833--71961 Score: 141
Period size: 29 Copynumber: 4.4 Consensus size: 29
71823 TTAATTTTAC
* *
71833 ATCTTAACATTAATAATATATTTTATTTTT
1 ATCTTAAC-TTAAAAATATATTTTATTCTT
* * * *
71863 ATATTAACTTATTAAATATAGTCTATTCTT
1 ATCTTAACTTA-AAAATATATTTTATTCTT
* *
71893 GTCTTAACCTAAAAATATATTTTATTCTT
1 ATCTTAACTTAAAAATATATTTTATTCTT
* *
71922 ATTTTAACTTAAAATTATATTTTATTCTT
1 ATCTTAACTTAAAAATATATTTTATTCTT
*
71951 CTCTTAACTTA
1 ATCTTAACTTA
71962 TTACATAAAT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
29 52 0.65
30 28 0.35
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.53
Consensus pattern (29 bp):
ATCTTAACTTAAAAATATATTTTATTCTT
Found at i:72062 original size:30 final size:30
Alignment explanation
Indices: 72026--72084 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
72016 AATTTTTTAA
72026 CTTAAATTATTAAATAT-ATTATATTCTTAC
1 CTTAAATTATTAAATATAATTA-ATTCTTAC
72056 CTTAAATTATTAAATATAATTAATTCTTA
1 CTTAAATTATTAAATATAATTAATTCTTA
72085 TTTTAAGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.49
Consensus pattern (30 bp):
CTTAAATTATTAAATATAATTAATTCTTAC
Found at i:72128 original size:24 final size:24
Alignment explanation
Indices: 72101--72157 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
72091 GCATATCTTT
* *
72101 TATTCTTATCTTATCT-TAAAAATA
1 TATT-TTATCTTAACTACAAAAATA
*
72125 TATTTTTATTTTAACTACAAAAATA
1 TA-TTTTATCTTAACTACAAAAATA
72150 TATTTTAT
1 TATTTTAT
72158 TTTTAATCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 17 0.61
25 11 0.39
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.53
Consensus pattern (24 bp):
TATTTTATCTTAACTACAAAAATA
Found at i:72242 original size:30 final size:30
Alignment explanation
Indices: 72186--72305 Score: 125
Period size: 30 Copynumber: 4.0 Consensus size: 30
72176 AATATTATTC
* * *
72186 GAATAAAATATAAATATTTAAGTTAAGATAA
1 GAATAAAATAT-ATTTTTTAATTTAAGATAA
* *
72217 GAATACATTATATTTTTTAATTTAAGATAA
1 GAATAAAATATATTTTTTAATTTAAGATAA
* * *
72247 GATTAAAATATA-TTTTTAAATTAAAATAA
1 GAATAAAATATATTTTTTAATTTAAGATAA
* **
72276 GAGTAAAATATATTTAATAATTTAAGATAA
1 GAATAAAATATATTTTTTAATTTAAGATAA
72306 AAAATATTTT
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
29 26 0.36
30 38 0.52
31 9 0.12
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (30 bp):
GAATAAAATATATTTTTTAATTTAAGATAA
Found at i:74377 original size:22 final size:20
Alignment explanation
Indices: 74342--74386 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
74332 GATTTCTTTT
74342 TAAAAAAATATATTTATCTA
1 TAAAAAAATATATTTATCTA
*
74362 TAAAAATATATATATTTATTTA
1 TAAAAA-A-ATATATTTATCTA
74384 TAA
1 TAA
74387 GTATACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 1 0.05
22 15 0.68
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAAAAAATATATTTATCTA
Found at i:86229 original size:29 final size:29
Alignment explanation
Indices: 86194--86275 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
86184 AAACTAAATT
*
86194 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
86223 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
86252 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
86276 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:90998 original size:29 final size:29
Alignment explanation
Indices: 90963--91044 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
90953 AAACTAAATT
*
90963 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
90992 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
91021 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
91045 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:94281 original size:241 final size:241
Alignment explanation
Indices: 93858--94337 Score: 809
Period size: 241 Copynumber: 2.0 Consensus size: 241
93848 TAATAGAAGT
* * *
93858 CATACAAGAAGATTGCCTAGAGATTTCAATCGAAGGTAAATAATGAAACATGATAGTGGAGTCAA
1 CATACAAGAAGATTGCCTAGAGATTTAAATCGAAGGTAAAGAATGAAACATGATAGTGGAGACAA
* * * *
93923 AAAAAATAAAGGTCTTTGGAGTGTTTACCAATTCCTTTCATCTTTCCAGTGAAAAGATCCTACAG
66 AAAAAATAAAGGCCTTTGGAGTGTTTACCAATTCCTTTCATCTTGCAAGTGAAAAGATACTACAG
*
93988 AAGGTAAAATCAGGATAAAAAAAGATAACACAATTTAAATCTTTTGTTAACTGAGAGACAGAGAG
131 AAGGAAAAATCAGGATAAAAAAAGATAACACAATTTAAATCTTTTGTTAACTGAGAGACAGAGAG
*
94053 AAGGTTCTGACTAAAACTAGGTACATACAGTACATCTTTTAGGAGC
196 AAGGTTCTGACTAAAACTAGGTACATACAATACATCTTTTAGGAGC
*
94099 CATACAAGAAGATTGCTTAGAGATTTAAATCGAAGGTAAAGAATGAAACATGATAGTGGAGAC-A
1 CATACAAGAAGATTGCCTAGAGATTTAAATCGAAGGTAAAGAATGAAACATGATAGTGGAGACAA
* *
94163 AAGAAATAAAGGCCTTTGGAGTGTTTGCCAATTCCTTTCATCTTGCAAGTGAAAAGATACTACAG
66 AAAAAATAAAGGCCTTTGGAGTGTTTACCAATTCCTTTCATCTTGCAAGTGAAAAGATACTACAG
* *
94228 AAGGAAAAACTCAGGATAAAAAATGATAACACAGTTTAAATCTTTTGTTAACTGAGAGACAGAGA
131 AAGGAAAAA-TCAGGATAAAAAAAGATAACACAATTTAAATCTTTTGTTAACTGAGAGACAGAGA
*
94293 GAAGGTTCTGACTAAAACTAGGTACATATAATACATCTTTTAGGA
195 GAAGGTTCTGACTAAAACTAGGTACATACAATACATCTTTTAGGA
94338 AAATATCATT
Statistics
Matches: 223, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
240 68 0.30
241 155 0.70
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.26
Consensus pattern (241 bp):
CATACAAGAAGATTGCCTAGAGATTTAAATCGAAGGTAAAGAATGAAACATGATAGTGGAGACAA
AAAAAATAAAGGCCTTTGGAGTGTTTACCAATTCCTTTCATCTTGCAAGTGAAAAGATACTACAG
AAGGAAAAATCAGGATAAAAAAAGATAACACAATTTAAATCTTTTGTTAACTGAGAGACAGAGAG
AAGGTTCTGACTAAAACTAGGTACATACAATACATCTTTTAGGAGC
Found at i:95334 original size:31 final size:33
Alignment explanation
Indices: 95279--95344 Score: 100
Period size: 31 Copynumber: 2.1 Consensus size: 33
95269 GTTTGGCAAG
* *
95279 TTGGAAATTTTATCTTGGTTGGTGGCCAACTTA
1 TTGGAAATATTATCTTGGTAGGTGGCCAACTTA
95312 TTGGAAA-ATTAT-TTGGTAGGTGGCCAACTTA
1 TTGGAAATATTATCTTGGTAGGTGGCCAACTTA
95343 TT
1 TT
95345 TTTCATCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 20 0.65
32 4 0.13
33 7 0.23
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.41
Consensus pattern (33 bp):
TTGGAAATATTATCTTGGTAGGTGGCCAACTTA
Found at i:97850 original size:23 final size:23
Alignment explanation
Indices: 97824--97892 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
97814 CACCACAGCT
*
97824 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* * *
97847 CGTAGAATTACACCGGAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCA
*
97870 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
97893 TATAATAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:98862 original size:20 final size:20
Alignment explanation
Indices: 98837--98881 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
98827 CTCTTTATAA
98837 ACATCTATATCTATTTCCCT
1 ACATCTATATCTATTTCCCT
* *
98857 ACATCTATTTTTATTTCCCT
1 ACATCTATATCTATTTCCCT
98877 ACATC
1 ACATC
98882 ACTCGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (20 bp):
ACATCTATATCTATTTCCCT
Found at i:102610 original size:23 final size:23
Alignment explanation
Indices: 102584--102652 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
102574 CACCATAGCT
*
102584 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* * *
