Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007777.1 Hibiscus syriacus cultivar Beakdansim tig00110059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1720799
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 10
Found at i:651140 original size:228 final size:226
Alignment explanation
Indices: 650622--651546 Score: 1338
Period size: 225 Copynumber: 4.1 Consensus size: 226
650612 ATGTACACGG
* * *
650622 TAATATGTTGATAAAGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCAGATTTCT
1 TAATATGTT-ATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCT
* * * *
650687 AAGGCTCTATCAGCTTAAACTTTGGTAACATTTTCGGCATTACCTAGTATGTTGATAATACTGAT
65 AAGGCTCCATCAGCTTAAAATTTGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGAT
* * * * *
650752 AACAAATTAAGTAATTAACATATTTTATTATCGCCAGATTTCTAA-GTCCCAACAGCTTTAAAAA
130 AACAAATTAAGTAATTAACATATTTTGTTATCGTCAGATTTCTAAGGCCCCATCAACTTTAAAAA
*
650816 GGCGCTACCTATCACGTTACATAAGCGCTACC
195 GGCGCTACCTATTACGTTACATAAGCGCTACC
* ** *
650848 TAATATGTTGTTATGGTTGATAACAAATCAAGTAATTAATTGGTTATGTTATCATCGGATTTCTA
1 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTA
* * *
650913 AGGCTCCATCAGCTTAAAATTTGGTAATATTTTAGGCGTTACCTAATATGTTGATAATAATGATA
66 AGGCTCCATCAGCTTAAAATTTGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGATA
*
650978 ACAAATTAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAGGCCCCCATCAACTTTAAAAA
131 ACAAATTAAGTAATTAACATATTTTGTTATCGTCAGATTTCTAAGG-CCCCATCAACTTT-AAAA
* *
651043 AGGCGCTACCTATTACGTTACGTAAGCGTTACC
194 AGGCGCTACCTATTACGTTACATAAGCGCTACC
*
651076 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATTGTCGGATTTCTA
1 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTA
* ** *
651141 AGGCTCCATCAGCTTAAAATTCGGTAACATTTTAGGTGTTATCTAATATGTTGATAATACTGATA
66 AGGCTCCATCAGCTTAAAATTTGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGATA
* *
651206 ACAAATTAAGTAATTAACCTATTTTGTTATCGTC-GAATTTCTAAGGCCCCATCAGCTTTAAAAA
131 ACAAATTAAGTAATTAACATATTTTGTTATCGTCAG-ATTTCTAAGGCCCCATCAACTTTAAAAA
* * * *
651270 GGTGTTACATATTACGTTACATAAGCCCTACC
195 GGCGCTACCTATTACGTTACATAAGCGCTACC
* *
651302 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAAACGGTTATGTTATC-TCGGGTTTCTA
1 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTA
* * * *
651366 AGGTTCCATCAACTTATAATTTGGTAACATTTTAGGCATTACCTAATATATTGATAATACTGATA
66 AGGCTCCATCAGCTTAAAATTTGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGATA
* * ** *
651431 ACAAATTAAGTAATTAACATGTTTTGTTATCGTCGGATTTCTAAGGCCCCAT-AA-GATGAAAAG
131 ACAAATTAAGTAATTAACATATTTTGTTATCGTCAGATTTCTAAGGCCCCATCAACTTTAAAAAG
* * * *
651494 GCACTACCTATTATGTTACATAAGTGTTACC
196 GCGCTACCTATTACGTTACATAAGCGCTACC
651525 TAATATGTTATTATGGTTGATA
1 TAATATGTTATTATGGTTGATA
651547 TTGTTTCCAG
Statistics
Matches: 629, Mismatches: 65, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
223 51 0.08
224 1 0.00
225 263 0.42
226 93 0.15
227 23 0.04
228 198 0.31
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (226 bp):
TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCGGATTTCTA
AGGCTCCATCAGCTTAAAATTTGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGATA
ACAAATTAAGTAATTAACATATTTTGTTATCGTCAGATTTCTAAGGCCCCATCAACTTTAAAAAG
GCGCTACCTATTACGTTACATAAGCGCTACC
Found at i:651472 original size:453 final size:449
Alignment explanation
Indices: 650622--651546 Score: 1386
Period size: 453 Copynumber: 2.0 Consensus size: 449
650612 ATGTACACGG
* *
650622 TAATATGTTGATAAAGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCAGATTTCT
1 TAATATGTT-ATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCAGATTTCT
* * * * *
650687 AAGGCTCTATCAGCTTAAACTTTGGTAACATTTTCGGCATTACCTAGTATGTTGATAATACTGAT
65 AAGGCTCCATCAGCTTAAAATTCGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGAT
*
650752 AACAAATTAAGTAATTAACATATTTTATTATCGCCAGATTTCTAAGTCCCAACAGCTTTAAAAAG
130 AACAAATTAAGTAATTAACATATTTTATTATCGCCAGATTTCTAAGCCCCAACAGCTTTAAAAAG
* * *
650817 GCGCTACCTATCACGTTACATAAGCGCTACCTAATATGTTGTTATGGTTGATAACAAATCAAGTA
195 GCGCTACATATCACGTTACATAAGCCCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTA
** * *
650882 ATTAATTGGTTATGTTATCATCGGATTTCTAAGGCTCCATCAGCTTAAAATTTGGTAATATTTTA
260 ATTAAACGGTTATGTTATCATCGGATTTCTAAGGCTCCATCAACTTAAAATTTGGTAACATTTTA
* * *
650947 GGCGTTACCTAATATGTTGATAATAATGATAACAAATTAAGTAATTAACCTATTTTGTTATCGTC
325 GGCATTACCTAATATATTGATAATAATGATAACAAATTAAGTAATTAACATATTTTGTTATCGTC
** * *
651012 AGATTTCTAAGGCCCCCATCAACTTTAAAAAAGGCGCTACCTATTACGTTACGTAAGCGTTACC
390 AGATTTCTAAGG-CCCCAT-AA-GAT-AAAAAGGCACTACCTATTACGTTACATAAGCGTTACC
* *
651076 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATTGTCGGATTTCTA
1 TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCAGATTTCTA
** *
651141 AGGCTCCATCAGCTTAAAATTCGGTAACATTTTAGGTGTTATCTAATATGTTGATAATACTGATA
66 AGGCTCCATCAGCTTAAAATTCGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGATA
* * * *
651206 ACAAATTAAGTAATTAACCTATTTTGTTATCGTC-GAATTTCTAAGGCCCCATCAGCTTTAAAAA
131 ACAAATTAAGTAATTAACATATTTTATTATCGCCAG-ATTTCTAA-GCCCCAACAGCTTTAAAAA
* * *
651270 GGTGTTACATATTACGTTACATAAGCCCTACCTAATATGTTATTATGGTTGATAACAAATCAAGT
194 GGCGCTACATATCACGTTACATAAGCCCTACCTAATATGTTATTATGGTTGATAACAAATCAAGT
* * *
651335 AATTAAACGGTTATGTTATC-TCGGGTTTCTAAGGTTCCATCAACTTATAATTTGGTAACATTTT
259 AATTAAACGGTTATGTTATCATCGGATTTCTAAGGCTCCATCAACTTAAAATTTGGTAACATTTT
* *
651399 AGGCATTACCTAATATATTGATAATACTGATAACAAATTAAGTAATTAACATGTTTTGTTATCGT
324 AGGCATTACCTAATATATTGATAATAATGATAACAAATTAAGTAATTAACATATTTTGTTATCGT
* * * *
651464 CGGATTTCTAAGGCCCCATAAGATGAAAAGGCACTACCTATTATGTTACATAAGTGTTACC
389 CAGATTTCTAAGGCCCCATAAGATAAAAAGGCACTACCTATTACGTTACATAAGCGTTACC
651525 TAATATGTTATTATGGTTGATA
1 TAATATGTTATTATGGTTGATA
651547 TTGTTTCCAG
Statistics
Matches: 426, Mismatches: 43, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
449 54 0.13
450 1 0.00
451 2 0.00
452 7 0.02
453 259 0.61
454 103 0.24
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (449 bp):
TAATATGTTATTATGGTTGATAACAAATCAAGTAATTAACCGGTTATGTTATCGTCAGATTTCTA
AGGCTCCATCAGCTTAAAATTCGGTAACATTTTAGGCATTACCTAATATGTTGATAATACTGATA
ACAAATTAAGTAATTAACATATTTTATTATCGCCAGATTTCTAAGCCCCAACAGCTTTAAAAAGG
CGCTACATATCACGTTACATAAGCCCTACCTAATATGTTATTATGGTTGATAACAAATCAAGTAA
TTAAACGGTTATGTTATCATCGGATTTCTAAGGCTCCATCAACTTAAAATTTGGTAACATTTTAG
GCATTACCTAATATATTGATAATAATGATAACAAATTAAGTAATTAACATATTTTGTTATCGTCA
GATTTCTAAGGCCCCATAAGATAAAAAGGCACTACCTATTACGTTACATAAGCGTTACC
Found at i:653826 original size:13 final size:13
Alignment explanation
Indices: 653792--653827 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
653782 ACATTACTGT
*
653792 TTTGAACTATCTG
1 TTTGAACTGTCTG
653805 TTTGAACTGTCTG
1 TTTGAACTGTCTG
653818 TTTGAACTGT
1 TTTGAACTGT
653828 TTTGAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.47
Consensus pattern (13 bp):
TTTGAACTGTCTG
Found at i:656894 original size:18 final size:18
Alignment explanation
Indices: 656871--656905 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
656861 TTATAATATA
656871 TTTAAAGAT-TTTTTAATC
1 TTTAAA-ATATTTTTAATC
656889 TTTAAAATATTTTTAAT
1 TTTAAAATATTTTTAAT
656906 TTTTGTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAAAATATTTTTAATC
Found at i:666532 original size:17 final size:17
Alignment explanation
Indices: 666508--666556 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
666498 AAGTTTTGGT
666508 TAAAAAAATTAAATAAA
1 TAAAAAAATTAAATAAA
* *
666525 -AGAAAAAAATAATTAAA
1 TA-AAAAAATTAAATAAA
*
666542 TAAACAAATTAAATA
1 TAAAAAAATTAAATA
666557 GATTAAGATA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
16 1 0.04
17 23 0.92
18 1 0.04
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
TAAAAAAATTAAATAAA
Found at i:667229 original size:19 final size:19
Alignment explanation
Indices: 667173--667234 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
667163 CTATTTAAAC
**
667173 TAAAATACCTAAAAAATAAT
1 TAAAATA-CTAAAACCTAAT
* * *
667193 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
*
667213 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
667232 TAA
1 TAA
667235 TAAAATATAA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 18 0.56
20 9 0.28
21 5 0.16
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:667343 original size:72 final size:72
Alignment explanation
Indices: 667182--667353 Score: 213
Period size: 72 Copynumber: 2.3 Consensus size: 72
667172 CTAAAATACC
* * * *
667182 TAAAAAATAATATAATATTCTAAATCCTAATTAAAATACTAAAACCTATTTAATAAAATATAAAG
1 TAAAATATAAAATAATATCCTAAATCCTAATTAAAATACTAAAACCTATTTAATAAAATACAAAG
667247 ATAAAGA
66 ATAAAGA
*
667254 TAAAATATAAAATAATATCCTAAA-CTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACA
1 TAAAATATAAAATAATATCCTAAATCCTAATTAAAATACT-AAAACCTATTT-AA-TAAAATACA
667318 AAGATAAA-A
63 AAGATAAAGA
* * *
667327 TATAATGTTTAAAATATTATCCTAAAT
1 TA-AA-ATATAAAATAATATCCTAAAT
667354 TTGAGTTTAA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
71 14 0.16
72 32 0.37
73 5 0.06
74 18 0.21
75 17 0.20
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.31
Consensus pattern (72 bp):
TAAAATATAAAATAATATCCTAAATCCTAATTAAAATACTAAAACCTATTTAATAAAATACAAAG
ATAAAGA
Found at i:669141 original size:8 final size:8
Alignment explanation
Indices: 669128--669167 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
669118 TAAAGTTCGC
669128 TAAAAAAA
1 TAAAAAAA
669136 TAAAAAAA
1 TAAAAAAA
669144 TAAAACAAA
1 TAAAA-AAA
669153 -AATAAAAA
1 TAA-AAAAA
669161 TAAAAAA
1 TAAAAAA
669168 TAGAAACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (8 bp):
TAAAAAAA
Found at i:669160 original size:12 final size:12
Alignment explanation
Indices: 669139--669181 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
669129 AAAAAAATAA
669139 AAAAAT-AAAAC
1 AAAAATAAAAAC
*
669150 AAAAATAAAAATA
1 AAAAATAAAAA-C
*
669163 AAAAATAGAAAC
1 AAAAATAAAAAC
669175 AAAAATA
1 AAAAATA
669182 TAACGAAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 6 0.22
12 11 0.41
13 10 0.37
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAAATAAAAAC
Found at i:669165 original size:25 final size:25
Alignment explanation
Indices: 669131--669181 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
669121 AGTTCGCTAA
669131 AAAAATAAAAAAATA-AAACAAAAAT
1 AAAAAT-AAAAAATAGAAACAAAAAT
669156 AAAAATAAAAAATAGAAACAAAAAT
1 AAAAATAAAAAATAGAAACAAAAAT
669181 A
1 A
669182 TAACGAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (25 bp):
AAAAATAAAAAATAGAAACAAAAAT
Found at i:669167 original size:19 final size:20
Alignment explanation
Indices: 669131--669181 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
