Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3900615
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 19
Found at i:1997433 original size:6 final size:6
Alignment explanation
Indices: 1997409--1997506 Score: 70
Period size: 6 Copynumber: 16.3 Consensus size: 6
1997399 AGCGGTCACA
* * * * * *
1997409 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
1997457 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
1997505 GA
1 GA
1997507 TGATCCAAAC
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:1997444 original size:3 final size:3
Alignment explanation
Indices: 1997424--1997510 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
1997414 TGAAGCTGAC
* * * * * ** *
1997424 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
1997472 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1997511 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:1997459 original size:42 final size:42
Alignment explanation
Indices: 1997412--1997502 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
1997402 GGTCACAGAA
*
1997412 GATGAAGCTGACGATGAAGATGACGATGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
* * *
1997454 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
1997496 GATGAAG
1 GATGAAG
1997503 ATGATGATCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (42 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
Found at i:1997510 original size:18 final size:18
Alignment explanation
Indices: 1997409--1997506 Score: 88
Period size: 18 Copynumber: 5.4 Consensus size: 18
1997399 AGCGGTCACA
* *
1997409 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGATGAT
*
1997427 GAAGATGACGATGATGAT
1 GAAGATGAAGATGATGAT
* * * *
1997445 GATGATGACGATGAAGCT
1 GAAGATGAAGATGATGAT
** *
1997463 GGCGATGAAGATGATGAC
1 GAAGATGAAGATGATGAT
* *
1997481 GATGATGATGATGATGAT
1 GAAGATGAAGATGATGAT
1997499 GAAGATGA
1 GAAGATGA
1997507 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGATGAT
Found at i:1999428 original size:184 final size:184
Alignment explanation
Indices: 1998998--1999681 Score: 1275
Period size: 184 Copynumber: 3.7 Consensus size: 184
1998988 GGTAAATTGC
* *
1998998 AATATAACCGGTATAAATATACCGGTCTTATGCGCGAATAGGTCTACAACCTATATCGACACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
* * *
1999063 TTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAG
66 ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
1999128 TGTCGACATTTTACACATCGGAACCCAT-ATTATAATGTAATAGATAATTTTGT
131 TGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
1999181 AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
* *
1999246 ATAATATTTTGTCGGTACTTTATATCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
66 ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
1999311 TGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
131 TGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
1999365 AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
1999430 ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
66 ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
1999495 TGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
131 TGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
1999549 AATATAACC-GTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
*
1999613 ATAATA-TGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACCATTTAAAAAAG
66 ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
1999677 TGTCG
131 TGTCG
1999682 GTAATTTGAA
Statistics
Matches: 490, Mismatches: 10, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
182 62 0.13
183 212 0.43
184 216 0.44
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
AATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTT
ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAAAATGTGTCGATACGATTTAAAAAAG
TGTCGACATTTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
Found at i:2002541 original size:23 final size:23
Alignment explanation
Indices: 2002492--2002543 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
2002482 ATGGTAGCCC
*
2002492 TTATATAATGTAATAGGTATCGT
1 TTATATAATGTAATAGGTATCGG
2002515 TTATATAATGTAATAGGTAGT-GG
1 TTATATAATGTAATAGGTA-TCGG
2002538 TTATAT
1 TTATAT
2002544 TGTAAAGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (23 bp):
TTATATAATGTAATAGGTATCGG
Found at i:2006482 original size:54 final size:54
Alignment explanation
Indices: 2006417--2007098 Score: 866
Period size: 54 Copynumber: 12.7 Consensus size: 54
2006407 TCTCTGGGGG
* * * *
2006417 GCACACGTAGTGCCCATACGGTCGTTCATAAACACT-TTATGAATTCTGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACA-TATGATGAATTCTGTGGGTT
* * *
2006471 GCACACTTAGTGCCTATATGGTTGTTCATCAACATATGATGAATTCCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGGTT
** * *
2006525 GCACACTTAGTGCCTATACTATCGTTCATCAATATATGATGAATTCCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGGTT
* *
2006579 GCACATTTAGTGCCTATACGGTCGCTCATCAACATATGATGAATTAC-GTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATT-CTGTGGGTT
* * *
2006633 GCACACTTAGTGCCTATACAGTCGTTCATCAATATATGATGAATT-TCATGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCT-GTGGGTT
* * * *
2006687 GCACACTTAGTGCTTATATGGTCATTCATCAACATATGATGAATTATGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGGTT
*
2006741 GCACACTCAGTGCCTATACGGTCGTTCATCAACATATGATGAATT-TCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCT-GTGGGTT
** * *
2006795 GCACACTTAGTGTATATACGATCGTTCATCAACATATGATGAATTTTGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGGTT
*
2006849 GCACACTTAGTGCCTATACGATCGTTCATCAACATATGATGAATT-TCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCT-GTGGGTT
* *
2006903 GCACACTTAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGGTT
* * * *
2006957 GCACACTTAGTGCCTATACAGTCATTCATCAACATATAATGCATT-TCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCT-GTGGGTT
*
2007011 GCACACTTAGTGCCTATACGATCGTTCAT---C--ATGATGAATT-TCGTGGGTT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCT-GTGGGTT
** ** * *
2007060 GCATGCTTAGTGTTTATACGGTCATTCATCAATATATGA
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGA
2007099 ATTTAACCAC
Statistics
Matches: 554, Mismatches: 59, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
49 40 0.07
51 1 0.00
53 3 0.01
54 507 0.92
55 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (54 bp):
GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGGTT
Found at i:2006691 original size:162 final size:161
Alignment explanation
Indices: 2006417--2007670 Score: 1377
Period size: 162 Copynumber: 7.9 Consensus size: 161
2006407 TCTCTGGGGG
* * * *
2006417 GCACACGTAGTGCCCATACGGTCGTTCATAAACACT-TTATGAATTCTGTGGGTTGCACACTTAG
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACA-TATGATGAATTC-GTGGGTTGCACACTTAG
** * * *
2006481 TGCCTATATGGTTGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGCCTATACTA
64 TGCCTATACAGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGA
* *
2006546 TCGTTCATCAATATATGATGAATTCCGTGGGTT
129 TCGTTCATCAACATATGATGAATTACGTGGGTT
* *
2006579 GCACATTTAGTGCCTATACGGTCGCTCATCAACATATGATGAATTACGTGGGTTGCACACTTAGT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATT-CGTGGGTTGCACACTTAGT
* * * * *
2006644 GCCTATACAGTCGTTCATCAATATATGATGAATTTCATGGGTTGCACACTTAGTGCTTATATGGT
65 GCCTATACAGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGAT
* *
2006709 CATTCATCAACATATGATGAATTATGTGGGTT
130 CGTTCATCAACATATGATGAATTACGTGGGTT
*
2006741 GCACACTCAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA-TTCGTGGGTTGCACACTTAGT
** *
2006806 GTATATAC-GATCGTTCATCAACATATGATGAATTTTGTGGGTTGCACACTTAGTGCCTATACGA
65 GCCTATACAG-TCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGA
*
2006870 TCGTTCATCAACATATGATGAATTTCGTGGGTT
129 TCGTTCATCAACATATGATGAATTACGTGGGTT
*
2006903 GCACACTTAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATT-CGTGGGTTGCACACTTAGT
* * *
2006968 GCCTATACAGTCATTCATCAACATATAATGCATTTCGTGGGTTGCACACTTAGTGCCTATACGAT
65 GCCTATACAGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGAT
*
2007033 CGTTCAT---C--ATGATGAATTTCGTGGGTT
130 CGTTCATCAACATATGATGAATTACGTGGGTT
** ** * ** * *
2007060 GCATGCTTAGTGTTTATACGGTCATTCATC-A-ATAT-ATGAA-T--T---TAAC-CACAT-GCA
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCGTGGGTTGCACACTTAG-T
* * * * * *** * * *
2007114 ACCTATA-ACTC-TTAATCTACATA--AT-AA-AT-G-CACTT--ACATGTTA-AG-CTATACGG
65 GCCTATACAGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACA-CTTAGTGCCTATACGA
*
2007167 TCGTTCATCAACATATGATGAATTAAGTGGGTT
129 TCGTTCATCAACATATGATGAATTACGTGGGTT
* * * * *
2007200 GCACACTTATTGCATATACGGTCGTTAATCAACATATCATGAATTCTGTAGGTTGCACACTTAGT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTC-GTGGGTTGCACACTTAGT
* * * * * *
2007265 ACCTATACGGTCGTTTATCAACATATGATAAATTTCATGGGTTGCATACTTAGTGCCTATAC-AG
65 GCCTATACAGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGA-
* * *
2007329 TCGTTTATCAACATATGATGAATTTCATGGGTT
129 TCGTTCATCAACATATGATGAATTACGTGGGTT
** * * *
2007362 GCACACTTAGTTTCTATACAGTCTTTCATCAACATATGATGAATTTCGTGGGTTGTACACTTAGT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA-TTCGTGGGTTGCACACTTAGT
* * * * * * *
2007427 GCCTACAC-GATCATTCAACAACATATAATGAATTCCGTGGGTTGCACACTCAGTGCCTGTACGA
65 GCCTATACAG-TCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGA
2007491 TCGTTCATCAACATATGATGAATTACGTGGGTT
129 TCGTTCATCAACATATGATGAATTACGTGGGTT
* * * * *
2007524 GTACACTTAGTGCATATACGGTCTTTCATCAATATATAATGAATTTCGTGGGTTGCACACTTAGT
1 GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA-TTCGTGGGTTGCACACTTAGT
* * * *
2007589 GCCTATACAATCGTTCATCAACATATGATGAA-TTCTGTGGGTTGCACAGTTAGTGTCTATACGG
65 GCCTATACAGTCGTTCATCAACATATGATGAATTTC-GTGGGTTGCACACTTAGTGCCTATACGA
2007653 TCGTTCATCAACATATGA
129 TCGTTCATCAACATATGA
2007671 ATTTAACCAC
Statistics
Matches: 911, Mismatches: 138, Indels: 86
0.80 0.12 0.08
Matches are distributed among these distances:
135 15 0.02
136 4 0.00
137 3 0.00
138 3 0.00
139 1 0.00
140 41 0.05
141 2 0.00
142 6 0.01
143 5 0.01
144 11 0.01
145 4 0.00
146 10 0.01
147 3 0.00
150 3 0.00
151 11 0.01
152 3 0.00
153 11 0.01
154 5 0.01
155 6 0.01
156 3 0.00
157 44 0.05
159 3 0.00
160 3 0.00
161 10 0.01
162 693 0.76
163 8 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (161 bp):
GCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCGTGGGTTGCACACTTAGTG
CCTATACAGTCGTTCATCAACATATGATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGATC
GTTCATCAACATATGATGAATTACGTGGGTT
Found at i:2007231 original size:54 final size:54
Alignment explanation
Indices: 2007159--2007670 Score: 628
Period size: 54 Copynumber: 9.5 Consensus size: 54
2007149 ACATGTTAAG
** *
2007159 CTATACGGTCGTTCATCAACATATGATGAATTAAGTGGGTTGCACACTTATTGC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * * * *
2007213 ATATACGGTCGTTAATCAACATATCATGAATTCTGTAGGTTGCACACTTAGTAC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * * *
2007267 CTATACGGTCGTTTATCAACATATGATAAATTTCATGGGTTGCATACTTAGTGC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * * **
2007321 CTATACAGTCGTTTATCAACATATGATGAATTTCATGGGTTGCACACTTAGTTT
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * *
2007375 CTATACAGTCTTTCATCAACATATGATGAATTTCGTGGGTTGTACACTTAGTGC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * * * *
2007429 CTACACGATCATTCAACAACATATAATGAATTCCGTGGGTTGCACACTCAGTGC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * *
2007483 CTGTACGATCGTTCATCAACATATGATGAATTACGTGGGTTGTACACTTAGTGC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
* * * * *
2007537 ATATACGGTCTTTCATCAATATATAATGAATTTCGTGGGTTGCACACTTAGTGC
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
** * * *
2007591 CTATACAATCGTTCATCAACATATGATGAATTCTGTGGGTTGCACAGTTAGTGT
1 CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
2007645 CTATACGGTCGTTCATCAACATATGA
1 CTATACGGTCGTTCATCAACATATGA
2007671 ATTTAACCAC
Statistics
Matches: 392, Mismatches: 66, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 392 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (54 bp):
CTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACTTAGTGC
Found at i:2013668 original size:54 final size:54
Alignment explanation
Indices: 2012966--2013660 Score: 860
Period size: 54 Copynumber: 12.9 Consensus size: 54
2012956 ACTTTATAAG
* * * * * *
2012966 TTCTTTGGGGTGCACACGTAGTGCCAATACCGTCGTTCATAAACACT-T-ATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACA-TATGATGAA
* *
2013019 TTCTGTGGGTTGTACACTTAGTGTCTATACGGTCGTTCATCAACATATGATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * * * *
2013073 TTCCGTGGGTTACACACTTAGTGCCTATATGGTCGTTTATCAATATATGATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * * * * *
2013127 TT-TCGTGGGTTGCACATTTAATGCTTATATGATCGTTCATCAATATATGATGAA
1 TTCT-GTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * *
2013181 TTCTGTGGGTTGCACACTTAGTGTCTATACGGTCGTTCATCAATATATGAAGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * *** *
2013235 TTCCGTGGGTTGCACACTTAGTGTCTATATATTCGTTCATCAACATATGATAAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * *
2013289 TTATGTGGGTTGCACATTTAGTTCCTATACGGTCGTTCATCAACATATGATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * *
2013343 TT-TCATAGGTTGCACACTTAGTGCCTATACGGTCGTTCATTAACATATGATGAA
1 TTCT-GTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* *
2013397 TT-TCGTGGGTTGCACACTTAGTACCTGTACGGTCGTTCATCAACATATGATGAA
1 TTCT-GTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* ** * *
2013451 TTCCGTGGGTTGCACACTTAGTGTTTATATGGTCGTTCATTAACATATGATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * *
2013505 TTCTGTAGGTTGCACACCTAATGCCTATACGGTCGTTCATCAACATATGATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* * * * *
2013559 TTCCGTGGGTTGTACAATTACTGCCTATACGGTCGTTCATCAACATATAATGAA
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
* *
2013613 TTCTGTGGGTTGCACACTTAGTGTCTATACGGTCGTTCATTAACATAT
1 TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATAT
2013661 AACGAATTAT
Statistics
Matches: 553, Mismatches: 83, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
52 1 0.00
53 39 0.07
54 512 0.93
55 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (54 bp):
TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA
Found at i:2014037 original size:22 final size:22
Alignment explanation
Indices: 2014011--2014065 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
2014001 CCCTACCATT
2014011 GTATCGATACTTGTATATTGTG
1 GTATCGATACTTGTATATTGTG
2014033 GTATCGATACTTGTATATTGTG
1 GTATCGATACTTGTATATTGTG
*
2014055 GTACCGATACT
1 GTATCGATACT
2014066 CTATTCAGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.42
Consensus pattern (22 bp):
GTATCGATACTTGTATATTGTG
Found at i:2015644 original size:208 final size:209
Alignment explanation
Indices: 2015286--2015702 Score: 827
Period size: 208 Copynumber: 2.0 Consensus size: 209
2015276 TGAATCTAGG
2015286 ACTCAGCTTTCCTTTGTGCCCAAATCTCTAACCTTTCTTCCAGGGCAATACTTTTAGAAATACCT
1 ACTCAGCTTTCCTTTGTGCCCAAATCTCTAACCTTTCTTCCAGGGCAATACTTTTAGAAATACCT
2015351 TGTCTCCTACTTGAAATTCAATTTCTTTTCTTTTCAAATCTGTATAAGACTTCTGGCGATAGGAG
66 TGTCTCCTACTTGAAATTCAATTTCTTTTCTTTTCAAATCTGTATAAGACTTCTGGCGATAGGAG
2015416 GCTATCTTTAGATTGTCCTGAATAA-TTTCACTTTCTCATCAATTTATTTCATCAAATCCGAGCC
131 GCTATCTTTAGATTGTCCTGAATAATTTTCACTTTCTCATCAATTTATTTCATCAAATCCGAGCC
2015480 AACTAGGTCTCGAT
196 AACTAGGTCTCGAT
2015494 ACTCAGCTTTCCTTTGTGCCCAAATCTCTAACCTTTCTTCCAGGGCAATACTTTTAGAAATACCT
1 ACTCAGCTTTCCTTTGTGCCCAAATCTCTAACCTTTCTTCCAGGGCAATACTTTTAGAAATACCT
2015559 TGTCTCCTACTTGAAATTCAATTTCTTTTCTTTTCAAATCTGTATAAGACTTCTGGCGATAGGAG
66 TGTCTCCTACTTGAAATTCAATTTCTTTTCTTTTCAAATCTGTATAAGACTTCTGGCGATAGGAG
2015624 GCTATCTTTAGATTGTCCTGAATAATTTTCACTTTCTCATCAATTTATTTCATCAAATCCGAGCC
131 GCTATCTTTAGATTGTCCTGAATAATTTTCACTTTCTCATCAATTTATTTCATCAAATCCGAGCC
2015689 AACTAGGTCTCGAT
196 AACTAGGTCTCGAT
2015703 CTTTTAGTTC
Statistics
Matches: 208, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
208 155 0.75
209 53 0.25
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (209 bp):
ACTCAGCTTTCCTTTGTGCCCAAATCTCTAACCTTTCTTCCAGGGCAATACTTTTAGAAATACCT
TGTCTCCTACTTGAAATTCAATTTCTTTTCTTTTCAAATCTGTATAAGACTTCTGGCGATAGGAG
GCTATCTTTAGATTGTCCTGAATAATTTTCACTTTCTCATCAATTTATTTCATCAAATCCGAGCC
AACTAGGTCTCGAT
Found at i:2018206 original size:33 final size:33
Alignment explanation
Indices: 2018161--2018225 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
2018151 AATTTTCTTA
2018161 CCTTTATATTTAGTTTTCGATATCTAAACACAG
1 CCTTTATATTTAGTTTTCGATATCTAAACACAG
*
2018194 CCTTTATCTTTAGTTTTCGATATCTAAACACA
