Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007780.1 Hibiscus syriacus cultivar Beakdansim tig00110063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 764298
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 4
Found at i:747215 original size:19 final size:18
Alignment explanation
Indices: 747187--747235 Score: 82
Period size: 19 Copynumber: 2.7 Consensus size: 18
747177 TATATATTTA
747187 AAAACAATAAAATAAATG
1 AAAACAATAAAATAAATG
747205 AAAACATATAAAATAAATG
1 AAAACA-ATAAAATAAATG
747224 AAAA-AATAAAAT
1 AAAACAATAAAAT
747236 TAAAAATCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
19 16 0.53
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (18 bp):
AAAACAATAAAATAAATG
Found at i:748530 original size:3 final size:3
Alignment explanation
Indices: 748522--748589 Score: 118
Period size: 3 Copynumber: 22.7 Consensus size: 3
748512 AATATATATT
*
748522 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
748570 TAC TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
748590 TGGATAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:749039 original size:113 final size:113
Alignment explanation
Indices: 748903--749570 Score: 1149
Period size: 113 Copynumber: 5.9 Consensus size: 113
748893 TGATAGTATC
* *
748903 AAAC-AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
1 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
*** * * * *
748967 TCATTATGAACCTTCTCTGGCAAAAATAATCCATCCAGTGATGAATTC
66 TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
* *
749015 AAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
1 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
*
749080 TCATTCATGAACTTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
66 TCATT-ATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
*
749129 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAGTTCTTC
1 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
749194 TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
66 TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
*
749242 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAGTTCTTC
1 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
749307 TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
66 TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
749355 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
1 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
*
749420 TCATTATGAACTTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
66 TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
*
749468 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAGTTCTTC
1 AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
* *
749533 TCATTATGAACCTTATCTGGCAATGAATGATCCATCAA
66 TCATTATGAACCTTCTCTGGCAATG-TTGATCCATCAA
749571 GTGGATTTGA
Statistics
Matches: 533, Mismatches: 20, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
112 4 0.01
113 416 0.78
114 113 0.21
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.38
Consensus pattern (113 bp):
AAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
TCATTATGAACCTTCTCTGGCAATGTTGATCCATCAAATGATGAATTT
Found at i:750448 original size:83 final size:84
Alignment explanation
Indices: 750277--750957 Score: 1250
Period size: 83 Copynumber: 8.2 Consensus size: 84
750267 TTCATCTTTT
* * *
750277 AATTCCAACGATTGGTTCTGTCC-AACCAGATTAGATAACTC-AAGAACACTTCCAGAAGATGCT
1 AATT-CAATGATTGGTTCTG-CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
750340 ATTGAGCAAATTCATCTTCCA
64 ATTGAGCAAATTCATCTTCCA
750361 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750426 TGAGCAAATTCATCTTCC-
66 TGAGCAAATTCATCTTCCA
750444 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750509 TGAGCAAATTCATCTTCCA
66 TGAGCAAATTCATCTTCCA
*
750528 AATTCAATGATTGGTTCTTCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750592 TGAGCAAATTCATCTTCCA
66 TGAGCAAATTCATCTTCCA
*
750611 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAGCACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750676 TGAGCAAATTCATCTTCC-
66 TGAGCAAATTCATCTTCCA
750694 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750759 TG-GCAAATTCATCTTCCA
66 TGAGCAAATTCATCTTCCA
750777 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750842 TGAGCAAATTCATCTTCCA
66 TGAGCAAATTCATCTTCCA
750861 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750926 TG-GCAAATTCATCTTCCA
66 TGAGCAAATTCATCTTCCA
750944 AATTCAATGATTGG
1 AATTCAATGATTGG
750958 ACTAAGATAT
Statistics
Matches: 584, Mismatches: 7, Indels: 13
0.97 0.01 0.02