669121 AGTTCGCTAA
669131 AAAAATAAAAA-AATAAAAC
1 AAAAATAAAAATAATAAAAC
*
669150 AAAAATAAAAATAA-AAAAT
1 AAAAATAAAAATAATAAAAC
* *
669169 AGAAACAAAAATA
1 AAAAATAAAAATA
669182 TAACGAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 26 0.93
20 2 0.07
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (20 bp):
AAAAATAAAAATAATAAAAC
Found at i:675081 original size:9 final size:9
Alignment explanation
Indices: 675069--675094 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
675059 AGTTTTGGTT
675069 AAAATAAAA
1 AAAATAAAA
675078 AAAATAAAA
1 AAAATAAAA
675087 AAAATAAA
1 AAAATAAA
675095 CAAATAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAA
Found at i:675111 original size:17 final size:17
Alignment explanation
Indices: 675069--675102 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
675059 AGTTTTGGTT
*
675069 AAAATAAAAAAAATAAAA
1 AAAAT-AAACAAATAAAA
675087 AAAATAAACAAATAAA
1 AAAATAAACAAATAAA
675103 CAAATTAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAATAAACAAATAAAA
Found at i:675888 original size:76 final size:75
Alignment explanation
Indices: 675750--675962 Score: 363
Period size: 76 Copynumber: 2.8 Consensus size: 75
675740 TAAAAATAAT
* * *
675750 ATAATATTCTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAGATAAAGATA
1 ATAATATCCTAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAGATAAAGATA
675815 AAATATAAAA
66 AAATATAAAA
*
675825 TTAATATCCTAAAACTTAATTAAAATACTAAAACCCTATTTAAACTAAAATACAAAGATAAAGAT
1 ATAATATCCTAAAACTTAATTAAAATACTAAAA-CCTATTTAAACTAAAATACAAAGATAAAGAT
675890 AAAATATAAAA
65 AAAATATAAAA
*
675901 ATAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAATGATAAA
1 ATAATATCCTAAAACTTAATTAAAATACT-AAAACCTATTTAAACTAAAATACAAAGATAAA
675963 ATATAATGTT
Statistics
Matches: 130, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
75 29 0.22
76 97 0.75
77 4 0.03
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (75 bp):
ATAATATCCTAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAGATAAAGATA
AAATATAAAA
Found at i:675978 original size:76 final size:75
Alignment explanation
Indices: 675750--675989 Score: 331
Period size: 76 Copynumber: 3.2 Consensus size: 75
675740 TAAAAATAAT
* * *
675750 ATAATATTCTAAATCCTAATTAAAATACT-AAAACCTATTTAAACTAAAATACAAAGATAAAGAT
1 ATAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAAAGAT
* *
675814 AAAATATAAA
66 AAATTTTAAA
*
675824 ATTAATATCCTAAAACTTAATTAAAATACTAAAACCCTATTTAAACTAAAATACAAAGATAAAGA
1 A-TAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAAAGA
* *
675889 TAAAATATAAAA
65 T-AAATTTTAAA
*
675901 ATAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAATGATAAA-AT
1 ATAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAAAGAT
675965 ATAATGTTTAAA
66 A-AAT-TTTAAA
* *
675977 ATATTATACTAAA
1 ATAATATCCTAAA
675990 TCTGAGTTTA
Statistics
Matches: 147, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
74 2 0.01
75 30 0.20
76 108 0.73
77 7 0.05
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.30
Consensus pattern (75 bp):
ATAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAAAGAT
AAATTTTAAA
Found at i:684880 original size:20 final size:20
Alignment explanation
Indices: 684842--684881 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
684832 CCAAGATGAG
*
684842 TATCGATATCCTCTGCTTCA
1 TATCGATATCCTCTACTTCA
684862 TATCGATACTCC-CTACTTCA
1 TATCGATA-TCCTCTACTTCA
684882 AAAGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.38
Consensus pattern (20 bp):
TATCGATATCCTCTACTTCA
Found at i:686623 original size:16 final size:16
Alignment explanation
Indices: 686602--686633 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
686592 ACTATTCACA
*
686602 TGAATAGTGAATTTTG
1 TGAATAGTGAAATTTG
686618 TGAATAGTGAAATTTG
1 TGAATAGTGAAATTTG
686634 GTCGGCGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (16 bp):
TGAATAGTGAAATTTG
Found at i:688140 original size:23 final size:22
Alignment explanation
Indices: 688114--688177 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
688104 CATCTCATAT
688114 AATTGCACCTAAGTGCCACGAAG
1 AATTGCACCT-AGTGCCACGAAG
* * *
688137 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGAAG
688160 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
688178 TATAATAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.27, T:0.19
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGAAG
Found at i:688892 original size:64 final size:62
Alignment explanation
Indices: 688769--688926 Score: 192
Period size: 64 Copynumber: 2.5 Consensus size: 62
688759 TATTGGAGGT
* *
688769 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTT-AATGGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAAT--G
*
688833 G
62 A
* *
688834 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTCTTTTTAAATTA
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAATGA
* *
688897 ATGCATCGATGCACTACATGTGCATCGATG
1 ATGCATCGATGCACT-CCTATGCATCGATG
688927 TACCTTAAAT
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
63 27 0.33
64 38 0.46
65 18 0.22
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (62 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAATGA
Found at i:695045 original size:23 final size:23
Alignment explanation
Indices: 695019--695071 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
695009 ATTGCATCTA
695019 AGTGCCACGTAGAATTACACCGG
1 AGTGCCACGTAGAATTACACCGG
* * *
695042 AGTGCCGCGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTACACCGG
695065 AGTGCCA
1 AGTGCCA
695072 TATAATAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.19
Consensus pattern (23 bp):
AGTGCCACGTAGAATTACACCGG
Found at i:695761 original size:64 final size:67
Alignment explanation
Indices: 695649--695776 Score: 192
Period size: 64 Copynumber: 2.0 Consensus size: 67
695639 ATTTTCATCT
695649 TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCGATGCATAAATCATATTCGATGTTTG
1 TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCGATGCATAAATCATATTCGATGTTTG
695714 TA
66 TA
* * *
695716 TTTAATGG-GG-ATGCATCGATGCACT-C-CTTATGCATCGATGTATAAATCCTATTCGATGTTT
1 TTTAATGGAGGTATGCATCGATGCACTACAC-CATGCATCGATGCATAAATCATATTCGATGTTT
695777 TCTTTTTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
63 1 0.02
64 31 0.54
65 15 0.26
66 2 0.04
67 8 0.14
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (67 bp):
TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCGATGCATAAATCATATTCGATGTTTG
TA
Found at i:695797 original size:64 final size:62
Alignment explanation
Indices: 695664--695821 Score: 156
Period size: 64 Copynumber: 2.5 Consensus size: 62
695654 TGGAGGTATG
* * * *
695664 CATCGATGCACTACACCATGCATCGATGCATAAATCATATTCGATGTTTGTATTTAATGGGGATG
1 CATCGATGCACT-C-CTATGCATCGATGCATAAATCATATTCGATGTTTCTATTTAAT-GGAATA
* * * *
695729 CATCGATGCACTCCTTATGCATCGATGTATAAATCCTATTCGATGTTTTCTTTTTAAAT-TAATA
1 CATCGATGCACTCC-TATGCATCGATGCATAAATCATATTCGATG-TTTCTATTT-AATGGAATA
* *
695793 CATCGATGCACTGCATGTGCATCGATGCA
1 CATCGATGCACT-CCTATGCATCGATGCA
695822 CCTTAAACAA
Statistics
Matches: 78, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
63 1 0.01
64 54 0.69
65 20 0.26
66 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (62 bp):
CATCGATGCACTCCTATGCATCGATGCATAAATCATATTCGATGTTTCTATTTAATGGAATA
Found at i:700014 original size:13 final size:13
Alignment explanation
Indices: 699978--700021 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
699968 TTTAATATTT
*
699978 ATCGGGCCGGAT-
1 ATCGGGCCGGGTA
* *
699990 ATTGGGCTGGGTA
1 ATCGGGCCGGGTA
700003 ATCGGGCCGGGTA
1 ATCGGGCCGGGTA
700016 ATCGGG
1 ATCGGG
700022 GCGGAGATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.16, C:0.18, G:0.45, T:0.20
Consensus pattern (13 bp):
ATCGGGCCGGGTA
Found at i:701347 original size:17 final size:18
Alignment explanation
Indices: 701319--701353 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
701309 GGTTTCAAAG
701319 GTCAATCCATTGATCTAA
1 GTCAATCCATTGATCTAA
701337 GTCAA-CCATTGATCTAA
1 GTCAATCCATTGATCTAA
701354 CTCCCAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (18 bp):
GTCAATCCATTGATCTAA
Found at i:702193 original size:16 final size:16
Alignment explanation
Indices: 702172--702205 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
702162 ATCAAACAAA
*
702172 TAACCTATGAGTATTG
1 TAACCTATAAGTATTG
702188 TAACCTATAAGTATTG
1 TAACCTATAAGTATTG
702204 TA
1 TA
702206 GTTACTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (16 bp):
TAACCTATAAGTATTG
Found at i:709729 original size:24 final size:24
Alignment explanation
Indices: 709673--709746 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 24
709663 GAAATCAAAA
* * * *
709673 CATATATCAGAACAGAATCCAGAT
1 CATATATCATAACAAAATTCAGGT
* *
709697 CAGAAATCATAACAAAATTCAGGT
1 CATATATCATAACAAAATTCAGGT
*
709721 CATATATCATAACAAAATTCAAGT
1 CATATATCATAACAAAATTCAGGT
709745 CA
1 CA
709747 AAAATCAGAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (24 bp):
CATATATCATAACAAAATTCAGGT
Found at i:709753 original size:24 final size:24
Alignment explanation
Indices: 709700--709753 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
709690 TCCAGATCAG
* *
709700 AAATCATAACAAAATTCAGGTCAT
1 AAATCATAACAAAATTCAAGTCAA
*
709724 ATATCATAACAAAATTCAAGTCAA
1 AAATCATAACAAAATTCAAGTCAA
709748 AAATCA
1 AAATCA
709754 GATAAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.17, G:0.06, T:0.24
Consensus pattern (24 bp):
AAATCATAACAAAATTCAAGTCAA
Found at i:712269 original size:18 final size:18
Alignment explanation
Indices: 712246--712283 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
712236 ACGATCAACA
712246 GTCAACGGGTCGGGTCGG
1 GTCAACGGGTCGGGTCGG
712264 GTCAACGGGTCGGGTCGG
1 GTCAACGGGTCGGGTCGG
712282 GT
1 GT
712284 TGTGACCGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.50, T:0.18
Consensus pattern (18 bp):
GTCAACGGGTCGGGTCGG
Found at i:713729 original size:37 final size:37
Alignment explanation
Indices: 713671--713749 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
713661 GCGAAAACGA
*
713671 AATTCGCGTTGCGATAATTGTGTTTACCTATATCGAT
1 AATTAGCGTTGCGATAATTGTGTTTACCTATATCGAT
*
713708 AATTAGCGTTGCGATAGTTGTGTTTACCTATATCGAT
1 AATTAGCGTTGCGATAATTGTGTTTACCTATATCGAT
713745 AATTA
1 AATTA
713750 ATGTTGTGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (37 bp):
AATTAGCGTTGCGATAATTGTGTTTACCTATATCGAT
Found at i:714611 original size:29 final size:29
Alignment explanation
Indices: 714522--714599 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
714512 AATATAATAT
* *