1 CCTTTATATTTAGTTTTCGATATCTAAACACA
2018226 TCCAAAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (33 bp):
CCTTTATATTTAGTTTTCGATATCTAAACACAG
Found at i:2019201 original size:54 final size:54
Alignment explanation
Indices: 2019142--2019886 Score: 984
Period size: 54 Copynumber: 13.7 Consensus size: 54
2019132 TTCTTTGTGG
* *
2019142 TGCACACGTAGTGCCGATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
* * * * * *
2019196 TGCACACGTAGTGCTTAGACGTTCGTTCATCAACATATGATAAATTTTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
* * *
2019250 TGTC-CACTTAGTACCTATACGGTCATTCATCAATATATGATGAA-TTCTGTGGGT
1 TG-CACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTC-GTGGGT
* * ** *
2019304 TGTACACTTAGTTCCTATACGGTATTTCATCAACATATGATGAATTCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
* * * *
2019358 TGCACACTTAGGGCCTATACGGTCATTCATCAATATATGAT-AAATTCTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTC-GTGGGT
* * * *
2019412 TGCACACTCAGTGCCTATACGGGCGTTCATTAACATATGATGAATTCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
* *
2019466 TGCACACTTA-TGCCTATACGGGCGTTCATCAGCATATGATGAA-TTCTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTC-GTGGGT
2019519 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA-TTCTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTC-GTGGGT
*
2019573 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
2019627 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAA-TTCTGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTC-GTGGGT
* * *
2019681 TGCATACTTAGTGCCTATACGGTCGGTCGTTCATCAACATATGATGAATTCCATGGGT
1 TGCACACTTAGTGCCTATA----CGGTCGTTCATCAACATATGATGAATTTCGTGGGT
* * * *
2019739 TGCACACTTAGTGCGTATATGGTTGTTCATCAACATATGATGAA-TTCTATGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTC-GTGGGT
* *
2019793 TGCACACTTAGTGCCTATACGATCGTTCATCAACATATGATGAATTCCGTGGGT
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
* * *
2019847 TGTACACTTAGTGCCTATACAGTCATTCATCAACATATGA
1 TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGA
2019887 ATTTAACCAC
Statistics
Matches: 611, Mismatches: 63, Indels: 34
0.86 0.09 0.05
Matches are distributed among these distances:
52 2 0.00
53 57 0.09
54 492 0.81
55 11 0.02
58 47 0.08
59 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (54 bp):
TGCACACTTAGTGCCTATACGGTCGTTCATCAACATATGATGAATTTCGTGGGT
Found at i:2021470 original size:13 final size:13
Alignment explanation
Indices: 2021452--2021476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2021442 GGTTTAGGTA
2021452 CATTACAAATACC
1 CATTACAAATACC
2021465 CATTACAAATAC
1 CATTACAAATAC
2021477 AATCAAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (13 bp):
CATTACAAATACC
Found at i:2022864 original size:30 final size:31
Alignment explanation
Indices: 2022828--2022914 Score: 113
Period size: 30 Copynumber: 2.8 Consensus size: 31
2022818 TCACTAACTT
* *
2022828 ACTAACATTCTAACTTTTATTTTT-TTTTGA
1 ACTAACATTCTAACTTTTATTTTTCGTTCGA
*
2022858 ACTAACATTCTAACATTTATTTTATCGTTCGA
1 ACTAACATTCTAACTTTTATTTT-TCGTTCGA
*
2022890 ACTAACATACTAACTTTTTATTTTT
1 ACTAACATTCTAAC-TTTTATTTTT
2022915 ATTGTTCTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 22 0.45
31 1 0.02
32 18 0.37
33 8 0.16
ACGTcount: A:0.30, C:0.16, G:0.03, T:0.51
Consensus pattern (31 bp):
ACTAACATTCTAACTTTTATTTTTCGTTCGA
Found at i:2022907 original size:62 final size:67
Alignment explanation
Indices: 2022828--2022949 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 67
2022818 TCACTAACTT
*
2022828 ACTAACATTCTAAC-TTTTATTTTT-TT-TT-GAACTAACATT-CTAACA-TTTATTTTATCGTT
1 ACTAACATACTAACTTTTTATTTTTATTGTTCGAACTAAC-TTACTAACATTTTATTTTATCGTT
2022887 CGA
65 CGA
**
2022890 ACTAACATACTAACTTTTTATTTTTATTGTTCTTACTAACTTACTAACATTTTATTTTAT
1 ACTAACATACTAACTTTTTATTTTTATTGTTCGAACTAACTTACTAACATTTTATTTTAT
2022950 TGCACAAACT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
62 13 0.25
63 10 0.20
64 2 0.04
65 4 0.08
66 12 0.24
67 10 0.20
ACGTcount: A:0.30, C:0.16, G:0.03, T:0.52
Consensus pattern (67 bp):
ACTAACATACTAACTTTTTATTTTTATTGTTCGAACTAACTTACTAACATTTTATTTTATCGTTC
GA
Found at i:2022928 original size:34 final size:32
Alignment explanation
Indices: 2022828--2022951 Score: 135
Period size: 34 Copynumber: 3.8 Consensus size: 32
2022818 TCACTAACTT
* *
2022828 ACTAACATTCTAACTTTTATTTT-TT-TTTGA
1 ACTAACATACTAACTTTTATTTTATTGTTCGA
* * *
2022858 ACTAACATTCTAACATTTATTTTATCGTTCGA
1 ACTAACATACTAACTTTTATTTTATTGTTCGA
**
2022890 ACTAACATACTAACTTTTTATTTTTATTGTTCTT
1 ACTAACATACTAAC-TTTTA-TTTTATTGTTCGA
*
2022924 ACTAACTTACTAACATTTTATTTTATTG
1 ACTAACATACTAAC-TTTTATTTTATTG
2022952 CACAAACTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 22 0.28
31 1 0.01
32 17 0.21
33 12 0.15
34 28 0.35
ACGTcount: A:0.29, C:0.15, G:0.04, T:0.52
Consensus pattern (32 bp):
ACTAACATACTAACTTTTATTTTATTGTTCGA
Found at i:2023159 original size:30 final size:32
Alignment explanation
Indices: 2023110--2023178 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 32
2023100 TTTGATTTTA
*
2023110 TTTATTTTTCTAGCACTTTAA-ATTCCAGTAT
1 TTTATTTTTATAGCACTTTAATATTCCAGTAT
* * *
2023141 TTTATTTTTATA-CCCTTTAATTTTCCTGTAT
1 TTTATTTTTATAGCACTTTAATATTCCAGTAT
2023172 TTTATTT
1 TTTATTT
2023179 CAGTCCCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 7 0.21
31 26 0.79
ACGTcount: A:0.22, C:0.14, G:0.04, T:0.59
Consensus pattern (32 bp):
TTTATTTTTATAGCACTTTAATATTCCAGTAT
Found at i:2023196 original size:30 final size:30
Alignment explanation