102607 CGTAGAATTGCACCGGAGTACCG
1 CGTAGAATTGCACCGAAGTGCCA
*
102630 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
102653 TATAATAATG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:103615 original size:20 final size:20
Alignment explanation
Indices: 103592--103637 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
103582 CTCTTTATAA
103592 ACATCTATTTCTATTTCCCT
1 ACATCTATTTCTATTTCCCT
103612 ACATCTATTTCTATTTCCCT
1 ACATCTATTTCTATTTCCCT
103632 ACATCT
1 ACATCT
103638 CTCGACTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.30, G:0.00, T:0.48
Consensus pattern (20 bp):
ACATCTATTTCTATTTCCCT
Found at i:107789 original size:33 final size:33
Alignment explanation
Indices: 107752--107819 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
107742 GTTTGGCAAG
* * *
107752 TTGGAAATTTCATCTTGGTTTGTGGCCAACTTA
1 TTGGAAAATTCATATTGGTTGGTGGCCAACTTA
107785 TTGGAAAATTCATATTGGTTGGTGGCCAACTTA
1 TTGGAAAATTCATATTGGTTGGTGGCCAACTTA
107818 TT
1 TT
107820 TTTCATCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (33 bp):
TTGGAAAATTCATATTGGTTGGTGGCCAACTTA
Found at i:111937 original size:11 final size:11
Alignment explanation
Indices: 111921--111945 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
111911 TTGTTAGAAA
111921 ATTAATATATT
1 ATTAATATATT
111932 ATTAATATATT
1 ATTAATATATT
111943 ATT
1 ATT
111946 TTTTATTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTAATATATT
Found at i:111967 original size:44 final size:43
Alignment explanation
Indices: 111872--111974 Score: 107
Period size: 44 Copynumber: 2.4 Consensus size: 43
111862 TTTTTTGGTG
* * * *
111872 TAGTAAAATAATAATTAGTAATTTAATATATTTAATTATTTGT
1 TAGTAAATTAATAATTAGTAATATAATATATTTAATTATCTAT
* * * * *
111915 TAGAAAATTAATATATTATTAATATATTATTTTTTATTATCTAT
1 TAGTAAATTAATA-ATTAGTAATATAATATATTTAATTATCTAT
*
111959 TAGTAAATTAGTAATT
1 TAGTAAATTAATAATT
111975 TTTGAATAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
43 14 0.29
44 34 0.71
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (43 bp):
TAGTAAATTAATAATTAGTAATATAATATATTTAATTATCTAT
Found at i:115659 original size:20 final size:21
Alignment explanation
Indices: 115617--115663 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
115607 TCCTACAAAA
115617 AATAA-AATAAAGAAATTATT
1 AATAATAATAAAGAAATTATT
*
115637 AATAATAATAAATAAATTA-T
1 AATAATAATAAAGAAATTATT
115657 AATAATA
1 AATAATA
115664 GAAATATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (21 bp):
AATAATAATAAAGAAATTATT
Found at i:116045 original size:84 final size:84
Alignment explanation
Indices: 115892--116371 Score: 424
Period size: 84 Copynumber: 5.7 Consensus size: 84
115882 CTGAATGGAA
* * * * * * * * *
115892 TCGAACTCGTCAGGTCTTTGGTTGACAAATAGCCCTTCTTGCCTT-GAGCTATACTGCAAATGAT
1 TCGAACTCG-AAGGTCTTTGGTTGGCAGATAACCCTTCTAG-ATTCAAGTTATGCTGCAAATGAT
* *
115956 GTGCCTTGGAGTTAAGCGTAG
64 GTGCCTTGGAGCTGAGCGTAG
* * * *
115977 TCGAACTCCAAGGTCTTTGGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGATTCAAGTTATGCTGCAAATGATGT
116042 GCCTTGGAGCTGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* ** * * * *
116061 TCGAACTCGAAGATGT-TTTTG-TCACATATAACCCTTCTAGCCTT-GAGTTATGCTGTAAATGA
1 TCGAACTCGAAG--GTCTTTGGTTGGCAGATAACCCTTCTAG-ATTCAAGTTATGCTGCAAATGA
* * * *
116123 TGTGCTCTCGAAGCTGAGTGTAA
63 TGTGC-CTTGGAGCTGAGCGTAG
** * * * * *
116146 TCGAACTCGGGGGTC--T--TTGGCAGATAGCCCTTCTCGA-CCTAAGCTATACTGCAAATGATG
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGATTC-AAGTTATGCTGCAAATGATG
116206 TGCCGTT-GAGCTGAGCGTAG
65 TGCC-TTGGAGCTGAGCGTAG
* * * * * *
116226 TCAAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGATTCAAGTTATGCTGCAAATGATGT
116291 GCCTTGGAGCTGAGCGTAG
66 GCCTTGGAGCTGAGCGTAG
* * *
116310 TCGAACTCGAAGGTCTTTGGTTGGCAAATAACCCTTCTCGACTT-AAGTTATGTTGCAAATGA
1 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGA-TTCAAGTTATGCTGCAAATGA
116372 ACACGATATC
Statistics
Matches: 311, Mismatches: 67, Indels: 35
0.75 0.16 0.08
Matches are distributed among these distances:
80 22 0.07
81 34 0.11
82 2 0.01
83 6 0.02
84 205 0.66
85 40 0.13
86 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (84 bp):
TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGATTCAAGTTATGCTGCAAATGATGT
GCCTTGGAGCTGAGCGTAG
Found at i:116261 original size:165 final size:164
Alignment explanation
Indices: 116029--116329 Score: 367
Period size: 165 Copynumber: 1.8 Consensus size: 164
116019 TCAAGTTGTG
* * * *
116029 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGATGTTTTTGTCACATATAACC
1 CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGAGGTTTTTGTCACAGACAACC
* * * * * **
116094 CTTCTAGCCTT-GAGTTATGCTGTAAATGATGTGCTCTCGAAGCTGAGTGTAATCGAACTCGGGG
66 CTTCTAG-ATTCAAGTTATGCTGCAAATGATATGC-CTCGAAGCTGAGCGTAATCGAACTCGAAG
116158 GTCTTTGGCAGATAGCCCTTCTCGACCTAAGCTATA
129 GTCTTTGGCAGATAGCCCTTCTCGACCTAAGCTATA
* **
116194 CTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCAAACTC-AA-AGGTCTTTTGTTGGCAGACA
1 CTGCAAATGATATGCC-TTGGAGCTGAGCGTAGTCAAACTCGAAGAGGT-TTTTG-TCACAGACA
* * * *
116256 ACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAA
63 ACCCTTCTAGATTCAAGTTATGCTGCAAATGATATGCCTCGAAGCTGAGCGTAATCGAACTCGAA
116321 GGTCTTTGG
128 GGTCTTTGG
116330 TTGGCAAATA
Statistics
Matches: 114, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
163 3 0.03
164 40 0.35
165 69 0.61
166 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (164 bp):
CTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGAGGTTTTTGTCACAGACAACC
CTTCTAGATTCAAGTTATGCTGCAAATGATATGCCTCGAAGCTGAGCGTAATCGAACTCGAAGGT
CTTTGGCAGATAGCCCTTCTCGACCTAAGCTATA
Found at i:116361 original size:249 final size:249
Alignment explanation
Indices: 115920--116371 Score: 705
Period size: 249 Copynumber: 1.8 Consensus size: 249
115910 TGGTTGACAA
* * * *
115920 ATAGCCCTTCTTGCCTTGAGCTATACTGCAAATGATGTGCCTTGGAGTTAAGCGTAGTCGAACTC
1 ATAGCCCTTCTCGCCTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTAAGCGTAGTCAAACTC
*
115985 CAAGGTCTTTGGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATGCCTTGGA
66 AAAGGTCTTTGGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATGCCTTGGA
* * * *
116050 GCTGAGCGTAGTCGAACTCGAAGATGTTTTTGTCACATATAACCCTTCTAGCCTTGAGTTATGCT
131 GCTGAGCGTAGTCGAACTCGAAGATCTTTTTGGCACATATAACCCTTCTAGACTTAAGTTATGCT
*
116115 GTAAATGATGTGCTCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAG
196 GCAAATGATGTGCTCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAG
*
116169 ATAGCCCTTCTCGACC-TAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGAGCGTAGTCAAAC
1 ATAGCCCTTCTCG-CCTTAAGCTATACTGCAAATGATGTGCC-TTGGAGCTAAGCGTAGTCAAAC
*
116232 TCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATGCCTTG
64 TCAAAGGTCTTTGGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATGCCTTG
* *
116297 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCA-A-ATAACCCTTCTCGACTTAAGTTA
129 GAGCTGAGCGTAGTCGAACTCGAAGATCTTT--TTGGCACATATAACCCTTCTAGACTTAAGTTA
*
116360 TGTTGCAAATGA
192 TGCTGCAAATGA
116372 ACACGATATC
Statistics