714522 TATATTTTTAATATTATAATA-AA-ATAA
1 TATATTTTTATTATAATAATATAAGATAA
*
714549 TCA-A-TTTTATTATAATAATATAAGATAT
1 T-ATATTTTTATTATAATAATATAAGATAA
*
714577 TATATTTTTATTTTAATAATATA
1 TATATTTTTATTATAATAATATA
714600 TAATAAATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 14 0.33
27 5 0.12
28 6 0.14
29 17 0.40
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (29 bp):
TATATTTTTATTATAATAATATAAGATAA
Found at i:714702 original size:27 final size:27
Alignment explanation
Indices: 714622--714713 Score: 73
Period size: 27 Copynumber: 3.3 Consensus size: 27
714612 AATAAAATTT
*
714622 ATATTATTTAT-TAATTTCATATAAATA
1 ATATTATTTATAT-ATTTAATATAAATA
* *
714649 ATATTA-TTAAAT-TATTAATAATGAATA
1 ATATTATTTATATAT-TTAAT-ATAAATA
*
714676 ATTTTATTTATATATTTAATATTAATATA
1 ATATTATTTATATATTTAATA-TAA-ATA
*
714705 ATAATATTT
1 ATATTATTT
714714 TAATAAAGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
25 1 0.02
26 7 0.14
27 19 0.38
28 12 0.24
29 11 0.22
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (27 bp):
ATATTATTTATATATTTAATATAAATA
Found at i:714733 original size:23 final size:23
Alignment explanation
Indices: 714714--714758 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
714704 AATAATATTT
714714 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
714737 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
714759 ATAAAACAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:715065 original size:14 final size:14
Alignment explanation
Indices: 715031--715065 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
715021 AAACGTAATT
*
715031 CATTTTACGGAAAA
1 CATTTTCCGGAAAA
715045 CATTTTCCGGAAAA
1 CATTTTCCGGAAAA
715059 CATTTTC
1 CATTTTC
715066 AGTGAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (14 bp):
CATTTTCCGGAAAA
Found at i:715074 original size:14 final size:14
Alignment explanation
Indices: 715039--715072 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
715029 TTCATTTTAC
*
715039 GGAAAACATTTTCC
1 GGAAAACATTTTCA
715053 GGAAAACATTTTCA
1 GGAAAACATTTTCA
715067 GTGAAA
1 G-GAAA
715073 CAAACGGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (14 bp):
GGAAAACATTTTCA
Found at i:729127 original size:2 final size:2
Alignment explanation
Indices: 729120--729148 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
729110 GAACCTGATT
729120 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
729149 GTTTGAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:733582 original size:27 final size:27
Alignment explanation
Indices: 733536--733723 Score: 241
Period size: 27 Copynumber: 6.7 Consensus size: 27
733526 GTGGTGGCTA
* *
733536 AGCTGTTGCTGCCGCCGCTGAAGTTCC
1 AGCTGCTGCTGCTGCCGCTGAAGTTCC
* *
733563 AACTGCTGCTGCTGCTGCTGAAGTTCC
1 AGCTGCTGCTGCTGCCGCTGAAGTTCC
*
733590 AGCTGCTGTTGCTGTTGCCGCTGAAGTTCC
1 AGCTGC---TGCTGCTGCCGCTGAAGTTCC
*
733620 AGCTGCTGCTGCTGCTGCCGCTGTAGTTCC
1 A---GCTGCTGCTGCTGCCGCTGAAGTTCC
*
733650 AGCTGCTGCTGCTGCCGCTGTAGTTCC
1 AGCTGCTGCTGCTGCCGCTGAAGTTCC
*
733677 AGCTGCTGCTGCTGCCGCTGTAGTTCC
1 AGCTGCTGCTGCTGCCGCTGAAGTTCC
*
733704 AGCTGCTGCTGCTGCTGCTG
1 AGCTGCTGCTGCTGCCGCTG
733724 CTGCTGCCAC
Statistics
Matches: 145, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
27 100 0.69
30 40 0.28
33 5 0.03
ACGTcount: A:0.09, C:0.31, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCTGCTGCTGCTGCCGCTGAAGTTCC
Found at i:733626 original size:57 final size:57
Alignment explanation
Indices: 733537--733775 Score: 252
Period size: 57 Copynumber: 4.0 Consensus size: 57
733527 TGGTGGCTAA
* *
733537 GCTGTTGCTGCCGCCGCTGAAGTTCCAACTGCTGCTGCTGCTGCTGAAGTTCCAGCT
1 GCTGTTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCTGCTGCTGAAGTTCCAGCT
* *
733594 GCTGTTGCTGTTGCCGCTGAAGTTCCAGCTGCTGCTGCTGCTGCCGCTGTAGTTCCAGCT
1 GCTGTTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCTGCT---GCTGAAGTTCCAGCT
* * *
733654 GC---TGCTGCTGCCGCTGTAGTTCCAGCTGCTGCTGCTGCCGCTGTAGTTCCAGCT
1 GCTGTTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCTGCTGCTGAAGTTCCAGCT
* *
733708 GCTGCTGCTGCTGCTGCTGCTGCCACTTAAGTTCCAAG-TGCTGCTGCTGCTGCTGAAGTTCCAA
1 GCTG-T--TGCTGCTGC--C-G---CTGAAGTTCC-AGCTGCTGCTGCTGCTGCTGAAGTTCCAG
733772 CT
56 CT
733774 GC
1 GC
733776 CGCTCCTGTT
Statistics
Matches: 154, Mismatches: 12, Indels: 23
0.81 0.06 0.12
Matches are distributed among these distances:
54 17 0.11
57 73 0.47
60 25 0.16
62 1 0.01
63 1 0.01
66 35 0.23
67 2 0.01
ACGTcount: A:0.10, C:0.31, G:0.28, T:0.30
Consensus pattern (57 bp):
GCTGTTGCTGCTGCCGCTGAAGTTCCAGCTGCTGCTGCTGCTGCTGAAGTTCCAGCT
Found at i:733629 original size:3 final size:3
Alignment explanation
Indices: 733621--733730 Score: 64
Period size: 3 Copynumber: 36.7 Consensus size: 3
733611 TGAAGTTCCA
* * * * *
733621 GCT GCT GCT GCT GCT GCC GCT G-T AGTT CCA GCT GCT GCT GCT GCC
1 GCT GCT GCT GCT GCT GCT GCT GCT -GCT GCT GCT GCT GCT GCT GCT
* * * * * * *
733666 GCT G-T AGTT CCA GCT GCT GCT GCT GCC GCT G-T AGTT CCA GCT GCT
1 GCT GCT -GCT GCT GCT GCT GCT GCT GCT GCT GCT -GCT GCT GCT GCT
733711 GCT GCT GCT GCT GCT GCT GC
1 GCT GCT GCT GCT GCT GCT GC
733731 CACTTAAGTT
Statistics
Matches: 80, Mismatches: 21, Indels: 12
0.71 0.19 0.11
Matches are distributed among these distances:
2 3 0.04
3 74 0.93
4 3 0.04
ACGTcount: A:0.05, C:0.34, G:0.31, T:0.30
Consensus pattern (3 bp):
GCT
Found at i:733749 original size:27 final size:27
Alignment explanation
Indices: 733719--733771 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
733709 CTGCTGCTGC
*
733719 TGCTGCTGCTGCCACTTAAGTTCCAAG
1 TGCTGCTGCTGCCACTGAAGTTCCAAG
**
733746 TGCTGCTGCTGCTGCTGAAGTTCCAA
1 TGCTGCTGCTGCCACTGAAGTTCCAA
733772 CTGCCGCTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (27 bp):
TGCTGCTGCTGCCACTGAAGTTCCAAG
Found at i:739149 original size:31 final size:31
Alignment explanation
Indices: 739114--739187 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
739104 AACAAATAAG
*
739114 TTTTGTTCACTTACGTTATTGTTTTATTAAA
1 TTTTGTTCACTTACGTTATCGTTTTATTAAA
* *
739145 TTTTGGTCACTTACGTTATCGTTTTATTAAG
1 TTTTGTTCACTTACGTTATCGTTTTATTAAA
739176 TTTT-TGTCACTT
1 TTTTGT-TCACTT
739188 GAACGTTGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.57
Consensus pattern (31 bp):
TTTTGTTCACTTACGTTATCGTTTTATTAAA
Found at i:739726 original size:20 final size:20
Alignment explanation
Indices: 739697--739749 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
739687 TTTCAAAGAG
*
739697 ATGCACCGATGCACCA-ATCC
1 ATGCATCGATGCACCATA-CC
739717 ATGCATCGATGCA-CATACC
1 ATGCATCGATGCACCATACC
*
739736 ATGTATCGATGCAC
1 ATGCATCGATGCAC
739750 TCAGAGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (20 bp):
ATGCATCGATGCACCATACC
Found at i:739830 original size:65 final size:65
Alignment explanation
Indices: 739717--739859 Score: 195
Period size: 65 Copynumber: 2.2 Consensus size: 65
739707 GCACCAATCC
* * *
739717 ATGCATCGATGCA-CATACCATGTATCGATGCACTCAGAGTTTTATGAAAACATCGAATGTATTT
1 ATGCATCGATGCACCAGACCATGCATCGATGCACTCAGAGTTTTATG-AAACATCGAATGCATTT
739781 G
65 G
739782 ATGCATCGATGCACCAGA-CATGCATCGATGCACTCA-AGCTATTT-TGAAACATCGAATGCATT
1 ATGCATCGATGCACCAGACCATGCATCGATGCACTCAGAG-T-TTTATGAAACATCGAATGCATT
*
739844 TT
64 TG
739846 ATGCATCGATGCAC
1 ATGCATCGATGCAC
739860 TCTTAGTGCA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
64 32 0.45
65 33 0.46
66 6 0.08
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (65 bp):
ATGCATCGATGCACCAGACCATGCATCGATGCACTCAGAGTTTTATGAAACATCGAATGCATTTG
Found at i:741930 original size:21 final size:20
Alignment explanation
Indices: 741893--741941 Score: 89
Period size: 21 Copynumber: 2.4 Consensus size: 20
741883 CAAAGGTCAA
741893 TGATGATCATCAAAGAAAAT
1 TGATGATCATCAAAGAAAAT
741913 TGATGATCATCAAAAGAAAAT
1 TGATGATCATC-AAAGAAAAT
741934 TGATGATC
1 TGATGATC
741942 TTAAAACTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.47, C:0.10, G:0.16, T:0.27
Consensus pattern (20 bp):
TGATGATCATCAAAGAAAAT
Found at i:745610 original size:44 final size:44
Alignment explanation
Indices: 745557--745662 Score: 212
Period size: 44 Copynumber: 2.4 Consensus size: 44
745547 ATCAATGCAT
745557 CCTTGAATGTGCATCGATACACCATGAAGGTGCACCGATGCACG
1 CCTTGAATGTGCATCGATACACCATGAAGGTGCACCGATGCACG
745601 CCTTGAATGTGCATCGATACACCATGAAGGTGCACCGATGCACG
1 CCTTGAATGTGCATCGATACACCATGAAGGTGCACCGATGCACG
745645 CCTTGAATGTGCATCGAT
1 CCTTGAATGTGCATCGAT
745663 GCACAAGGTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (44 bp):
CCTTGAATGTGCATCGATACACCATGAAGGTGCACCGATGCACG
Found at i:745612 original size:23 final size:23
Alignment explanation
Indices: 745543--745667 Score: 125
Period size: 23 Copynumber: 5.7 Consensus size: 23
745533 AAACCTAACA
* *
745543 GTGCATCAATGCA-TCCTTGAAT
1 GTGCATCGATGCACACCTTGAAT
* *
745565 GTGCATCGAT--ACACCATGAAG
1 GTGCATCGATGCACACCTTGAAT
* *
745586 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCACACCTTGAAT
* *
745609 GTGCATCGAT--ACACCATGAAG
1 GTGCATCGATGCACACCTTGAAT
* *
745630 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCACACCTTGAAT
745653 GTGCATCGATGCACA
1 GTGCATCGATGCACA
745668 AGGTCATGCA
Statistics
Matches: 80, Mismatches: 18, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.01
21 32 0.40
22 9 0.11
23 38 0.47
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.22
Consensus pattern (23 bp):
GTGCATCGATGCACACCTTGAAT
Found at i:747728 original size:2 final size:2
Alignment explanation
Indices: 747721--747764 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
747711 TTTGAACTTA
747721 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
747763 AT
1 AT
747765 TTGGTTTGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:748551 original size:73 final size:72
Alignment explanation
Indices: 748430--748579 Score: 182
Period size: 72 Copynumber: 2.1 Consensus size: 72
748420 AAGGCATTTC
* *
748430 ATGCATCGATGCAGATACCATGCATCGGATCACTCAGAGTTTTATGAAAACATCGAATGCATTTG
1 ATGCATCGATGCACAGACCATGCATCGGATCACTCAGAGTTTTATG-AAACATCGAATGCATTTG
*
748495 ATGCATCG
65 ATGCACCG
*
748503 ATGCATCGATGCACCAGA-CATGCATC-GATGCACTCAG-GCTATTT-TGAAACATCGAATTCAT
1 ATGCATCGATGCA-CAGACCATGCATCGGAT-CACTCAGAG-T-TTTATGAAACATCGAATGCAT
*
748564 TTTATGCACCG
62 TTGATGCACCG
748575 ATGCA
1 ATGCA
748580 CTAAGGGTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
72 32 0.47
73 31 0.46
74 5 0.07
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (72 bp):
ATGCATCGATGCACAGACCATGCATCGGATCACTCAGAGTTTTATGAAACATCGAATGCATTTGA
TGCACCG
Found at i:751925 original size:13 final size:14
Alignment explanation
Indices: 751867--751928 Score: 53