Indices: 2023125--2023210 Score: 86
Period size: 30 Copynumber: 2.8 Consensus size: 30
2023115 TTTTCTAGCA
* *
2023125 CTTTAAATTCCAGTATTTTATTTTTATACC
1 CTTTAATTTCCAGTATTTTATTTTCATACC
*
2023155 CTTTAATTTTCCTGTATTTTA-TTTCAGT-CC
1 CTTTAA-TTTCCAGTATTTTATTTTCA-TACC
* *
2023185 CTTTTAATTTCCAGCATTTAATTTTC
1 C-TTTAATTTCCAGTATTTTATTTTC
2023211 TGTATTTTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
30 24 0.52
31 22 0.48
ACGTcount: A:0.22, C:0.19, G:0.05, T:0.55
Consensus pattern (30 bp):
CTTTAATTTCCAGTATTTTATTTTCATACC
Found at i:2026472 original size:27 final size:27
Alignment explanation
Indices: 2026437--2026490 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
2026427 CATTTTTTAA
*
2026437 AGCTAAAATAAAATGGGTATATTCTTT
1 AGCTAAAATAAAATGGGTAAATTCTTT
*
2026464 AGCTAAAATAAAATGGTTAAATTCTTT
1 AGCTAAAATAAAATGGGTAAATTCTTT
2026491 CTCAAATCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (27 bp):
AGCTAAAATAAAATGGGTAAATTCTTT
Found at i:2029340 original size:2 final size:2
Alignment explanation
Indices: 2029333--2029359 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2029323 TAACTATTAG
2029333 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2029360 TAATTATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2032363 original size:43 final size:43
Alignment explanation
Indices: 2032316--2032397 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
2032306 AATTAGCAGC
* * * *
2032316 GTTTGTTTCAAAAACGTCACTACACAGCTTGACCTTTTGCGGT
1 GTTTGTTACAAAAACGCCACTACAAAGCTTGACATTTTGCGGT
* *
2032359 GTTTGTTACCAAAATGCCACTACAAAGCTTGACATTTTG
1 GTTTGTTACAAAAACGCCACTACAAAGCTTGACATTTTG
2032398 TGGCTTTTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (43 bp):
GTTTGTTACAAAAACGCCACTACAAAGCTTGACATTTTGCGGT
Found at i:2036360 original size:21 final size:21
Alignment explanation
Indices: 2036331--2036372 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2036321 ATTTATCCTG
*
2036331 AAGGAAAATGAGTTACTTTTT
1 AAGGAAAATGAGTTAATTTTT
*
2036352 AAGGTAAATGAGTTAATTTTT
1 AAGGAAAATGAGTTAATTTTT
2036373 CCGACTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
AAGGAAAATGAGTTAATTTTT
Found at i:2039961 original size:3 final size:3
Alignment explanation
Indices: 2039953--2040041 Score: 99
Period size: 3 Copynumber: 29.7 Consensus size: 3
2039943 CTTTTAAATT
* ** *
2039953 TTA TTA TTA TTA CTA TTA AAA TTA TTA TTA TTA TTA TTA TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
2040001 TTA TTA TTA TTA TTG TTA ATA TTA TTA CTA TT- TTA CTTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT
2040042 TTTTTCAAAC
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
2 2 0.03
3 65 0.93
4 3 0.04
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:2047246 original size:175 final size:174
Alignment explanation
Indices: 2046955--2047307 Score: 697
Period size: 175 Copynumber: 2.0 Consensus size: 174
2046945 ACTTAATTTC
2046955 AGAAACTATATCTTTAAACAATCCAATCAATTCCTTGAATTAGAACTCACCAAAGCTTTTTGTAA
1 AGAAACTATATCTTTAAACAATCCAATCAATTCCTTGAATTAGAACTCACCAAAGCTTTTTGTAA
2047020 CCTTTATAGCTGTTATTTTGCATTCGCTAAACAAAAGTGATTCATCACCAAAAAAAAAAAAAGGT
66 CCTTTATAGCTGTTATTTTGCATTCGCTAAACAAAAGTGATTCATCACC-AAAAAAAAAAAAGGT
2047085 TCTGTTTTAATCCAAGTTTTATTTACTAGTTACAGACTTCAATTA
130 TCTGTTTTAATCCAAGTTTTATTTACTAGTTACAGACTTCAATTA
2047130 AGAAACTATATCTTTAAACAATCCAATCAATTCCTTGAATTAGAACTCACCAAAGCTTTTTGTAA
1 AGAAACTATATCTTTAAACAATCCAATCAATTCCTTGAATTAGAACTCACCAAAGCTTTTTGTAA
2047195 CCTTTATAGCTGTTATTTTGCATTCGCTAAACAAAAGTGATTCATCACCAAAAAAAAAAAAGGTT
66 CCTTTATAGCTGTTATTTTGCATTCGCTAAACAAAAGTGATTCATCACCAAAAAAAAAAAAGGTT
2047260 CTGTTTTAATCCAAGTTTTATTTACTAGTTACAGACTTCAATTA
131 CTGTTTTAATCCAAGTTTTATTTACTAGTTACAGACTTCAATTA
2047304 AGAA
1 AGAA
2047308 GTGTAATCAA
Statistics
Matches: 178, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
174 64 0.36
175 114 0.64
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (174 bp):
AGAAACTATATCTTTAAACAATCCAATCAATTCCTTGAATTAGAACTCACCAAAGCTTTTTGTAA
CCTTTATAGCTGTTATTTTGCATTCGCTAAACAAAAGTGATTCATCACCAAAAAAAAAAAAGGTT
CTGTTTTAATCCAAGTTTTATTTACTAGTTACAGACTTCAATTA
Found at i:2057044 original size:32 final size:32
Alignment explanation
Indices: 2056974--2057051 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 32
2056964 AAGAACTCAT
* * * *
2056974 GTCACATGTC-AAAAGTGATCACATGACACAT
1 GTCATATGTCAAAAAGTGATCACATAACAAAC
* *
2057005 GTTATATGTCAAAAAGTGATGACATAACAAAC
1 GTCATATGTCAAAAAGTGATCACATAACAAAC
*
2057037 GTCATATGTTAAAAA
1 GTCATATGTCAAAAA
2057052 AGGTGATAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
31 8 0.21
32 30 0.79
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (32 bp):
GTCATATGTCAAAAAGTGATCACATAACAAAC
Found at i:2063164 original size:2 final size:2
Alignment explanation
Indices: 2063124--2063155 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2063114 TGTATAAGTG
2063124 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2063156 GTTTATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2063390 original size:17 final size:17
Alignment explanation
Indices: 2063370--2063402 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
2063360 AATGAGCTAT
2063370 GTGAA-TAAATGAGAAAA
1 GTGAATTAAATG-GAAAA
2063387 GTGAATTAAATGGAAA
1 GTGAATTAAATGGAAA
2063403 TGTGCCAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (17 bp):
GTGAATTAAATGGAAAA
Found at i:2064011 original size:13 final size:14
Alignment explanation
Indices: 2063984--2064012 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2063974 AGTAAATAAG