Matches: 184, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
249 174 0.95
250 5 0.03
251 5 0.03
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (249 bp):
ATAGCCCTTCTCGCCTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTAAGCGTAGTCAAACTC
AAAGGTCTTTGGTTGGCAGACAACCCTTCTAGATTCAAGTTGTGCTGCAAATGATATGCCTTGGA
GCTGAGCGTAGTCGAACTCGAAGATCTTTTTGGCACATATAACCCTTCTAGACTTAAGTTATGCT
GCAAATGATGTGCTCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAG
Found at i:116909 original size:105 final size:105
Alignment explanation
Indices: 116390--117464 Score: 1902
Period size: 105 Copynumber: 10.2 Consensus size: 105
116380 TCCTTTGCTA
* *
116390 TGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAA-TGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
* *
116455 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTTGCTG
65 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* *
116496 TGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
116561 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
65 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* *
116602 TGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
116667 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
65 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
* *
116708 TGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
*
116773 AAGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTTCGTTG
65 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
116814 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
*
116879 AGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTTCGTTG
66 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
116919 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
*
116984 AGTTGAACTTGCGGTGTCTGGAGTCCAATATCCTTCGTTG
66 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
117024 TGAAGTTGAAATTGGCTCTGAAATT-GAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
*
117088 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTG
66 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
117128 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTCGTTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
117193 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
66 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
117233 TGAAGTTGAAATTGGCTCTGAAATT-GAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
*
117297 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTG
66 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
117337 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
117402 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
66 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
*
117442 TGAAGTTGAAATTGGCGCTGAAA
1 TGAAGTTGAAATTGGCTCTGAAA
117465 GTGTTAACTG
Statistics
Matches: 940, Mismatches: 26, Indels: 7
0.97 0.03 0.01
Matches are distributed among these distances:
104 201 0.21
105 400 0.43
106 339 0.36
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (105 bp):
TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
Found at i:117146 original size:209 final size:209
Alignment explanation
Indices: 116390--117464 Score: 1891
Period size: 209 Copynumber: 5.1 Consensus size: 209
116380 TCCTTTGCTA
* * *
116390 TGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAAATTGGCTCTGAAATT--GAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
*
116455 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTT-GCTGTGAAGTTGAAATTGGCTCTGAAA
64 AAGTTGAACTTGCGTTGTCTGGAGTCCAATAT-CTTTCGTTGTGAAGTTGAAATTGGCTCTGAAA
* *
116519 TTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
128 TTGGGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
116584 GTCCAATATCCTTCGTTG
192 GTCCAATATCCTTCGTTG
*
116602 TGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
1 TGAAGTTGAAATTGGCTCTGAAATTGA-AA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTG
*
116667 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAAT
64 AAGTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAAT
* *
116732 TGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
129 TGGGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
*
116797 TCCAATACCCTTCGTTG
193 TCCAATATCCTTCGTTG
* *
116814 TGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
1 TGAAGTTGAAATTGGCTCTGAAATT-GAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
* *
116879 AGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT
65 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT
* *
116944 GGGAAATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGGTGTCTGGAGTC
130 GGGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
117009 CAATATCCTTCGTTG
195 CAATATCCTTCGTTG
117024 TGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
1 TGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
117089 GTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
66 GTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
*
117154 GGAAATGTTCGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
131 GGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
117219 AATATCCTTCGTTG
196 AATATCCTTCGTTG
117233 TGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
1 TGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
117298 GTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
66 GTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
*
117363 GGAAATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
131 GGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
117428 AATATCCTTCGTTG
196 AATATCCTTCGTTG
*
117442 TGAAGTTGAAATTGGCGCTGAAA
1 TGAAGTTGAAATTGGCTCTGAAA
117465 GTGTTAACTG
Statistics
Matches: 835, Mismatches: 24, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
209 406 0.49
210 98 0.12
211 106 0.13
212 224 0.27
213 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (209 bp):
TGAAGTTGAAATTGGCTCTGAAATTGAAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
GTTGAACTTGCGTTGTCTGGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
GGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
AATATCCTTCGTTG
Found at i:121332 original size:36 final size:36
Alignment explanation
Indices: 121264--121333 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
121254 AAAACAACAA
* *
121264 AATATAATAAATAAAATAAAATAAAATTTAAAAAGT
1 AATAAAATAAATAAAATAAAATAAAATATAAAAAGT
* *
121300 AATAAAATAAATGAAAT-AAATATATATATAAAAA
1 AATAAAATAAATAAAATAAAATA-AAATATAAAAA
121334 CCATAATAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 5 0.17
36 24 0.83
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (36 bp):
AATAAAATAAATAAAATAAAATAAAATATAAAAAGT
Found at i:122673 original size:20 final size:21
Alignment explanation
Indices: 122631--122677 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
122621 TCCTACAAAA
122631 AATAA-AATAAAGAAATTATT
1 AATAATAATAAAGAAATTATT
*
122651 AATAATAATAAATAAATTA-T
1 AATAATAATAAAGAAATTATT
122671 AATAATA
1 AATAATA
122678 GAAATATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (21 bp):