Period size: 13 Copynumber: 4.6 Consensus size: 14
751857 AAACTACGTG
751867 ACTATGTGATATGA
1 ACTATGTGATATGA
751881 A--ATGTGATA-GA
1 ACTATGTGATATGA
* *
751892 GAGCTATATGA-AAGA
1 -A-CTATGTGATATGA
751907 ACTATGTGATATGA
1 ACTATGTGATATGA
751921 A-TATGTGA
1 ACTATGTGA
751929 ATGTGTAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 13
0.71 0.05 0.24
Matches are distributed among these distances:
11 2 0.05
12 9 0.23
13 14 0.36
14 7 0.18
15 7 0.18
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (14 bp):
ACTATGTGATATGA
Found at i:752992 original size:30 final size:31
Alignment explanation
Indices: 752915--753097 Score: 318
Period size: 31 Copynumber: 6.0 Consensus size: 31
752905 CCCGAAGGAC
* *
752915 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
752946 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
752977 CAGTCCATA-GTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
753007 CAGTCCATATGTCCCGAAGAACATAGGT-AA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
753037 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
753068 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
753098 CCCTCGACCC
Statistics
Matches: 147, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
30 60 0.41
31 86 0.59
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:753098 original size:61 final size:60
Alignment explanation
Indices: 752915--753098 Score: 323
Period size: 61 Copynumber: 3.0 Consensus size: 60
752905 CCCGAAGGAC
* *
752915 CAGTCCATAGATTCCGAAGAACCTAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATAG-TCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGT-AA
752977 CAGTCCATAGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATAGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
753037 CAGTCCATATGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATA-GTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
753098 C
1 C
753099 CCTCGACCCT
Statistics
Matches: 119, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
60 11 0.09
61 98 0.82
62 10 0.08
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (60 bp):
CAGTCCATAGTCCCGAAGAACATAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAA
Found at i:755641 original size:177 final size:175
Alignment explanation
Indices: 755340--755691 Score: 686
Period size: 177 Copynumber: 2.0 Consensus size: 175
755330 GCTCCGGATT
755340 CTACCCTACATATTCCACCATGATATTTTCCACAAGTCTGACAATGTCTCTGTTGGTTCTGTCCT
1 CTACCCTACATATTCCACCATGATATTTTCCACAAGTCTGACAATGTCTCTGTTGGTTCTGTCCT
755405 CACCAATCCTACTGATTGGGTCTGTCTAACTTTCCCCTGATTTGATTCTCTAACGGAGGATTCTA
66 CACCAATCCTACTGATTGGGTCTGTCTAACTTTCCCCTGATTTGATTCTCTAACGGAGGATTCTA
755470 CCCCTCCAGACCTTGCCTGAGACTGAGTACCAGAATCTCTACCCC
131 CCCCTCCAGACCTTGCCTGAGACTGAGTACCAGAATCTCTACCCC
755515 CTACCCTACATATTCCACCATGATATTTTCCACAAGTCTGACAATGTCTCTGTTGGGTTCTGTCC
1 CTACCCTACATATTCCACCATGATATTTTCCACAAGTCTGACAATGTCTCTGTT-GGTTCTGTCC
755580 TCACCAAATCCTACTGATTGGGTCTGTCTAACTTTCCCCTGATTTGATTCTCTAACGGAGGATTC
65 TCACC-AATCCTACTGATTGGGTCTGTCTAACTTTCCCCTGATTTGATTCTCTAACGGAGGATTC
755645 TACCCCTCCAGACCTTGCCTGAGACTGAGTACCAGAATCTCTACCCC
129 TACCCCTCCAGACCTTGCCTGAGACTGAGTACCAGAATCTCTACCCC
755692 TCTTGGGTGG
Statistics
Matches: 175, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
175 54 0.31
176 15 0.09
177 106 0.61
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (175 bp):
CTACCCTACATATTCCACCATGATATTTTCCACAAGTCTGACAATGTCTCTGTTGGTTCTGTCCT
CACCAATCCTACTGATTGGGTCTGTCTAACTTTCCCCTGATTTGATTCTCTAACGGAGGATTCTA
CCCCTCCAGACCTTGCCTGAGACTGAGTACCAGAATCTCTACCCC
Found at i:757523 original size:31 final size:31
Alignment explanation
Indices: 757485--757669 Score: 336
Period size: 31 Copynumber: 6.0 Consensus size: 31
757475 CCCGAAGGAC
* *
757485 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
757516 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
757547 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
757578 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
757609 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
757640 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
757670 CCCTCGACCC
Statistics
Matches: 151, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
31 150 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:759680 original size:13 final size:13
Alignment explanation
Indices: 759662--759688 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
759652 GTAGGTTCAG
759662 GAAACTAAGAAGA
1 GAAACTAAGAAGA
759675 GAAACTAAGAAGA
1 GAAACTAAGAAGA
759688 G
1 G
759689 CAAGACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.07, G:0.26, T:0.07
Consensus pattern (13 bp):
GAAACTAAGAAGA
Found at i:763898 original size:79 final size:78
Alignment explanation
Indices: 763815--764107 Score: 371
Period size: 79 Copynumber: 3.7 Consensus size: 78
763805 GAACAAGCTC
*
763815 TTCTCATTAGGAACTCCTCCATTTGAAATGTTGATCCACCTCATTCTGTGATGGATTTGAGCAAA
1 TTCTCATTATGAAC-CCTCCATTTGAAATGTTGATCCACCTCATTCTGTGATGGATTTGAGCAAA
763880 GGTTGGATAAGTAT
65 GGTTGGATAAGTAT
* *
763894 TTCTCATTATGAA--CTCCATTTGAAATGTTGATCCACCTCATTTTGTGATGGATTTGAGCAAGG
1 TTCTCATTATGAACCCTCCATTTGAAATGTTGATCCACCTCATTCTGTGATGGATTTGAGCAAAG
*
763957 GTTGGATAAGTAC
66 GTTGGATAAGTAT
* * *
763970 TTCTCATTATGAACTCCTCAATTTGAAATGTTGATTCACCTC-TTCATGTGATGGATTAGAGCAA
1 TTCTCATTATGAAC-CCTCCATTTGAAATGTTGATCCACCTCATTC-TGTGATGGATTTGAGCAA
* * *
764034 AGTTTAGACAAGT-T
64 AGGTTGGATAAGTAT
* * **
764048 CTTCTCATTATGAACCATTCCA-TTGAAAATGTTGATTCACCTTTTTCTGTGATGGATTTG
1 -TTCTCATTATGAACC-CTCCATTTG-AAATGTTGATCCACCTCATTCTGTGATGGATTTG
764108 GACAAGTTGA
Statistics
Matches: 189, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
76 73 0.39
78 6 0.03
79 107 0.57
80 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (78 bp):
TTCTCATTATGAACCCTCCATTTGAAATGTTGATCCACCTCATTCTGTGATGGATTTGAGCAAAG
GTTGGATAAGTAT
Found at i:763994 original size:155 final size:157
Alignment explanation
Indices: 763814--764107 Score: 420
Period size: 155 Copynumber: 1.9 Consensus size: 157
763804 TGAACAAGCT
* *
763814 CTTCTCATTAGGAACTCCTCCATTTGAAATGTTGATCCACCTCATTC-TGTGATGGATTTGAGCA
1 CTTCTCATTAGGAACTCCTCAATTTGAAATGTTGATCCACCTC-TTCATGTGATGGATTAGAGCA
* *
763878 AAGGTTGGATAAGTAT-TTCTCATTATGAA-C-TCCATTTG-AAATGTTGATCCACCTCATTT-T
65 AAGGTTAGACAAGT-TCTTCTCATTATGAACCATCCA-TTGAAAATGTTGATCCACCT-ATTTCT
763938 GTGATGGATTTGAGCAAGGGTTGGATAAGTA
127 GTGATGGATTTGAGCAAGGGTTGGATAAGTA
* *
763969 CTTCTCATTATGAACTCCTCAATTTGAAATGTTGATTCACCTCTTCATGTGATGGATTAGAGCAA
1 CTTCTCATTAGGAACTCCTCAATTTGAAATGTTGATCCACCTCTTCATGTGATGGATTAGAGCAA
* * *
764034 AGTTTAGACAAGTTCTTCTCATTATGAACCATTCCATTGAAAATGTTGATTCACCTTTTTCTGTG
66 AGGTTAGACAAGTTCTTCTCATTATGAACCA-TCCATTGAAAATGTTGATCCACCTATTTCTGTG
764099 ATGGATTTG
130 ATGGATTTG
764108 GACAAGTTGA
Statistics
Matches: 123, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
154 4 0.03
155 80 0.65
156 1 0.01
157 6 0.05
158 32 0.26
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (157 bp):
CTTCTCATTAGGAACTCCTCAATTTGAAATGTTGATCCACCTCTTCATGTGATGGATTAGAGCAA
AGGTTAGACAAGTTCTTCTCATTATGAACCATCCATTGAAAATGTTGATCCACCTATTTCTGTGA
TGGATTTGAGCAAGGGTTGGATAAGTA
Found at i:764945 original size:116 final size:116
Alignment explanation
Indices: 764741--765434 Score: 444
Period size: 116 Copynumber: 5.8 Consensus size: 116
764731 GAGATAATAC
* * * * *
764741 TGATCCAACTCCTTATATGATGGATGAGAC-GAGGTTGAACAAGTTCTTCTCATTAGGAACTTTT
1 TGATCCACCTCCTTCTGTGATGGATGA-ACAAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCT
* * * * *
764805 TCTCCCTCATTG-GATGAGTTCTTCTCATTAGGAACTCTTCCATTGGAAATGT
65 TCTCCCTTATCGAGA-GAGTTCTTCTCATTACGAACTCTTCTATTAGAAATGT
* * * *
764857 TGATCTACCTCCTTCTGTGATGGAT-AACCCAAGGTTGAACAAGTTATTCTCATTAGGAACATCT
1 TGATCCACCTCCTTCTGTGATGGATGAA-CAAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCT
* * * * * * *
764921 CCTCCCTTATCGAGCA-AGTTCTTCTTATTACAAACTATTATATTAAAAATAT
65 TCTCCCTTATCGAG-AGAGTTCTTCTCATTACGAACTCTTCTATTAGAAATGT
* * *
764973 TGATCCACATCCTTCTGTGATGGATTTGAACAAAGGTTGGAA-GAGTTCTTCTCATTACGAACTT
1 TGATCCACCTCCTTCTGTGATGGA--TGAACAAAGGTT-GAACAAGTTCTTCTCATTAGGAACTT
* * *
765037 CTTCTCCATT-TCTAGGAGAGTTCTTCTCATTATGAACTCTTCTATTAGAAATGT
63 CTTCTCCCTTATCGA-GAGAGTTCTTCTCATTACGAACTCTTCTATTAGAAATGT
* * * * * *
765091 TGATCCACCTCATTCTGTGATGGATTTGGAC-AA-GTTGAACAAATTTTTCTTATTATGAACTTC
1 TGATCCACCTCCTTCTGTGATGGA--TGAACAAAGGTTGAACAAGTTCTTCTCATTAGGAACTTC
* * * * * *
765154 TTTTTTCTCTT-T-GAG-GAGTTATTCTCATTATGAACTCTTCTATTGGAAATGG
64 --TTCTCCCTTATCGAGAGAGTTCTTCTCATTACGAACTCTTCTATTAGAAATGT
* * *
765206 TGATCCACCTCCTTCTGCGATAGATTGAAGCCATCTCTAGTGAAACTTGAACAAGTTCTTCTCAT
1 TGATCCACCTCCTTCTGTGATGGA-TGAA--CA----AAG-G----TTGAACAAGTTCTTCTCAT
* * * * * ** * * *
765271 TATGAATTTTTTCTCCCTTGTTG-GATGAGTTCTTCTCATTATAAACCCTTC-ATCATAAATGT
54 TAGGAACTTCTTCTCCCTTATCGAGA-GAGTTCTTCTCATTACGAACTCTTCTATTAGAAATGT
** * * * * * *
765333 TGATTTGATTATCCATCAATTTGTGTGATGGATGAACCAAGGTTGAACAAGTTATTCTTATTATG
1 TGA--T--CCA-CC-TC--CTTCTGTGATGGATGAACAAAGGTTGAACAAGTTCTTCTCATTAGG
765398 AACTTCTTCTCCCTTATCG-GACGAGTTCTTCTCATTA
58 AACTTCTTCTCCCTTATCGAGA-GAGTTCTTCTCATTA
765435 TTAACCCCTA
Statistics
Matches: 454, Mismatches: 86, Indels: 69
0.75 0.14 0.11
Matches are distributed among these distances:
114 5 0.01
115 60 0.13
116 132 0.29
117 8 0.02
118 100 0.22
119 5 0.01
121 1 0.00
123 54 0.12
125 7 0.02
126 2 0.00
127 36 0.08
128 24 0.05
129 1 0.00
131 1 0.00
132 3 0.01
133 2 0.00
134 4 0.01
135 9 0.02
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (116 bp):
TGATCCACCTCCTTCTGTGATGGATGAACAAAGGTTGAACAAGTTCTTCTCATTAGGAACTTCTT
CTCCCTTATCGAGAGAGTTCTTCTCATTACGAACTCTTCTATTAGAAATGT
Found at i:765062 original size:118 final size:118
Alignment explanation
Indices: 764851--765150 Score: 308
Period size: 118 Copynumber: 2.6 Consensus size: 118
764841 CTTCCATTGG
* * *
764851 AAATGTTGATCTACCTCCTTCTGTGATGGA--T-AACCCAAGGTTGAACAAGTTATTCTCATTAG
1 AAATGTTGATCCACCTCCTTCTGTGATGGATTTGAA-CAAAGGTTGAACAAGTTATTCTCATTAC
* *
764913 GAACATCTCCTCCCTTATCGAGCAAGTTCTTCTTATTACAAACTATTATATTAA
65 GAACATCTCCTCCATTATCGAGCAAGTTCTTCTCATTACAAACTATTATATTAA
* * * *
764967 AAATATTGATCCACATCCTTCTGTGATGGATTTGAACAAAGGTTGGAA-GAGTTCTTCTCATTAC
1 AAATGTTGATCCACCTCCTTCTGTGATGGATTTGAACAAAGGTT-GAACAAGTTATTCTCATTAC
* * * * ** * * *
765031 GAACTTCTTCTCCATT-TCTAGGAGAGTTCTTCTCATTATGAACTCTTCTATTAG
65 GAACATCTCCTCCATTATCGAGCA-AGTTCTTCTCATTACAAACTATTATATTAA
* * * * * *
765085 AAATGTTGATCCACCTCATTCTGTGATGGATTTGGAC-AA-GTTGAACAAATTTTTCTTATTATG
