Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01007770.1 Hibiscus syriacus cultivar Beakdansim tig00110050_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1450453
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 8 of 8

Found at i:1440026 original size:18 final size:18

Alignment explanation


    Indices: 1439979--1440044  Score: 78
    Period size: 18  Copynumber: 3.6  Consensus size: 18

    1439969 CAACGGTCAA

                      *       
    1439979 CGGGTCGGGTCAACGGGT
          1 CGGGTCGGGTAAACGGGT

               *           *    
    1439997 CAACGGTCGGGTAAATGGGT
          1 C--GGGTCGGGTAAACGGGT

               *              
    1440017 CGGTTCGGGTAAACGGGT
          1 CGGGTCGGGTAAACGGGT

                      
    1440035 CGGGTCGGGT
          1 CGGGTCGGGT

    1440045 TGTGACCGGT


Statistics
Matches: 39,  Mismatches: 7, Indels: 4
        0.78            0.14        0.08

Matches are distributed among these distances:
  18   24  0.62
  20   15  0.38

ACGTcount: A:0.15, C:0.18, G:0.47, T:0.20


Consensus pattern (18 bp):   
CGGGTCGGGTAAACGGGT

Done.