AATAATAATAAAGAAATTATT
Found at i:127549 original size:21 final size:20
Alignment explanation
Indices: 127517--127556 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
127507 ATAATAAATA
*
127517 TAATAACGAAAAAAATAATT
1 TAATAAAGAAAAAAATAATT
*
127537 TAATAAAGTAAAATAATAAT
1 TAATAAAG-AAAAAAATAAT
127557 AATGTAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (20 bp):
TAATAAAGAAAAAAATAATT
Found at i:127558 original size:16 final size:16
Alignment explanation
Indices: 127537--127574 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
127527 AAAAATAATT
127537 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
127553 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
127569 T-ATAAA
1 TAATAAA
127575 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:127817 original size:11 final size:11
Alignment explanation
Indices: 127735--127818 Score: 55
Period size: 11 Copynumber: 7.3 Consensus size: 11
127725 TTATATACGT
*
127735 TAATAGTAAAA
1 TAATATTAAAA
*
127746 TAATAATAAATA
1 TAATATTAAA-A
127758 TAATAGTTATAAA
1 TAATA-TTA-AAA
*
127771 TATATATATATAA
1 TA-ATAT-TAAAA
127784 TAACT-TTAAAA
1 TAA-TATTAAAA
*
127795 -AACATTAAAA
1 TAATATTAAAA
*
127805 TAATATTAGAA
1 TAATATTAAAA
127816 TAA
1 TAA
127819 AAATAATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
10 8 0.14
11 24 0.41
12 8 0.14
13 11 0.19
14 7 0.12
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (11 bp):
TAATATTAAAA
Found at i:128339 original size:35 final size:36
Alignment explanation
Indices: 128264--128359 Score: 122
Period size: 35 Copynumber: 2.6 Consensus size: 36
128254 GTGCTTGTGG
* *
128264 ATCCTATCTTTAGGAGTTTAAAACATAACAAAATTCT
1 ATCCTAT-TTTAGGAGTTTGAATCATAACAAAATTCT
* *
128301 ATCCTATTTTAGGAG-TTGAATCATAGCAGAATTCT
1 ATCCTATTTTAGGAGTTTGAATCATAACAAAATTCT
*
128336 ATCCTATTTTTGAGAGTTTGAATC
1 ATCCTATTTTAG-GAGTTTGAATC
128360 CTAGTAGGAC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
35 27 0.52
36 11 0.21
37 14 0.27
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTGAATCATAACAAAATTCT
Found at i:129219 original size:109 final size:107
Alignment explanation
Indices: 128873--129764 Score: 614
Period size: 109 Copynumber: 8.6 Consensus size: 107
128863 TGGAACCGGG
** * ** * *
128873 AAATTGTTTGTTGACAGTCAGCCGCCCCTTCCCTGTGAAGTTGAGCTTGTGCTGTCTCGAGT-CT
1 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGC-
* * * * *
128937 A--ATATCCTTCG-CTGTGAAGTTGAAATTGACTCTG-AA-CG-
65 ACGATATCCTCCGTC-GTGGAGTTGAAATCGGCTCTGAAATTGA
* *
128975 AAA-T-CTTGTTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-C-
1 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* * *
129036 CAATATCCTTCG-C-TGCGAAGTTGAAATTGGCTCTGAAATTTGA
66 CGATATCCTCCGTCGTG-G-AGTTGAAATCGGCTCTGAAA-TTGA
*
129079 AAAATGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGC
1 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-GC
** *
129144 ACGATATCCTCCGTCGTGGAGTTGAAATC-GCGGATGAAACTGA
65 ACGATATCCTCCGTCGTGGAGTTGAAATCGGC-TCTGAAATTGA
* *
129187 AAAGTTGTTCGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGGGTAG
1 AAA-TTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT-G
* *
129252 CACGATATCCTCCGTCGTGGAGTTGAAATCGGCTCTGGAATTGGG
64 CACGATATCCTCCGTCGTGGAGTTGAAATCGGCTCTGAAATT-GA
* *
129297 AAATTATTTGTTGACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGT-C-
1 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* * * * *
129360 CAATATCCTTCG-CTGTGAAGTT-AAGATTGGCTC------CG-
66 CGATATCCTCCGTC-GTGGAGTTGAA-ATCGGCTCTGAAATTGA
* * ** * * * ** * *
129395 AAATTGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTCCTGTCTTGGGT-C-
1 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
* * * * ** * * *
129458 CAATATCCTTCGTTGTGAAGTTGAAATTAGCCCTGAAACTGGG
66 CGATATCCTCCGTCGTGGAGTTGAAATCGGCTCTGAAA-TTGA
* *
129501 AAATT-ATTGTTGACATA-CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTTC
1 AAATTGTTTGTTGACA-ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGC
* * * * *
129564 A--ATATCCTTCG-CTGTGAAGTTGAGATTGGCTC-------CA
65 ACGATATCCTCCGTC-GTGGAGTTGAAATCGGCTCTGAAATTGA
* * ** * * * * * *
129598 AAATTGTTTGTCGATAGTCAGCCG-CCCATTTGCTGTGAAGTTGAGCTTGTGTTGCCTTGGGT-C
1 AAATTGTTTGTTGACAACCAGCCGTCCC-TTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGC
* * * * * *
129661 -CAATATCCTTCAC-T-GTGAAGTTGAAATTGGCCCTGAAACTGGG
65 ACGATATCC-TC-CGTCGTGGAGTTGAAATCGGCTCTGAAA-TTGA
*
129704 AAATT-ATTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
1 AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
129765 CCAATATCAT
Statistics
Matches: 645, Mismatches: 93, Indels: 101
0.77 0.11 0.12
Matches are distributed among these distances:
97 9 0.01
98 144 0.22
99 4 0.01
100 78 0.12
101 3 0.00
102 3 0.00
103 1 0.00
104 3 0.00
105 117 0.18
106 92 0.14
107 1 0.00
108 9 0.01
109 171 0.27
110 8 0.01
111 2 0.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (107 bp):
AAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGCA
CGATATCCTCCGTCGTGGAGTTGAAATCGGCTCTGAAATTGA
Found at i:129465 original size:98 final size:98
Alignment explanation
Indices: 129315--129794 Score: 464
Period size: 105 Copynumber: 4.8 Consensus size: 98
129305 TGTTGACAAC
*
129315 CAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAG
1 CAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAG
*
129380 TT-AAGATTGGCTCCGAAATTGCTTGTCGACAGT
66 TTGAA-ATTGGCTCCGAAATTGATTGTCGACAGT
* ** * * *
129413 CAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTCCTGTCTTGGGTCCAATATCCTTCGTTGTGAAG
1 CAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAG
* * *
129478 TTGAAATTAGC-CCTGAAACTGGGAAATTATTGTTGACA-T
66 TTGAAATTGGCTCC-GAAA-T------TGATTGTCGACAGT
* * *
129517 ACAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTTCAATATCCTTCGCTGTGAA
1 -CAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAA
* * * *
129582 GTTGAGATTGGCTCCAAAATTGTTTGTCGATAGT
65 GTTGAAATTGGCTCCGAAATTGATTGTCGACAGT
* * * * * * *
129616 CAGCCGCCCATTTGCTGTGAAGTTGAGCTTGTGTTGCCTTGGGTCCAATATCCTTCACTGTGAAG
1 CAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAG
* * **
129681 TTGAAATTGGC-CCTGAAACTGGGAAATTATTGTTGACAAC
66 TTGAAATTGGCTCC-GAAA-T------TGATTGTCGACAGT
* * * *
129721 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCATTCTCTGTGAAG
1 CAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAG
*
129786 TCGAAATTG
66 TTGAAATTG
129795 ACTCTAGCTA
Statistics
Matches: 306, Mismatches: 56, Indels: 33
0.77 0.14 0.08
Matches are distributed among these distances:
97 4 0.01
98 145 0.47
99 5 0.02
104 2 0.01
105 148 0.48
106 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (98 bp):
CAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAG
TTGAAATTGGCTCCGAAATTGATTGTCGACAGT
Found at i:129611 original size:203 final size:204
Alignment explanation
Indices: 128827--129799 Score: 1073
Period size: 203 Copynumber: 4.7 Consensus size: 204
128817 ATTGTTCCGA
* * * * * **
128827 GTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTGTTTGTTGACAGTC
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATT-ATTGTTGACAACC
* ** * * *
128892 AGCCGCCCCTTCCCTGTGAAGTTGAGCTTGTGCTGTCTCGAGTCTAATATCCTTCGCTGTGAAGT
65 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGT
* * * * * *
128957 TGAAATTGACTCTGAACGAAAT-CTTGTTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTT
130 TGAAATTGGCTCTCAA--AATTGCTTGTCGACAATCAGCCGCCCCTTCGCTGTGAAGTTGAACTT
*
129021 GTGTTGTCTCGA
193 GTGTTGTCTCGG
* * **
129033 GTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGT-TTGTTGACAAC
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-CTGGGAAAT-TATTGTTGACAAC
* *
129097 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCACGATATCCTCCG-TCGT
64 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT--C-CAATATCCTTCGCT-GT
* * * * * * * *
129161 GGAGTTGAAATCGCGGATGAAACTGAAAAGTTG-TTCGTTGACAACCAGCCGTCCCTTCGTTGTG
125 GAAGTTGAAAT--TGGCT----CTCAAAA-TTGCTT-GTCGACAATCAGCCGCCCCTTCGCTGTG
129225 AAGTTGAACTTGTGTTGTCTCGG
182 AAGTTGAACTTGTGTTGTCTCGG
* * * * * *
129248 GTAGCACGATATCCTCCG-TCGTGGAGTTGAAATCGGCTCTGGAATTGGGAAATTATTTGTTGAC
1 GT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTA-TTGTTGAC
*
129312 AACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
61 AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* * *
129377 AAGTT-AAGATTGGCTC-CGAAATTGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAG
126 AAGTTGAA-ATTGGCTCTCAAAATTGCTTGTCGACAATCAGCCGCCCCTTCGCTGTGAAGTTGAA
** *
129440 CTTGTCCTGTCTTGG
190 CTTGTGTTGTCTCGG
* * *
129455 GTCCAATATCCTTCGTTGTGAAGTTGAAATTAGCCCTGAAACTGGGAAATTATTGTTGACATA-C
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTATTGTTGACA-ACC
*
129519 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTTCAATATCCTTCGCTGTGAAGT
65 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGT
* * * * * * *
129584 TGAGATTGGCTC-CAAAATTGTTTGTCGATAGTCAGCCGCCCATTTGCTGTGAAGTTGAGCTTGT
130 TGAAATTGGCTCTCAAAATTGCTTGTCGACAATCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGT
* *
129648 GTTGCCTTGG
195 GTTGTCTCGG
* *
129658 GTCCAATATCCTTCACTGTGAAGTTGAAATTGGCCCTGAAACTGGGAAATTATTGTTGACAACCA
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTATTGTTGACAACCA
* * *
129723 GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCATTCTCTGTGAAGTC
66 GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTT
*
129788 GAAATTGACTCT
131 GAAATTGGCTCT
129800 AGCTAAAACC
Statistics
Matches: 660, Mismatches: 78, Indels: 60
0.83 0.10 0.08
Matches are distributed among these distances:
202 1 0.00
203 266 0.40
204 41 0.06
205 2 0.00
206 85 0.13
207 52 0.08
208 8 0.01
209 22 0.03
211 2 0.00
213 5 0.01
214 5 0.01
215 75 0.11
216 3 0.00
217 9 0.01
218 84 0.13
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (204 bp):
GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTATTGTTGACAACCA
GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTT
GAAATTGGCTCTCAAAATTGCTTGTCGACAATCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTG
TTGTCTCGG
Found at i:130301 original size:104 final size:103
Alignment explanation
Indices: 130189--130418 Score: 241
Period size: 103 Copynumber: 2.2 Consensus size: 103
130179 ATTTTGTTTT
* * * * *
130189 AAGA-AAAACTATCTCAAGAGAGATAAAACTTAGTTCCAAAAGAAATTGTCTCACGGGGAGATGA
1 AAGAGAAAACTATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCA-AGAGAGACGA
130253 AATT-AGTTCCAAGGAAAACATATTCAAAGATGATGCTTC
65 AATTCA-TTCCAAGGAAAACATATTCAAAGATGATGCTTC
* * * * * *
130292 AAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGACGAA
1 AAGAGAAAACTATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGAGACGAA
* * ** * * * * *
130357 ATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTC
66 ATTCATTCCAAGGAAAACATATTCAAAGATGATGCTTC
130395 AAGAG-AAACTATCTCAAGAGAGAC
1 AAGAGAAAACTATCTCAAGAGAGAC
130419 GAAATTCATT
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
102 17 0.17
103 44 0.43
104 42 0.41
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (103 bp):
AAGAGAAAACTATCTCAAGAGAGACAAAACTTAGTTCCAAAAGAAACTGTCTCAAGAGAGACGAA
ATTCATTCCAAGGAAAACATATTCAAAGATGATGCTTC
Found at i:130428 original size:65 final size:65
Alignment explanation
Indices: 130324--130504 Score: 308
Period size: 65 Copynumber: 2.8 Consensus size: 65
130314 GACAAAATTT
130324 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
130389 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * **
130454 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAA-TTCATTTCAAGGGAAA
130505 CTATCTCAAG
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
65 95 0.87
66 14 0.13
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:130495 original size:102 final size:102
Alignment explanation
Indices: 130389--130847 Score: 783
Period size: 102 Copynumber: 4.5 Consensus size: 102
130379 TCAATGTTTA
* *
130389 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
130454 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
130491 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
130556 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
*
130593 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * **
130658 TGTTTCAAGAGAAACTGTCTCAATGGTGACGGAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
*
130695 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
130760 TGTTTCAAGAGAAACTGTCTCAATGGAGAAAAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAG-ACAAAATTT
* * **
130798 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTTTGTTTCAAGGGAAA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAA
130848 CTGTCTCAAG
Statistics
Matches: 338, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
102 287 0.85
103 51 0.15
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
Found at i:130579 original size:167 final size:169
Alignment explanation
Indices: 130289--130606 Score: 550
Period size: 167 Copynumber: 1.9 Consensus size: 169
130279 AAGATGATGC
*
130289 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
1 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTATCTCAAGAGAGAC
*
130354 GAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
*
130419 GAAA-TTCATTTCAAGGGAAATGTTTTCAATGTTTATGT
131 AAAATTTCATTTCAAGGGAAATGTTTTCAATGTTTATGT
*
130457 TTCAAGAG-AAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGAC
1 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTATCTCAAGAGAGAC
* *
130521 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAC
66 AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
**
130586 AAAATTTTGTTTCAAGGGAAA
131 AAAATTTCATTTCAAGGGAAA
130607 CTATCTCAAG
Statistics
Matches: 141, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
167 119 0.84
168 22 0.16
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (169 bp):
TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGAGAAACTATCTCAAGAGAGAC
AAAATTCATTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGAC
AAAATTTCATTTCAAGGGAAATGTTTTCAATGTTTATGT
Found at i:130843 original size:36 final size:36
Alignment explanation