Matches are distributed among these distances:
82 17 0.03
83 357 0.61
84 210 0.36
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (84 bp):
AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
TGAGCAAATTCATCTTCCA
Found at i:750543 original size:167 final size:167
Alignment explanation
Indices: 750277--750957 Score: 1246
Period size: 167 Copynumber: 4.1 Consensus size: 167
750267 TTCATCTTTT
* * *
750277 AATTCCAACGATTGGTTCTGTCC-AACCAGATTAGATAACTC-AAGAACACTTCCAGAAGATGCT
1 AATT-CAATGATTGGTTCTG-CCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
750340 ATTGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAG
64 ATTGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAG
750405 AACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCC-
129 AACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCCA
750444 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
*
750509 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTTCCAAATCAGATCAGATAACTCAAAGAA
66 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
750574 CACTTCCAGAAGATGCTA-TGAGCAAATTCATCTTCCA
131 CACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCCA
*
750611 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAGCACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750676 TGAGCAAATTCATCTTCC-AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
66 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
750740 CACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
131 CACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
750777 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750842 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
66 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
750907 CACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
131 CACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
750944 AATTCAATGATTGG
1 AATTCAATGATTGG
750958 ACTAAGATAT
Statistics
Matches: 502, Mismatches: 7, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
165 2 0.00
166 209 0.42
167 291 0.58
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (167 bp):
AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
CACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
Found at i:750708 original size:250 final size:250
Alignment explanation
Indices: 750277--750957 Score: 1253
Period size: 250 Copynumber: 2.7 Consensus size: 250
750267 TTCATCTTTT
* * *
750277 AATTCCAACGATTGGTTCTGTCC-AACCAGATTAGATAACTC-AAGAACACTTCCAGAAGATGCT
1 AATT-CAATGATTGGTTCT-TCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
750340 ATTGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAG
64 ATTGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAG
750405 AACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCAATTCAATGATTGGTTCTGCCAAATC
129 AACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCAATTCAATGATTGGTTCTGCCAAATC
750470 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCA
194 AGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCCA
750528 AATTCAATGATTGGTTCTTCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-
1 AATTCAATGATTGGTTCTTCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
*
750592 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAG
66 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
750657 CACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCAATTCAATGATTGGTTCTGCCAAATCAG
131 CACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCAATTCAATGATTGGTTCTGCCAAATCAG
750722 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
196 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
*
750777 AATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTTCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
750842 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
66 TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
750907 CACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCCAAATTCAATGATTGG
131 CACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCC-AATTCAATGATTGG
750958 ACTAAGATAT
Statistics
Matches: 420, Mismatches: 6, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
249 97 0.23
250 296 0.70
251 27 0.06
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (250 bp):
AATTCAATGATTGGTTCTTCCAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
TGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAAGAA
CACTTCCAGAAGATGCTATTGAGCAAATTCATCTTCCAATTCAATGATTGGTTCTGCCAAATCAG
ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCCA
Found at i:751745 original size:16 final size:18
Alignment explanation
Indices: 751707--751751 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
751697 AATAGAAAAG
*
751707 AATAAATTGAATTTCCAA
1 AATAAATTGAATCTCCAA
751725 AATAAATTGAATCT-C-A
1 AATAAATTGAATCTCCAA
751741 AATAAATTGAA
1 AATAAATTGAA
751752 CTTGAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 12 0.46
17 1 0.04
18 13 0.50
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.31
Consensus pattern (18 bp):
AATAAATTGAATCTCCAA
Found at i:752111 original size:16 final size:14
Alignment explanation
Indices: 752076--752166 Score: 84
Period size: 14 Copynumber: 6.5 Consensus size: 14
752066 CCTTGACCCC
*
752076 CTTTCTTTTTCTTCT
1 CTTT-TTTTTCTTTT
752091 C-TTTTTTTCATTTT
1 CTTTTTTTTC-TTTT
752105 CTATTTTTTTTCTTTT
1 C--TTTTTTTTCTTTT
752121 CTTTTTTCTT-TTTT
1 CTTTTTT-TTCTTTT
*
752135 CTTTTCTTTCTTTT
1 CTTTTTTTTCTTTT
752149 C---TTTTTCTTTT
1 CTTTTTTTTCTTTT
752160 CTTTTTT
1 CTTTTTT
752167 CTTCAAGCAT
Statistics
Matches: 64, Mismatches: 3, Indels: 19
0.74 0.03 0.22
Matches are distributed among these distances:
11 10 0.16
13 8 0.12
14 30 0.47
15 3 0.05
16 5 0.08
17 8 0.12
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (14 bp):
CTTTTTTTTCTTTT
Found at i:752114 original size:17 final size:15
Alignment explanation
Indices: 752087--752164 Score: 88
Period size: 16 Copynumber: 5.1 Consensus size: 15
752077 TTTCTTTTTC
*
752087 TTCTCTTTTTTTCATT
1 TTCTTTTTTTTTC-TT
752103 TTCTATTTTTTTTCTT
1 TTCT-TTTTTTTTCTT
*
752119 TTCTTTTTTCTT-TT
1 TTCTTTTTTTTTCTT
*
752133 TTC-TTTTCTTTCTT
1 TTCTTTTTTTTTCTT
752147 TTCTTTTTCTTTTCTT
1 TTCTTTTT-TTTTCTT
752163 TT
1 TT
752165 TTCTTCAAGC
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
13 6 0.11
14 10 0.19
15 11 0.21
16 18 0.34
17 8 0.15
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (15 bp):
TTCTTTTTTTTTCTT
Found at i:752122 original size:5 final size:5
Alignment explanation
Indices: 752077--752164 Score: 78
Period size: 5 Copynumber: 17.6 Consensus size: 5
752067 CTTGACCCCC
* *
752077 TTTCT TTT-T CTTCT CTTT-T TTTCAT TTTCT ATTTTT TTTCT TTTCT
1 TTTCT TTTCT TTTCT -TTTCT TTTC-T TTTCT -TTTCT TTTCT TTTCT
752123 TTT-T TCTT-T TTTCT TTTC- TTTCT TTTCTT TTTCT TTTCT TTT
1 TTTCT T-TTCT TTTCT TTTCT TTTCT TTTC-T TTTCT TTTCT TTT
752165 TTCTTCAAGC
Statistics
Matches: 70, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
4 14 0.20
5 40 0.57
6 16 0.23
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:752156 original size:39 final size:41
Alignment explanation
Indices: 752077--752170 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 41
752067 CTTGACCCCC
752077 TTTC-TTTTTCTTCTCTTTTTTTCATTTTCTATTTTTTTTCT
1 TTTCTTTTTTCTTCTCTTTTTTTCA-TTTCTATTTTTTTTCT
752118 TTTCTTTTTTCTT-T-TTTCTTTTC-TTTCT-TTTCTTTTTCT
1 TTTCTTTTTTCTTCTCTTT-TTTTCATTTCTATTT-TTTTTCT
752157 TTTCTTTTTTCTTC
1 TTTCTTTTTTCTTC
752171 AAGCATAATA
Statistics
Matches: 49, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
38 3 0.06
39 25 0.51
40 3 0.06
41 10 0.20
42 8 0.16
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (41 bp):
TTTCTTTTTTCTTCTCTTTTTTTCATTTCTATTTTTTTTCT
Found at i:762493 original size:12 final size:14
Alignment explanation
Indices: 762476--762510 Score: 56
Period size: 12 Copynumber: 2.6 Consensus size: 14
762466 CTTGACAGAA
762476 AAATAAATAC-TG-
1 AAATAAATACTTGC
762488 AAATAAATACTTGC
1 AAATAAATACTTGC
762502 AAATAAATA
1 AAATAAATA
762511 AAACATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.60, C:0.09, G:0.06, T:0.26
Consensus pattern (14 bp):
AAATAAATACTTGC
Found at i:762549 original size:18 final size:17
Alignment explanation
Indices: 762502--762551 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
762492 AAATACTTGC
*
762502 AAATAAATAAAACATAT
1 AAATAAATAAAAAATAT
*
762519 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
762537 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
762552 GAAAGAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 3 0.11
17 9 0.33
18 12 0.44
19 3 0.11
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:763313 original size:19 final size:20
Alignment explanation
Indices: 763291--763333 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
763281 ACAATATTTT
763291 AAAAACA-ATAAAATAAATG
1 AAAAACATATAAAATAAATG
763310 -AAAACATATAAAATAAATG
1 AAAAACATATAAAATAAATG
763329 AAAAA
1 AAAAA
763334 ATAAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 12 0.55
20 4 0.18
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (20 bp):
AAAAACATATAAAATAAATG
Done.