Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007776.1 Hibiscus syriacus cultivar Beakdansim tig00110057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2207776
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 11
Found at i:937321 original size:14 final size:15
Alignment explanation
Indices: 937210--937359 Score: 133
Period size: 15 Copynumber: 9.5 Consensus size: 15
937200 TAATAAGGTT
937210 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
937225 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
937240 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
937255 ATTTACTTTAAAATA
1 ATTTATTTTAAAATA
* *
937270 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
937289 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
937307 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
* * *
937321 ATTTATTAGTATGAATTG
1 ATTTATT--T-TAAAATA
937339 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
937353 ATTTATT
1 ATTTATT
937360 AGTATGGATT
Statistics
Matches: 112, Mismatches: 12, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
14 22 0.20
15 57 0.51
16 6 0.05
17 3 0.03
18 11 0.10
19 1 0.01
20 2 0.02
21 4 0.04
22 6 0.05
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:937344 original size:18 final size:18
Alignment explanation
Indices: 937321--937377 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
937311 ATTTTAAATA
937321 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
* *
937339 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGAATTG
*
937353 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGAATTG
937371 ATTTATT
1 ATTTATT
937378 TTAAAATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 2 0.07
17 1 0.03
18 16 0.53
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATGAATTG
Found at i:937346 original size:32 final size:32
Alignment explanation
Indices: 937307--937382 Score: 143
Period size: 32 Copynumber: 2.4 Consensus size: 32
937297 TTTTAAAATA
937307 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTG
*
937339 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTG
937371 ATTTATTTTAAA
1 ATTTATTTTAAA
937383 ATATGGATTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTG
Found at i:937399 original size:54 final size:54
Alignment explanation
Indices: 937330--938002 Score: 346
Period size: 54 Copynumber: 12.3 Consensus size: 54
937320 AATTTATTAG
*
937330 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* *
937384 TATGGATTGATTTA--TT--AT--TGTAGTT-GTGTGGATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTA-TTT---TAA---A--A
937441 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 -TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* ** ** * ** * * *
937496 TATGAATTGATTTATTTTAAA-ATATGGATT-G-ATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATA-ATTTATTAGTATGGA-TTGATTTATTTTA-AAA
** ** * ** * * *
937550 TATGGATTGATTTATTTTAAA-ATATGGATT-G-ATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATA-ATTTATTAGTATGGA-TTGATTTATTTTA-AAA
*
937604 TATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* * * ** * * * ***
937657 TA---ATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
1 TATGGATTGATTTATTTTAAATAATTTA--TT--AGTATGGATTGATTTA-T-TT-TA-AAA
* *
937716 TATGGATTGATTTATTTTAAATAATTTATTAATATAGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
937770 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTAAATAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA-AA
* * * * *
937825 TTTATTAGTATGGATTGA-TTT--AT--TTTA-AAATAT-GATTGATTTATTTT-AAA
1 --TA-T-GGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
937875 TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAATAATTTA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT--A-AA---A
**
937935 TTTGTATGGATTGATTTATTTT-AA-AATGGATT-G---GGATTGATTTATTTTAAAA
1 ----TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
937987 TATGGATTGATTTATT
1 TATGGATTGATTTATT
938003 ATTGTAGTTG
Statistics
Matches: 493, Mismatches: 67, Indels: 124
0.72 0.10 0.18
Matches are distributed among these distances:
46 8 0.02
47 4 0.01
48 35 0.07
49 7 0.01
50 20 0.04
51 5 0.01
52 28 0.06
53 32 0.06
54 185 0.38
55 19 0.04
56 10 0.02
57 8 0.02
58 47 0.10
59 10 0.02
60 8 0.02
61 1 0.00
62 24 0.05
63 7 0.01
64 35 0.07
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:937437 original size:112 final size:108
Alignment explanation
Indices: 937272--937927 Score: 465
Period size: 112 Copynumber: 6.1 Consensus size: 108
937262 TTAAAATAAA
* *
937272 TTATTATAAAATATGGATTGATTTATTTT-AAA-AT--A---ATTTATTTTAAATAATTTATTAG
1 TTATTTTAAAATATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAG
*
937330 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
66 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
* *** *
937373 TTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTGTGGATTGATTTATTTTAAATAATTTA
1 TTATTTTAAAATATGAATTGATTTA-T-TT-TA-AAATATGGATTGATTTATTTTAAATAATTTA
937438 TTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
62 TTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
937485 TTATTTTAAAATATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAG
1 TTATTTTAAAATATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAG
** ** * *
937550 TATGGATTGATTTATTTTAAA-ATATGGATT-G-ATTTATTTTAA
66 TATGGATTGATTTATTTTAAATA-ATTTATTAGTATGGA-TTGAT
* * * * *
937592 ATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAA
1 TTATTTTA-AAATATGAATTGATTTATTTT-AA-AA--TA-T-G----GATTGATTTATTTTAAA
* * * *
937657 TAATTTATTTGTATGGATTGATTTATTTT-AA-AA--TA-T-GGATTGATTTA-
55 TAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
* *** * ** * * ** * * *
937704 TTATTGTAGTTGTATGGATTGATTTATTTT-AAATAATTTATTAATATAGATTGATTTATTT-TA
1 TTATTTTA-AAATATGAATTGATTTATTTTAAAAT-ATGGATTGATTTATTTTAAATAATTTAT-
* *
937767 AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
63 TAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
*
937813 TTATTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATAT-GATTGATTTA-TTT---T-
1 TTATTT---TAA---A--A-TATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATA
*
937872 A---A--A-TATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
57 ATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
937918 TTATTTTAAA
1 TTATTTTAAA
937928 TAATTTATTT
Statistics
Matches: 456, Mismatches: 54, Indels: 92
0.76 0.09 0.15
Matches are distributed among these distances:
99 1 0.00
101 25 0.05
102 37 0.08
103 4 0.01
104 3 0.01
105 48 0.11
106 6 0.01
107 15 0.03
108 84 0.18
109 12 0.03
110 5 0.01
111 2 0.00
112 119 0.26
113 7 0.02
114 6 0.01
115 2 0.00
116 8 0.02
117 23 0.05
118 49 0.11
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (108 bp):
TTATTTTAAAATATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAG
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGAT
Found at i:937453 original size:32 final size:32
Alignment explanation
Indices: 937412--937959 Score: 436
Period size: 32 Copynumber: 17.6 Consensus size: 32
937402 TGTAGTTGTG
937412 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937444 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937476 TGGATTGATTTATTTT-AA-AA--TA-T-G-A
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
*
937501 ---ATTGATTTATTTTAAAA----------TA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937520 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937552 TGGATTGATTTA-TTT---TAA---A--A-TA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937574 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937606 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
* *
937638 TCGATTGATTTATTTTAAATAATTTATTTGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
**
937670 TGGATTGATTTATTTTAAA-ATATGGATT-G-A
1 TGGATTGATTTATTTTAAATA-ATTTATTAGTA
** * * *
937700 TTTATT-ATTGTAGTTGTATGGATTGATTTATT--T-
1 TGGATTGATT-TA-TT-T-T-AAATAATTTATTAGTA
* * * * * *
937733 T-AAATAATTTATTAATATAGATTGATTTATTTTAAAATA
1 TGGATTGATTTATT--T-TA-AATAATTTA--TT--AGTA
937772 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937804 TGGATTGATTTA-TTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
*
937835 TGGATTGATTTATTTTAAAATATGATTGATTTATTTTAAATA
1 TGGATTGATTTATTTT--AA-AT-A---ATTTA--TT-AGTA
937877 TGGATTGATTTATTTTAAATAATTTATTAGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
* *
937909 TAGATTGATTTATTTTAAATAATTTATTTGTA
1 TGGATTGATTTATTTTAAATAATTTATTAGTA
937941 TGGATTGATTTATTTTAAA
1 TGGATTGATTTATTTTAAA
937960 ATGGATTGGG
Statistics
Matches: 432, Mismatches: 28, Indels: 112
0.76 0.05 0.20
Matches are distributed among these distances:
19 1 0.00
22 43 0.10
23 6 0.01
25 2 0.00
26 4 0.01
27 1 0.00
28 5 0.01
29 4 0.01
30 9 0.02
31 43 0.10
32 235 0.54
33 7 0.02
34 12 0.03
35 7 0.02
36 8 0.02
37 2 0.00
38 3 0.01
39 8 0.02
40 11 0.03
41 2 0.00
42 19 0.04
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (32 bp):
TGGATTGATTTATTTTAAATAATTTATTAGTA
Found at i:937499 original size:22 final size:22
Alignment explanation
Indices: 937474--937538 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
937464 AATTTATTAG
937474 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
*
937496 TATGAATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
937518 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
937539 TAATTTATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:937575 original size:22 final size:22
Alignment explanation
Indices: 937550--937592 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
937540 AATTTATTAG
937550 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
937572 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
937593 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:937742 original size:80 final size:78
Alignment explanation
Indices: 937627--937927 Score: 405
Period size: 80 Copynumber: 3.8 Consensus size: 78
937617 ATTTTAAATA
* * *
937627 ATTTATTAGTATCGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATA
1 ATTTATT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATA
937692 TGGATTGATTTATT
65 TGGATTGATTTATT
*
937706 ATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAATATAGATTGATTTATTTTAAAAT
1 ATT-TA-TTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAT
937771 ATGGATTGATTTATTTTAAAT
64 ATGGATTGATTTA---T---T
*
937792 AATTTATTAGTATGGATTGATTTA-TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT
1 -ATTTATT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAAT
937856 AT-GATTGATTTA-T
64 ATGGATTGATTTATT
**
937869 -TTTA-AATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAA
1 ATTTATTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAA
937928 TAATTTATTT
Statistics
Matches: 202, Mismatches: 9, Indels: 27
0.85 0.04 0.11
Matches are distributed among these distances:
73 14 0.07
74 37 0.18
75 4 0.02
77 1 0.00
79 3 0.01
80 67 0.33
81 2 0.01
83 1 0.00
84 10 0.05
85 42 0.21
86 18 0.09
87 3 0.01
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (78 bp):
ATTTATTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATAT
GGATTGATTTATT
Found at i:937771 original size:22 final size:22
Alignment explanation
Indices: 937746--937790 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
937736 ATAATTTATT
937746 AATATAGATTGATTTATTTTAA
1 AATATAGATTGATTTATTTTAA
*
937768 AATATGGATTGATTTATTTTAA
1 AATATAGATTGATTTATTTTAA
937790 A
1 A
937791 TAATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (22 bp):
AATATAGATTGATTTATTTTAA
Found at i:937892 original size:105 final size:107
Alignment explanation
Indices: 937746--938121 Score: 493
Period size: 106 Copynumber: 3.5 Consensus size: 107
937736 ATAATTTATT
937746 AATATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 AATATAGATTGATTTATTTTAAAATATGGATTGATTTATTTT-AATAATTTATTAGTATGGATTG
937811 ATTTA-TTTAAATAATTTATTAGTATGGATTGATTTATTTTAA
65 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA
*
937853 AATAT-GATTGATTTATTTT-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTG
1 AATATAGATTGATTTATTTTAAAATATGGATTGATTTATTTT-AATAATTTATTAGTATGGATTG
*
937916 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAA
65 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA
* *
937959 AATGGATTGGGATTGATTTATTTTAAAATATGGATTGATTTA--TT-AT--TGTAGTT-GTATGG
1 AAT--A-T-AGATTGATTTATTTTAAAATATGGATTGATTTATTTTAATAATTTA-TTAGTATGG
* * *
938018 ATTTATTTATTTTAAATAACTTATTAGTATAGATTGATTTA-TTTAA
61 ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA
***
938064 AATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAATAATTTATTA
1 AATATAGATTGATTTA-T-TT-TA-AAATATGGATTGATTTATTTTAATAATTTATTA
938122 TTGTAGTTGT
Statistics
Matches: 238, Mismatches: 13, Indels: 33
0.84 0.05 0.12
Matches are distributed among these distances:
101 10 0.04
102 2 0.01
103 3 0.01
104 2 0.01
105 70 0.29
106 98 0.41
107 9 0.04
108 5 0.02
109 3 0.01
110 5 0.02
111 14 0.06
112 17 0.07
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (107 bp):
AATATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAATAATTTATTAGTATGGATTGA
TTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA
Found at i:937896 original size:21 final size:21
Alignment explanation
Indices: 937833--937897 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
937823 AATTTATTAG
937833 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTT-AAA
937855 TAT-GATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
937875 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
937896 TA
1 TA
937898 ATTTATTAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
20 6 0.14
21 33 0.79
22 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (21 bp):
TATGGATTGATTTATTTTAAA
Found at i:937903 original size:14 final size:14
Alignment explanation
Indices: 937884--937937 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
937874 ATATGGATTG
937884 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
937898 ATTTATTAGTATAGATTG
1 ATTTATT--T-TA-AATA
937916 ATTTATTTTAAATA
1 ATTTATTTTAAATA
937930 ATTTATTT
1 ATTTATTT
937938 GTATGGATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 17 0.53
15 2 0.06
16 2 0.06
17 2 0.06
18 9 0.28
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:937993 original size:22 final size:22
Alignment explanation
Indices: 937939--938002 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 22
937929 AATTTATTTG
937939 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
937961 TGGATTGGGATTGATTTATTTTAAAA
1 T--A-T-GGATTGATTTATTTTAAAA
937987 TATGGATTGATTTATT
1 TATGGATTGATTTATT
938003 ATTGTAGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 14 0.37
23 1 0.03
24 2 0.05
25 1 0.03
26 20 0.53
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:938105 original size:79 final size:79
Alignment explanation
Indices: 937969--938121 Score: 263
Period size: 79 Copynumber: 1.9 Consensus size: 79
937959 AATGGATTGG
* *
937969 GATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTTATTTATTTTAAA
1 GATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTT-AA
938034 TAACTTATTAGTATA
65 TAACTTATTAGTATA
938049 GATTGATTTA-TTTAAAATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAT
1 GATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAT
*
938113 AATTTATTA
66 AACTTATTA
938122 TTGTAGTTGT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 11 0.16
79 49 0.70
80 10 0.14
ACGTcount: A:0.33, C:0.01, G:0.14, T:0.53
Consensus pattern (79 bp):
GATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAT
AACTTATTAGTATA
Found at i:938118 original size:39 final size:39
Alignment explanation
Indices: 937996--938143 Score: 153
Period size: 39 Copynumber: 3.8 Consensus size: 39
937986 ATATGGATTG
937996 ATTTATTATTGTAGTTGTATGGATTTATTTATTTTAAATA
1 ATTTATTATTGTAGTTGTATGGATTTATTTATTTT-AATA
* * * * * *
938036 ACTTATTA--GTA-TAG-ATTGATTTATTTAAAATATAGATTG
1 ATTTATTATTGTAGTTGTATGGATTTATTT--ATTTTA-A-TA
*
938075 ATTTATTATTGTAGTTGTATGGATTGATTTATTTTAATA
1 ATTTATTATTGTAGTTGTATGGATTTATTTATTTTAATA
938114 ATTTATTATTGTAGTTGTATGGA-TTATTTA
1 ATTTATTATTGTAGTTGTATGGATTTATTTA
938144 AATTTCAGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
36 11 0.13
37 3 0.03
38 13 0.15
39 32 0.37
40 8 0.09
41 7 0.08
42 2 0.02
43 10 0.12
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (39 bp):
ATTTATTATTGTAGTTGTATGGATTTATTTATTTTAATA
Found at i:938171 original size:31 final size:31
Alignment explanation
Indices: 938136--938194 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
938126 AGTTGTATGG
*
938136 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATTTCAGTATTGCAAAACTAAA
938167 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAGTATTGCAAAACT
938195 CTTTAAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTGCAAAACTAAA
Found at i:938790 original size:18 final size:18
Alignment explanation
Indices: 938767--938806 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
938757 AGAGATAAGA
938767 TTCAAAGCAATTCTCTTC
1 TTCAAAGCAATTCTCTTC
938785 TTCAAAGCAATTCTCTTC
1 TTCAAAGCAATTCTCTTC
938803 TTCA
1 TTCA
938807 TCTTCTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.05, T:0.40
Consensus pattern (18 bp):
TTCAAAGCAATTCTCTTC
Found at i:940010 original size:31 final size:31
Alignment explanation
Indices: 939972--940096 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
939962 AGGGTCGAGG
939972 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
940003 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
940034 GTTTACCTATGTTCTTTGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
940065 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
940096 G
1 G
940097 GTCCTTCGGG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
31 87 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:943799 original size:18 final size:20
Alignment explanation
Indices: 943776--943812 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
943766 AGTATGTTCA
943776 GGGG-GTATCGATTCCCCTG
1 GGGGTGTATCGATTCCCCTG
943795 GGGGTGTATCGATTCCCC
1 GGGGTGTATCGATTCCCC
943813 CTAAATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.11, C:0.27, G:0.35, T:0.27
Consensus pattern (20 bp):
GGGGTGTATCGATTCCCCTG
Found at i:944437 original size:31 final size:31
Alignment explanation
Indices: 944399--944523 Score: 180
Period size: 31 Copynumber: 4.0 Consensus size: 31
944389 AGGGTCGAGG
*
944399 GTTTACCTATGTTCTTCGGGACATATGAACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
944430 GTTTACCTATGTTCTTTGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
944461 GTTTACCTATGTTCTTTGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
944492 GATTACCTAAGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
944523 G
1 G
944524 GTCCTTCGGG
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:956989 original size:109 final size:109
Alignment explanation
Indices: 956777--957001 Score: 326
Period size: 109 Copynumber: 2.0 Consensus size: 109
956767 AAAAGACTAT
* *
956777 TCTATCTCTGTTTATATTTCATCATCTCCAACTGATGGGTTAGACTGCACTACAGTTTAGGAGTT
1 TCTATCTCTGTTTATATTTCATCATCTCCAACTGAGGGGTTAGACTGCACTACAGTTTAGAAGTT
*
956842 GTACCTTACCTTTTATAATATTTTATTCACCATGGAAAAGTTCATCTG
66 G---C-TACCTTTTATAATATTTTATTCACCATGGAAAAGTTCATCGG
* * * **
956890 TCTATTTCTGTTTATATTTCTTCATCTCCTACTGAAGGGGTTAGACTGCGTTACAGTTTAGAAGT
1 TCTATCTCTGTTTATATTTCATCATCTCCAACTG-AGGGGTTAGACTGCACTACAGTTTAGAAGT
956955 TG-TACCTTTTATAATATTTTATTCACCATGGAAAAGTTCATCGG
65 TGCTACCTTTTATAATATTTTATTCACCATGGAAAAGTTCATCGG
956999 TCT
1 TCT
957002 TCATCCTTGA
Statistics
Matches: 103, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
109 44 0.43
113 31 0.30
114 28 0.27
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (109 bp):
TCTATCTCTGTTTATATTTCATCATCTCCAACTGAGGGGTTAGACTGCACTACAGTTTAGAAGTT
GCTACCTTTTATAATATTTTATTCACCATGGAAAAGTTCATCGG
Found at i:957601 original size:14 final size:13
Alignment explanation
Indices: 957581--957619 Score: 55
Period size: 11 Copynumber: 3.1 Consensus size: 13
957571 TTTTACCGGA
957581 TAAAAAACCGGTT
1 TAAAAAACCGGTT
957594 TGAAAAAACCGG--
1 T-AAAAAACCGGTT
957606 TAAAAAACCGGTT
1 TAAAAAACCGGTT
957619 T
1 T
957620 TTATCCGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 2 0.09
14 10 0.43
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (13 bp):
TAAAAAACCGGTT
Found at i:957612 original size:11 final size:12
Alignment explanation
Indices: 957575--957618 Score: 54
Period size: 11 Copynumber: 3.6 Consensus size: 12
957565 CGGTTTTTTT
*
957575 ACCGGATAAAAA
1 ACCGGTTAAAAA
957587 ACCGGTTTGAAAAA
1 ACCGG-TT-AAAAA
957601 ACCGG-TAAAAA
1 ACCGGTTAAAAA
957612 ACCGGTT
1 ACCGGTT
957619 TTTATCCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 10 0.36
12 7 0.25
13 1 0.04
14 10 0.36
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.16
Consensus pattern (12 bp):
ACCGGTTAAAAA
Found at i:959935 original size:21 final size:21
Alignment explanation
Indices: 959911--959950 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
959901 TTTATTTTAT
959911 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
959932 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
959951 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:959996 original size:33 final size:33
Alignment explanation
Indices: 959945--960043 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
959935 TTTGTTTCAA
959945 TTATCGAAC-TTGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTTGAAGTTTTTAAGTATTTGAAT
959977 TTATCGAACTTTGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTTGAAGTTTTTAAGTATTTGAAT
* * * *
960010 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTTGAAGTTTTTAAGTATTTGAAT
960043 T
1 T
960044 ATGTTGAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 9 0.15
33 53 0.85
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.46
Consensus pattern (33 bp):
TTATCGAACTTTGAAGTTTTTAAGTATTTGAAT
Found at i:960008 original size:17 final size:17
Alignment explanation
Indices: 959954--960008 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
959944 ATTATCGAAC
959954 TTGAAGTTTTTAAGTAT
1 TTGAAGTTTTTAAGTAT
* * *
959971 TTGAA-TTTAT-CGAACT
1 TTGAAGTTTTTAAGTA-T
959987 TTGAAGTTTTTAAGTAT
1 TTGAAGTTTTTAAGTAT
960004 TTGAA
1 TTGAA
960009 TTTATCAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.07
16 10 0.34
17 15 0.52
18 2 0.07
ACGTcount: A:0.31, C:0.04, G:0.16, T:0.49
Consensus pattern (17 bp):
TTGAAGTTTTTAAGTAT
Found at i:960072 original size:13 final size:13
Alignment explanation
Indices: 960029--960083 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
960019 TTGGAAGTAT
960029 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
960042 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
960056 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
960069 TTAAGTATTTGAA
1 TTAAGTATTTCAA
960082 TT
1 TT
960084 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:960305 original size:21 final size:21
Alignment explanation
Indices: 960279--960335 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
960269 TGGAGCATGG
*
960279 GGGAATCGGTACCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
*
960300 GGGAATCGGTTTCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
960321 GGGAATCGGTTCCCT
1 GGGAATCGGTTCCCT
960336 AAGTGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (21 bp):
GGGAATCGGTTCCCTCTCATA
Found at i:960558 original size:15 final size:15
Alignment explanation
Indices: 960501--960559 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 15
960491 ATCTGGAATA
*
960501 TTAAAATCGGTTTTT
1 TTAAAACCGGTTTTT
*
960516 TTATAACCGGTTTTTT
1 TTAAAACCGG-TTTTT
960532 TTAAAAAAAACCGGTTTTT
1 TT----AAAACCGGTTTTT
960551 TTAAAACCG
1 TTAAAACCG
960560 AAACCGATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
15 15 0.42
16 7 0.19
19 7 0.19
20 7 0.19
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (15 bp):
TTAAAACCGGTTTTT
Found at i:960565 original size:21 final size:20
Alignment explanation