1 AAATGTTGATCCACCTCCTTCTGTGATGGATTTGAACAAAGGTTGAACAAGTTATTCTCATTACG
765148 AAC
66 AAC
765151 TTCTTTTTTC
Statistics
Matches: 151, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
115 3 0.02
116 45 0.30
117 7 0.05
118 91 0.60
119 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (118 bp):
AAATGTTGATCCACCTCCTTCTGTGATGGATTTGAACAAAGGTTGAACAAGTTATTCTCATTACG
AACATCTCCTCCATTATCGAGCAAGTTCTTCTCATTACAAACTATTATATTAA
Found at i:768231 original size:19 final size:19
Alignment explanation
Indices: 768207--768247 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
768197 AAATGAATAG
*
768207 AATGTAATGCAAAAGGTAA
1 AATGTAATGCAAAAAGTAA
*
768226 AATGTAGTGCAAAAAGTAA
1 AATGTAATGCAAAAAGTAA
768245 AAT
1 AAT
768248 ACAAATGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (19 bp):
AATGTAATGCAAAAAGTAA
Found at i:770621 original size:17 final size:17
Alignment explanation
Indices: 770581--770621 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
770571 CCTACTCTTA
*
770581 CATGCTGGCTACCAAAT
1 CATGCTTGCTACCAAAT
770598 CATGCTTGCTACCAAAT
1 CATGCTTGCTACCAAAT
770615 CATGCTT
1 CATGCTT
770622 TAGCAAATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (17 bp):
CATGCTTGCTACCAAAT
Found at i:770630 original size:15 final size:16
Alignment explanation
Indices: 770589--770630 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
770579 TACATGCTGG
770589 CTACCAAATCATGCTT
1 CTACCAAATCATGCTT
770605 GCTACCAAATCATGCTT
1 -CTACCAAATCATGCTT
*
770622 -TAGCAAATC
1 CTACCAAATC
770631 CTACCCAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 8 0.33
17 16 0.67
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (16 bp):
CTACCAAATCATGCTT
Found at i:774784 original size:44 final size:44
Alignment explanation
Indices: 774739--774821 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
774729 TTTGTGGCGT
*
774739 TTTGACCCAAAAA-TACCGCTAAATATTATGACATATAGTAGCG
1 TTTGACCCAAAAAGCACCGCTAAATATTATGACATATAGTAGCG
** * * *
774782 TTTGTTCCAAAAAGCGCCGCTAAATGTTATGTCATATAGT
1 TTTGACCCAAAAAGCACCGCTAAATATTATGACATATAGT
774822 GACGTTGGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 11 0.33
44 22 0.67
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (44 bp):
TTTGACCCAAAAAGCACCGCTAAATATTATGACATATAGTAGCG
Found at i:775069 original size:21 final size:21
Alignment explanation
Indices: 775045--775099 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
775035 ATTTTCCAAT
*
775045 AAACTTGACATCCATAACAAC
1 AAACTTGAAATCCATAACAAC
*
775066 AAACTTGAAATCCATAACAAG
1 AAACTTGAAATCCATAACAAC
775087 AAACTTGAAATCC
1 AAACTTGAAATCC
775100 GTAATAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (21 bp):
AAACTTGAAATCCATAACAAC
Found at i:776796 original size:3 final size:3
Alignment explanation
Indices: 776784--776826 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
776774 GTCTAAAAAA
776784 TAT TATT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
776827 TTAATTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:777669 original size:43 final size:44
Alignment explanation
Indices: 777597--777680 Score: 161
Period size: 43 Copynumber: 1.9 Consensus size: 44
777587 AAAAAAAAGG
777597 TTGATATTTACAGAAAACTTAAGGGGGAAATTGCACTTAGGAGT
1 TTGATATTTACAGAAAACTTAAGGGGGAAATTGCACTTAGGAGT
777641 TTGATATTTACAG-AAACTTAAGGGGGAAATTGCACTTAGG
1 TTGATATTTACAGAAAACTTAAGGGGGAAATTGCACTTAGG
777681 TCCCCTGACT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 27 0.68
44 13 0.32
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (44 bp):
TTGATATTTACAGAAAACTTAAGGGGGAAATTGCACTTAGGAGT
Found at i:778587 original size:17 final size:17
Alignment explanation
Indices: 778565--778609 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
778555 GAAGTAAATC
778565 AATTTATTTTGCTAATT
1 AATTTATTTTGCTAATT
778582 AATTTATTTTGCTAATT
1 AATTTATTTTGCTAATT
*
778599 AATTCATTTTG
1 AATTTATTTTG
778610 TATTTTAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.58
Consensus pattern (17 bp):
AATTTATTTTGCTAATT
Found at i:780651 original size:15 final size:14
Alignment explanation
Indices: 780618--780654 Score: 51
Period size: 12 Copynumber: 2.7 Consensus size: 14
780608 GGATCAATAT
780618 TTTTGCATC-TGCA
1 TTTTGCATCTTGCA
780631 -TTTGCATCTTTGCA
1 TTTTGCATC-TTGCA
780645 TTTTGCATCT
1 TTTTGCATCT
780655 ACATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.38
14 5 0.24
15 8 0.38
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.51
Consensus pattern (14 bp):
TTTTGCATCTTGCA
Found at i:781971 original size:15 final size:15
Alignment explanation
Indices: 781951--781982 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
781941 GATTCAATCA
781951 AAACAAAGAGAAAAG
1 AAACAAAGAGAAAAG
781966 AAACAAAGAGAAAAG
1 AAACAAAGAGAAAAG
781981 AA
1 AA
781983 GAAAAAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.75, C:0.06, G:0.19, T:0.00
Consensus pattern (15 bp):
AAACAAAGAGAAAAG
Found at i:781980 original size:22 final size:21
Alignment explanation
Indices: 781955--782000 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
781945 CAATCAAAAC
781955 AAAG-AGAAAAGAAACAAAGAGA
1 AAAGAAGAAAA-AAACAAAG-GA
*
781977 AAAGAAGAAAAAATCAAAGGA
1 AAAGAAGAAAAAAACAAAGGA
781998 AAA
1 AAA
782001 ATCAAAGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 11 0.50
23 6 0.27
ACGTcount: A:0.74, C:0.04, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAGAAGAAAAAAACAAAGGA
Found at i:782012 original size:26 final size:24
Alignment explanation
Indices: 781981--782040 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 24
781971 AAGAGAAAAG
* *
781981 AAGAAAAAATCAAAGGAAAAATCA
1 AAGAAAAAATCAAAAGAAAAAGCA
782005 AAGTGAAAAAATCAAAAGAAAAAGCA
1 AA--GAAAAAATCAAAAGAAAAAGCA
782031 AAGAAAAAAT
1 AAGAAAAAAT
782041 AAGACAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.31
26 22 0.69
ACGTcount: A:0.72, C:0.07, G:0.13, T:0.08
Consensus pattern (24 bp):
AAGAAAAAATCAAAAGAAAAAGCA
Found at i:782014 original size:14 final size:13
Alignment explanation
Indices: 781983--782040 Score: 68
Period size: 12 Copynumber: 4.6 Consensus size: 13
781973 GAGAAAAGAA
781983 GAAAAAATCAAAG
1 GAAAAAATCAAAG
781996 G-AAAAATCAAAG
1 GAAAAAATCAAAG
*
782008 TGAAAAAATCAAAA
1 -GAAAAAATCAAAG
*
782022 G-AAAAAGCAAA-
1 GAAAAAATCAAAG
782033 GAAAAAAT
1 GAAAAAAT
782041 AAGACAAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
11 1 0.03
12 25 0.64
13 3 0.08
14 10 0.26
ACGTcount: A:0.71, C:0.07, G:0.14, T:0.09
Consensus pattern (13 bp):
GAAAAAATCAAAG
Found at i:783270 original size:37 final size:37
Alignment explanation
Indices: 783229--783339 Score: 138
Period size: 37 Copynumber: 3.0 Consensus size: 37
783219 AAACAAAGGG
*
783229 TTGTCTCGCTTAAGACAAGTTTTCTTAAAAACAAATT
1 TTGTCTCGCTTGAGACAAGTTTTCTTAAAAACAAATT
* *
783266 TTGTCTCGCTTGAGAC-AGTTTTCGCTAAAAACAAAAT
1 TTGTCTCGCTTGAGACAAGTTTTC-TTAAAAACAAATT
* *
783303 TTGTCTTGCTTGAGACAA--TTTCTCTCAAAACAAATT
1 TTGTCTCGCTTGAGACAAGTTTTCT-TAAAAACAAATT
783339 T
1 T
783340 CGCCTTGCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
36 22 0.34
37 41 0.64
38 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (37 bp):
TTGTCTCGCTTGAGACAAGTTTTCTTAAAAACAAATT
Found at i:783347 original size:36 final size:36
Alignment explanation
Indices: 783254--783351 Score: 117
Period size: 37 Copynumber: 2.7 Consensus size: 36
783244 CAAGTTTTCT
* *
783254 TAAAAACAAATTTTGTCTCGCTTGAGACAGTTTTCGC
1 TAAAAACAAA-TTTGTCTTGCTTGAGACAGATTTCGC
*
783291 TAAAAACAAAATTTGTCTTGCTTGAGACA-ATTTCTC
1 TAAAAAC-AAATTTGTCTTGCTTGAGACAGATTTCGC
* *
783327 TCAAAACAAATTTCGCCTTGCTTGA
1 TAAAAACAAATTT-GTCTTGCTTGA
783352 CATATTTTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
35 6 0.11
36 21 0.39
37 24 0.44
38 3 0.06
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (36 bp):
TAAAAACAAATTTGTCTTGCTTGAGACAGATTTCGC
Found at i:783579 original size:67 final size:67
Alignment explanation
Indices: 783498--783691 Score: 318
Period size: 67 Copynumber: 2.9 Consensus size: 67
783488 CTTCAAAAAC
*
783498 CTTTGAGAAT-GTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACATTTTCTCTTGAAACACC
1 CTTTGAG-ATCGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTGAAACACC
783562 AAT
65 AAT
*
783565 CTTTGAGATCGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTCAAACACCA
1 CTTTGAGATCGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTGAAACACCA
783630 AT
66 AT
* * * *
783632 TTTTGAGATCGTTTCCCTTGAAACAAAGTTTTGTCTCCCTTGAGATAGTTTCTCTTGAAA
1 CTTTGAGATCGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTGAAA
783692 TAAATCCCTA
Statistics
Matches: 119, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
66 2 0.02
67 117 0.98
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (67 bp):
CTTTGAGATCGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTGAAACACCA
AT
Found at i:785729 original size:42 final size:42
Alignment explanation
Indices: 785630--785730 Score: 157
Period size: 42 Copynumber: 2.4 Consensus size: 42
785620 TCCTTAAGGA
* *
785630 GTGGTCCTTCGGGACATCTATGTGGTCCTTCGGGACATCTAT
1 GTGGTCCTTCAGGACATCTATGTGGTCCTTCGGGACATATAT
*
785672 GTGGTCCTTCGGGACATCTATGTGGTCCTTCGGGACATATAT
1 GTGGTCCTTCAGGACATCTATGTGGTCCTTCGGGACATATAT
* *
785714 GTGGTTCTTTAGGACAT
1 GTGGTCCTTCAGGACAT
785731 TTTTACGCGG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.35
Consensus pattern (42 bp):
GTGGTCCTTCAGGACATCTATGTGGTCCTTCGGGACATATAT
Found at i:785730 original size:21 final size:21
Alignment explanation
Indices: 785630--785718 Score: 169
Period size: 21 Copynumber: 4.2 Consensus size: 21
785620 TCCTTAAGGA
785630 GTGGTCCTTCGGGACATCTAT
1 GTGGTCCTTCGGGACATCTAT
785651 GTGGTCCTTCGGGACATCTAT
1 GTGGTCCTTCGGGACATCTAT
785672 GTGGTCCTTCGGGACATCTAT
1 GTGGTCCTTCGGGACATCTAT
*
785693 GTGGTCCTTCGGGACATATAT
1 GTGGTCCTTCGGGACATCTAT
785714 GTGGT
1 GTGGT
785719 TCTTTAGGAC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
21 67 1.00
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.34
Consensus pattern (21 bp):
GTGGTCCTTCGGGACATCTAT
Found at i:786439 original size:16 final size:17
Alignment explanation
Indices: 786412--786445 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
786402 ATTTTCATTT
786412 TTTTGTAAAAGTAAATG
1 TTTTGTAAAAGTAAATG
*
786429 TTTTG-AAAAGTCAATG
1 TTTTGTAAAAGTAAATG
786445 T
1 T
786446 GACACCTCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (17 bp):
TTTTGTAAAAGTAAATG
Found at i:786888 original size:173 final size:176
Alignment explanation
Indices: 786630--786999 Score: 683
Period size: 173 Copynumber: 2.1 Consensus size: 176
786620 GTCATCCCCT
*
