genome.fa.s7781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007781.1 Hibiscus syriacus cultivar Beakdansim tig00110064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78383

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8793--8829	15	2.7	15	88	12	53	62	8	5	24	1.44
11021--11106	3	28.7	3	95	0	154	63	1	1	33	1.09
16158--16199	21	2.0	21	90	0	66	23	23	26	26	2.00
16228--16267	20	1.9	21	85	10	55	37	37	12	12	1.81
17039--17087	20	2.5	19	80	6	53	51	6	10	32	1.61
17848--17922	26	2.7	27	89	8	107	41	9	8	41	1.66
18370--18429	30	2.0	28	87	9	84	38	3	16	41	1.65
18370--18429	29	2.0	30	90	6	95	38	3	16	41	1.65
18493--18558	19	3.5	19	87	0	87	40	10	12	36	1.77
22135--22289	67	2.4	64	81	14	185	30	12	12	43	1.80
24407--24495	31	2.8	32	72	16	87	26	16	19	37	1.93
25305--25330	9	2.9	9	100	0	52	23	0	0	76	0.78
28247--28322	35	2.2	35	92	0	125	39	23	1	35	1.63
28720--28967	130	1.9	130	93	0	424	35	14	13	35	1.86
28734--28998	130	2.0	129	81	4	309	39	13	13	33	1.84
29424--29457	16	2.0	18	88	11	54	64	5	2	26	1.30
31062--31178	31	3.7	31	70	10	78	36	4	13	45	1.64
31073--31148	31	2.4	31	80	6	82	34	5	13	47	1.65
32487--32599	56	2.0	56	82	0	136	22	15	17	45	1.85
33005--33040	16	2.2	17	90	5	56	33	8	0	58	1.28
35450--35502	21	2.6	21	84	3	72	37	18	22	20	1.94
48193--48260	29	2.3	30	79	5	93	63	4	7	25	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56199--56265	20	3.3	20	79	4	89	41	17	22	17	1.90
56189--56302	41	2.7	42	90	6	171	43	17	20	18	1.88
56209--56284	21	3.7	20	78	5	89	40	18	23	17	1.91
56295--56346	20	2.6	20	93	0	86	26	28	19	25	1.98
56866--56935	19	3.9	19	71	19	69	47	22	18	11	1.81
56902--56943	19	2.2	19	91	0	66	50	26	14	9	1.73
56947--57107	20	8.8	19	72	16	126	11	21	22	44	1.84
56947--57023	39	2.0	39	84	5	102	9	18	25	46	1.78
56995--57082	33	2.6	33	90	1	131	11	23	25	39	1.88
59165--59231	21	3.2	21	66	6	55	23	35	20	19	1.95
59109--59231	42	2.9	42	80	4	106	22	36	17	23	1.94
61576--61600	12	2.1	12	100	0	50	0	28	0	72	0.86
61775--61828	24	2.2	24	90	0	81	38	20	16	24	1.92
62888--62945	20	2.9	20	94	0	98	37	22	22	17	1.93
62964--63050	19	4.8	19	87	9	130	14	21	17	45	1.84
65053--65118	20	3.5	19	87	6	98	36	25	24	13	1.92
65144--65207	19	3.7	18	72	21	64	12	18	21	46	1.82
65193--65235	20	2.2	20	87	4	61	18	23	20	37	1.94
65201--65246	20	2.3	20	88	0	65	15	21	26	36	1.93
65719--65763	18	2.5	18	85	0	63	15	15	42	26	1.87
67083--67120	20	1.9	20	88	0	58	50	21	15	13	1.78
67635--67712	41	1.9	41	89	0	120	23	16	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67595--67709	20	5.7	20	74	5	88	24	18	22	34	1.96
67698--67794	21	4.7	21	84	2	133	16	25	18	39	1.91
67678--67811	62	2.2	62	82	6	166	18	24	19	37	1.94
67717--67814	41	2.4	41	96	0	178	18	23	18	39	1.92
67698--67811	21	5.6	20	83	3	111	17	25	18	38	1.92
73831--73888	20	2.9	20	84	0	71	25	24	20	29	1.99
77038--77069	2	16.0	2	100	0	64	50	0	0	50	1.00
77292--77355	25	2.5	26	85	14	89	48	14	0	37	1.44

Tables:   1

The End!