Indices: 960520--960556 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
960510 GTTTTTTTAT
960520 AACCGGTTTTTTTTAAAAAA
1 AACCGGTTTTTTTTAAAAAA
960540 AACCGG-TTTTTTTAAAA
1 AACCGGTTTTTTTTAAAA
960557 CCGAAACCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (20 bp):
AACCGGTTTTTTTTAAAAAA
Found at i:960676 original size:15 final size:17
Alignment explanation
Indices: 960650--960681 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
960640 TTCTATGGGA
960650 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
960666 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
960682 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:972102 original size:314 final size:315
Alignment explanation
Indices: 971514--972161 Score: 1086
Period size: 314 Copynumber: 2.1 Consensus size: 315
971504 CTTATTATTG
* * * *
971514 AAACCCACTAAAC-AACAAACAATTCCAGTAAGAATTAGTGTAACTGTCTCTAAAGGAAATTTTC
1 AAACTCACTAACCAAACAAACAATTCCAGAAAGAATTAGTGTAACTGTCTCTAAAAGAAATTTTC
* * *
971578 AAGGCAATGTAGGCAATATATGTCTACAACGTCAACCACCGAAAAGGGTTAGAAAGGTGTATTAC
66 AAGGCAATGTAGGC-ACATATGTCTACAACGTCAACCACCAAAAAGGGTGAGAAAGGTGTATTAC
*
971643 CAGATAGGAATACTATGGCTTTACAGGGAATAAAGTAGAACATGGCAGGCCTTACTAAGGAATTT
130 AAGATAGGAATACTATGGCTTTACAGGGAATAAAGTAGAACATGGCAGGCCTTACTAAGGAATTT
* * * *
971708 TCACAAATCAAAATTCTTGGTAGATTCGATTTCTGAACCCAATTGAAGAGTGTCCAGTTGAAATT
195 TCACAAATCAAAATTCTAGGTAGATCCGATTTCTGAACCCAATTGAAGAGTCTCCACTTGAAATT
*
971773 CTAGTATTAATGGTCACCAACATGAGCAATAGGAATCATAAAGGAAACCACAAGTT
260 CTAGTATTAATGGTCACCAACAAGAGCAATAGGAATCATAAAGGAAACCACAAGTT
971829 AAACTCACTAACCAAACAAACAATTCCAGAAAGAATTAGTGTAACTGTCTCTAAAAGAAATTTTC
1 AAACTCACTAACCAAACAAACAATTCCAGAAAGAATTAGTGTAACTGTCTCTAAAAGAAATTTTC
*
971894 AAGGCAATGTAAGGC-CATATGTCTACAACTTCAACCACCAAAAAGGGTGAGAAAGGTGTATTAC
66 AAGGCAATGT-AGGCACATATGTCTACAACGTCAACCACCAAAAAGGGTGAGAAAGGTGTATTAC
*
971958 AAGATAGG-ATACTATGGCTTTACAGGGAATAAAGTAGAACATGGCAGGCCTTACTAATGAATTT
130 AAGATAGGAATACTATGGCTTTACAGGGAATAAAGTAGAACATGGCAGGCCTTACTAAGGAATTT
* *
972022 TCACAAATCAAAATTCTAGGTAGATCCTATTTCTGAACCCAATTGAAGAGTCTTCACTTGAAATT
195 TCACAAATCAAAATTCTAGGTAGATCCGATTTCTGAACCCAATTGAAGAGTCTCCACTTGAAATT
* *
972087 CTAGTATTTATGGTCACCAACAAGAGCAATAGGAATCATAAAGGAAACTACAAGTT
260 CTAGTATTAATGGTCACCAACAAGAGCAATAGGAATCATAAAGGAAACCACAAGTT
972143 AAACTCACTAACCAAACAA
1 AAACTCACTAACCAAACAA
972162 GTATGTCAAG
Statistics
Matches: 312, Mismatches: 19, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
314 186 0.60
315 63 0.20
316 59 0.19
317 4 0.01
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (315 bp):
AAACTCACTAACCAAACAAACAATTCCAGAAAGAATTAGTGTAACTGTCTCTAAAAGAAATTTTC
AAGGCAATGTAGGCACATATGTCTACAACGTCAACCACCAAAAAGGGTGAGAAAGGTGTATTACA
AGATAGGAATACTATGGCTTTACAGGGAATAAAGTAGAACATGGCAGGCCTTACTAAGGAATTTT
CACAAATCAAAATTCTAGGTAGATCCGATTTCTGAACCCAATTGAAGAGTCTCCACTTGAAATTC
TAGTATTAATGGTCACCAACAAGAGCAATAGGAATCATAAAGGAAACCACAAGTT
Found at i:975257 original size:12 final size:12
Alignment explanation
Indices: 975240--975264 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
975230 TTGGGGTGGT
975240 TTGTTGGTTGTA
1 TTGTTGGTTGTA
975252 TTGTTGGTTGTA
1 TTGTTGGTTGTA
975264 T
1 T
975265 CTTATGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (12 bp):
TTGTTGGTTGTA
Found at i:980550 original size:40 final size:41
Alignment explanation
Indices: 980501--980580 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 41
980491 ATAAGCAAAG
* *
980501 CAAAGCAAATTAAAA-TAGAAA-CAAAATAAGAAAAA-AATAT
1 CAAAGCAAA-TAAAACCAGAAATAAAAATAA-AAAAATAATAT
*
980541 CAAATCAAATAAAACCAGAAATAAAAATAAAAAAATAATA
1 CAAAGCAAATAAAACCAGAAATAAAAATAAAAAAATAATA
980581 ATAAATAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
39 5 0.15
40 18 0.53
41 11 0.32
ACGTcount: A:0.71, C:0.09, G:0.05, T:0.15
Consensus pattern (41 bp):
CAAAGCAAATAAAACCAGAAATAAAAATAAAAAAATAATAT
Found at i:982668 original size:85 final size:85
Alignment explanation
Indices: 982568--982769 Score: 296
Period size: 85 Copynumber: 2.4 Consensus size: 85
982558 TAGTTTTTGT
* * * * *
982568 TTGACAGATAGCCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGTCTTTGAGCTGAGTGTA
1 TTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGACATGCCTTTAAGCTGAATGTA
* *
982633 ATCGCACTCGAAGGTATTGG
66 ATCGAACTCAAAGGTATTGG
982653 TTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGACATGCCTTTAAGCTGAATGTA
1 TTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGACATGCCTTTAAGCTGAATGTA
* *
982718 ATCGAACTCAAAGGTCTTTG
66 ATCGAACTCAAAGGTATTGG
* * *
982738 ATGACAGATAACCTTTCTCGCCTTGAGTTATG
1 TTGACAGATAACCCTTCTCGCCTTGAGCTATG
982770 TTGCACTGGG
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 105 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (85 bp):
TTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGACATGCCTTTAAGCTGAATGTA
ATCGAACTCAAAGGTATTGG
Found at i:983031 original size:65 final size:65
Alignment explanation
Indices: 982935--983062 Score: 175
Period size: 65 Copynumber: 2.0 Consensus size: 65
982925 TCCAAGGATT
* * * *
982935 GTTTCACCAAATCGGTTTTGAGTTGGATATCCTTTATCATGAAGTTGAAATCCAATCTTGAGTAA
1 GTTTCACCAAATCGGTTTTAAGTTAGATATCCTTCATCATGAAGTTAAAATCCAATCTTGAGTAA
* * * **
983000 GTTTCACTAAATTGGTTTTAAGTTAGATATCCTTCGTTGTGAAGTTAAAATCCAATCTTGAGT
1 GTTTCACCAAATCGGTTTTAAGTTAGATATCCTTCATCATGAAGTTAAAATCCAATCTTGAGT
983063 TAATTGTGTC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (65 bp):
GTTTCACCAAATCGGTTTTAAGTTAGATATCCTTCATCATGAAGTTAAAATCCAATCTTGAGTAA
Found at i:984830 original size:99 final size:99
Alignment explanation
Indices: 984641--984837 Score: 261
Period size: 99 Copynumber: 2.0 Consensus size: 99
984631 GGACAACTCA
* * **
984641 ATATTATAATCACATTTATCAGACTAGCTGAATCTTATCTATAAAGCCAGGGTGTTTAACCAATT
1 ATATTATAATCACATTTATCAGACTAGCTGAAGCTTATCCATAAAGCCAGGGCATTTAACCAATT
* *** *
984706 GCTCTAGAGGGATGGTTCAAGCTTTATTGTATAG
66 GATCTAGAGGGAAACTTCAAACTTTATTGTATAG
* * **
984740 ATATTATAATCACCTTTATCAGGCTAGCTGAAGCTTATCCATAAAGCTGGGGCATTTAACCAATT
1 ATATTATAATCACATTTATCAGACTAGCTGAAGCTTATCCATAAAGCCAGGGCATTTAACCAATT
984805 GATCTAGAGGGACAACTT-AAACTTTATTGTATA
66 GATCTAGAGGGA-AACTTCAAACTTTATTGTATA
984838 TATAAAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 82 0.98
100 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (99 bp):
ATATTATAATCACATTTATCAGACTAGCTGAAGCTTATCCATAAAGCCAGGGCATTTAACCAATT
GATCTAGAGGGAAACTTCAAACTTTATTGTATAG
Found at i:988269 original size:11 final size:11
Alignment explanation
Indices: 988239--988375 Score: 57
Period size: 12 Copynumber: 11.9 Consensus size: 11
988229 ACTAATCTCA
*
988239 AAAATAAAAAT
1 AAAATAAAAAC
988250 AAAAT-AAAAC
1 AAAATAAAAAC
* *
988260 ACAATAAAAAG
1 AAAATAAAAAC
*
988271 AGAAAAAAAAAGC
1 A-AAATAAAAA-C
988284 AAAATAAAAAC
1 AAAATAAAAAC
** *
988295 ATAAAGCAAAGC
1 A-AAATAAAAAC
* *
988307 AAATTAAAATAGAA
1 AAAAT-AAA-A-AC
988321 AAAATAAGAAA-
1 AAAATAA-AAAC
*
988332 AAAATATCAAATC
1 AAAATA--AAAAC
988345 -AAATAAAAAC
1 AAAATAAAAAC
*
988355 ATAATTAAAAAC
1 A-AAATAAAAAC
988367 AAAA-AAAAA
1 AAAATAAAAA
988376 TAATAAATAG
Statistics
Matches: 93, Mismatches: 20, Indels: 27
0.66 0.14 0.19
Matches are distributed among these distances:
10 17 0.18
11 22 0.24
12 43 0.46
13 6 0.06
14 5 0.05
ACGTcount: A:0.75, C:0.07, G:0.05, T:0.12
Consensus pattern (11 bp):
AAAATAAAAAC
Found at i:988672 original size:3 final size:3
Alignment explanation
Indices: 988659--988701 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
988649 AATTTAAACA
*
988659 AAT AAT AAAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
988702 TATATAAGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:989806 original size:19 final size:19
Alignment explanation
Indices: 989782--989839 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 19
989772 AAACAAAATA
989782 AAATGTAAATATAATATAT
1 AAATGTAAATATAATATAT
989801 AAATGTAAATATATATAATAT
1 AAATGTAAATATA-AT-ATAT
*
989822 AAATTGT-AATATTATATA
1 AAA-TGTAAATATAATATA
989840 ATATAATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 16 0.46
20 4 0.11
21 12 0.34
22 3 0.09
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
AAATGTAAATATAATATAT
Found at i:989821 original size:21 final size:21
Alignment explanation
Indices: 989778--989845 Score: 90
Period size: 22 Copynumber: 3.3 Consensus size: 21
989768 ATATAAACAA
989778 AATA-AAATGTAAATATA-AT
1 AATATAAATGTAAATATATAT
989797 -ATATAAATGTAAATATATAT
1 AATATAAATGTAAATATATAT
989817 AATATAAATTGT-AATATTATAT
1 AATATAAA-TGTAAATA-TATAT
989839 AATATAA
1 AATATAA
989846 TAATATTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.07
19 13 0.30
20 2 0.05
21 11 0.25
22 15 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AATATAAATGTAAATATATAT
Found at i:992771 original size:60 final size:60
Alignment explanation
Indices: 992694--992845 Score: 159
Period size: 60 Copynumber: 2.5 Consensus size: 60
992684 ATCTTAAATT
* * *
992694 TTTTAAATATTCTAATTTTATC-CCTAAACTATGA-TTATCA-TCTTAAATTAGTCCTCAAAC
1 TTTTAAATATTCTAATTTCATCTCC-AAACTATGACCT-TCATTC-TAAATTAGTCCCCAAAC
* * *
992754 TTTTGAATATTTTAATTTCATCTCCAAACTATGACCTTCATTCTAAATTGGTCCCCAAAC
1 TTTTAAATATTCTAATTTCATCTCCAAACTATGACCTTCATTCTAAATTAGTCCCCAAAC
* * *
992814 TTTTTAAACATTCAAATTTCATC-ACAAACTAT
1 -TTTTAAATATTCTAATTTCATCTCCAAACTAT
992846 ATGTATATAC
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
60 54 0.70
61 23 0.30
ACGTcount: A:0.34, C:0.20, G:0.04, T:0.41
Consensus pattern (60 bp):
TTTTAAATATTCTAATTTCATCTCCAAACTATGACCTTCATTCTAAATTAGTCCCCAAAC
Found at i:998716 original size:30 final size:30
Alignment explanation
Indices: 998682--998738 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
998672 TAAAAATAAC
998682 AGAAAGTTAAAGAACTAAAATAGCAAAAAT
1 AGAAAGTTAAAGAACTAAAATAGCAAAAAT
* *
998712 AGAAATTTAAAGGACTAAAATAGCAAA
1 AGAAAGTTAAAGAACTAAAATAGCAAA
998739 CAAAATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.61, C:0.07, G:0.14, T:0.18
Consensus pattern (30 bp):
AGAAAGTTAAAGAACTAAAATAGCAAAAAT
Found at i:1000650 original size:83 final size:82
Alignment explanation
Indices: 1000497--1000672 Score: 246
Period size: 83 Copynumber: 2.1 Consensus size: 82
1000487 GTGATAACAC
* * * *
1000497 AGTTCCTACGCGATGAGGACGACTGATTATCTAAGGTCACACGACTCCTACGTGATGAGGAGGTC
1 AGTTCCTACGTGATAAGGACGACTGATTATCTAAGGTCACACGACTCCTACATGATAAGGAGGTC
* *
1000562 TGGTCGGTGGATGACAT
66 AGGTCGGTGGATGAAAT
* * *
1000579 GGTTCCTACGTGATAAGGACCG-CTGGTTATCTAAGGGTGACACGACTCCTACATGATAAGGAGG
1 AGTTCCTACGTGATAAGGA-CGACTGATTATCTAA-GGTCACACGACTCCTACATGATAAGGAGG
1000643 TCAGGTCGGTGGATGAAAT
64 TCAGGTCGGTGGATGAAAT
1000662 AGTTCCTACGT
1 AGTTCCTACGT
1000673 AATGAGGATG
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
82 27 0.33
83 55 0.67
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (82 bp):
AGTTCCTACGTGATAAGGACGACTGATTATCTAAGGTCACACGACTCCTACATGATAAGGAGGTC
AGGTCGGTGGATGAAAT
Found at i:1000874 original size:66 final size:66
Alignment explanation
Indices: 1000706--1001035 Score: 437
Period size: 66 Copynumber: 5.0 Consensus size: 66
1000696 AGGAATGATG
* * * * *
1000706 GTTTCAAGAGAAACCGTCTCAAGAGAGAAAAAACGTGTTTTAAGGGAAACAATCTCAAAGGTTTT
1 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAGG---T
**
1000771 TTTT
63 TGGT
*
1000775 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTATTTCAAGGGAAACAATCTCAAAGGTTGG
1 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAGGTTGG
1000840 T
66 T
* * * *
1000841 GTTTCAAGAGAAATTGTCTCAAGTGAGATAAAACTTGTTTCAAGAGAAACAATCTCAAAGGTTGG
1 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAGGTTGG
1000906 T
66 T
* * *
1000907 GTTTCACGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGGTTGG
1 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAGGTTGG
1000972 T
66 T
* * * * *
1000973 GTTTCACGAGAAACTATCTCAAGGGAGACAAAATTTGTTTTAAGAGG-AAGAATCTCAAAGGTT
1 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAG-GGAAACAATCTCAAAGGTT
1001036 ATAAATTTTG
Statistics
Matches: 238, Mismatches: 22, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
66 182 0.76
67 1 0.00
69 55 0.23