2063984 AATTGAGATTAAAT
1 AATTGAGATTAAAT
2063998 AATTGAGA-TAAAT
1 AATTGAGATTAAAT
2064011 AA
1 AA
2064013 AGAGTACACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (14 bp):
AATTGAGATTAAAT
Found at i:2067283 original size:17 final size:18
Alignment explanation
Indices: 2067251--2067284 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2067241 TAAATCAAAG
2067251 GATTAAAGAGTTAAGAGA
1 GATTAAAGAGTTAAGAGA
2067269 GATTAAAGA-TTAAGAG
1 GATTAAAGAGTTAAGAG
2067285 TTTTTGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (18 bp):
GATTAAAGAGTTAAGAGA
Found at i:2068201 original size:2 final size:2
Alignment explanation
Indices: 2068165--2068192 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2068155 GGTATAAGTG
2068165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2068193 GTTTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2069013 original size:13 final size:14
Alignment explanation
Indices: 2068986--2069014 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2068976 AGTAAATAAG
2068986 AATTGAGATTAAAT
1 AATTGAGATTAAAT
2069000 AATTGAGA-TAAAT
1 AATTGAGATTAAAT
2069013 AA
1 AA
2069015 AGAGTACATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (14 bp):
AATTGAGATTAAAT
Found at i:2072414 original size:24 final size:23
Alignment explanation
Indices: 2072378--2072457 Score: 78
Period size: 24 Copynumber: 3.6 Consensus size: 23
2072368 AAATATATTA
*
2072378 ATATTTTAAAATAATTAAAATAAT
1 ATATTTTATAATAATT-AAATAAT
**
2072402 ATATTTTATAATAATT---TTTT
1 ATATTTTATAATAATTAAATAAT
*
2072422 ATATTTT-TAATAATTAAAGAAT
1 ATATTTTATAATAATTAAATAAT
2072444 ATATTTTAATAATA
1 ATATTTT-ATAATA
2072458 TAAAAATAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 8 0.18
20 9 0.20
22 8 0.18
24 20 0.44
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
ATATTTTATAATAATTAAATAAT
Found at i:2072450 original size:21 final size:22
Alignment explanation
Indices: 2072421--2072465 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
2072411 AATAATTTTT
2072421 TATATTTTTAATAAT-TAAAGAA
1 TATATTTTTAATAATATAAA-AA
2072443 TATA-TTTTAATAATATAAAAA
1 TATATTTTTAATAATATAAAAA
2072464 TA
1 TA
2072466 AAATCCCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TATATTTTTAATAATATAAAAA
Found at i:2074262 original size:25 final size:23
Alignment explanation
Indices: 2074234--2074279 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
2074224 AGAAATTAGG
2074234 ATTTTTTTAAAATATAATATTTTTA
1 ATTTTTTTAAAATA-AA-ATTTTTA
2074259 ATTTTTTTAAAATAAAATTTT
1 ATTTTTTTAAAATAAAATTTT
2074280 AAAATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 5 0.24
24 2 0.10
25 14 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
ATTTTTTTAAAATAAAATTTTTA
Found at i:2074273 original size:23 final size:25
Alignment explanation
Indices: 2074234--2074279 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
2074224 AGAAATTAGG
*
2074234 ATTTTTTTAAAATATAATATTTTTA
1 ATTTTTTTAAAATATAAAATTTTTA
2074259 ATTTTTTT-AAA-ATAAAATTTT
1 ATTTTTTTAAAATATAAAATTTT
2074280 AAAATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 3 0.15
25 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTTTAAAATATAAAATTTTTA
Found at i:2078145 original size:21 final size:21
Alignment explanation
Indices: 2078119--2078214 Score: 174
Period size: 21 Copynumber: 4.6 Consensus size: 21
2078109 GATTTACATA
*
2078119 TTCGCATTGCGATAGTCAAAG
1 TTCGCATTGCGATAGTCGAAG
2078140 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
2078161 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
2078182 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
*
2078203 TTCGCGTTGCGA
1 TTCGCATTGCGA
2078215 ATCTGGAAAC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 73 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCGAAG
Found at i:2079538 original size:26 final size:26
Alignment explanation
Indices: 2079507--2079558 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2079497 CTTTGTATTC
2079507 ATCATTAATATCTTCATTTTCACCAT
1 ATCATTAATATCTTCATTTTCACCAT
2079533 ATCATTAATATCTTCATTTTCACCAT
1 ATCATTAATATCTTCATTTTCACCAT
2079559 GACCAGCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (26 bp):
ATCATTAATATCTTCATTTTCACCAT
Found at i:2088395 original size:17 final size:18
Alignment explanation
Indices: 2088373--2088410 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
2088363 AGCACATATC
2088373 AAAGC-AGAAAA-AGAAAG
1 AAAGCAAGAAAAGA-AAAG
2088390 AAAGCAAGAAAAGAAAAG
1 AAAGCAAGAAAAGAAAAG
2088408 AAA
1 AAA
2088411 AGGCAAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 13 0.68
19 1 0.05
ACGTcount: A:0.74, C:0.05, G:0.21, T:0.00
Consensus pattern (18 bp):
AAAGCAAGAAAAGAAAAG
Found at i:2097080 original size:15 final size:15
Alignment explanation
Indices: 2097062--2097167 Score: 58
Period size: 13 Copynumber: 6.9 Consensus size: 15
2097052 TATAAGTTTA
2097062 TATATAAACTATATTT
1 TATATAAACTATA-TT
*
2097078 ATATTATAAACTAGA--
1 -TA-TATAAACTATATT
* *
2097093 TATATAAATTATGTT
1 TATATAAACTATATT
*
2097108 TATATGAACTATATATAT
1 TATATAAAC--TATAT-T
2097126 ATATATAAACTATA--
1 -TATATAAACTATATT
* *
2097140 TATGTAAACTATATA
1 TATATAAACTATATT
*
2097155 TGTATAAACTATA
1 TATATAAACTATA
2097168 AAAAGTATAT
Statistics
Matches: 69, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
13 20 0.29
14 2 0.03
15 18 0.26
17 10 0.14
18 11 0.16
19 8 0.12
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (15 bp):
TATATAAACTATATT
Found at i:2097098 original size:18 final size:17
Alignment explanation