786630 GACCAGACCTCTTCATCACATAGGAGTCGTGTCACCCCTAGATAACCAGCTGTCCTTATCGAGTA
1 GACCAGAAC-CTTCATCACATAGGAGTCGTGTCACCCCTAGATAACCAGCTGTCCTTATCGAGTA
786695 GGAACTGTGTTATTACCCTCCCTAAAGATCGCCAAGATGTCCTCATCGCGTAGGAACAATTTCAT
65 GGAACTGTGTTATTACCCTCCCTAAAGATCGCCAAGATGTCCTCATCGCGTAGGAACAATTTCAT
786760 CCACTGACCAG-CTCCTCATCACGTAGGAGTCGTGTCACTCTTAGAC
130 CCACTGACCAGACTCCTCATCACGTAGGAGTCGTGTCACTCTTAGAC
786806 GACCA-AA-CTTCATCACATAGGAGTCGTGTCACCCCTAGATAACCAGCTGTCCTTATCGAGTAG
1 GACCAGAACCTTCATCACATAGGAGTCGTGTCACCCCTAGATAACCAGCTGTCCTTATCGAGTAG
786869 GAACTGTGTTATTACCCTCCCTAAAGATCGCCAAGATGTCCTCATCGCGTAGGAACAATTTCATC
66 GAACTGTGTTATTACCCTCCCTAAAGATCGCCAAGATGTCCTCATCGCGTAGGAACAATTTCATC
786934 CACTGACCAGATCTCCTCATCACGTAGGAGTCGTGTCACTCTTAGAC
131 CACTGACCAGA-CTCCTCATCACGTAGGAGTCGTGTCACTCTTAGAC
786981 GACCAGAACTCTTCATCAC
1 GACCAGAAC-CTTCATCAC
787000 GTATGAGCAG
Statistics
Matches: 188, Mismatches: 1, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
173 131 0.70
175 41 0.22
176 7 0.04
178 9 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (176 bp):
GACCAGAACCTTCATCACATAGGAGTCGTGTCACCCCTAGATAACCAGCTGTCCTTATCGAGTAG
GAACTGTGTTATTACCCTCCCTAAAGATCGCCAAGATGTCCTCATCGCGTAGGAACAATTTCATC
CACTGACCAGACTCCTCATCACGTAGGAGTCGTGTCACTCTTAGAC
Found at i:787182 original size:3 final size:3
Alignment explanation
Indices: 787168--787199 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
787158 ATCTAAAAAA
787168 TAT TAT TAAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT T
787200 TGAATTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:791263 original size:41 final size:41
Alignment explanation
Indices: 791215--791484 Score: 272
Period size: 41 Copynumber: 6.5 Consensus size: 41
791205 AAACACAAAT
* *
791215 GCCACTAAAGTACGAGTCTTTAGCAGCATTTGTATAAAAAC
1 GCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAAC
** ** * *
791256 TACACTAAAGTATAAGTCTATAGCGGCATTTATAAACACAAAC
1 GCCACTAAAGTACGAGTCTATAGCGGCATTTGTATA-A-AAAC
* * * **
791299 GCCACTAAAGTACAAATTTATAGCGATATTTGTATAAAAAC
1 GCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAAC
** * * * *
791340 GCCACTAAAGGT-TTAGTATATAGCGTCGTTTGTATAAAAAA
1 GCCACTAAA-GTACGAGTCTATAGCGGCATTTGTATAAAAAC
* * * *
791381 GTCACTAAAGTACTAGTTTATAGCGGCATTTATATAAAAAC
1 GCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAAC
* * *
791422 ACCACTAAAGTACGAGCCTATAGCGGCGTTTGTATAAAAAC
1 GCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAAC
791463 GCCACTAAAGTACGAGTCTATA
1 GCCACTAAAGTACGAGTCTATA
791485 ATGGTGAAGG
Statistics
Matches: 184, Mismatches: 41, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
40 2 0.01
41 147 0.80
42 4 0.02
43 31 0.17
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (41 bp):
GCCACTAAAGTACGAGTCTATAGCGGCATTTGTATAAAAAC
Found at i:792384 original size:13 final size:13
Alignment explanation
Indices: 792366--792395 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
792356 TATAACAACA
792366 CTAACACTTGTTT
1 CTAACACTTGTTT
792379 CTAACACTTGTTT
1 CTAACACTTGTTT
792392 CTAA
1 CTAA
792396 GTCCTAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (13 bp):
CTAACACTTGTTT
Found at i:793079 original size:2 final size:2
Alignment explanation
Indices: 793072--793115 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
793062 ATAATTATTT
793072 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
793113 TA T
1 TA T
793116 TAATAAATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:793119 original size:6 final size:7
Alignment explanation
Indices: 793073--793120 Score: 53
Period size: 8 Copynumber: 6.4 Consensus size: 7
793063 TAATTATTTT
793073 ATATATA
1 ATATATA
793080 TATATATA
1 -ATATATA
793088 TATATATA
1 -ATATATA
793096 TATATATA
1 -ATATATA
793104 TATATATA
1 -ATATATA
793112 ATAT-TA
1 ATATATA
793118 ATA
1 ATA
793121 AATTAAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 5 0.12
7 4 0.10
8 31 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATATATA
Found at i:793127 original size:5 final size:5
Alignment explanation
Indices: 793119--793148 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
793109 ATAATATTAA
793119 TAAAT TAAAT TAAATT TAAAT TAAAT TAAA
1 TAAAT TAAAT TAAA-T TAAAT TAAAT TAAA
793149 AAATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:796328 original size:41 final size:42
Alignment explanation
Indices: 796224--796363 Score: 151
Period size: 41 Copynumber: 3.4 Consensus size: 42
796214 GGTTAATCAA
** * *
796224 TAGCGGCGTTTATAGTAAAAACGCCGCAATAGAGTAGAAATT
1 TAGCGGCGTTTATACCAAAAATGCCGCAATAGAGTAGTAATT
* **
796266 TAGCGGCGTTT-TAGCC-CAAATGCCATAATAGAGT-GTAATT
1 TAGCGGCGTTTATA-CCAAAAATGCCGCAATAGAGTAGTAATT
* * *
796306 TAGCGACGTTTATACCAAAAATGCCGCAATAGAGTGGTAAAT
1 TAGCGGCGTTTATACCAAAAATGCCGCAATAGAGTAGTAATT
*
796348 TAGTGGCGTTTATACC
1 TAGCGGCGTTTATACC
796364 TCAAACATCG
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
40 17 0.21
41 33 0.41
42 30 0.38
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (42 bp):
TAGCGGCGTTTATACCAAAAATGCCGCAATAGAGTAGTAATT
Found at i:811844 original size:43 final size:43
Alignment explanation
Indices: 811796--811886 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
811786 GGAGGATAAC
* * *
811796 ATCCTCATCTTGTTTCTGCA-TGGGATCTTCTACTGAGGGCAAT
1 ATCCTCATCTTGTTTCTG-AGTGAGATCCTCTACGGAGGGCAAT
* *
811839 ATCCTCGTTTTGTTTCTGAGTGAGATCCTCTACGGAGGGCAAT
1 ATCCTCATCTTGTTTCTGAGTGAGATCCTCTACGGAGGGCAAT
811882 ATCCT
1 ATCCT
811887 TATCCTATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (43 bp):
ATCCTCATCTTGTTTCTGAGTGAGATCCTCTACGGAGGGCAAT
Found at i:814978 original size:16 final size:16
Alignment explanation
Indices: 814957--814989 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
814947 TACGACTCAA
814957 AATAGAAAATGCTAAC
1 AATAGAAAATGCTAAC
814973 AATAGAAAATGCTAAC
1 AATAGAAAATGCTAAC
814989 A
1 A
814990 GTCTTGCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (16 bp):
AATAGAAAATGCTAAC
Found at i:818609 original size:30 final size:29
Alignment explanation
Indices: 818526--818630 Score: 156
Period size: 29 Copynumber: 3.6 Consensus size: 29
818516 CACATTCAAA
* *
818526 AATTCTCAAAATGTCACATTTTTCAAAAT
1 AATTCCCAGAATGTCACATTTTTCAAAAT
818555 AATTCCCAGAATGTCACATTTTTCAAAAT
1 AATTCCCAGAATGTCACATTTTTCAAAAT
*
818584 AATTCCCAGAATGTCACCTTTTTTCAAAAT
1 AATTCCCAGAATGTCA-CATTTTTCAAAAT
* *
818614 AATTCTCATAATGTCAC
1 AATTCCCAGAATGTCAC
818631 TGGGTCGAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
29 44 0.63
30 26 0.37
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.36
Consensus pattern (29 bp):
AATTCCCAGAATGTCACATTTTTCAAAAT
Found at i:818669 original size:23 final size:22
Alignment explanation
Indices: 818632--818704 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 22
818622 TAATGTCACT
818632 GGGTCGAGTCGGGTCAACGGGTC
1 GGGTCGAGTC-GGTCAACGGGTC
*
818655 GGGTCGGGTCAGGTCAACGGGTC
1 GGGTCGAGTC-GGTCAACGGGTC
818678 GGGTCGAGTCGGTCAACGGGTC
1 GGGTCGAGTCGGTCAACGGGTC
818700 GGGTC
1 GGGTC
818705 AGACCGGTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
22 17 0.36
23 30 0.64
ACGTcount: A:0.12, C:0.22, G:0.48, T:0.18
Consensus pattern (22 bp):
GGGTCGAGTCGGTCAACGGGTC
Found at i:818712 original size:22 final size:21
Alignment explanation
Indices: 818643--818716 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 21
818633 GGTCGAGTCG
* *
818643 GGTCAACGGGTCGGGTCGGGTCA
1 GGTCAACGGGTCGGGTC--GACC
*
818666 GGTCAACGGGTCGGGTCGAGTC
1 GGTCAACGGGTCGGGTCGA-CC
818688 GGTCAACGGGTCGGGTCAGACC
1 GGTCAACGGGTCGGGTC-GACC
818710 GGTCAAC
1 GGTCAAC
818717 CCGATTCAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
21 1 0.02
22 25 0.56
23 19 0.42
ACGTcount: A:0.16, C:0.24, G:0.43, T:0.16
Consensus pattern (21 bp):
GGTCAACGGGTCGGGTCGACC
Found at i:818727 original size:19 final size:19
Alignment explanation
Indices: 818703--818753 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
818693 ACGGGTCGGG
818703 TCAGACCGGTCAACCCGAT
1 TCAGACCGGTCAACCCGAT
* *
818722 TCAGACCGATCAACCCGGT
1 TCAGACCGGTCAACCCGAT
**
818741 TTTGACCGGTCAA
1 TCAGACCGGTCAA
818754 ACCTGTCACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.20
Consensus pattern (19 bp):
TCAGACCGGTCAACCCGAT
Found at i:822536 original size:16 final size:16
Alignment explanation
Indices: 822512--822542 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
822502 TACGACTCAA
822512 AATAGAAAATGCTAAC
1 AATAGAAAATGCTAAC
*
822528 AATATAAAATGCTAA
1 AATAGAAAATGCTAA
822543 AAGTCTTGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.23
Consensus pattern (16 bp):
AATAGAAAATGCTAAC
Found at i:825050 original size:23 final size:22
Alignment explanation
Indices: 825013--825064 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
825003 AGTTGTGGGG
*
825013 ATGTTTTTAGTTTTTTTATTAA
1 ATGTTTTTAGTTTTTTAATTAA
*
825035 ATGTTTTTGGTATTTTTAATT-A
1 ATGTTTTTAGT-TTTTTAATTAA
825057 AT-TTTTTA
1 ATGTTTTTA
825065 AATAATTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 5 0.19
22 13 0.50
23 8 0.31
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (22 bp):
ATGTTTTTAGTTTTTTAATTAA
Found at i:841532 original size:15 final size:15
Alignment explanation
Indices: 841512--841547 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
841502 GAGGGAGATT
841512 GAAGGTTACTTTTCA
1 GAAGGTTACTTTTCA
841527 GAAGGTTACTTTTCA
1 GAAGGTTACTTTTCA
841542 GAAGGT
1 GAAGGT
841548 GATTGCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (15 bp):
GAAGGTTACTTTTCA
Found at i:846910 original size:6 final size:6
Alignment explanation
Indices: 846899--846933 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
846889 TAAGGTGATT
846899 GCCATC GCCATC GCCATC GCCATC GCCATC GCCAT
1 GCCATC GCCATC GCCATC GCCATC GCCATC GCCAT
846934 ACTCATAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.49, G:0.17, T:0.17
Consensus pattern (6 bp):
GCCATC
Found at i:847355 original size:21 final size:20
Alignment explanation
Indices: 847331--847375 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
847321 TTAATAAATA
* * *
847331 TTTACTTAAAATATTATTATT
1 TTTACCTAAAACATCATT-TT
847352 TTTACCTAAAACATCATTTT
1 TTTACCTAAAACATCATTTT
847372 TTTA
1 TTTA
847376 ACATTTTCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTACCTAAAACATCATTTT
Found at i:851387 original size:17 final size:17
Alignment explanation
Indices: 851360--851405 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
851350 AAAAATATAT
851360 ATAATATTATTTTCAAAA
1 ATAATATTATTTT-AAAA
851378 ATAA-ATTATTTTAAAA
1 ATAATATTATTTTAAAA
851394 ACTATATATTAT
1 A-TA-ATATTAT