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (66 bp):
GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAGGTTGG
T
Found at i:1000897 original size:36 final size:35
Alignment explanation
Indices: 1000706--1000964 Score: 101
Period size: 36 Copynumber: 7.6 Consensus size: 35
1000696 AGGAATGATG
** * *
1000706 GTTTCAAGAGAAACCGTCTCAAGAGAGAAAAAACGT
1 GTTTCAAGAGAAACAATCTCAAG-GAGATAAAACTT
* * * *****
1000742 GTTTTAAGGGAAACAATCTCAA--AGGTTTTTTTT
1 GTTTCAAGAGAAACAATCTCAAGGAGATAAAACTT
** *
1000775 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTT
1 GTTTCAAGAGAAACAATCTCAA-GGAGATAAAACTT
* * * ***
1000811 ATTTCAAGGGAAACAATCTCAA--AGGT---TGGT
1 GTTTCAAGAGAAACAATCTCAAGGAGATAAAACTT
***
1000841 GTTTCAAGAGAAATTGTCTCAAGTGAGATAAAACTT
1 GTTTCAAGAGAAACAATCTCAAG-GAGATAAAACTT
* ***
1000877 GTTTCAAGAGAAACAATCTCAA--AGGT---TGGT
1 GTTTCAAGAGAAACAATCTCAAGGAGATAAAACTT
* ** * *
1000907 GTTTCACGAGAAACTGTCTCAAGGGAGACAAAATTT
1 GTTTCAAGAGAAACAATCTCAA-GGAGATAAAACTT
1000943 GTTTCAAGAGAAACAATCTCAA
1 GTTTCAAGAGAAACAATCTCAA
1000965 AGGTTGGTGT
Statistics
Matches: 149, Mismatches: 59, Indels: 30
0.63 0.25 0.13
Matches are distributed among these distances:
30 38 0.26
33 31 0.21
36 80 0.54
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (35 bp):
GTTTCAAGAGAAACAATCTCAAGGAGATAAAACTT
Found at i:1000912 original size:30 final size:30
Alignment explanation
Indices: 1000812--1000994 Score: 100
Period size: 30 Copynumber: 5.7 Consensus size: 30
1000802 ACAAAACTTA
*
1000812 TTTCAAGGGAAACAATCTCAAAGGTTGGTG
1 TTTCAAGAGAAACAATCTCAAAGGTTGGTG
*** * ***
1000842 TTTCAAGAGAAATTGTCTCAAGTGAGATAAAACTTG
1 TTTCAAGAGAAACAATCTCAA---AGGT---TGGTG
1000878 TTTCAAGAGAAACAATCTCAAAGGTTGGTG
1 TTTCAAGAGAAACAATCTCAAAGGTTGGTG
* ** *
1000908 TTTCACGAGAAACTGTCTCAAGGGAGACAAAATT--TG
1 TTTCAAGAGAAACAATCTCAA---AG-----GTTGGTG
1000944 TTTCAAGAGAAACAATCTCAAAGGTTGGTG
1 TTTCAAGAGAAACAATCTCAAAGGTTGGTG
* *
1000974 TTTCACGAGAAACTATCTCAA
1 TTTCAAGAGAAACAATCTCAA
1000995 GGGAGACAAA
Statistics
Matches: 112, Mismatches: 25, Indels: 32
0.66 0.15 0.19
Matches are distributed among these distances:
28 2 0.02
30 58 0.52
33 10 0.09
36 40 0.36
38 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (30 bp):
TTTCAAGAGAAACAATCTCAAAGGTTGGTG
Found at i:1001130 original size:36 final size:38
Alignment explanation
Indices: 1001067--1001216 Score: 162
Period size: 38 Copynumber: 3.9 Consensus size: 38
1001057 GCAACTTCTG
* *
1001067 AATTTGTGTTTTAA-AGAAAAAATGTCTCAAGCGAGACGA
1 AATTTGT-TTTTAAGAG-AAAATTGTCTCAAGCGAGACAA
* *
1001106 AATTTG-CTTTGAGAG-AAATTGTCTCAAGCGAGACAA
1 AATTTGTTTTTAAGAGAAAATTGTCTCAAGCGAGACAA
* * * * *
1001142 AATTTGTTTTTTAGAGAAAACTATCTCAAGAGAGCCAA
1 AATTTGTTTTTAAGAGAAAATTGTCTCAAGCGAGACAA
*
1001180 AATTTGTTTTTAAGAGAAAACTTGTCTCTAGCGAGAC
1 AATTTGTTTTTAAGAGAAAA-TTGTCTCAAGCGAGAC
1001217 GACACTTTAT
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
36 25 0.27
37 11 0.12
38 38 0.42
39 17 0.19
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (38 bp):
AATTTGTTTTTAAGAGAAAATTGTCTCAAGCGAGACAA
Found at i:1002456 original size:16 final size:16
Alignment explanation
Indices: 1002407--1002456 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
1002397 TTTTCTTTTA
1002407 TTTCTT-TTTTGTTCT
1 TTTCTTCTTTTGTTCT
* *
1002422 TTTTTTC-TTTGATTTT
1 TTTCTTCTTTTG-TTCT
*
1002438 TTTCTTCTTTTGCTCT
1 TTTCTTCTTTTGTTCT
1002454 TTT
1 TTT
1002457 TCTTTGCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
15 9 0.33
16 14 0.52
17 4 0.15
ACGTcount: A:0.02, C:0.14, G:0.06, T:0.78
Consensus pattern (16 bp):
TTTCTTCTTTTGTTCT
Found at i:1002456 original size:17 final size:17
Alignment explanation
Indices: 1002407--1002460 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
1002397 TTTTCTTTTA
*
1002407 TTTCTT-TTTTGTTCTT
1 TTTCTTCTTTTGATCTT
*
1002423 TTT-TTC-TTTGATTTT
1 TTTCTTCTTTTGATCTT
*
1002438 TTTCTTCTTTTGCTCTT
1 TTTCTTCTTTTGATCTT
1002455 TTTCTT
1 TTTCTT
1002461 TGCTTTTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 12 0.39
16 6 0.19
17 13 0.42
ACGTcount: A:0.02, C:0.15, G:0.06, T:0.78
Consensus pattern (17 bp):
TTTCTTCTTTTGATCTT
Found at i:1005936 original size:16 final size:15
Alignment explanation
Indices: 1005909--1005940 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
1005899 TTAAATAAAG
1005909 AAATACAATGGAAAT
1 AAATACAATGGAAAT
1005924 AAATACGAATGGAAAT
1 AAATAC-AATGGAAAT
1005940 A
1 A
1005941 TGCGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.59, C:0.06, G:0.16, T:0.19
Consensus pattern (15 bp):
AAATACAATGGAAAT
Found at i:1006163 original size:29 final size:30
Alignment explanation
Indices: 1006131--1006188 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
1006121 TAAAAATAAT
1006131 AAAAACTTAAAGGACT-AAATAGCAAAAAC
1 AAAAACTTAAAGGACTAAAATAGCAAAAAC
*
1006160 AAAAATTTAAAGGACTAAAATAGCAAAAA
1 AAAAACTTAAAGGACTAAAATAGCAAAAA
1006189 TAGAATTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.64, C:0.10, G:0.10, T:0.16
Consensus pattern (30 bp):
AAAAACTTAAAGGACTAAAATAGCAAAAAC
Found at i:1006500 original size:46 final size:46
Alignment explanation
Indices: 1006458--1006549 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
1006448 AAAACATATC
*
1006458 CTACTTAAGTATAAATAACATTAAAGTACAATGACCTCAACATAAA
1 CTACTTAAGTATAAATAACATTAAAATACAATGACCTCAACATAAA
*
1006504 CTGCTTAAGTATAAATAACATTAAAATACAATGACCTCAACATAAA
1 CTACTTAAGTATAAATAACATTAAAATACAATGACCTCAACATAAA
1006550 TATATACATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.26
Consensus pattern (46 bp):
CTACTTAAGTATAAATAACATTAAAATACAATGACCTCAACATAAA
Found at i:1007633 original size:3 final size:3
Alignment explanation
Indices: 1007625--1007657 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
1007615 TTGTCTGGGA
1007625 TAT TAT TAT TAT TAT TAT TA- TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1007658 ATAATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1011417 original size:55 final size:55
Alignment explanation
Indices: 1011344--1011475 Score: 196
Period size: 55 Copynumber: 2.4 Consensus size: 55
1011334 AATGATTCAT
* *
1011344 GAAGGACATCCGAAGAATGAAGAAATTTGAACCTGATTGAAGAATGAT-TCA-TGAA
1 GAAGGACATCCGATGAATGAAGAAATTTGAACATGATTGAAGAATGATCT-ATTG-A
*
1011399 GAAGGACATCCGATGAATGAAGAAATTTGAACATGATTGAAGACTGATCTATTGA
1 GAAGGACATCCGATGAATGAAGAAATTTGAACATGATTGAAGAATGATCTATTGA
*
1011454 GAAAGACATCCGATGAATGAAG
1 GAAGGACATCCGATGAATGAAG
1011476 TTTGAAGTTG
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
55 68 0.96
56 3 0.04
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (55 bp):
GAAGGACATCCGATGAATGAAGAAATTTGAACATGATTGAAGAATGATCTATTGA
Found at i:1014217 original size:11 final size:10
Alignment explanation
Indices: 1014194--1014227 Score: 52
Period size: 11 Copynumber: 3.4 Consensus size: 10
1014184 GTAGAAAGAG
1014194 AAAAAGA-AA
1 AAAAAGAGAA
1014203 AAAAAGATGAA
1 AAAAAGA-GAA
1014214 AAAAAGAGAA
1 AAAAAGAGAA
1014224 AAAA
1 AAAA
1014228 TTGGAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.30
10 7 0.30
11 9 0.39
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (10 bp):
AAAAAGAGAA
Found at i:1015400 original size:54 final size:54
Alignment explanation
Indices: 1015331--1016789 Score: 1354
Period size: 54 Copynumber: 26.7 Consensus size: 54
1015321 CCGTAAGAAT
1015331 AAGATGTTT-GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
1 AAGAT-TTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * **
1015385 AAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTGCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* **
1015439 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCA-
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * ** *
1015492 AAGATCATTCGAGTTCCATACTTTCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA-
1 AAGAT-TTTCGAGTTCTATACTCCCTG-AAGAAAGAGGGAGCGAACCCGTTT-AAAG
* **
1015548 AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGTAG
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * **
1015603 AAGATTTTCGAGTTCTATACTCCTTGAAGAAAGAGGGAGCGAGCCCGTTTTCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* *
1015657 AAGATTTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCG-TAAGAAG
1 AAGA-TTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA-AAG
* *
1015712 AAGATTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCG-TAAGAAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA-AAG
* *
1015766 AAGATGTTT-GAGTTCTATACTCCCTGAAGAAAGAGTGAGCGAATCCGTTTAAAG
1 AAGAT-TTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
** * * *
1015820 AAGACGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTATAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* **
1015874 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * * *
1015928 AAGATCATTCGAGTTCCATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA-
1 AAGAT-TTTCGAGTTCTATACTCCCTG-AAGAAAGAGGGAGCGAACCCGTTT-AAAG
* **
1015984 AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGTAG
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * * **
1016039 AAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCTGTTTTCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * *
1016093 AAGATCATTCGAGCTT-TATACTTCCTGAAAGAAAG-GGGAGCGAACCCGTTTGCAA-
1 AAGAT-TTTCGAG-TTCTATACTCCCTG-AAGAAAGAGGGAGCGAACCCGTTT-AAAG
* * ** * **
1016148 AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGAAGCGAATTCATTTGCAG
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * *
1016203 AATATTATTCGAGTTTTATACTCCCT-AGAGAAAGAGGAAGCGAACCCGTTTGAAA-
1 AAGATT-TTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTT-AAAG
* * * * * **
1016258 AAGATGTCCGAGTTCCATACACCCT-AGAGAAAGAGGGAGCGAACCTGTAAAAAG
1 AAGATTTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTTAAAG
* * * *
1016312 AATATTTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCAAACCCG-TAAGAAG
1 AAGA-TTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA-AAG
* *
1016367 AAGATTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCG-TAAGAAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA-AAG
* * *
1016421 AACATTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCG-TAAGAAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA-AAG
** * * **
1016475 AAGATTTTTTAGTTCCATACTCCGTGAAGAAAGAGGGAGCGAACCCGTTTTCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
* * * ** **
1016529 AAGATTGTTCGAG-TCTTATACTCTCTGAA-AGAATAGGGAGC-AGACACAATTATTG
1 AAGATT-TTCGAGTTC-TATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCGTTTAAAG
* * * * **
1016584 AAGATTGTTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAGC-AGACACGATTATTG
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCGTTTAAAG
* * * * **
1016639 AAGATTGTTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAGC-AGACACGATTATTG
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCGTTTAAAG
* * * * * **
1016694 AAGATTGTTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAGCAAACACGATTATTG
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGA-AAGAGGGAGCGAACCCGTTTAAAG
* * *
1016749 AAGATTGTTCAAG-TCTCATACTCTCTGAAGAAATAGGGAGC
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAGC
1016790 AGACACGATT
Statistics
Matches: 1232, Mismatches: 135, Indels: 75
0.85 0.09 0.05
Matches are distributed among these distances:
53 13 0.01
54 606 0.49
55 529 0.43
56 82 0.07
57 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (54 bp):
AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAG
Found at i:1015640 original size:109 final size:108
Alignment explanation
Indices: 1015331--1016557 Score: 1425
Period size: 109 Copynumber: 11.3 Consensus size: 108
1015321 CCGTAAGAAT
*
1015331 AAGATGTTT-GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAAAGAAGATTTTCG
1 AAGAT-TTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCG
* * *
1015395 AGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTGCAG
65 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGTAG
* ** *
