genome.fa.s7774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007774.1 Hibiscus syriacus cultivar Beakdansim tig00110055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176222

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170--213	21	2.1	21	91	0	70	15	31	11	40	1.83
2401--2447	20	2.4	19	80	19	69	21	17	10	51	1.75
2582--2627	20	2.3	20	89	10	76	17	17	10	54	1.70
2680--3380	228	3.1	228	93	3	1217	38	8	7	46	1.62
8700--8741	21	2.0	22	85	4	59	33	0	2	64	1.07
10226--10275	20	2.5	20	90	0	82	32	14	18	36	1.90
11603--11688	44	2.0	44	92	0	145	25	26	6	40	1.81
13517--13556	21	1.9	21	89	0	62	37	17	12	32	1.87
16807--17112	149	2.1	148	91	0	486	26	15	22	36	1.93
17088--17148	23	2.7	23	89	2	88	21	26	26	26	1.99
22061--22366	149	2.1	148	89	1	479	25	14	22	37	1.92
22342--22402	23	2.7	23	92	2	97	21	27	26	24	1.99
24662--24699	20	2.1	19	85	14	53	65	0	0	34	0.93
32448--32513	16	3.9	16	71	16	53	74	0	4	21	1.00
32499--32551	22	2.5	20	76	11	52	71	0	5	22	1.06
32456--32528	32	2.3	29	78	15	74	72	0	6	20	1.07
35095--35120	7	3.7	7	100	0	52	15	42	15	26	1.87
35806--35969	33	5.1	33	86	7	219	20	34	15	29	1.94
35806--35969	63	2.5	66	84	7	219	20	34	15	29	1.94
47431--47490	23	2.6	23	91	0	102	28	18	26	26	1.98
48305--48332	14	2.0	14	100	0	56	7	21	28	42	1.79
48657--49478	6	138.7	6	96	2	1484	17	0	31	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54465--54536	3	24.0	3	83	10	94	62	2	0	34	1.10
54955--55035	41	2.0	41	85	2	108	32	23	17	27	1.97
56835--56943	42	2.6	42	89	1	164	34	20	20	24	1.96
56423--57197	267	2.9	265	89	2	1177	32	19	17	30	1.95
57879--57933	22	2.5	22	87	0	74	38	12	10	38	1.79
58681--58727	22	2.1	22	84	7	60	34	25	14	25	1.94
58810--58892	41	2.0	41	88	4	123	26	22	16	33	1.96
60382--60425	5	8.8	5	87	7	63	2	18	0	79	0.83
60387--60455	29	2.4	27	75	20	52	2	15	1	79	0.92
60382--60456	15	5.2	14	78	13	73	2	16	1	80	0.90
60382--60456	10	7.8	9	77	12	62	2	16	1	80	0.90
62970--63001	14	2.3	14	100	0	64	43	6	28	21	1.77
66349--66382	11	3.0	11	91	4	50	76	0	0	23	0.79
66863--66902	18	2.2	18	100	0	80	7	27	5	60	1.45
67788--67878	3	31.0	3	83	8	116	63	1	1	34	1.09
67788--67877	26	3.5	26	89	3	130	63	1	1	34	1.09
74086--74131	24	1.9	24	86	8	67	30	0	4	65	1.12
74109--74146	17	2.3	17	90	4	60	36	0	5	57	1.21
80268--80365	50	2.0	50	83	0	124	17	32	28	21	1.96
80488--80528	10	4.1	10	84	12	57	31	29	0	39	1.57
80651--80872	111	2.0	111	94	0	390	35	8	11	45	1.70
82731--82793	18	3.5	18	84	0	90	31	20	34	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82734--82793	12	5.0	12	79	0	57	31	21	35	11	1.90
82752--82793	21	2.0	21	90	0	66	30	21	35	11	1.90
82731--82783	15	3.5	15	89	0	79	32	20	35	11	1.88
83007--83091	35	2.5	33	78	14	91	25	8	10	55	1.62
87196--87231	2	18.5	2	94	5	65	52	0	0	47	1.00
88202--88463	15	17.5	15	83	10	331	48	1	1	49	1.18
88406--88508	22	4.5	22	72	7	98	39	0	9	50	1.35
88361--88517	69	2.3	66	89	5	226	41	0	6	52	1.27
88443--88556	54	2.1	53	91	1	183	36	0	10	51	1.42
88491--88632	76	1.9	76	92	5	243	34	0	12	52	1.45
88568--88858	32	10.6	29	70	26	140	35	0	12	51	1.43
88568--88734	53	3.2	52	87	8	243	36	0	11	51	1.42
88572--88660	27	3.3	27	72	23	73	34	0	11	53	1.36
88744--88859	32	3.7	32	95	2	209	35	0	13	50	1.42
88839--88881	22	2.0	22	100	0	86	34	0	13	51	1.42
94739--94776	17	2.3	17	90	4	60	57	5	0	36	1.21
94754--94799	24	1.9	24	86	8	67	65	4	0	30	1.12
99880--99960	29	2.8	29	94	3	137	18	22	14	44	1.86
100341--100497	64	2.5	64	75	10	151	26	18	18	36	1.94
111113--111150	20	1.9	20	94	0	67	26	31	26	15	1.96
115532--115565	15	2.3	15	89	0	50	32	32	17	17	1.94
115650--115730	29	2.8	29	94	3	137	17	23	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116109--116265	64	2.5	63	78	10	167	26	18	19	35	1.95
117126--117276	75	2.0	75	98	0	293	34	12	21	31	1.91
118466--118563	43	2.3	43	94	0	178	39	17	21	21	1.92
124753--124797	21	2.1	21	87	0	63	33	13	6	46	1.69
125144--125180	16	2.3	16	100	0	74	43	5	0	51	1.24
131165--131205	3	13.7	3	94	0	73	36	0	0	63	0.95
143419--143561	58	2.4	60	90	4	236	38	10	12	38	1.78
152498--152548	20	2.5	20	100	0	102	33	27	23	15	1.95
153256--153336	22	3.7	22	94	0	135	24	20	25	28	1.99
157729--157814	43	2.1	42	81	14	99	51	13	2	32	1.54
158579--158642	32	2.0	32	90	0	101	42	21	20	15	1.89
168871--168897	2	13.5	2	100	0	54	48	0	0	51	1.00
169760--169815	21	2.7	20	81	8	58	42	1	48	7	1.41
170503--170743	30	8.3	30	76	10	216	17	15	10	56	1.66
173036--173479	36	12.3	36	71	19	236	46	4	6	42	1.50
173076--173502	35	12.0	35	76	12	320	46	4	7	42	1.50
173062--173508	73	6.2	70	78	11	286	45	4	6	42	1.51
173520--173592	11	6.8	11	76	14	73	35	0	1	63	1.04
173524--173583	21	3.0	20	79	13	70	35	0	1	63	1.05

Tables:   1

The End!