851406 AGTTTACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.20
17 10 0.40
18 5 0.20
19 5 0.20
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (17 bp):
ATAATATTATTTTAAAA
Found at i:851519 original size:36 final size:36
Alignment explanation
Indices: 851438--851735 Score: 292
Period size: 39 Copynumber: 8.2 Consensus size: 36
851428 AACTACATAA
* * ** *
851438 TATATATGTTTTTAAAATGTTTTTTTAAACTATATAAT
1 TATATATATTTTCAAAATG-TTTTAAAAACCATAT-AT
* *
851476 ATGTATATGTTTTCAAAATGTTTTAAAAACCATATAT
1 -TATATATATTTTCAAAATGTTTTAAAAACCATATAT
** *
851513 TATATATATATATATTTAAATGTTTTAAAAACTATATAT
1 TATATATAT-T-T-TCAAAATGTTTTAAAAACCATATAT
*
851552 TATATA-AGTTTTTAAAATGTTTTAAAAA-C-TATAT
1 TATATATA-TTTTCAAAATGTTTTAAAAACCATATAT
851586 TATATATA--TTCAAAATGTTTTAAAAA-C-TATAT
1 TATATATATTTTCAAAATGTTTTAAAAACCATATAT
*
851618 TATATATATAATTT-AAAATGTTTTAAAAACTATATACT
1 TATATATAT--TTTCAAAATGTTTTAAAAACCATATA-T
* *
851656 ATATATATTTTTTCAAAATGTTTTAAAAACTATATAT
1 -TATATATATTTTCAAAATGTTTTAAAAACCATATAT
*
851693 TATATAAATTTTCAAAATGTTTTAAAAA-C-TATAT
1 TATATATATTTTCAAAATGTTTTAAAAACCATATAT
851727 TATATATAT
1 TATATATAT
851736 ATATATATAT
Statistics
Matches: 226, Mismatches: 19, Indels: 33
0.81 0.07 0.12
Matches are distributed among these distances:
32 31 0.14
34 24 0.11
35 16 0.07
36 51 0.23
37 12 0.05
38 38 0.17
39 54 0.24
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (36 bp):
TATATATATTTTCAAAATGTTTTAAAAACCATATAT
Found at i:851564 original size:26 final size:28
Alignment explanation
Indices: 851517--851568 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
851507 ATATATTATA
*
851517 TATATATATATTTAAATGTTTTAAAAAC
1 TATATATATATATAAATGTTTTAAAAAC
*
851545 TATATAT-TATATAAGT-TTTTAAAA
1 TATATATATATATAAATGTTTTAAAA
851569 TGTTTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 7 0.32
28 7 0.32
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (28 bp):
TATATATATATATAAATGTTTTAAAAAC
Found at i:851734 original size:2 final size:2
Alignment explanation
Indices: 851722--851803 Score: 157
Period size: 2 Copynumber: 41.5 Consensus size: 2
851712 TTTTAAAAAC
851722 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
851763 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
851804 GTTTCCACGA
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 78 0.99
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:851763 original size:141 final size:141
Alignment explanation
Indices: 851468--851768 Score: 389
Period size: 141 Copynumber: 2.1 Consensus size: 141
851458 TTTTTTAAAC
* ** *
851468 TATATA-ATATGTATATGTTTTCAAAATGTTTTAAAAACCATATATTATATATATATATATTTAA
1 TATATATATATATATATAATTTCAAAATGTTTTAAAAACCATATACTATATATATATATATTTAA
* *
851532 ATGTTTTAAAAACTATATATTATATAAGTTTTTAAAATGTTTTAAAAACTATATTATATATATTC
66 ATGTTTTAAAAACTATATATTATATAAATTTTCAAAATGTTTTAAAAACTATATTATATATATTC
* *
851597 AAAATGTTTTA
131 AAAATATTATA
* * *
851608 AAAACTATATTATATATATAATTT-AAAATGTTTTAAAAACTATATACTATATATAT-T-T-TTT
1 TATA-TATA-TATATATATAATTTCAAAATGTTTTAAAAACCATATACTATATATATATATATTT
851669 CAAAATGTTTTAAAAACTATATATTATATAAATTTTCAAAATGTTTTAAAAACTATATTATATAT
64 --AAATGTTTTAAAAACTATATATTATATAAATTTTCAAAATGTTTTAAAAACTATATTATATAT
*
851734 ATAT-ATATATATATATA
127 AT-TCA-AAATAT-TATA
851751 TATATATATATATATATA
1 TATATATATATATATATA
851769 TATATATATA
Statistics
Matches: 139, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
139 3 0.02
140 3 0.02
141 77 0.55
142 40 0.29
143 16 0.12
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (141 bp):
TATATATATATATATATAATTTCAAAATGTTTTAAAAACCATATACTATATATATATATATTTAA
ATGTTTTAAAAACTATATATTATATAAATTTTCAAAATGTTTTAAAAACTATATTATATATATTC
AAAATATTATA
Found at i:851867 original size:37 final size:36
Alignment explanation
Indices: 851826--851907 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
851816 TTTTAAAAAC
* * *
851826 TATATATGTTTTAAAAATGC-TTTCAAAAACTATATTA
1 TATATATATTTCAAAAAT-CATTT-AAAAACTATATAA
**
851863 TATATATATTTCAAAAATCATTTGTAAACTATATAA
1 TATATATATTTCAAAAATCATTTAAAAACTATATAA
851899 TATATATAT
1 TATATATAT
851908 ATATATATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 20 0.51
37 19 0.49
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.44
Consensus pattern (36 bp):
TATATATATTTCAAAAATCATTTAAAAACTATATAA
Found at i:852783 original size:85 final size:85
Alignment explanation
Indices: 852624--853286 Score: 844
Period size: 85 Copynumber: 7.8 Consensus size: 85
852614 TGATGTGTCA
* * * * ** * *
852624 TTGAGCTGAATGGAATCGAACTCGACAGTTTCTT-GTTGATAGATAGCTTTTCTCGACTTAAGCT
1 TTGAGCTGAATGTAATCGAACTCGA-AG-GTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCT
* * *
852688 AAGCTGTAAATTTGACATGCCC
64 ATGCTGTAAATTTGATATGCCT
* * *
852710 TTGAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
*
852775 GCTATAAATTTGATATGCCT
66 GCTGTAAATTTGATATGCCT
* ** * * * *
852795 TTGAGCTGAATGTAATCAAACTCGAAGGTCTTTATTGATAAAATAACCCTTCTCGCCTTAAGTTA
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGA-CAGATAACCCTTCTCGCCTTGAGCTA
* *
852860 TGTTGTAAATTTGATATGCTT
65 TGCTGTAAATTTGATATGCCT
* * * *
852881 TTGAGTTAAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCCCTTCTTGCCTTGAGCTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
*
852946 GCTGTAAATTTGATATGTCT
66 GCTGTAAATTTGATATGCCT
* * * * *
852966 TTGAGCTTAATGTAATCGAACTCGAAGGTCTTGGTTGGCATATAACTCTTCTCACCTTGAGCTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
* *
853031 GTTGTAAATTTGACATGCCT
66 GCTGTAAATTTGATATGCCT
*
853051 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
*
853116 GCTATAAATTTGATATGCCT
66 GCTGTAAATTTGATATGCCT
* * * * *
853136 TTGAGCT-AAGTGTAATCGTACTCGAAGGTCTTGGTTGATAGATAACCCTTCTTGCCTTAAGTTA
1 TTGAGCTGAA-TGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTA
* *
853200 TACTGTAAATTTGATATGCAT
65 TGCTGTAAATTTGATATGCCT
* * *
853221 TTGAGCTGAATGTAATCGAACTCGAAGATATTGGTTAACAGATAACCCTTCTCGCCTTGAGCTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
853286 G
66 G
853287 ATGTCAATAG
Statistics
Matches: 500, Mismatches: 73, Indels: 9
0.86 0.13 0.02
Matches are distributed among these distances:
84 5 0.01
85 395 0.79
86 100 0.20
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (85 bp):
TTGAGCTGAATGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGCTAT
GCTGTAAATTTGATATGCCT
Found at i:858693 original size:4 final size:4
Alignment explanation
Indices: 858684--858724 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
858674 AATTGAGTAA
*
858684 AAAT AAAT AAAT AAAG AAAT AAAAT AAAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT AAAT AAAT AAA
858725 CATGGTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 25 0.74
5 9 0.26
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:858796 original size:13 final size:13
Alignment explanation
Indices: 858780--858804 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
858770 CCAAAAGAAA
858780 AAAATAAATAAAT
1 AAAATAAATAAAT
858793 AAAATAAATAAA
1 AAAATAAATAAA
858805 AGGACCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:859898 original size:17 final size:18
Alignment explanation
Indices: 859857--859900 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
859847 AAACAAAAAT
*
859857 TAAATAAATAAGATATAA
1 TAAAAAAATAAGATATAA
* *
859875 TATAAAAATAATAT-TAA
1 TAAAAAAATAAGATATAA
859892 TAAAAAAAT
1 TAAAAAAAT
859901 TAAATATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
TAAAAAAATAAGATATAA
Found at i:860019 original size:37 final size:36
Alignment explanation
Indices: 859941--860079 Score: 122
Period size: 42 Copynumber: 3.6 Consensus size: 36
859931 AATAAAATAT
859941 TTTAAAAACTATAT-AT-TATA-TGTTTTCAAAAACTG
1 TTTAAAAACTATATAATATATATTGTTTTC-AAAA-TG
859976 ATTTTAAAAACTATATAATATATATGTGTTTTCAAAATG
1 --TTTAAAAACTATATAATATATAT-TGTTTTCAAAATG
*
860015 TTTAAAAAAAAAACTATATAATATGTATATGTTTTCAAAATG
1 TTT-----AAAAACTATATAATATATAT-TGTTTTCAAAATG
* * *
860057 TTTTAAAACCATATTATATATAT
1 TTTAAAAACTATATAATATATAT
860080 ATATATATAT
Statistics
Matches: 87, Mismatches: 6, Indels: 18
0.78 0.05 0.16
Matches are distributed among these distances:
37 33 0.38
38 2 0.02
39 6 0.07
40 4 0.05
41 7 0.08
42 35 0.40
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (36 bp):
TTTAAAAACTATATAATATATATTGTTTTCAAAATG
Found at i:860027 original size:42 final size:42
Alignment explanation
Indices: 859981--860087 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
859971 AACTGATTTT
*
859981 AAAAACTATATAATATATATGTGTTTTCAAAATGTTTAAAAA
1 AAAAACTATATAATATATATATGTTTTCAAAATGTTTAAAAA
* *
860023 AAAAACTATATAATATGTATATGTTTTCAAAATGTTTTAAAA
1 AAAAACTATATAATATATATATGTTTTCAAAATGTTTAAAAA
** * *
860065 CCATATTATATATATATATATAT
1 AAAAACTATATA-ATATATATAT
860088 ATATATATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 47 0.84
43 9 0.16
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (42 bp):
AAAAACTATATAATATATATATGTTTTCAAAATGTTTAAAAA
Found at i:860078 original size:2 final size:2
Alignment explanation
Indices: 860067--860105 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
860057 TTTTAAAACC
860067 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
860106 TTAAAATGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:860128 original size:35 final size:36
Alignment explanation
Indices: 860089--860159 Score: 110
Period size: 35 Copynumber: 2.0 Consensus size: 36
860079 TATATATATA
860089 TATATATATATATATATTT-AAAATGTTTTA-AAAAT
1 TATATATATATATAT-TTTCAAAATGTTTTACAAAAT
*
860124 TATATATATATGTATTTTCAAAATGTTTTACAAAAT
1 TATATATATATATATTTTCAAAATGTTTTACAAAAT
860160 GTTTAAAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 3 0.09
35 25 0.76
36 5 0.15
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (36 bp):
TATATATATATATATTTTCAAAATGTTTTACAAAAT
Found at i:860182 original size:2 final size:2
Alignment explanation
Indices: 860170--860223 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
860160 GTTTAAAAAC
*
860170 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
860211 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
860224 TTAAATGTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:860298 original size:27 final size:27
Alignment explanation
Indices: 860246--860298 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
860236 AAAATTATAT
*
860246 ACTATATATATCAAAATGTTTTAAAAA
1 ACTATATATATCAAAATGTTTCAAAAA
860273 ACTATATATTAT-ATAAAT-TTTCAAAA
1 ACTATATA-TATCA-AAATGTTTCAAAA
860299 TCTTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.40
Consensus pattern (27 bp):
ACTATATATATCAAAATGTTTCAAAAA
Found at i:860344 original size:39 final size:36