1015439 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCA-AAGATCATTCG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT-TTTCG
* ** *
1015503 AGTTCCATACTTTCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA
65 AGTTCTATACTCCCTG-AAGAAAGAGGGAGCGAACCCGTTTGTAG
* *
1015548 AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTCG
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCG
* *
1015613 AGTTCTATACTCCTTGAAGAAAGAGGGAGCGAGCCCGTTT-TCAG
65 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGT-AG
* **
1015657 AAGATTTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCG
1 AAGA-TTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCG
* ** *
1015722 AGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTAAGAAG
65 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGTAG
* * * **
1015766 AAGATGTTT-GAGTTCTATACTCCCTGAAGAAAGAGTGAGCGAATCCGTTTAAAGAAGACGTTCG
1 AAGAT-TTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCG
* * *
1015830 AGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTATAG
65 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGTAG
* ** *
1015874 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT-TTTCG
* * *
1015939 AGTTCCATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA
65 AGTTCTATACTCCCTG-AAGAAAGAGGGAGCGAACCCGTTTGTAG
* * *
1015984 AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTTG
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCG
* *
1016049 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCTGTTT-TCAG
65 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGT-AG
* *
1016093 AAGATCATTCGAGCTT-TATACTTCCTGAAAGAAAG-GGGAGCGAACCCGTTTGCAA-AAGATTA
1 AAGAT-TTTCGAG-TTCTATACTCCCTG-AAGAAAGAGGGAGCGAACCCGTTTG-AAGAAGATT-
* * ** * *
1016155 TTCGAGTTCTATACTCCCTAAAGAAAGAGGAAGCGAATTCATTTGCAG
61 TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGTAG
* * * * * *
1016203 AATATTATTCGAGTTTTATACTCCCT-AGAGAAAGAGGAAGCGAACCCGTTTGAAAAAGATGTCC
1 AAGATT-TTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTC
* * * ****
1016267 GAGTTCCATACACCCT-AGAGAAAGAGGGAGCGAACCTGTAAAAAG
64 GAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTTGTAG
* * * **
1016312 AATATTTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCAAACCCGTAAGAAGAAGATTTTCG
1 AAGA-TTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCG
* ** *
1016377 AGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTAAGAAG
65 AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGTAG
* * ** **
1016421 AACATTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTTTA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCGA
* *
1016486 GTTCCATACTCCGTGAAGAAAGAGGGAGCGAACCCGTTT-TCAG
66 GTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGT-AG
*
1016529 AAGATTGTTCGAG-TCTTATACTCTCTGAA
1 AAGATT-TTCGAGTTC-TATACTCCCTGAA
1016558 AGAATAGGGA
Statistics
Matches: 958, Mismatches: 129, Indels: 63
0.83 0.11 0.05
Matches are distributed among these distances:
107 11 0.01
108 301 0.31
109 391 0.41
110 201 0.21
111 54 0.06
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (108 bp):
AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCGA
GTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGTAG
Found at i:1016134 original size:436 final size:435
Alignment explanation
Indices: 1015318--1016566 Score: 1757
Period size: 436 Copynumber: 2.9 Consensus size: 435
1015308 CGTTGTCAGT
*
1015318 AACCCGTAAGAATAAGATGTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTAA
1 AACCCGTAAGAAGAAGATGTTTGAGTTCTATACTCCCTGAAGAAAGA-GGAGCGAACCCGTTTAA
* **
1015383 AGAAGATTTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTGCAGAAGATTTTC
65 AGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTAAAGAAGATTTTC
1015448 GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCA-AAGATCATTCGAGTTCCATA
130 GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCGAGTTCCATA
*
1015512 CTTTCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAAAAGATTATTCGAGTTCTATACTCCCTAAA
195 CTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAAAAGATTATTCGAGTTCTATACTCCCTAAA
* *
1015577 GAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTCGAGTTCTATACTCCTTGAAGAAAGAGGGAG
260 GAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAG
*
1015642 CGAGCCCGTTTTCAGAAGATTTTTCGAGTTCTATACTTCCTG-AAGAAAGAGGGAGCGAACCCGT
325 CGAGCCCGTTTTCAGAAGATTATTCGAGTT-TATACTTCCTGAAAGAAAG-GGGAGCGAACCCGT
* * *
1015706 AAG-AAGAAGATT-TTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCG
388 AAGCAA-AAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGAAGCG
*
1015753 AACCCGTAAGAAGAAGATGTTTGAGTTCTATACTCCCTGAAGAAAGAGTGAGCGAATCCGTTTAA
1 AACCCGTAAGAAGAAGATGTTTGAGTTCTATACTCCCTGAAGAAAGAG-GAGCGAACCCGTTTAA
* *
1015818 AGAAGACGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTATAGAAGATTTTC
65 AGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTAAAGAAGATTTTC
1015883 GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCGAGTTCCATA
130 GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCGAGTTCCATA
1015948 CTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAAAAGATTATTCGAGTTCTATACTCCCTAAA
195 CTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAAAAGATTATTCGAGTTCTATACTCCCTAAA
1016013 GAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAG
260 GAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAG
* * *
1016078 CGAGCCTGTTTTCAGAAGATCATTCGAGCTTTATACTTCCTGAAAGAAAGGGGAGCGAACCCGTT
325 CGAGCCCGTTTTCAGAAGATTATTCGAG-TTTATACTTCCTGAAAGAAAGGGGAGCGAACCCGTA
*
1016143 TGCAAAAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGAAGCG
389 AGCAAAAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGAAGCG
** * ** * * *
1016190 AATTCATTTGCAGAATAT-TATTCGAGTTTTATACTCCCT-AGAGAAAGAGGAAGCGAACCCGTT
1 AACCCGTAAGAAGAAGATGT-TT-GAGTTCTATACTCCCTGA-AGAAAGAGG-AGCGAACCCGTT
* * * * * * ** *
1016253 TGAAA-AAGATGTCCGAGTTCCATACACCCTAGAGAAAGAGGGAGCGAACCTGTAAAAAGAATAT
62 T-AAAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTAAAGAAGA-
* * * **** *
1016317 TTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCAAACCCGTAAGAAGAAGAT-TTTCGAGTT
125 TTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCGAGTT
* ** * *
1016381 CTATACTTCCTG-AAGAAAGAGGGAGCGAACCCGTAAG-AAGAACATT-TTCGAGTTCTATACTT
190 CCATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAA-AAGATTATTCGAGTTCTATACTC
* ** * * * *
1016443 CCTGAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTTTAGTTCCATACTCCGTGAAGAAAG
254 CCTAAAGAAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTTGAGTTCTATACTCCCTGAAGAAAG
* *
1016508 AGGGAGCGAACCCGTTTTCAGAAGATTGTTCGAGTCTTATAC-TCTCTGAAAGAATAGGG
319 AGGGAGCGAGCCCGTTTTCAGAAGATTATTCGAGT-TTATACTTC-CTGAAAGAA-AGGG
1016567 AGCAGACACA
Statistics
Matches: 737, Mismatches: 61, Indels: 30
0.89 0.07 0.04
Matches are distributed among these distances:
434 1 0.00
435 169 0.23
436 325 0.44
437 90 0.12
438 101 0.14
439 51 0.07
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (435 bp):
AACCCGTAAGAAGAAGATGTTTGAGTTCTATACTCCCTGAAGAAAGAGGAGCGAACCCGTTTAAA
GAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCAAACCCGTTTAAAGAAGATTTTCG
AGTTCTATACTCCCTGAAGAAAGAGGGAGCGAGCCCGTTTTCAGAAGATCATTCGAGTTCCATAC
TTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGTAAAAGATTATTCGAGTTCTATACTCCCTAAAG
AAAGAGGGAGCGAACCCGTTTGTAGAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGC
GAGCCCGTTTTCAGAAGATTATTCGAGTTTATACTTCCTGAAAGAAAGGGGAGCGAACCCGTAAG
CAAAAGATTATTCGAGTTCTATACTCCCTAAAGAAAGAGGAAGCG
Found at i:1016587 original size:55 final size:55
Alignment explanation
Indices: 1016528--1016843 Score: 528
Period size: 55 Copynumber: 5.7 Consensus size: 55
1016518 CCCGTTTTCA
* *
1016528 GAAGATTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACAATTATT
1 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
1016583 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
1 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
1016638 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
1 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
*
1016693 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAAACACGATTATT
1 GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
* *
1016748 GAAGATTGTTCAAGTCTCATACTCTCTG-AAGAAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTCATACTCTCTGAAAG-AATAGGGAGCAGACACGATTATT
* * *
1016803 GAAGA-TGATTCGAGTCTTATACTCCCTGAAGGAATAGGGAG
1 GAAGATTG-TTCGAGTCTCATACTCTCTGAAAGAATAGGGAG
1016844 TGAACATGTT
Statistics
Matches: 248, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
54 5 0.02
55 241 0.97
56 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTATT
Found at i:1016875 original size:110 final size:108
Alignment explanation
Indices: 1016490--1016855 Score: 479
Period size: 110 Copynumber: 3.3 Consensus size: 108
1016480 TTTTTAGTTC
* * * * *
1016490 CATACTCCGTG-AAGAAAGAGGGAGCGAACCCGTTTTCAGAAGATTGTTCGAGTCTTATACTCTC
1 CATACTCCCTGAAAG-AATAGGGAGCGAACACGTTTT--GAAGATTGTTCAAGTCTCATACTCTC
*
1016554 TGAAAGAATAGGGAGCAGACACAATTATTGAAGATTGTTCGAGTCT
63 TGAAAGAATAGGGAGCAGACACGATTATTGAAGATTGTTCGAGTCT
* *
1016600 CATACTCTCTGAAAGAATAGGGAGC-AGACACGATTATTGAAGATTGTTCGAGTCTCATACTCTC
1 CATACTCCCTGAAAGAATAGGGAGCGA-ACACG-TT-TTGAAGATTGTTCAAGTCTCATACTCTC
1016664 TGAAAGAATAGGGAGCAGACACGATTATTGAAGATTGTTCGAGTCT
63 TGAAAGAATAGGGAGCAGACACGATTATTGAAGATTGTTCGAGTCT
* *
1016710 CATACTCTCTGAAAGAATAGGGAGCAAACACGATTATTGAAGATTGTTCAAGTCTCATACTCTCT
1 CATACTCCCTGAAAGAATAGGGAGCGAACACG-TT-TTGAAGATTGTTCAAGTCTCATACTCTCT
*
1016775 G-AAGAAATAGGGAGCAGACACGATTGTTGAAGA-TGATTCGAGTCT
64 GAAAG-AATAGGGAGCAGACACGATTATTGAAGATTG-TTCGAGTCT
* * * *
1016820 TATACTCCCTGAAGGAATAGGGAGTGAACATGTTTT
1 CATACTCCCTGAAAGAATAGGGAGCGAACACGTTTT
1016856 CCGATGATCT
Statistics
Matches: 235, Mismatches: 14, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
108 2 0.01
109 8 0.03
110 217 0.92
111 6 0.03
112 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (108 bp):
CATACTCCCTGAAAGAATAGGGAGCGAACACGTTTTGAAGATTGTTCAAGTCTCATACTCTCTGA
AAGAATAGGGAGCAGACACGATTATTGAAGATTGTTCGAGTCT
Found at i:1017037 original size:3 final size:3
Alignment explanation
Indices: 1017031--1017071 Score: 66
Period size: 3 Copynumber: 13.7 Consensus size: 3
1017021 TTTTTCGGGA
1017031 TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TA
1017072 ATAATAATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:1019710 original size:3 final size:3
Alignment explanation
Indices: 1019702--1019728 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1019692 ATAAATTACC
1019702 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1019729 TAAATACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:1019734 original size:12 final size:13
Alignment explanation
Indices: 1019705--1019741 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
1019695 AATTACCATA
1019705 ATAATAATAATA-
1 ATAATAATAATAT
1019717 ATAATAATAATAT
1 ATAATAATAATAT
*
1019730 A-AATACTAATAT
1 ATAATAATAATAT
1019742 TTTTTTAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 22 0.96
13 1 0.04
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:1021069 original size:21 final size:21
Alignment explanation
Indices: 1021031--1021070 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1021021 ATTCATGAAA
* *
1021031 AATAATAATAATATAAGGAGG
1 AATAAAAATAATACAAGGAGG
*
1021052 AATAAAAATAATGCAAGGA
1 AATAAAAATAATACAAGGA
1021071 AAACAAGTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (21 bp):
AATAAAAATAATACAAGGAGG
Found at i:1021222 original size:32 final size:32
Alignment explanation
Indices: 1021181--1021246 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
1021171 CTAAAACGTA
* * **
1021181 AAATAAAATAATAAAAGAAAACAAAGTAAAAT
1 AAATAAAATAACAAAACAAAACAAAACAAAAT
1021213 AAATAAAATAACAAAACAAAACAAAACAAAAT
1 AAATAAAATAACAAAACAAAACAAAACAAAAT
1021245 AA
1 AA
1021247 TAGTTTCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.12
Consensus pattern (32 bp):
AAATAAAATAACAAAACAAAACAAAACAAAAT
Found at i:1021228 original size:27 final size:28
