genome.fa.s777.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000777.1 Hibiscus syriacus cultivar Beakdansim tig00001511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133676

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7175--7200	9	2.9	9	100	0	52	53	23	0	23	1.46
7227--7314	29	3.0	30	80	3	90	39	5	18	36	1.74
9554--9579	2	13.0	2	100	0	52	50	0	0	50	1.00
12614--12641	14	2.0	14	100	0	56	42	0	14	42	1.45
14121--14170	19	2.5	21	87	6	68	26	26	20	28	1.99
14141--14190	19	2.6	20	84	6	59	26	28	18	28	1.98
16989--17029	19	2.1	20	82	13	50	43	2	7	46	1.44
33122--33147	8	3.2	8	100	0	52	38	0	11	50	1.39
35523--35588	29	2.3	29	97	0	123	10	33	0	56	1.34
39333--39366	14	2.4	14	100	0	68	67	0	0	32	0.91
46307--46422	4	29.8	4	73	11	98	27	1	2	68	1.13
46301--46422	18	6.1	20	78	16	110	27	1	2	68	1.12
46863--46892	14	2.1	15	93	6	53	30	0	0	70	0.88
48616--48666	18	2.8	18	96	0	93	43	1	1	52	1.23
51046--51087	15	2.9	15	89	3	59	52	4	0	42	1.22
52461--52521	29	2.0	32	81	9	74	44	3	4	47	1.41
52461--52523	32	2.0	32	81	12	76	44	3	4	47	1.40
52673--52723	25	2.1	25	85	10	70	37	1	3	56	1.29
52880--52973	48	2.0	47	80	11	106	43	1	3	52	1.24
53412--53501	37	2.5	35	81	3	99	67	0	4	27	1.09
53448--53501	25	2.2	25	80	12	58	74	0	3	22	0.98
54487--54587	38	2.8	36	86	3	130	46	4	5	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54489--54723	36	6.4	36	72	12	142	46	4	6	42	1.50
54491--54641	36	4.1	36	81	4	151	47	4	6	41	1.50
54548--54760	108	2.0	107	80	9	238	49	5	6	38	1.50
54745--54821	39	2.0	39	85	10	104	46	2	3	46	1.34
61357--61864	164	3.1	164	86	2	707	29	25	21	23	1.99
61344--61868	81	6.4	79	76	6	429	29	25	21	23	1.99
62438--62588	36	4.1	36	81	4	151	47	4	6	41	1.50
62495--62705	106	2.0	106	80	10	236	50	5	6	38	1.50
62690--62768	39	2.0	41	85	9	110	48	2	3	45	1.34
62811--62852	14	2.9	15	85	3	59	21	2	0	76	0.90
67154--67191	18	2.1	18	90	0	58	28	0	0	71	0.87
67170--67203	12	2.9	12	86	4	52	35	0	0	64	0.94
72098--72143	23	2.0	23	82	0	56	52	0	4	43	1.21
80066--80448	132	2.9	131	93	1	653	39	17	13	29	1.87
81361--81391	14	2.2	14	94	0	53	3	6	25	64	1.33
81365--81418	24	2.2	24	86	0	81	7	7	22	62	1.46
89342--89401	21	2.9	21	94	0	102	23	25	23	28	2.00
92324--92363	22	1.9	21	90	10	64	12	22	42	22	1.87
94460--94509	23	2.3	21	78	18	57	24	26	26	24	2.00
100966--101004	22	1.9	20	85	15	53	15	23	38	23	1.92
116258--116297	21	1.9	21	89	0	62	10	25	40	25	1.86
116278--116340	20	2.9	21	79	9	65	15	25	34	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122871--122896	13	2.0	13	100	0	52	23	0	38	38	1.55
127719--127821	3	34.7	3	98	1	199	0	33	0	66	0.92
130739--130779	3	13.7	3	100	0	82	0	34	0	65	0.93

Tables:   1

The End!