Alignment explanation
Indices: 860206--860356 Score: 170
Period size: 37 Copynumber: 4.2 Consensus size: 36
860196 ATATATATAT
860206 CTATATA-TATATATATATTT--AAATGTTTTAAAAA
1 CTATATATTATATATAT-TTTCAAAATGTTTTAAAAA
* *
860240 TTATATACTATATATA---TCAAAATGTTTTAAAAAA
1 CTATATATTATATATATTTTCAAAATGTTTT-AAAAA
* *
860274 CTATATATTATATAAATTTTCAAAATCTTTTAAAAAA
1 CTATATATTATATATATTTTCAAAATGTTTT-AAAAA
*
860311 CTATATATTATATATATGTTTCCACAATGTTTTAAAAA
1 CTATATATTATATATAT-TTT-CAAAATGTTTTAAAAA
860349 CTATATAT
1 CTATATAT
860357 GTTTTCAAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
31 1 0.01
33 9 0.09
34 24 0.24
35 8 0.08
37 33 0.33
38 16 0.16
39 9 0.09
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (36 bp):
CTATATATTATATATATTTTCAAAATGTTTTAAAAA
Found at i:860377 original size:29 final size:29
Alignment explanation
Indices: 860321--860385 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
860311 CTATATATTA
* **
860321 TATATATGTTTCCACAATGTTTTAAAAAC
1 TATATATGTTTCCAAAATAATTTAAAAAC
* *
860350 TATATATGTTTTCAAAATAATTTCAAAAC
1 TATATATGTTTCCAAAATAATTTAAAAAC
860379 TATATAT
1 TATATAT
860386 TATATATTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.43
Consensus pattern (29 bp):
TATATATGTTTCCAAAATAATTTAAAAAC
Found at i:860401 original size:34 final size:35
Alignment explanation
Indices: 860350--860428 Score: 94
Period size: 34 Copynumber: 2.3 Consensus size: 35
860340 TTTTAAAAAC
*
860350 TATATATGT-TTTCAAAATAATTT-CAAAACTAT-A
1 TATATATATATTTCAAAATAATTTGC-AAACTATAA
*
860383 TAT-TATATATTTCAAAAATCATTTGCAAACTATAA
1 TATATATATATTTC-AAAATAATTTGCAAACTATAA
860418 TATATATATAT
1 TATATATATAT
860429 ATATATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 4 0.10
33 7 0.18
34 16 0.41
35 5 0.13
36 7 0.18
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (35 bp):
TATATATATATTTCAAAATAATTTGCAAACTATAA
Found at i:860424 original size:2 final size:2
Alignment explanation
Indices: 860413--860451 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
860403 ATTTGCAAAC
860413 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
860452 AATACGAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:863561 original size:27 final size:27
Alignment explanation
Indices: 863509--863561 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
863499 ATCAATTTTA
*
863509 TGAAAAATATAAAATTAAGAACTAAAT
1 TGAAAAATATAAAATTAACAACTAAAT
* *
863536 TGAACAAATATGAAATT-ACAAGTAAA
1 TGAA-AAATATAAAATTAACAACTAAA
863562 AATTTAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.25
Consensus pattern (27 bp):
TGAAAAATATAAAATTAACAACTAAAT
Found at i:863894 original size:2 final size:2
Alignment explanation
Indices: 863889--865479 Score: 203
Period size: 2 Copynumber: 809.5 Consensus size: 2
863879 TTGAAACAAT
**
863889 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA CG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
863930 -A AA TA TA GTT TA T- TA -A TA TA AA CTA TA TA TA TA AA T- TA TG
1 TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * *
863970 TA TA TA TA TA TA TA TA TA -A TA TG TA TA TA AA T- TA TA TA GTT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* *
864011 TA TA TT TA TA T- TA T- TA TA TA CTA TA TA TA AA CTA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA
* * * *
864053 T- TA T- TA TA AA CTA TA TGG TT TA TA TT TA TA TA T- TA TA TA CTA
1 TA TA TA TA TA TA -TA TA T-A TA TA TA TA TA TA TA TA TA TA TA -TA
* * * * *
864095 TA TA CTA TA TA TA TG TA TA AA CTA TA TA TA CCA TG TA TA AA T-
1 TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA
* *
864137 TA TA GA GTT TA TA TGA -A CTA T- TGA -A CTA TA TA TA -A CTA TA
1 TA TA TA -TA TA TA T-A TA -TA TA T-A TA -TA TA TA TA TA -TA TA
* * * * *
864177 TA GTT TA T- TA -A TA TA AA T- TA TA TA GTT TA CA TA AA T- TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * * * *
864217 TA TGA -A T- TA TA TT TA AA TA TA TA CA -A CT- TA TA TT TA AA TA
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
864257 T- TA TA TA TA -A T- TA TA AA T- TA TA TA TA CTA TG TA TA AA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* * * *
864295 TA TA TA GTT TA T- TA -A TA AA CTA TA TA AA CTA AA T- TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA
* * *
864335 TA TA TA AA GTA TA TA TA CA TA TA TA -A TA TA TA AA GTA TA T- TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
864377 TA TA TA TA TA -A TA AA GTA TA -A T- TA TA AA GA CTA AA GTA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA -TA TA
* * * *
864417 TA GTA TA CA AA GT- TA TC TA AA GTA TA TA TA TA TA TA TA TA TA
1 TA -TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * *
864459 -A GT- TT TA GTA TA AA GTA TA TA TA AA TA TA TA -A TA -A TA TA
1 TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
864498 AA GTA -A GTA TA T- TA TA TA TA TA TA TA TA AA GTA TA -A TA TA
1 TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * * * *
864538 AA TA CTA AA GA TA TA AA TA TA -A TA TA AA GTA TA TA -A GTA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA
* * *
864579 TA TA AA CTA TA AA GTA TA TA TA CA CT- TA TA T- TA TA CT- TA TA
1 TA TA TA -TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA
* * * * *
864620 TA CTT TA T- TC TT TA TA -A T- TA TA CTC TA TA CA TA TA TA TA -A
1 TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * * * * *
864660 TA CTT TA TA CTA -A AA CTT TA TA TA TA TA CA CA CTT TA TA GTT TA
1 TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA -TA TA
* * *
864704 TA TA TA TA CT- TA TA TA CTT TA T- TA T- TA TG TA TG T- TA TA TA
1 TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * *
864744 CTT TA TA TT TA -A TA TT TA TA CTT TA TA T- TA TA TA TA TG TG TG
1 -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
864786 TA TA TA TA CT- TA TA TA CT- TA TA T- TA -A TA CT- TA TA CT- TA
1 TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA -TA TA
* * *
864824 TA T- TGC T- TA T- TA CTT TA TA T- TA TA TA TA TA TT TA TA T- TA
1 TA TA T-A TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
864863 TA TA -A GTA AA TA TA CTT TA TA TGA TA TA CT- TA TA TA CTT TA GTC
1 TA TA TA -TA TA TA TA -TA TA TA T-A TA TA -TA TA TA TA -TA TA -TA
* *
864907 TT TA TA TA T- TA TA TA AA TA TA T- TA TA TA T- TA T- TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
864944 TT TA TA T- TA -A T- TT TA TA TG TA TA TA TA CTT TA TA CTA -A AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA
*
864984 CTT TA TA TA TA TA TA TA TA -A TA TA T- TA -A TA TA TA T- TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
865023 TA CT- TG TA TA TG TA TA TA -A TA TA TA CTT TA GTC T- TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA -TA TA TA TA TA
* * *
865063 TA -A TA TA TA -A TA T- TT TT TA T- TA TA T- TA -A T- TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
865098 TA TA TA TA CTT TA TA CTA -A AA CTT TA TA TA TA TA TA TA TA T-
1 TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA
* *
865139 TA CT- TA TA TA -A T- TA TA CT- TA -A TA TA TA CT- TG TG TA T-
1 TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA
* * *
865175 TA TA TA TA GTC TT TA TA -A TA TA CTT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
*
865218 TA TA TA TA TA TA TA -A TCA -A CT- TA TA CTT TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA -TA TA TA -TA TA TA TA TA TA TA
* * * *
865257 TA TG TA TA TA TA CTT TA TA CTA -A AA CTT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA
*
865299 TA TA TA TA TA TC TA TA TA TA TA TA -A TA T- TA TA -A GTA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * * * * *
865338 TA TA TA TA AA GTT TT TT TA TA AA GTG TA TA TA CTT TA TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA
* * * * *
865381 TA CT- TA TA CT- TA TA CT- TT TT TT TA TA TA TG TA TT TA -A TA
1 TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
865420 T- TC TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
865460 -A CTA TA TA CT- TA TA -A TA TA T
1 TA -TA TA TA -TA TA TA TA TA TA T
865480 TAATGTATTG
Statistics
Matches: 1138, Mismatches: 227, Indels: 448
0.63 0.13 0.25
Matches are distributed among these distances:
1 126 0.11
2 916 0.80
3 96 0.08
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.48
Consensus pattern (2 bp):
TA
Found at i:863961 original size:13 final size:12
Alignment explanation
Indices: 863945--864052 Score: 74
Period size: 13 Copynumber: 8.4 Consensus size: 12
863935 TAGTTTATTA
863945 ATATAAACTATAT
1 ATATAAA-TATAT
863958 ATATAAAT-TAT
1 ATATAAATATAT
* *
863969 GTATATATATAT
1 ATATAAATATAT
*
863981 ATATATAATATGT
1 ATATA-AATATAT
863994 ATATAAATTATAT
1 ATATAAA-TATAT
* * *
864007 AGTTTATATTTAT
1 A-TATAAATATAT
*
864020 ATTATTATATACTAT
1 A-TA-TAAATA-TAT
864035 ATATAAACTATAT
1 ATATAAA-TATAT
864048 ATATA
1 ATATA
864053 TTATTATAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
11 9 0.12
12 10 0.13
13 39 0.52
14 13 0.17
15 4 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (12 bp):
ATATAAATATAT
Found at i:864021 original size:62 final size:63
Alignment explanation
Indices: 863957--864098 Score: 181
Period size: 61 Copynumber: 2.3 Consensus size: 63
863947 ATAAACTATA
* * * *
863957 TATATAAATTATGTA-TATATATATA-TATATA-ATATGTA-TATAAATTATATAGTTTATATT
1 TATATATATTATATACTATATATAAACTATATATATAT-TATTATAAACTATATAGTTTATATT
*
864017 TATAT-TATTATATACTATATATAAACTATATATATATTATTATAAACTATATGGTTTATA-T
1 TATATATATTATATACTATATATAAACTATATATATATTATTATAAACTATATAGTTTATATT
864078 T-TATATATTATATACTATATA
1 TATATATATTATATACTATATA
864099 CTATATATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
59 7 0.10
60 17 0.24
61 26 0.36
62 22 0.31
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.50
Consensus pattern (63 bp):
TATATATATTATATACTATATATAAACTATATATATATTATTATAAACTATATAGTTTATATT
Found at i:864037 original size:7 final size:7
Alignment explanation
Indices: 864025--864105 Score: 53
Period size: 7 Copynumber: 11.9 Consensus size: 7
864015 TTTATATTAT
864025 TATATAC
1 TATATAC
864032 TATATA-
1 TATATAC
864038 TA-A-AC
1 TATATAC
864043 TATATA-
1 TATATAC
*
864049 TATATTAT
1 TATA-TAC
*
864057 TATAAAC
1 TATATAC
**
864064 TATATGG
1 TATATAC
* *
864071 TTTATATT
1 TATATA-C
*
864079 TATATAT
1 TATATAC
864086 TATATAC
1 TATATAC
864093 TATATAC
1 TATATAC
864100 TATATA
1 TATATA
864106 TATGTATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
4 1 0.02
5 3 0.05
6 7 0.12
7 38 0.66
8 9 0.16
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.48
Consensus pattern (7 bp):
TATATAC
Done.