Indices: 130760--130865 Score: 158
Period size: 36 Copynumber: 2.9 Consensus size: 36
130750 TCAATGTTTA
* * * *
130760 TGTTTCAAGAGAAACTGTCTCAATGGAGAAAAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAA--GAGAGACAAAGTT
130798 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
130834 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
130866 TGGTGAGCAC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 42 0.66
38 22 0.34
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
Found at i:132389 original size:20 final size:20
Alignment explanation
Indices: 132364--132424 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
132354 TTTTTGTTCC
*
132364 CTTTTTTATTTTTGTTCTTT
1 CTTTTTTATTCTTGTTCTTT
* *
132384 CTTTTTTGTTCTTGTTTTTT
1 CTTTTTTATTCTTGTTCTTT
*
132404 CCTTTTTAGCTTCTT-TTCTTT
1 CTTTTTTA--TTCTTGTTCTTT
132425 TTTCTTTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 23 0.70
21 5 0.15
22 5 0.15
ACGTcount: A:0.03, C:0.15, G:0.07, T:0.75
Consensus pattern (20 bp):
CTTTTTTATTCTTGTTCTTT
Found at i:135794 original size:21 final size:24
Alignment explanation
Indices: 135758--135817 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
135748 ATATATATAT
* *
135758 ATAATAAATATAATAACG-AAAA-A
1 ATAAT-AATGTAATAAAGTAAAATA
*
135781 A-AATAATTTAATAAAGTAAAATA
1 ATAATAATGTAATAAAGTAAAATA
135804 ATAATAATGTAATA
1 ATAATAATGTAATA
135818 TAATATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 10 0.32
22 7 0.23
23 3 0.10
24 11 0.35
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (24 bp):
ATAATAATGTAATAAAGTAAAATA
Found at i:135810 original size:16 final size:16
Alignment explanation
Indices: 135789--135826 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
135779 AAAAATAATT
135789 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
135805 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
135821 T-ATAAA
1 TAATAAA
135827 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:136017 original size:11 final size:11
Alignment explanation
Indices: 135997--136080 Score: 64
Period size: 11 Copynumber: 7.3 Consensus size: 11
135987 TTATATACGT
*
135997 TAATAGTAAAA
1 TAATATTAAAA
*
136008 TAATAATAAATA
1 TAATATTAAA-A
136020 TAATAGTTATAAA
1 TAATA-TTA-AAA
*
136033 TATATATATATAA
1 TA-ATAT-TAAAA
136046 TAACT-TTAAAA
1 TAA-TATTAAAA
136057 -AATATTAAAA
1 TAATATTAAAA
*
136067 TAATATTAGAA
1 TAATATTAAAA
136078 TAA
1 TAA
136081 AAATAATTAA
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
9 1 0.02
10 8 0.13
11 25 0.42
12 8 0.13
13 11 0.18
14 7 0.12
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.36
Consensus pattern (11 bp):
TAATATTAAAA
Found at i:136032 original size:26 final size:25
Alignment explanation
Indices: 136003--136099 Score: 62
Period size: 24 Copynumber: 3.9 Consensus size: 25
135993 ACGTTAATAG
136003 TAAAATAATAATAAATATAATAGTTA
1 TAAAATAATAATAAATATAATA-TTA
*
136029 T-AAAT-AT-ATATATATAATAACTT-
1 TAAAATAATAATAAATATAAT-A-TTA
*
136052 TAAAA-AATATTAAA-ATAATATTA
1 TAAAATAATAATAAATATAATATTA
* * *
136075 GAATAAAAATAATTAATATATATAT
1 TAA-AATAATAATAAATATA-ATAT
136100 ATACTTAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 17
0.70 0.09 0.22
Matches are distributed among these distances:
22 2 0.04
23 14 0.25
24 17 0.31
25 14 0.25
26 4 0.07
27 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAAATAATAATAAATATAATATTA
Found at i:138618 original size:15 final size:15
Alignment explanation
Indices: 138580--138627 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
138570 TTTTCTTTGA
*
138580 TATTGAAAAATAAA-
1 TATTTAAAAATAAAT
*
138594 TA-TT-AAAATAATT
1 TATTTAAAAATAAAT
138607 TATTTAAAAATAAAT
1 TATTTAAAAATAAAT
138622 TATTTA
1 TATTTA
138628 TTATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 4 0.14
15 14 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
TATTTAAAAATAAAT
Found at i:139971 original size:3 final size:3
Alignment explanation
Indices: 139963--140037 Score: 107
Period size: 3 Copynumber: 25.0 Consensus size: 3
139953 TATATATATT
*
139963 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* *
140012 T-A TTA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
140038 ATAAATTAAT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
2 2 0.03
3 62 0.93
4 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:140349 original size:36 final size:36
Alignment explanation
Indices: 140302--140380 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
140292 CTTTCCATGG
* *
140302 TGAACTTCTTCTTTTTCAGATTAGTTCTTCTCATTA
1 TGAACTTCTTCTTGTTCAGATGAGTTCTTCTCATTA
140338 TGAACTTCTTCTTGTTCAGATGAGTTCTTCTCATTA
1 TGAACTTCTTCTTGTTCAGATGAGTTCTTCTCATTA
*
140374 TAAACTT
1 TGAACTT
140381 TCTCTGGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.49
Consensus pattern (36 bp):
TGAACTTCTTCTTGTTCAGATGAGTTCTTCTCATTA
Found at i:140691 original size:113 final size:113
Alignment explanation
Indices: 140326--140987 Score: 978
Period size: 113 Copynumber: 5.9 Consensus size: 113
140316 TTCAGATTAG
* * *
140326 TTCTTCTCATTATGAACTTC-T--T-CTTGTTCAGATGAGTTCTTCTCATTATAAACT-TTCTCT
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAC-CT
* * *
140386 GGAAAAGCTGATCCATCAAGTGATGGA-TTAGAACAAAAGGTTGAACAAA
65 GGAAAAGATAATCCATCAAGTGATAGATTTA-AACAAAAGGTTGAACAAA
* *
140435 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAGGAACTCTAC
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCTAC
* * * * * * * * * *
140500 CTGGCAATGTTGATCCATCAAATGAT-GAATTCAAAAAAAAAAGTTGAATAAG
63 CTGGAAAAGATAATCCATCAAGTGATAG-ATT-TAAACAAAAGGTTGAACAAA
* * **
140552 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCATATGAGTACTTCTCATTATGAACTCTTTCTG
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
140617 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
140665 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
*
140730 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAATAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
*
140778 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTA
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
140843 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
**
140891 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
140956 GAAAAGATAATCCATCAAGTGATAGATTTAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAA
140988 TCTTTGCTAA
Statistics
Matches: 502, Mismatches: 39, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
109 20 0.04
110 1 0.00
112 1 0.00
113 338 0.67
114 45 0.09
115 2 0.00
116 42 0.08
117 52 0.10
118 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
Found at i:141793 original size:92 final size:83
Alignment explanation
Indices: 141713--142016 Score: 475
Period size: 83 Copynumber: 3.5 Consensus size: 83
141703 CCTACTGAAT
141713 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
*
141778 TGATTGGTTTTGGGGTTCATACTAAAC
66 TGATTGG---T----TT--TACCAAAC
*
141805 CATATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAATATTCATCTTTCAACTTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAA-ATTCATCTTTCAACTTC
