genome.fa.s778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000778.1 Hibiscus syriacus cultivar Beakdansim tig00001513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82574

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7453--7491	20	2.0	20	84	0	51	69	12	0	17	1.19
8749--8855	3	35.7	3	92	0	160	60	0	3	35	1.14
9174--10072	113	8.0	113	94	0	1532	28	18	14	38	1.90
9174--10072	227	4.0	226	94	0	1532	28	18	14	38	1.90
9174--10072	340	2.7	339	97	0	1676	28	18	14	38	1.90
10700--11172	167	2.8	166	92	3	767	37	22	13	26	1.91
10700--11169	83	5.7	83	92	2	734	37	22	13	26	1.91
24582--24620	17	2.3	16	83	12	51	0	15	5	79	0.90
25100--25197	3	32.7	3	93	0	160	62	0	3	34	1.11
29392--29479	36	2.4	36	92	0	140	28	18	21	31	1.97
30979--31008	15	1.9	16	93	6	53	66	10	0	23	1.21
40527--40568	20	2.1	20	95	0	75	7	42	11	38	1.69
41787--41872	30	2.8	31	80	3	93	56	4	17	20	1.58
41821--41895	31	2.4	31	76	12	73	64	2	10	22	1.38
45386--45443	3	19.3	3	92	0	89	62	0	0	37	0.96
45762--46532	177	4.4	177	90	0	1231	30	21	16	31	1.96
48121--48367	52	4.8	51	85	2	309	23	22	17	37	1.94
48121--48367	51	4.8	51	84	5	302	23	22	17	37	1.94
48122--48367	103	2.4	101	84	6	327	23	21	17	37	1.93
49595--49654	8	7.0	8	83	16	68	0	15	0	85	0.61
49596--49653	10	5.6	10	85	6	71	0	13	0	86	0.58
49596--49643	7	6.9	7	88	7	71	0	12	0	87	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49595--49661	35	1.9	35	84	6	91	1	16	0	82	0.75
49606--49665	27	2.2	28	82	5	70	1	18	0	80	0.80
52825--52907	42	2.0	42	90	0	130	21	16	12	49	1.78
53249--53281	14	2.2	16	89	10	52	66	6	15	12	1.42
53174--53291	58	2.0	61	82	11	147	55	6	17	20	1.65
54333--54369	17	2.2	17	90	9	58	83	0	2	13	0.74
56519--56575	2	28.5	2	100	0	114	50	0	0	49	1.00
57652--57730	3	27.0	3	87	5	108	62	0	0	37	0.96
58820--58858	17	2.2	17	90	4	60	38	10	23	28	1.87
59255--59734	234	2.0	232	90	5	763	39	20	13	27	1.89
60306--60350	10	4.5	10	88	0	63	62	11	17	8	1.53
60621--60648	14	2.0	14	100	0	56	42	0	7	50	1.30
61845--61880	17	2.1	18	89	5	56	52	5	25	16	1.65
62593--62672	23	3.4	23	78	1	88	21	12	18	47	1.81
65099--65132	17	2.0	17	88	0	50	38	8	11	41	1.73
70370--70458	28	3.2	28	70	20	96	55	26	3	14	1.55
70347--70459	55	2.1	55	98	0	217	57	23	4	15	1.56
70367--70454	27	3.2	27	68	25	85	56	26	3	13	1.53
72188--72240	21	2.5	21	87	0	79	20	24	20	33	1.97
72227--72285	20	2.9	20	89	2	82	37	11	20	30	1.89
72277--72356	20	4.0	20	96	0	142	25	28	21	25	1.99
72845--72869	12	2.1	12	100	0	50	24	24	8	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73183--73242	24	2.5	24	78	10	77	25	16	18	40	1.91
75496--75530	18	1.9	18	94	0	61	54	25	2	17	1.57
75590--75859	140	1.9	140	98	0	522	28	13	15	42	1.85
75830--76068	20	12.9	20	70	16	165	33	22	18	25	1.97
75842--75974	54	2.5	54	86	4	187	36	26	15	21	1.93
75896--76029	34	3.8	34	76	15	128	35	23	18	22	1.96
75872--76112	74	3.3	74	87	4	265	34	21	19	24	1.97
76111--76164	20	2.7	20	82	5	65	11	16	27	44	1.82
76263--76324	14	4.3	14	73	6	52	45	14	1	38	1.55
78328--78381	20	2.7	20	94	0	90	37	24	18	20	1.94
80371--80480	20	5.6	20	85	1	96	44	23	15	16	1.86
80865--80950	22	4.0	22	83	7	88	20	15	40	23	1.90
81118--81268	20	7.7	20	77	10	132	27	20	25	26	1.99
81125--81199	38	1.9	39	89	5	116	25	20	25	29	1.99
82455--82503	21	2.5	19	80	9	53	77	2	2	18	0.96
82509--82564	21	2.6	20	81	13	58	71	1	10	16	1.22

Tables:   1

The End!