Alignment explanation
Indices: 1021178--1021248 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
1021168 TGGCTAAAAC
*
1021178 GTAAAATAAAATAATAAAAGAAAACAAA
1 GTAAAATAAAATAATAAAACAAAACAAA
1021206 GTAAAAT-AAATAA-AATAACAAAACAAA
1 GTAAAATAAAATAATAA-AACAAAACAAA
** *
1021233 ACAAAACAAAATAATA
1 GTAAAATAAAATAATA
1021249 GTTTCTGAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.06
27 20 0.56
28 13 0.36
29 1 0.03
ACGTcount: A:0.75, C:0.07, G:0.04, T:0.14
Consensus pattern (28 bp):
GTAAAATAAAATAATAAAACAAAACAAA
Found at i:1023888 original size:35 final size:35
Alignment explanation
Indices: 1023835--1023905 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
1023825 CATATAACAC
* *
1023835 ATGTTACATTCAATAATCAACGAGAACAATATATA
1 ATGTTACAATCAACAATCAACGAGAACAATATATA
1023870 ATGTTACAATCAACAATCAACGAGAACAATATATA
1 ATGTTACAATCAACAATCAACGAGAACAATATATA
1023905 A
1 A
1023906 ACAATCAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.51, C:0.15, G:0.08, T:0.25
Consensus pattern (35 bp):
ATGTTACAATCAACAATCAACGAGAACAATATATA
Found at i:1023913 original size:31 final size:32
Alignment explanation
Indices: 1023839--1023913 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 32
1023829 TAACACATGT
* *
1023839 TACATTCAATAATCAACGAGAACAATATATAA
1 TACAATCAACAATCAACGAGAACAATATATAA
1023871 TGTTACAATCAACAATCAACGAGAACAATATATAA
1 ---TACAATCAACAATCAACGAGAACAATATATAA
1023906 -ACAATCAA
1 TACAATCAA
1023914 AGTTTCATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
31 8 0.21
35 30 0.79
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (32 bp):
TACAATCAACAATCAACGAGAACAATATATAA
Found at i:1025326 original size:61 final size:60
Alignment explanation
Indices: 1025231--1025346 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 60
1025221 AGGTGGCACA
* *
1025231 AAGGCGCATGCCCGGGGATGCGCTTTACATGGGTTTTAGCTAACTGGGATGCCACGAGTGT
1 AAGGCGCATGCCCGGGGACGCGCTTTACATGGGTTTT-GCTAACTCGGATGCCACGAGTGT
* * *
1025292 AAGGCGCAT-CCCTGGGGACGCGCTTTACCTGGGTTTTGCTGAGTCGGATGCCACG
1 AAGGCGCATGCCC-GGGGACGCGCTTTACATGGGTTTTGCTAACTCGGATGCCACG
1025347 CTGGTATTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
60 18 0.37
61 31 0.63
ACGTcount: A:0.17, C:0.24, G:0.34, T:0.24
Consensus pattern (60 bp):
AAGGCGCATGCCCGGGGACGCGCTTTACATGGGTTTTGCTAACTCGGATGCCACGAGTGT
Found at i:1025969 original size:20 final size:20
Alignment explanation
Indices: 1025940--1025982 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1025930 TGGAATTATT
*
1025940 ATAATATTTTAAAATTAATA
1 ATAATATTTTAAAATAAATA
* *
1025960 ATAATTTTTTATAATAAATA
1 ATAATATTTTAAAATAAATA
1025980 ATA
1 ATA
1025983 TTAATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAATATTTTAAAATAAATA
Found at i:1029559 original size:138 final size:138
Alignment explanation
Indices: 1029207--1029824 Score: 872
Period size: 138 Copynumber: 4.5 Consensus size: 138
1029197 GGTGAGTTTT
* * * *
1029207 CGGGGGCGTGCCTTCCATTATTTTGTCAGAGAATATGTTATCGTTGTCTTATTATGTCACTTATG
1 CGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCCTATTATGTCACTCATG
** *
1029272 TCCCCCGAAAAACTATTCATGTCTGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
66 TCCCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
*
1029337 CGCGTTTC
131 CGCGTTCC
* * *
1029345 CGGGGG-GCGCCTTCCATTATTTTGTTAGAGAATATATTATCATT-TCCCTATTATGTCAATCAT
1 CGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGT-CCTATTATGTCACTCAT
* * * * * *
1029408 ATCTCCCGAGGAACTATTTATGTCATTACTTATTATTTTTTAGAGGACTTGGCAAAGTGGTGAAA
65 GTCCCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAA
* *
1029473 GCTCATTCC
130 GCGCGTTCC
* * *
1029482 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATATTATCATTGTCCTATTATGTCACCCATG
1 CGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCCTATTATGTCACTCATG
* *
1029547 TCCCCCGGGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTTAAAG
66 TCCCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
*
1029612 CGCGTTCT
131 CGCGTTCC
* *
1029620 CGGGGGCGCACCTTCCATTATTTTGTCAGAGAATATGTTATCATTG-CCTTATTATATCACTCAT
1 CGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCC-TATTATGTCACTCAT
* *
1029684 GTCCCTCGGGGAACTATTCATGTCAGTACCTATTA-TTTTTAGGGGACTTGGCAAAGTGGTGAAA
65 GTCCCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAA
* *
1029748 GTGCGTTCT
130 GCGCGTTCC
*
1029757 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATT-TCCCTATTA--TCACTCAT
1 CGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGT-CCTATTATGTCACTCAT
1029819 GTCCCC
65 GTCCCC
1029825 TAGTGACGCA
Statistics
Matches: 429, Mismatches: 45, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
135 13 0.03
136 1 0.00
137 202 0.47
138 212 0.49
139 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (138 bp):
CGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCCTATTATGTCACTCATG
TCCCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
CGCGTTCC
Found at i:1029725 original size:275 final size:275
Alignment explanation
Indices: 1029207--1029824 Score: 899
Period size: 275 Copynumber: 2.3 Consensus size: 275
1029197 GGTGAGTTTT
* * * * *
1029207 CGGGGGCGTGCCTTCCATTATTTTGTCAGAGAATATGTTATCGTTGTCTTATTATGTCACTTATG
1 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCCTATTATGTCACTCATG
*
1029272 TCCCCCGAAAAACTATTCATGTCTGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
66 TCCCCCGAAAAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
* * * *
1029337 CGCGTTTCCGGGGGGCGCCTTCCATTATTTTGTTAGAGAATATATTATCATTTCCCTATTATGTC
131 CGCGTTTCCGGGGGGCACCTTCCATTATTTTGTCAGAGAATATATTATCATTGCCCTATTATATC
* * *
1029402 AATCATATCTCCCGAGGAACTATTTATGTCATTACTTATTATTTTTTAGAGGACTTGGCAAAGTG
196 AATCATATCTCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGAGGACTTGGCAAAGTG
1029467 GTGAAAGCT-CATTCC
261 GTGAAAG-TGCATTCC
* *
1029482 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATATTATCATTGTCCTATTATGTCACCCATG
1 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCCTATTATGTCACTCATG
*** *
1029547 TCCCCCGGGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTTAAAG
66 TCCCCCGAAAAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
* *
1029612 CGCG-TTCTCGGGGGCGCACCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCTTATTATA
131 CGCGTTTC-CGGGGG-GCACCTTCCATTATTTTGTCAGAGAATATATTATCATTGCCCTATTATA
* * * *
1029676 TCACTCATGTC-CCTCGGGGAACTATTCATGTCAGTACCTATTA-TTTTTAGGGGACTTGGCAAA
194 TCAATCATATCTCC-CGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGAGGACTTGGCAAA
* *
1029739 GTGGTGAAAGTGCGTTCT
258 GTGGTGAAAGTGCATTCC
1029757 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATT-TCCCTATTA--TCACTCAT
1 CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATTGT-CCTATTATGTCACTCAT
1029819 GTCCCC
65 GTCCCC
1029825 TAGTGACGCA
Statistics
Matches: 309, Mismatches: 29, Indels: 12
0.88 0.08 0.03
Matches are distributed among these distances:
273 13 0.04
274 5 0.02
275 214 0.69
276 77 0.25
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (275 bp):
CGGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATTGTCCTATTATGTCACTCATG
TCCCCCGAAAAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGCAAAGTGGTGAAAG
CGCGTTTCCGGGGGGCACCTTCCATTATTTTGTCAGAGAATATATTATCATTGCCCTATTATATC
AATCATATCTCCCGAGGAACTATTCATGTCAGTACCTATTATTTTTTAGAGGACTTGGCAAAGTG
GTGAAAGTGCATTCC
Found at i:1030038 original size:63 final size:63
Alignment explanation
Indices: 1029965--1030092 Score: 229
Period size: 63 Copynumber: 2.0 Consensus size: 63
1029955 GTTATGTGAA
* *
1029965 GTTTGAATAAATTGGATAAATTATTATGGATAAATTGAATAAATGTGAAGTGATAAGTTGGTT
1 GTTTGAATAAATTGGATAAAATATTATGGATAAATTGAATAAATGTGAAGTGATAAGTTAGTT
*
1030028 GTTTGAATAAATTGGATAAAATGTTATGGATAAATTGAATAAATGTGAAGTGATAAGTTAGTT
1 GTTTGAATAAATTGGATAAAATATTATGGATAAATTGAATAAATGTGAAGTGATAAGTTAGTT
1030091 GT
1 GT
1030093 GACATTGAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (63 bp):
GTTTGAATAAATTGGATAAAATATTATGGATAAATTGAATAAATGTGAAGTGATAAGTTAGTT
Found at i:1030061 original size:23 final size:23
Alignment explanation
Indices: 1029971--1030070 Score: 70
Period size: 23 Copynumber: 4.6 Consensus size: 23
1029961 TGAAGTTTGA
* *
1029971 ATAAATTGGATAAATTATTATGG
1 ATAAATTGGATAAAATGTTATGG
* * *
1029994 ATAAATTGAAT-AAATGTGAAGTG
1 ATAAATTGGATAAAATGTTATG-G
* *
1030017 ATAAGTTGG-T----TGTT-TGA
1 ATAAATTGGATAAAATGTTATGG
1030034 ATAAATTGGATAAAATGTTATGG
1 ATAAATTGGATAAAATGTTATGG
*
1030057 ATAAATTGAATAAA
1 ATAAATTGGATAAA
1030071 TGTGAAGTGA
Statistics
Matches: 57, Mismatches: 13, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
17 8 0.14
18 2 0.04
19 3 0.05
22 11 0.19
23 33 0.58
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (23 bp):
ATAAATTGGATAAAATGTTATGG
Found at i:1030082 original size:23 final size:23
Alignment explanation
Indices: 1030034--1030083 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
1030024 GGTTGTTTGA
* * *
1030034 ATAAATTGGATAAAATGTTATGG
1 ATAAATTGAATAAAATGTGAAGG
1030057 ATAAATTGAAT-AAATGTGAAGTG
1 ATAAATTGAATAAAATGTGAAG-G
1030080 ATAA
1 ATAA
1030084 GTTAGTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (23 bp):
ATAAATTGAATAAAATGTGAAGG
Found at i:1030196 original size:14 final size:14
Alignment explanation
Indices: 1030177--1030207 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
1030167 TAACACGTGG
1030177 GTTTTAATGTATAT
1 GTTTTAATGTATAT
1030191 GTTTTAATGTATAT
1 GTTTTAATGTATAT
1030205 GTT
1 GTT
1030208 AAGGATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (14 bp):
GTTTTAATGTATAT
Found at i:1030373 original size:34 final size:34
Alignment explanation
Indices: 1030328--1030400 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
1030318 TTAAGTTGAA
1030328 TTTAATGTTAAATTTCAAATACTATAATTTGTAT
1 TTTAATGTTAAATTTCAAATACTATAATTTGTAT
* **
1030362 TTTAATTTTAAATTTTGAATACTATAATTTGTAT
1 TTTAATGTTAAATTTCAAATACTATAATTTGTAT
1030396 TTTAA
1 TTTAA
1030401 AAACATTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.53
Consensus pattern (34 bp):
TTTAATGTTAAATTTCAAATACTATAATTTGTAT
Found at i:1030942 original size:21 final size:21
Alignment explanation
Indices: 1030918--1030969 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
1030908 GGTGTCATAA
*
1030918 AACCTTGCGGGCTAGGCATGT
1 AACCTTGCGGGCTAGGAATGT
*
1030939 AACCTGGCGGGCTAGGAATGT
1 AACCTTGCGGGCTAGGAATGT
*
1030960 AACCCTGCGG
1 AACCTTGCGG
1030970 AGATGTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (21 bp):
AACCTTGCGGGCTAGGAATGT
Found at i:1031008 original size:42 final size:42
Alignment explanation
Indices: 1030962--1031050 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
1030952 AGGAATGTAA
* * * * *
1030962 CCCTGCGGAGATGTAATATGAACTGGTGGGCTTGGCATATAC
1 CCCTGAGGAAATGTAATATGAAATGGAGGGCTGGGCATATAC
* * * *
1031004 CCCTGAGGAAATGTCATCTGAAATGGAGGTCTGGGCATGTAC
1 CCCTGAGGAAATGTAATATGAAATGGAGGGCTGGGCATATAC
1031046 CCCTG
1 CCCTG
1031051 TGGCATCATC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (42 bp):
CCCTGAGGAAATGTAATATGAAATGGAGGGCTGGGCATATAC
Found at i:1032823 original size:31 final size:32
Alignment explanation
Indices: 1032788--1032854 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 32
1032778 TAAATAAATT
*
1032788 ATAATTATATAAAT-ATTATTTTAATA-AAAAA
1 ATAA-TATATAAATAATTATATTAATATAAAAA
* * *
1032819 ATAATATTTATATAATTATATTAATATAAAAT
1 ATAATATATAAATAATTATATTAATATAAAAA
1032851 ATAA
1 ATAA
1032855 CAACTATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 7 0.23
31 15 0.50
32 8 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (32 bp):
ATAATATATAAATAATTATATTAATATAAAAA
Found at i:1034717 original size:14 final size:13
Alignment explanation
Indices: 1034685--1034718 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
1034675 CATTTTTTTT
1034685 ATTTTTTATTAAA
1 ATTTTTTATTAAA
*
1034698 GTTTTTTATTAAA
1 ATTTTTTATTAAA
1034711 ATATTTTT
1 AT-TTTTT
1034719 TCATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (13 bp):
ATTTTTTATTAAA
Found at i:1036315 original size:12 final size:12
Alignment explanation