141869 AATGATTGGTTTTACCAAAC
64 AATGATTGGTTTTACCAAAC
*
141889 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
141954 TGATTGGTTTTACCAAAC
66 TGATTGGTTTTACCAAAC
141972 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCA
142017 CCTGGCATTT
Statistics
Matches: 205, Mismatches: 4, Indels: 15
0.92 0.02 0.07
Matches are distributed among these distances:
83 83 0.40
84 49 0.24
86 2 0.01
90 1 0.00
92 42 0.20
93 28 0.14
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (83 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
TGATTGGTTTTACCAAAC
Found at i:143188 original size:16 final size:15
Alignment explanation
Indices: 143167--143221 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
143157 CTTGACCCCC
143167 CTTTTTTCTTTTTTCT
1 CTTTTTTCTTTTTT-T
*
143183 CTTTTTT-TTTTCTT
1 CTTTTTTCTTTTTTT
143197 C-TTTTTCTTTTTTTT
1 CTTTTTTC-TTTTTTT
143212 CTTTTTTCTT
1 CTTTTTTCTT
143222 CAAGCATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 5 0.15
14 2 0.06
15 14 0.41
16 13 0.38
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
CTTTTTTCTTTTTTT
Found at i:154603 original size:15 final size:15
Alignment explanation
Indices: 154565--154612 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
154555 TTTTCTTTGA
*
154565 TATTGAAAAATAAA-
1 TATTTAAAAATAAAT
*
154579 TA-TT-AAAATAATT
1 TATTTAAAAATAAAT
154592 TATTTAAAAATAAAT
1 TATTTAAAAATAAAT
154607 TATTTA
1 TATTTA
154613 TTATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 4 0.14
15 14 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
TATTTAAAAATAAAT
Found at i:154667 original size:22 final size:23
Alignment explanation
Indices: 154641--154687 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
154631 ATAAAAATAT
*
154641 TTAAAAAT-ATAAACAAATAAAA
1 TTAAAAATAATAAAAAAATAAAA
*
154663 TT-AAAATAATAAAAAAATACAA
1 TTAAAAATAATAAAAAAATAAAA
154685 TTA
1 TTA
154688 GAACGATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (23 bp):
TTAAAAATAATAAAAAAATAAAA
Found at i:155945 original size:2 final size:2
Alignment explanation
Indices: 155940--155964 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
155930 TTATTATTAT
155940 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
155965 TTAATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:155974 original size:3 final size:3
Alignment explanation
Indices: 155966--156013 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
155956 TATATATATT
* *
155966 TAA TAA TAA TAA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
156014 ATAAATTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:161047 original size:8 final size:8
Alignment explanation
Indices: 161034--161074 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
161024 CTCATTTTCA
161034 GAGAATTT
1 GAGAATTT
161042 GAGAATTT
1 GAGAATTT
*
161050 -AGAGTTT
1 GAGAATTT
*
161057 GGGAATTT
1 GAGAATTT
161065 GAGAATTT
1 GAGAATTT
161073 GA
1 GA
161075 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:161373 original size:128 final size:128
Alignment explanation
Indices: 161145--161645 Score: 950
Period size: 128 Copynumber: 3.9 Consensus size: 128
161135 TAATCGGAGT
*
161145 ACTATTCACATGAAGGCACGTTCCCGGGGCGCGCGCCTTCCATTATTTTGTCA-AGAATATGTTA
1 ACTATTCACATGAAGGCGCGTTCCCGGGG-GCGCGCCTTCCATTATTTTGTCAGAGAATATGTTA
161209 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
65 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
161273 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
161338 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
161401 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTTTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
161466 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
161529 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAAAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
*
161594 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAAATATATCAGTA
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
161646 AATCAGGTAA
Statistics
Matches: 367, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
127 23 0.06
128 344 0.94
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (128 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:163008 original size:34 final size:34
Alignment explanation
Indices: 162964--163071 Score: 153
Period size: 34 Copynumber: 3.2 Consensus size: 34
162954 TAAGTTGAAA
* *
162964 TTTAATTTTAAATTTCGAATACTATAATTTATAT
1 TTTAAATTTAAATTTCGAATAATATAATTTATAT
* *
162998 TTTAAATTTAAATTTCGAATAATATTATTTTTAT
1 TTTAAATTTAAATTTCGAATAATATAATTTATAT
* * *
163032 TTTTATTTTAAATTTCGAATAATATAATTTGTAT
1 TTTAAATTTAAATTTCGAATAATATAATTTATAT
163066 TTTAAA
1 TTTAAA
163072 AACATTTATC
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (34 bp):
TTTAAATTTAAATTTCGAATAATATAATTTATAT
Found at i:163657 original size:21 final size:21
Alignment explanation
Indices: 163590--163660 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
163580 TATGGTATAA
* * *
163590 AACCCTGCGGGTTAGGCATGT
1 AACCCTGCAGGCTAGGAATGT
*
163611 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCAGGCTAGGAATGT
*
163632 AACCCTGCAGGCTCGGAATGT
1 AACCCTGCAGGCTAGGAATGT
163653 AACCCTGC
1 AACCCTGC
163661 GGAGATGGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.07
21 38 0.86
22 3 0.07
ACGTcount: A:0.23, C:0.27, G:0.31, T:0.20
Consensus pattern (21 bp):
AACCCTGCAGGCTAGGAATGT
Found at i:165783 original size:50 final size:50
Alignment explanation
Indices: 165721--165815 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
165711 TTAATGGAAG
165721 GCGCGTCTCCGGGGATGCACCTTCCACACGTGGCAGTCGAGTCAGTGAAT
1 GCGCGTCTCCGGGGATGCACCTTCCACACGTGGCAGTCGAGTCAGTGAAT
*
165771 GCGCGT-TCCCGGGGATGCGCCTTCCACACGTGGCAGTCGAGTCAG
1 GCGCGTCT-CCGGGGATGCACCTTCCACACGTGGCAGTCGAGTCAG
165816 CGAAAACACG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 1 0.02
50 42 0.98
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (50 bp):
GCGCGTCTCCGGGGATGCACCTTCCACACGTGGCAGTCGAGTCAGTGAAT
Found at i:166528 original size:2 final size:2
Alignment explanation
Indices: 166523--166579 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
166513 TTTTTAAAAA
166523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
166565 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
166580 CCTCAACCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:180395 original size:13 final size:13
Alignment explanation
Indices: 180344--180387 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
180334 GTCATAAATC
*
180344 TATGACACACATT
1 TATGACACGCATT
180357 TATGACACGCATT
1 TATGACACGCATT
*
180370 TATGACGCGCATT
1 TATGACACGCATT
180383 TATGA
1 TATGA
180388 TACTCATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TATGACACGCATT
Found at i:180486 original size:85 final size:84
Alignment explanation
Indices: 180367--180527 Score: 252
Period size: 85 Copynumber: 1.9 Consensus size: 84
180357 TATGACACGC
* * *
