genome.fa.s7778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007778.1 Hibiscus syriacus cultivar Beakdansim tig00110061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85116

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217--304	45	1.9	46	95	2	160	26	6	15	51	1.69
219--315	45	2.1	46	90	1	151	26	6	17	49	1.70
810--841	16	2.1	15	94	5	55	18	15	6	59	1.57
2858--2896	14	2.6	16	88	8	55	17	17	12	51	1.76
4200--4252	17	3.4	17	71	26	53	77	5	15	1	1.04
4191--4258	31	2.2	31	82	10	95	75	5	14	4	1.16
5419--5564	36	4.0	36	78	7	143	30	19	13	37	1.89
5419--5564	73	2.0	75	82	6	183	30	19	13	37	1.89
5595--5718	30	3.9	30	71	19	108	27	21	15	35	1.94
5600--5886	66	4.3	65	87	5	335	27	21	14	37	1.92
5600--5886	131	2.2	132	86	3	398	27	21	14	37	1.92
7823--7879	30	1.9	30	92	0	96	17	12	8	61	1.55
13680--13825	60	2.4	59	78	9	136	44	5	18	31	1.72
16596--16663	22	3.3	21	86	13	90	38	4	0	57	1.19
16602--16659	19	2.9	19	83	14	73	39	5	0	55	1.22
17737--17776	3	13.3	3	84	10	55	30	2	0	67	1.04
17836--17874	21	2.0	21	90	10	64	20	7	0	71	1.10
23328--23352	12	2.1	12	100	0	50	60	32	0	8	1.26
26428--27073	314	2.1	314	91	2	1057	24	17	17	40	1.91
33411--33456	20	2.3	20	84	0	56	13	32	54	0	1.39
39238--39296	15	3.6	15	73	20	55	44	11	11	32	1.78
39240--39277	20	2.0	20	89	5	60	39	10	13	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39469--39518	21	2.4	21	93	0	82	26	28	24	22	1.99
39714--39768	13	4.2	13	75	13	58	49	12	3	34	1.59
39754--39852	33	3.0	33	94	1	164	45	15	7	32	1.73
39847--39886	21	1.9	21	94	0	71	47	7	15	30	1.72
56091--56199	31	3.5	31	96	0	191	41	21	17	20	1.91
56784--56820	20	1.9	19	89	10	58	27	35	27	10	1.90
60522--60630	31	3.5	31	96	0	191	41	22	17	19	1.90
61794--61833	18	2.2	18	100	0	80	40	5	27	27	1.77
62407--62465	31	1.9	31	96	0	109	42	6	8	42	1.61
62458--62607	40	3.8	40	73	14	157	54	14	0	31	1.45
62495--62616	26	4.6	26	65	25	76	53	15	0	30	1.48
62521--63300	54	14.4	54	70	15	352	52	12	0	34	1.42
62480--62634	80	1.9	80	96	0	283	52	13	0	32	1.45
62601--62660	22	2.7	22	100	0	120	51	15	0	33	1.43
62572--62669	22	4.5	21	79	8	63	55	15	0	29	1.41
62662--62715	14	3.6	14	72	18	54	57	5	0	37	1.22
62640--63273	32	22.4	32	73	23	536	52	12	0	34	1.41
62618--63138	86	6.2	86	85	9	715	52	12	0	34	1.41
62704--62746	22	2.0	22	100	0	86	51	13	0	34	1.42
62706--62754	22	2.2	22	88	3	71	55	14	0	30	1.40
62790--62834	22	2.0	22	95	0	81	48	11	0	40	1.39
62788--62840	22	2.4	22	87	6	72	52	9	0	37	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62848--62921	22	3.2	22	70	16	60	55	17	0	27	1.42
62988--63030	22	2.0	22	100	0	86	51	13	0	34	1.42
62990--63038	22	2.2	22	88	3	71	55	14	0	30	1.40
63042--63106	22	3.0	22	95	0	121	50	12	0	36	1.40
63152--63226	22	3.2	22	75	14	69	54	18	0	26	1.44
63203--63259	18	3.4	18	69	18	59	54	12	0	33	1.38
63221--63369	51	3.1	47	79	11	162	51	4	0	43	1.25
63221--63369	15	9.5	15	75	14	140	51	4	0	43	1.25
63195--63369	81	2.2	80	85	8	232	50	5	0	42	1.30
66089--66152	34	1.9	34	90	9	105	21	1	4	71	1.12
78830--78888	7	8.4	7	100	0	118	57	0	42	0	0.98
81665--81762	47	2.1	47	90	0	151	50	14	20	15	1.78
83933--83993	32	1.9	32	82	0	77	47	1	0	50	1.10
84107--84177	27	2.4	30	77	11	76	50	4	0	45	1.21
84917--84993	16	4.9	15	69	13	57	15	19	19	45	1.85
84927--84994	16	4.3	16	79	3	75	14	19	19	47	1.83
84917--84993	31	2.5	32	93	6	140	15	19	19	45	1.85

Tables:   1

The End!