Indices: 1036298--1036329 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
1036288 GCATGGAGGG
1036298 TGAGACAAGGAA
1 TGAGACAAGGAA
1036310 TGAGACAAGGAA
1 TGAGACAAGGAA
1036322 TGAGACAA
1 TGAGACAA
1036330 AGGTAGTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.09, G:0.31, T:0.09
Consensus pattern (12 bp):
TGAGACAAGGAA
Found at i:1037771 original size:14 final size:16
Alignment explanation
Indices: 1037752--1037788 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
1037742 CATTCATTCC
1037752 CTCTCTCT-ATCTAT-
1 CTCTCTCTAATCTATG
*
1037766 CTCTCTCTAATCTCTG
1 CTCTCTCTAATCTATG
1037782 CTCTCTC
1 CTCTCTC
1037789 GATTCAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 8 0.40
15 5 0.25
16 7 0.35
ACGTcount: A:0.11, C:0.41, G:0.03, T:0.46
Consensus pattern (16 bp):
CTCTCTCTAATCTATG
Found at i:1041747 original size:30 final size:30
Alignment explanation
Indices: 1041690--1041748 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
1041680 CCGAAATTTA
* * *
1041690 TTCGGTTCGGTTAATACTTTAATAAAAAAG
1 TTCGGTTCGGTTAACACTTAAAGAAAAAAG
**
1041720 TTCGGTTCGGTTAACGGTTAAAGAAAAAA
1 TTCGGTTCGGTTAACACTTAAAGAAAAAA
1041749 AAAATTCAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (30 bp):
TTCGGTTCGGTTAACACTTAAAGAAAAAAG
Found at i:1051421 original size:21 final size:20
Alignment explanation
Indices: 1051395--1051433 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
1051385 TAAGGAATTA
1051395 AACATCATAAACAAAACAAAT
1 AACATCATAAA-AAAACAAAT
*
1051416 AACATCATACAAAAACAA
1 AACATCATAAAAAAACAA
1051434 CCATTCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.67, C:0.21, G:0.00, T:0.13
Consensus pattern (20 bp):
AACATCATAAAAAAACAAAT
Found at i:1054422 original size:24 final size:21
Alignment explanation
Indices: 1054387--1054430 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
1054377 GCTCATTTCT
*
1054387 TTTGAATTTCAAGAGGTACATCC
1 TTTGAATGTCAA-AGG-ACATCC
1054410 TTTGAAATGTCAAAGGACATC
1 TTTG-AATGTCAAAGGACATC
1054431 TTATGGATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 7 0.37
24 7 0.37
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (21 bp):
TTTGAATGTCAAAGGACATCC
Found at i:1057949 original size:20 final size:20
Alignment explanation
Indices: 1057920--1057958 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1057910 TTTCCACCAC
*
1057920 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
1057940 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
1057959 TATGAGCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:1078163 original size:22 final size:22
Alignment explanation
Indices: 1078135--1078179 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
1078125 TAGTACTACT
* *
1078135 ATGAACAGTAATGTATAATACC
1 ATGAACAGTAATGAACAATACC
1078157 ATGAACAGTAATGAACAATACC
1 ATGAACAGTAATGAACAATACC
1078179 A
1 A
1078180 AATGCTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.22
Consensus pattern (22 bp):
ATGAACAGTAATGAACAATACC
Found at i:1079087 original size:22 final size:22
Alignment explanation
Indices: 1079062--1079122 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
1079052 GGCATGTGAA
1079062 ATTTATCCCGAAGGACCTATGT
1 ATTTATCCCGAAGGACCTATGT
*
1079084 ATTTATCCCGAAGGACCTCTGT
1 ATTTATCCCGAAGGACCTATGT
* * *
1079106 ATATGTCTCGAAGGACC
1 ATTTATCCCGAAGGACC
1079123 GTGTAGACCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (22 bp):
ATTTATCCCGAAGGACCTATGT
Found at i:1081936 original size:17 final size:17
Alignment explanation
Indices: 1081914--1081948 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1081904 ATCATCCATG
1081914 AGAACCCACACCAAATA
1 AGAACCCACACCAAATA
*
1081931 AGAACCCCCACCAAATA
1 AGAACCCACACCAAATA
1081948 A
1 A
1081949 AGTTCAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.37, G:0.06, T:0.06
Consensus pattern (17 bp):
AGAACCCACACCAAATA
Found at i:1082309 original size:20 final size:20
Alignment explanation
Indices: 1082282--1082330 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
1082272 AAATAGAATC
1082282 CACC-AAATGCAATTATATG
1 CACCTAAATGCAATTATATG
*
1082301 CACCTAAATGCATTTATATG
1 CACCTAAATGCAATTATATG
*
1082321 AACCTAAATG
1 CACCTAAATG
1082331 TACCCTAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (20 bp):
CACCTAAATGCAATTATATG
Found at i:1095989 original size:20 final size:20
Alignment explanation
Indices: 1095964--1096006 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1095954 TCTAAAATCC
*
1095964 CATTTAGGATCATATAGATG
1 CATTTAGGAGCATATAGATG
*
1095984 CATTTAGGAGCATATAGTTG
1 CATTTAGGAGCATATAGATG
1096004 CAT
1 CAT
1096007 GTGGTGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGAGCATATAGATG
Found at i:1105530 original size:74 final size:74
Alignment explanation
Indices: 1105409--1105563 Score: 238
Period size: 74 Copynumber: 2.1 Consensus size: 74
1105399 ATGGGTGCAG
* * * * *
1105409 ATGACACGCATTTGCCTGTCATTGAAGCCACCGACGTAAATCTCAGATAACACGCAATTACGTGT
1 ATGACATGCATTTGCCTATCATTAAAGCCACCAACATAAATCTCAGATAACACGCAATTACGTGT
1105474 CATAAATCT
66 CATAAATCT
* * *
1105483 ATGACATGCATTTGCCTATCATTAAATCCACCAACATAAATCTCAGATGACACGCAATTGCGTGT
1 ATGACATGCATTTGCCTATCATTAAAGCCACCAACATAAATCTCAGATAACACGCAATTACGTGT
1105548 CATAAATCT
66 CATAAATCT
1105557 ATGACAT
1 ATGACAT
1105564 TTATGACACG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (74 bp):
ATGACATGCATTTGCCTATCATTAAAGCCACCAACATAAATCTCAGATAACACGCAATTACGTGT
CATAAATCT
Found at i:1105597 original size:13 final size:13
Alignment explanation
Indices: 1105561--1105600 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
1105551 AAATCTATGA
*
1105561 CATTTATGACACG
1 CATTTATGACGCG
*
1105574 CATTTATGACGCT
1 CATTTATGACGCG
1105587 CATTTATGACGCG
1 CATTTATGACGCG
1105600 C
1 C
1105601 GTTGAGCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (13 bp):
CATTTATGACGCG
Found at i:1112255 original size:30 final size:29
Alignment explanation
Indices: 1112219--1112299 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 29
1112209 AAATATATAT
*
1112219 AACTTTTCAAAATTATATTTTTAGTCCCTA
1 AACTTTTCAAAATTATATTTTTAG-CCATA
*
1112249 AACTTTTTC-AAATTTTATTCTTTAGCCATA
1 AAC-TTTTCAAAATTATATT-TTTAGCCATA
*
1112279 AAC-TTTCAAAACATATATTTT
1 AACTTTTCAAAA-TTATATTTT
1112300 GTCACTAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 4 0.09
29 5 0.12
30 24 0.56
31 10 0.23
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (29 bp):
AACTTTTCAAAATTATATTTTTAGCCATA
Found at i:1115887 original size:47 final size:47
Alignment explanation
Indices: 1115781--1115893 Score: 138
Period size: 47 Copynumber: 2.4 Consensus size: 47
1115771 ATTTATTTCG
* *
1115781 TTTTTGAATAA-ATGCATGCGAACTAGATATCATGCGGTTAGGTTTA
1 TTTTTGAATAACAAGCATGCGAACTAGATATCATGCGGTTAGGATTA
**** * *
1115827 TTTTTCTCGAACAAGCATGCGAATTAGATATCATGCGGTTAGGATTC
1 TTTTTGAATAACAAGCATGCGAACTAGATATCATGCGGTTAGGATTA
1115874 TTTTTGAATAACAAAGCATG
1 TTTTTGAATAAC-AAGCATG
1115894 GGGGTAGATA
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
46 7 0.13
47 39 0.74
48 7 0.13
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.35
Consensus pattern (47 bp):
TTTTTGAATAACAAGCATGCGAACTAGATATCATGCGGTTAGGATTA
Found at i:1121982 original size:8 final size:8
Alignment explanation
Indices: 1121965--1121999 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
1121955 AGATCCTCCC
1121965 ATAT-TAT
1 ATATGTAT
1121972 ATATGTAT
1 ATATGTAT
1121980 ATATGTAT
1 ATATGTAT
1121988 ATATGTAT
1 ATATGTAT
1121996 ATAT
1 ATAT
1122000 ATATCTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.15
8 23 0.85
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (8 bp):
ATATGTAT
Found at i:1121990 original size:16 final size:15
Alignment explanation
Indices: 1121965--1122003 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
1121955 AGATCCTCCC
1121965 ATATTATATATGTAT
1 ATATTATATATGTAT
1121980 ATATGTATATATGTAT
1 ATAT-TATATATGTAT
1121996 ATA-TATAT
1 ATATTATAT
1122004 CTTTCATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.22
15 4 0.17
16 14 0.61
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (15 bp):
ATATTATATATGTAT
Found at i:1125136 original size:14 final size:13
Alignment explanation
Indices: 1125115--1125311 Score: 168
Period size: 13 Copynumber: 14.6 Consensus size: 13
1125105 TATTTCGCCT
1125115 GAAAAAAAATAAAA
1 GAAAAAAAA-AAAA
* *
1125129 -AGAAAAAAAAGA
1 GAAAAAAAAAAAA
1125141 GAAAAAAAGAAAGAA
1 GAAAAAAA-AAA-AA
* *
1125156 GAAAAATGAAAAAT
1 GAAAAA-AAAAAAA
* **
1125170 GAAATAATGAAAA
1 GAAAAAAAAAAAA
1125183 GAAAAAAAAAGAAA
1 GAAAAAAAAA-AAA
1125197 -AAAAAAAGAGAAAA
1 GAAAAAAA-A-AAAA
1125211 -AAAAAAAAAAAA
1 GAAAAAAAAAAAA
1125223 GAAAAAAAAAAAGA
1 GAAAAAAAAAAA-A
*
1125237 AAAAAGAAAAAAAA
1 GAAAA-AAAAAAAA
*
1125251 AAAAAAAGAAAAAA
1 GAAAAAA-AAAAAA
1125265 GAAAAAAGAAAAAA
1 GAAAAAA-AAAAAA
1125279 G-AAAAAAAAAAA
1 GAAAAAAAAAAAA
* *
1125291 GAAAAAAGAAAAT
1 GAAAAAAAAAAAA
1125304 GAAAAAAA
1 GAAAAAAA
1125312 TAAATGAGGG
Statistics
Matches: 152, Mismatches: 19, Indels: 25
0.78 0.10 0.13
Matches are distributed among these distances:
12 14 0.09
13 65 0.43
14 54 0.36
15 18 0.12
16 1 0.01
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:1125195 original size:37 final size:33
Alignment explanation
Indices: 1125116--1125311 Score: 196
Period size: 30 Copynumber: 6.1 Consensus size: 33
1125106 ATTTCGCCTG
* *
1125116 AAAAAAAATAAAAAG-AAAAA-AAAGAGAAAAA
1 AAAAAAAAGAAAAAGAAAAAAGAAAAAGAAAAA
* *
1125147 AAGAAAGAAGAAAAATGAAAAATGAAATAATGAAAAGA
1 AA-AAAAAAGAAAAA-GAAAAAAGAAA-AA-GAAAA-A
*
1125185 AAAAAAAAG-AAAA-AAAAAAGAGAAA-AAAAA
1 AAAAAAAAGAAAAAGAAAAAAGAAAAAGAAAAA
*
1125215 AAAAAAAAGAAAAA-AAAAAAG-AAAA-AAGAA
1 AAAAAAAAGAAAAAGAAAAAAGAAAAAGAAAAA
1125245 AAAAAAAA-AAAAAGAAAAAAGAAAAAAGAAAAA
1 AAAAAAAAGAAAAAGAAAAAAG-AAAAAGAAAAA
* *
1125278 AGAAAAAA-AAAAAGAAAAAAGAAAATGAAAAA
1 AAAAAAAAGAAAAAGAAAAAAGAAAAAGAAAAA
1125310 AA
1 AA
1125312 TAAATGAGGG
Statistics
Matches: 140, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
29 5 0.04
30 32 0.23
31 17 0.12
32 25 0.18
33 27 0.19
34 12 0.09
35 3 0.02
36 5 0.04
37 11 0.08
38 3 0.02
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (33 bp):
AAAAAAAAGAAAAAGAAAAAAGAAAAAGAAAAA
Found at i:1125309 original size:7 final size:7
Alignment explanation
Indices: 1125115--1125302 Score: 170
Period size: 7 Copynumber: 26.7 Consensus size: 7
1125105 TATTTCGCCT
1125115 GAAAAAA
1 GAAAAAA
*
1125122 AATAAAAA
1 GA-AAAAA
1125130 GAAAAAA
1 GAAAAAA
* *
1125137 -AAGAGA
1 GAAAAAA
1125143 -AAAAAA
1 GAAAAAA
*
1125149 GAAAGAA
1 GAAAAAA
*
1125156 GAAAAAT
1 GAAAAAA
*
1125163 GAAAAAT
1 GAAAAAA
*
1125170 GAAATAAT
1 GAAA-AAA
1125178 GAAAAGAA
1 GAAAA-AA
*
1125186 AAAAAAA
1 GAAAAAA
1125193 GAAAAAA
1 GAAAAAA
*
1125200 -AAAAGA
1 GAAAAAA
1125206 GAAAAAA
1 GAAAAAA
*
1125213 AAAAAAA
1 GAAAAAA
*
1125220 AAAGAAAA
1 GAA-AAAA
*
1125228 AAAAAAA
1 GAAAAAA
1125235 GAAAAAA
1 GAAAAAA
1125242 GAAAAAAAA
1 G--AAAAAA
*
1125251 AAAAAAA
1 GAAAAAA
1125258 GAAAAAA
1 GAAAAAA
1125265 GAAAAAA
1 GAAAAAA
1125272 GAAAAAA
1 GAAAAAA
1125279 G-AAAAA
1 GAAAAAA
1125285 -AAAAAA
1 GAAAAAA
1125291 GAAAAAA
1 GAAAAAA
1125298 GAAAA
1 GAAAA
1125303 TGAAAAAAAT
Statistics
Matches: 153, Mismatches: 18, Indels: 20
0.80 0.09 0.10
Matches are distributed among these distances:
6 23 0.15
7 99 0.65
8 25 0.16
9 6 0.04
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (7 bp):
GAAAAAA
Found at i:1125311 original size:1 final size:1
Alignment explanation
Indices: 1125179--1125302 Score: 131
Period size: 1 Copynumber: 124.0 Consensus size: 1
1125169 TGAAATAATG
* * * * * * *
1125179 AAAAGAAAAAAAAAGAAAAAAAAAAGAGAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
1125244 AAAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAAAGAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1125303 TGAAAAAAAT
Statistics
Matches: 97, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 97 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:1126635 original size:37 final size:37
Alignment explanation
Indices: 1126589--1126661 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