Indices: 2097060--2097098 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
2097050 AATATAAGTT
* *
2097060 TATATATAAACTATATT
1 TATATATAAACTAGATA
2097077 TATATTATAAACTAGATA
1 TATA-TATAAACTAGATA
2097095 TATA
1 TATA
2097099 AATTATGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (17 bp):
TATATATAAACTAGATA
Found at i:2097124 original size:13 final size:13
Alignment explanation
Indices: 2097123--2097167 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
2097113 GAACTATATA
2097123 TATATATATAAAC
1 TATATATATAAAC
*
2097136 TATATATGTAAAC
1 TATATATATAAAC
2097149 TATATATGTATAAAC
1 TATATA--TATAAAC
2097164 TATA
1 TATA
2097168 AAAAGTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 18 0.64
15 10 0.36
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:2097139 original size:28 final size:28
Alignment explanation
Indices: 2097108--2097167 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
2097098 AAATTATGTT
*
2097108 TATATGAACTATA-TATATATATATAAAC
1 TATAT-AACTAAACTATATATATATAAAC
** *
2097136 TATATATGTAAACTATATATGTATAAAC
1 TATATAACTAAACTATATATATATAAAC
2097164 TATA
1 TATA
2097168 AAAAGTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (28 bp):
TATATAACTAAACTATATATATATAAAC
Found at i:2097232 original size:17 final size:17
Alignment explanation
Indices: 2097193--2097230 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
2097183 ATAAACTATA
2097193 ATTTATATTAATATAGT
1 ATTTATATTAATATAGT
2097210 ATTTATATATATATATA-T
1 ATTTATAT-TA-ATATAGT
2097228 ATT
1 ATT
2097231 ATTCAAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 6 0.32
19 5 0.26
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTATATTAATATAGT
Found at i:2097364 original size:19 final size:20
Alignment explanation
Indices: 2097342--2097384 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
2097332 GAGAATATAA
2097342 GGAAATTGAG-AAGTTAGAG
1 GGAAATTGAGAAAGTTAGAG
* *
2097361 GGAAATTGGGAAATTTAGAG
1 GGAAATTGAGAAAGTTAGAG
2097381 GGAA
1 GGAA
2097385 TGGAAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (20 bp):
GGAAATTGAGAAAGTTAGAG
Found at i:2097726 original size:42 final size:42
Alignment explanation
Indices: 2097575--2098102 Score: 366
Period size: 40 Copynumber: 12.8 Consensus size: 42
2097565 AAAATGGGTT
* ** * * * *
2097575 TTTAGCGGCGTTTTTTGAACAAACGCCGCTAAATACT-ATAG
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * ** *
2097616 TTTAGTGGCGTTTTCA-TATAAACGCCGCTAATTACT-ATAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * *
2097656 TTTAGCGGCATTTT-TGTACAAACGCCGCTAAAGACTCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * * * *
2097697 TCTAGTGGCATTTTAAGCACAAACGCCGCTAAAGGCCCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * * ** *
2097739 ATTAGTGGCGTTTTCA-TATAAACGCCGCTAATTACT-ATAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * * * *
2097779 TTTAGTGGCATTTT-TGTACAAATGCCGCTAAAAACTCATAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * * * * *
2097820 TTTAGCGGCGTTCTAAGTACAATCGTCGCTAAAGTCCCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * * *
2097862 ATTA--GACGTTTTAAGTACAAACGCCACTAAAGTACTTGTA-
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAG-ACTCGTAC
* * * * *
2097902 TTTAGCGGCATTTTTA-TACAAACGACGATAAAGACTCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* *
2097943 TTTAGTGGTGTTTT-A-TACAAACGCCGCTAAATACTCGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
* * * *
2097983 TTTAGTGGCGTTTTAAGCACAAACTCCACTAAATG-CTTGTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAA-GACTCGTAC
* * * * *
2098025 TTTAGTAGCGTTTTAAGCACAAACACCGCTAAATAAAT-GTAC
1 TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAA-GACTCGTAC
* *
2098067 TTTAGTGGCGTTTGTATATATATAAACGCCGCTAAA
1 TTTAGTGGCGTTT-TA-A-GTACAAACGCCGCTAAA
2098103 TATTTAGTCT
Statistics
Matches: 382, Mismatches: 88, Indels: 30
0.76 0.18 0.06
Matches are distributed among these distances:
40 148 0.39
41 87 0.23
42 130 0.34
43 3 0.01
44 1 0.00
45 13 0.03
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (42 bp):
TTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACTCGTAC
Found at i:2097764 original size:123 final size:123
Alignment explanation
Indices: 2097617--2097996 Score: 464
Period size: 123 Copynumber: 3.1 Consensus size: 123
2097607 ATACTATAGT
2097617 TTAGTGGCGTTTTCATATAAACGCCGCTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCC
1 TTAGTGGCGTTTTCATATAAACGCCGCTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCC
* * * *
2097682 GCTAAAGACTCGTACTCTAGTGGCATTTTAAGCACAAACGCCGCTAAAGGCCCGTACA
66 GCTAAAGACTCGTACTTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACCCGTACA
* *
2097740 TTAGTGGCGTTTTCATATAAACGCCGCTAATTACTATACTTTAGTGGCATTTTTGTACAAATGCC
1 TTAGTGGCGTTTTCATATAAACGCCGCTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCC
* * * * * * *
2097805 GCTAAAAACTCATACTTTAGCGGCGTTCTAAGTACAATCGTCGCTAAAGTCCCGTACA
66 GCTAAAGACTCGTACTTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACCCGTACA
* * * * * * *
2097863 TTA--GACGTTTTAAGTACAAACGCCACTAAAGTACTTGTA-TTTAGCGGCATTTTTATACAAAC
1 TTAGTGGCGTTTTCA-TATAAACGCCGCT-AATTAC-TATACTTTAGCGGCATTTTTGTACAAAC
* * * * * *
2097925 GACGATAAAGACTCGTACTTTAGTGGTGTTTT-A-TACAAACGCCGCTAAATACTCGTACT
63 GCCGCTAAAGACTCGTACTTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACCCGTACA
2097984 TTAGTGGCGTTTT
1 TTAGTGGCGTTTT
2097997 AAGCACAAAC
Statistics
Matches: 217, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
121 31 0.14
122 12 0.06
123 171 0.79