180367 ATTTATGACGCGCATTTATGATACTCATTACGTGTCATTGAAGCCCCCGTCATAAATGAATATGA
1 ATTTATGACACGCATGTATGATAC-CATTACGTGTCATTGAAGCCCCCGTCATAAATGAAGATGA
180432 CACACATTTGTGTGTAATAA
65 CACACATTTGTGTGTAATAA
*
180452 ATTTATGACACGCATGTATGACTTA-CATTGCGTGTCATTGAAGCCCCCGTCATAAATGAAGATG
1 ATTTATGACACGCATGTATGA--TACCATTACGTGTCATTGAAGCCCCCGTCATAAATGAAGATG
180516 ACACACATTTGT
64 ACACACATTTGT
180528 ATGACTTACA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
85 68 0.97
87 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (84 bp):
ATTTATGACACGCATGTATGATACCATTACGTGTCATTGAAGCCCCCGTCATAAATGAAGATGAC
ACACATTTGTGTGTAATAA
Found at i:194487 original size:6 final size:6
Alignment explanation
Indices: 194476--194500 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
194466 CTTCACTTAC
194476 GGGGAT GGGGAT GGGGAT GGGGAT G
1 GGGGAT GGGGAT GGGGAT GGGGAT G
194501 AGGAACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.68, T:0.16
Consensus pattern (6 bp):
GGGGAT
Found at i:195239 original size:21 final size:21
Alignment explanation
Indices: 195215--195267 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
195205 GATTCTGACA
*
195215 TCGCATTGTGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
195236 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
195257 TCGCAATGCGA
1 TCGCATTGCGA
195268 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:195282 original size:20 final size:20
Alignment explanation
Indices: 195257--195343 Score: 106
Period size: 20 Copynumber: 4.3 Consensus size: 20
195247 TTTTCCTAAT
195257 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
195277 TCGCAACGCGAATTTA-GAAAA
1 TCGCAATGCGAA--TACGTAAA
*
195298 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
195318 TCGCAATGCGAAT-CTGTAAA
1 TCGCAATGCGAATAC-GTAAA
195338 TCGCAA
1 TCGCAA
195344 CGAGATTCTG
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
19 3 0.05
20 38 0.67
21 14 0.25
22 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:195302 original size:41 final size:40
Alignment explanation
Indices: 195257--195343 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 40
195247 TTTTCCTAAT
*
195257 TCGCAATGCGAATACGTAAATCGCAACGCGAATTTAGAAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGAATCT-GAAAA
* * *
195298 TCGCAATGCGATTACGTAAATCGCAATGCGAATCTGTAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGAATCTGAAAA
195338 TCGCAA
1 TCGCAA
195344 CGAGATTCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 10 0.24
41 32 0.76
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (40 bp):
TCGCAATGCGAATACGTAAATCGCAACGCGAATCTGAAAA
Found at i:195353 original size:20 final size:20
Alignment explanation
Indices: 195272--195353 Score: 78
Period size: 20 Copynumber: 4.0 Consensus size: 20
195262 ATGCGAATAC
195272 GTAAATCGCAACGCGAATT-T
1 GTAAATCGCAACGCG-ATTCT
* *
195292 AGAAAATCGCAATGCGATTAC-
1 -GTAAATCGCAACGCGATT-CT
* *
195313 GTAAATCGCAATGCGAATCT
1 GTAAATCGCAACGCGATTCT
*
195333 GTAAATCGCAACGAGATTCT
1 GTAAATCGCAACGCGATTCT
195353 G
1 G
195354 ACTATCGCAA
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.02
20 37 0.73
21 13 0.25
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (20 bp):
GTAAATCGCAACGCGATTCT
Found at i:196227 original size:24 final size:24
Alignment explanation
Indices: 196200--196253 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
196190 GTATTCGAAA
196200 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
196224 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
196248 TTTGAT
1 TTTGAT
196254 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:198766 original size:20 final size:20
Alignment explanation
Indices: 198679--198765 Score: 113
Period size: 20 Copynumber: 4.3 Consensus size: 20
198669 CAACGCGGAA
198679 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCGGAA-ATGACT
*
198699 ATCGCAACACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
* *
198719 ATCGTAACGCGGAATTGACT
1 ATCGCAACGCGGAAATGACT
* *
198739 ATTGCAATGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
198759 ATCGCAA
1 ATCGCAA
198766 TAACAGAATC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
20 54 0.95
21 3 0.05
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:198796 original size:33 final size:33
Alignment explanation
Indices: 198742--198833 Score: 112
Period size: 33 Copynumber: 2.7 Consensus size: 33
198732 ATTGACTATT
** *
198742 GCAATGCGGAAATGACTATCGCAATAACAGAATC
1 GCAATGC-GAAATGAAAATCGCAACAACAGAATC
* **
198776 GCAATGCGAAATGAAAATCGCAACGAGTGAATC
1 GCAATGCGAAATGAAAATCGCAACAACAGAATC
198809 GCAATGCGAAAATGAAAATCGCAAC
1 GCAATGCG-AAATGAAAATCGCAAC
198834 GCGGCGATTC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
33 28 0.55
34 23 0.45
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (33 bp):
GCAATGCGAAATGAAAATCGCAACAACAGAATC
Found at i:198827 original size:34 final size:33
Alignment explanation
Indices: 198771--198834 Score: 119
Period size: 34 Copynumber: 1.9 Consensus size: 33
198761 CGCAATAACA
198771 GAATCGCAATGCGAAATGAAAATCGCAACGAGT
1 GAATCGCAATGCGAAATGAAAATCGCAACGAGT
198804 GAATCGCAATGCGAAAATGAAAATCGCAACG
1 GAATCGCAATGCG-AAATGAAAATCGCAACG
198835 CGGCGATTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 13 0.43
34 17 0.57
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.14
Consensus pattern (33 bp):
GAATCGCAATGCGAAATGAAAATCGCAACGAGT
Found at i:198996 original size:14 final size:14
Alignment explanation
Indices: 198977--199013 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
198967 CATCAATTAA
198977 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
198991 ACAAATCATCTTTT
1 ACAAATCAACATTT
199005 ACAAATCAA
1 ACAAATCAA
199014 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:200471 original size:42 final size:42
Alignment explanation
Indices: 200364--200471 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
200354 TCTAGAATGT
* * *
200364 TGGGAG-GGACCTCTTCAACGATGACAGTGGCCTCTTGAACGG
1 TGGGAGAGG-CCTCTTGAACGATGACAGGGGCCTCTTGAACGA
* * ** *
200406 TGGGAGGGGACTCTTGAGGGATGATAGGGGCCTCTTGAACGA
1 TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGA
200448 TAGGG-GAGGCCTCTTGAACGATGA
1 T-GGGAGAGGCCTCTTGAACGATGA
200472 AAGGTGAGTC
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 48 0.91
43 5 0.09
ACGTcount: A:0.22, C:0.19, G:0.38, T:0.21
Consensus pattern (42 bp):
TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGA
Found at i:201025 original size:33 final size:33
Alignment explanation
Indices: 200952--201035 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 33
200942 TCTGAAACTT
* ** * *
200952 AAAATCGCAACGCGAAAATGACTATCGCAACGAG
1 AAAATCGCAACGCG-AAATAAAAATCGCAACAAC
* *
200986 AGAATCGCAATGCGAAATAAAAATCGCAACAAC
1 AAAATCGCAACGCGAAATAAAAATCGCAACAAC
201019 AAAATCGCAACGCGAAA
1 AAAATCGCAACGCGAAA
201036 ATGACTATCA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
33 29 0.71
34 12 0.29
ACGTcount: A:0.49, C:0.23, G:0.18, T:0.11
Consensus pattern (33 bp):
AAAATCGCAACGCGAAATAAAAATCGCAACAAC
Done.