1126579 TCGAAATAGG
* * *
1126589 TCAATCTTAAGCTTTCACGAAATAGTAGTGAAGCAAT
1 TCAAACTTAAGCCTTCACGAAAGAGTAGTGAAGCAAT
*
1126626 TCAAACTTAAGCCTTCACGGAAGAGTAGTGAAGCAA
1 TCAAACTTAAGCCTTCACGAAAGAGTAGTGAAGCAA
1126662 ACTCATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (37 bp):
TCAAACTTAAGCCTTCACGAAAGAGTAGTGAAGCAAT
Found at i:1126744 original size:55 final size:54
Alignment explanation
Indices: 1126680--1126946 Score: 277
Period size: 55 Copynumber: 4.9 Consensus size: 54
1126670 TATGAAGATT
* * * * * *
1126680 GAGTTCTATACTCTCTGAAGGAATAAAGAGCGGATCTGTTTGTTGAAGATTGTTT
1 GAGTTCTATACTCCCTGAACGAATAGAGAGCGGACCCGTTT-TTGAAGATTGTTC
* **
1126735 GAGTTCTATACTCTCTGATGGAATAGAGAGCGGACCCGTTTTATGAAGATTGTTC
1 GAGTTCTATACTCCCTGAACGAATAGAGAGCGGACCCGTTTT-TGAAGATTGTTC
*
1126790 GAGTTCTATACTCCCTGAACGAATAGGGAGCGGACCCGTTTATTGAAGATTGTTC
1 GAGTTCTATACTCCCTGAACGAATAGAGAGCGGACCCGTTT-TTGAAGATTGTTC
* * * *
1126845 GAG-TCTTATACTCCCTGAACGAATAGGGAGCAGACACATTTTATGAAGATTGTTC
1 GAGTTC-TATACTCCCTGAACGAATAGAGAGCGGACCCGTTTT-TGAAGATTGTTC
* * * * * *
1126900 GAG-TCTTATACTTCCTGAAGGAGTAGGGAGCGGGCTCGTTATTTGAA
1 GAGTTC-TATACTCCCTGAACGAATAGAGAGCGGACCCGTT-TTTGAA
1126947 TATTTTTCAA
Statistics
Matches: 188, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
54 4 0.02
55 181 0.96
56 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (54 bp):
GAGTTCTATACTCCCTGAACGAATAGAGAGCGGACCCGTTTTTGAAGATTGTTC
Found at i:1126821 original size:110 final size:110
Alignment explanation
Indices: 1126665--1126932 Score: 323
Period size: 110 Copynumber: 2.5 Consensus size: 110
1126655 GAAGCAAACT
* ** * * *
1126665 CATTTTATGAAGA---TT-GAGTTCTATACTCTCTGAAGGAATAAAGAGCGGATCTGTTTGTTGA
1 CATTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACCCGTTTATTGA
* * ** * *
1126726 AGATTGTTTGAGT-TCTATACTCTCTGATGGAATAGAGAGCGGACC
66 AGATTGTTCGAGTCT-TATACTCCCTGAACGAATAGAGAGCAGACA
* *
1126771 CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAACGAATAGGGAGCGGACCCGTTTATTGA
1 CATTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACCCGTTTATTGA
*
1126836 AGATTGTTCGAGTCTTATACTCCCTGAACGAATAGGGAGCAGACA
66 AGATTGTTCGAGTCTTATACTCCCTGAACGAATAGAGAGCAGACA
* *
1126881 CATTTTATGAAGATTGTTCGAG-TCTTATACTTCCTGAAGGAGTAGGGAGCGG
1 CATTTTATGAAGATTGTTCGAGTTC-TATACTCCCTGAAGGAATAGGGAGCGG
1126933 GCTCGTTATT
Statistics
Matches: 137, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
106 12 0.09
109 4 0.03
110 120 0.88
111 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (110 bp):
CATTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACCCGTTTATTGA
AGATTGTTCGAGTCTTATACTCCCTGAACGAATAGAGAGCAGACA
Found at i:1128589 original size:6 final size:6
Alignment explanation
Indices: 1128578--1128626 Score: 98
Period size: 6 Copynumber: 8.2 Consensus size: 6
1128568 GACACGTATT
1128578 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1128626 A
1 A
1128627 GCCGAGCCGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.35, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:1128695 original size:5 final size:5
Alignment explanation
Indices: 1128624--1128692 Score: 111
Period size: 5 Copynumber: 13.8 Consensus size: 5
1128614 ACCACGACCA
*
1128624 CGAGC CGAGC CGAGC CGAGC CGAGC CGTGC CGAGC CGAGC CGAGC CGAGC
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
* *
1128674 CGAGC CGAGA CGAGA CGAG
1 CGAGC CGAGC CGAGC CGAG
1128693 ACGGACGGCG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.22, C:0.36, G:0.41, T:0.01
Consensus pattern (5 bp):
CGAGC
Found at i:1129501 original size:15 final size:15
Alignment explanation
Indices: 1129481--1129510 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1129471 TTGTTTTGGC
1129481 CATATAGGTTATCAA
1 CATATAGGTTATCAA
*
1129496 CATATAGTTTATCAA
1 CATATAGGTTATCAA
1129511 GATGGAGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (15 bp):
CATATAGGTTATCAA
Found at i:1129662 original size:23 final size:23
Alignment explanation
Indices: 1129628--1129673 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1129618 TTTAAAGACT
1129628 TAAATTGCTAATATATCAAACTA
1 TAAATTGCTAATATATCAAACTA
*
1129651 TAAATTGTTAATATATCAAACTA
1 TAAATTGCTAATATATCAAACTA
1129674 CATCATCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (23 bp):
TAAATTGCTAATATATCAAACTA
Found at i:1133611 original size:2 final size:2
Alignment explanation
Indices: 1133604--1133636 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1133594 ATAATTACGG
1133604 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1133637 ATTATGTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1134444 original size:3 final size:3
Alignment explanation
Indices: 1134430--1134467 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
1134420 ATGTTAACGA
*
1134430 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1134468 CCACTGCCTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:1135062 original size:3 final size:3
Alignment explanation
Indices: 1135045--1135136 Score: 87
Period size: 3 Copynumber: 30.0 Consensus size: 3
1135035 TTTTATTTAT
* *
1135045 TTA TTCA TT- TTA TTA TTA TTA TTA ATA TTA TTA TAA TTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
1135090 TTA TAA TAA TAA TTA TTA TTA TTA ATA TATA TTA TTTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA TTA TTA
1135137 CAAACAGGCC
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
2 2 0.03
3 64 0.85
4 9 0.12
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:1137295 original size:18 final size:18
Alignment explanation
Indices: 1137254--1137296 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
1137244 AATTTTTATA
1137254 TTTATTTATTATTTTCAT
1 TTTATTTATTATTTTCAT
**
1137272 AATATTTA-TATGTTTCAT
1 TTTATTTATTAT-TTTCAT
1137290 TTTATTT
1 TTTATTT
1137297 TATTTGCAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATTTATTATTTTCAT
Found at i:1137311 original size:15 final size:13
Alignment explanation
Indices: 1137291--1137328 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
1137281 ATGTTTCATT
1137291 TTATTTTATTTGCAA
1 TTATTTTATTT-C-A
1137306 TTATTTTATTTCA
1 TTATTTTATTTCA
1137319 TTA-TTTATTT
1 TTATTTTATTT
1137329 TTCTGTCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 1 0.04
15 11 0.48
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (13 bp):
TTATTTTATTTCA
Found at i:1142207 original size:20 final size:20
Alignment explanation
Indices: 1142182--1142224 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
1142172 ACTGTTTGGC
1142182 ATTCAAAAGGGTGGTTCAAA
1 ATTCAAAAGGGTGGTTCAAA
1142202 ATTCAAAAGGGTGGTTCAAA
1 ATTCAAAAGGGTGGTTCAAA
1142222 ATT
1 ATT
1142225 TGATCAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (20 bp):
ATTCAAAAGGGTGGTTCAAA
Found at i:1149249 original size:83 final size:83
Alignment explanation
Indices: 1149106--1150145 Score: 1658
Period size: 83 Copynumber: 12.5 Consensus size: 83
1149096 CAATGGGCTC
1149106 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
* * *
1149171 TGGAAGATGAATTTGCTA
66 TAGAAGATGAATGTGTTA
*
1149189 ATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
* * *
1149254 TGGAAGATGAATTTGCTA
66 TAGAAGATGAATGTGTTA
1149272 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
* *
1149337 TGGAAGATGAAAT-TGCTA
66 TAGAAGATG-AATGTGTTA
*
1149355 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAGTTTAGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
* *
1149420 TGGAAGATGAAAT-TGCTA
66 TAGAAGATG-AATGTGTTA
*
1149438 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
1149503 TAGAAGATGAATGTGTTA
66 TAGAAGATGAATGTGTTA
*
1149521 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
1149586 TAGAAGATGAATGTGTTA
66 TAGAAGATGAATGTGTTA
* * *
1149604 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTTGGCAGAACAAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
* *
1149669 TAGAAGATAAATGTGTTC
66 TAGAAGATGAATGTGTTA
* * * *
1149687 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTAGTTTGGCAGAACAAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
1149752 TAGAAGATGAATGTGTTA
66 TAGAAGATGAATGTGTTA
* * *
1149770 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTTGGCAGAACAAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
* *
1149835 TAGAAGATAAATGTGTTC
66 TAGAAGATGAATGTGTTA
*
1149853 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGAG-AGAACAAATCATTGAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT-AGCAGAACCAATCATTGAAT
* *
1149917 TTAGAAGATAAATGTGTTC
65 TTAGAAGATGAATGTGTTA
* *
1149936 ATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGAG-AGAACAAATCATTGAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT-AGCAGAACCAATCATTGAAT
* *
1150000 TTAGAAGATAAATGTGTTC
65 TTAGAAGATGAATGTGTTA
*
1150019 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAG-ACCAAATCATTGAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACC-AATCATTGAAT
* *
1150083 GTAGAAGATGAATGTGTCA
65 TTAGAAGATGAATGTGTTA
1150102 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1150146 GGTAAGAACT
Statistics
Matches: 925, Mismatches: 27, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
82 6 0.01
83 915 0.99
84 4 0.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (83 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGAACCAATCATTGAATT
TAGAAGATGAATGTGTTA
Found at i:1151169 original size:112 final size:112
Alignment explanation
Indices: 1150874--1151655 Score: 1175
Period size: 112 Copynumber: 7.0 Consensus size: 112
1150864 TCAAAGATTT
1150874 AAATCCATCA-TTCGATGGATCAGCATTTT-CAGTTAGAGTTCATAATGAGAAGAACTCATCTGA
1 AAATCCATCACTT-GATGGATCAGC-TTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGA
* ** * *
1150937 AGAA-GAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATTTTTTTCTT
64 AGAAGGAAGAA-AAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* *
1150986 AAATTCATCCCTTGATGGATCAGCATTTT-CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATGGATCAGC-TTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAA
*
1151050 GAA-GAAGAAAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
65 GAAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
*
1151097 AAATCCATCACTTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAG
*
1151162 AAGGAAGAAAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
*
1151209 AAATCCATCACTTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAG
1151274 AAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
** *
1151321 AAATCCATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAG
1151386 AAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* ** *
1151433 AAATCCATCACTTGATGGATCAGATTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAG
* * *
1151498 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTCTTAC-C
66 AAGGAAGAA-AAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * * *
1151545 TGAATTCATCAATTGATGGATTATCTTTTCCAG--AGAAGTTCATAATGAGAAGAACTCATCTGA
1 -AAATCCATCACTTGATGGATCAGCTTTTCCAGTTAG-AGTTCATAATGAGAAGAACTCATCTGA
* * *
1151608 AGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTTGC
64 AGAAGGAAGAA-AAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
1151656 ATAATTCTAT
Statistics
Matches: 631, Mismatches: 33, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
110 4 0.01
111 92 0.15
112 474 0.75
113 61 0.10
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (112 bp):
AAATCCATCACTTGATGGATCAGCTTTTCCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:1151892 original size:3 final size:3
Alignment explanation
Indices: 1151875--1151966 Score: 96
Period size: 3 Copynumber: 30.0 Consensus size: 3
1151865 TTTTATTTAT
* *
1151875 TTA TTCA TT- TTA TTA TTA TTA TTA ATA TTA TTA TAA TTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
1151920 TTA TAA TAA TTA TTA TTA TTA TTA ATA TATA TTA TTTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA TTA TTA
1151967 CAAACAGGCC
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
2 2 0.03
3 64 0.85
4 9 0.12
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Done.