124 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (123 bp):
TTAGTGGCGTTTTCATATAAACGCCGCTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCC
GCTAAAGACTCGTACTTTAGTGGCGTTTTAAGTACAAACGCCGCTAAAGACCCGTACA
Found at i:2097876 original size:163 final size:162
Alignment explanation
Indices: 2097595--2098015 Score: 373
Period size: 163 Copynumber: 2.6 Consensus size: 162
2097585 TTTTTTGAAC
* * * **
2097595 AAACGCCGCTAAATACTATAGTTTAGTGGCGTTTTCATATAAACGCCGCTAATTACTATACTTTA
1 AAACGCCGCTAAATACTATACTTTAGTGGCATTTTCATACAAACGCCGCTAAAAACTATACTTTA
** * * *
2097660 GCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTACTCTAGTGGCATTTTAAGCACAAACGCCG
66 GCGGCATTTAAGTACAAACGCCGCTAAAGACCCGTACTCTAG-GACATTTTAAGCACAAACGCCA
2097725 CTAAAGGCCCGTACATTAGTGGCGTTTTCATAT
130 CTAAAGGCCCGTACATTAGTGGCGTTTTCATAT
* ** *
2097758 AAACGCCGCTAATTACTATACTTTAGTGGCATTTTTGTACAAATGCCGCTAAAAACTCATACTTT
1 AAACGCCGCTAAATACTATACTTTAGTGGCATTTTCATACAAACGCCGCTAAAAACT-ATACTTT
* * * * * *
2097823 AGCGGCGTTCTAAGTACAATCGTCGCTAAAGTCCCGTACAT-TA-GACGTTTTAAGTACAAACGC
65 AGCGGCATT-TAAGTACAAACGCCGCTAAAGACCCGTAC-TCTAGGACATTTTAAGCACAAACGC
* ** * * * * *
2097886 CACTAAAGTACTTGTA-TTTAGCGGCATTTTTATAC
128 CACTAAAG-GCCCGTACATTAGTGGCGTTTTCATAT
* * * * ** * *
2097921 AAACGACGATAAAGACTCGTACTTTAGTGGTGTTTT-ATACAAACGCCGCTAAATACTCGTACTT
1 AAACGCCGCTAAATACT-ATACTTTAGTGGCATTTTCATACAAACGCCGCTAAAAACT-ATACTT
* * * * *
2097985 TAGTGGCGTTTTAAGCACAAACTCCACTAAA
64 TAGCGGC-ATTTAAGTACAAACGCCGCTAAA
2098016 TGCTTGTACT
Statistics
Matches: 206, Mismatches: 46, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
163 144 0.70
164 36 0.17
165 25 0.12
166 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (162 bp):
AAACGCCGCTAAATACTATACTTTAGTGGCATTTTCATACAAACGCCGCTAAAAACTATACTTTA
GCGGCATTTAAGTACAAACGCCGCTAAAGACCCGTACTCTAGGACATTTTAAGCACAAACGCCAC
TAAAGGCCCGTACATTAGTGGCGTTTTCATAT
Found at i:2098015 original size:123 final size:122
Alignment explanation
Indices: 2097575--2098014 Score: 433
Period size: 123 Copynumber: 3.6 Consensus size: 122
2097565 AAAATGGGTT
* * * ** ** * *
2097575 TTTAGCGGCGTTTTTTGAACAAACGCCGCTAAATA-CTATAGTTTAGTGGCGTTTTCATATAAAC
1 TTTAGTGGCG-TTTTAGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAATACAAAC
*
2097639 GCCGCTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
65 GCCACTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
* * * ** * *
2097697 TCTAGTGGCATTTTAAGCACAAACGCCGCTAAAGGCCCGTACATTAGTGGCGTTTTCATATAAAC
1 TTTAGTGGCGTTTT-AGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAATACAAAC
* * * * *
2097762 GCCGCTAATTACTATACTTTAGTGGCATTTTTGTACAAATGCCGCTAAAAACTCATAC
65 GCCACTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
* * * * *
2097820 TTTAGCGGCGTTCTAAGTACAATCGTCGCTAAAGT-CCCGTACATTA--GACGTTTTAAGTACAA
1 TTTAGTGGCGTT-TTAGTACAAACGCCGCTAAA-TACCCGTACATTAGTGGCGTTTTAA-TACAA
* * * * *
2097882 ACGCCACTAAAGTACTTGTA-TTTAGCGGCATTTTTATACAAACGACGATAAAGACTCGTAC
63 ACGCCACT-AATTAC-TATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
* * * *
2097943 TTTAGTGGTGTTTTA-TACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTAAGCACAAAC
1 TTTAGTGGCGTTTTAGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAA-TACAAAC
*
2098007 TCCACTAA
65 GCCACTAA
2098015 ATGCTTGTAC
Statistics
Matches: 262, Mismatches: 46, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
120 1 0.00
121 35 0.13
122 38 0.15
123 184 0.70
124 4 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (122 bp):
TTTAGTGGCGTTTTAGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAATACAAACG
CCACTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
Found at i:2098029 original size:123 final size:122
Alignment explanation
Indices: 2097575--2098079 Score: 430
Period size: 123 Copynumber: 4.1 Consensus size: 122
2097565 AAAATGGGTT
* * * ** ** * *
2097575 TTTAGCGGCGTTTTTTGAACAAACGCCGCTAAATA-CTATAGTTTAGTGGCGTTTTCATATAAAC
1 TTTAGTGGCG-TTTTAGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAATACAAAC
* *
2097639 GCCGCTAATTACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
65 GCCACTAAATACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
* * * ** * *
2097697 TCTAGTGGCATTTTAAGCACAAACGCCGCTAAAGGCCCGTACATTAGTGGCGTTTTCATATAAAC
1 TTTAGTGGCGTTTT-AGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAATACAAAC
* * * * * *
2097762 GCCGCTAATTACTATACTTTAGTGGCATTTTTGTACAAATGCCGCTAAAAACTCATAC
65 GCCACTAAATACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
* * * * *
2097820 TTTAGCGGCGTTCTAAGTACAATCGTCGCTAAAGT-CCCGTACATTA--GACGTTTTAAGTACAA
1 TTTAGTGGCGTT-TTAGTACAAACGCCGCTAAA-TACCCGTACATTAGTGGCGTTTTAA-TACAA
* * * *
2097882 ACGCCACTAAAGTACTTGTA-TTTAGCGGCATTTTTATACAAACGACGATAAAGACTCGTAC
63 ACGCCACTAAA-TAC-TATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
* * * *
2097943 TTTAGTGGTGTTTTA-TACAAACGCCGCTAAATACTCGTACTTTAGTGGCGTTTTAAGCACAAAC
1 TTTAGTGGCGTTTTAGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAA-TACAAAC
* * * ** * * * * * *
2098007 TCCACTAAATGCTTGTACTTTAGTAGCGTTTTAAGCACAAACACCGCTAAATAAAT-GTAC
65 GCCACTAAATAC-TATACTTTAGCGGCATTTT-TGTACAAACGCCGCTAAA-GACTCGTAC
2098067 TTTAGTGGCGTTT
1 TTTAGTGGCGTTT
2098080 GTATATATAT
Statistics
Matches: 311, Mismatches: 59, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
120 1 0.00
121 35 0.11
122 45 0.14
123 196 0.63
124 32 0.10
125 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (122 bp):
TTTAGTGGCGTTTTAGTACAAACGCCGCTAAATACCCGTACATTAGTGGCGTTTTAATACAAACG
CCACTAAATACTATACTTTAGCGGCATTTTTGTACAAACGCCGCTAAAGACTCGTAC
Found at i:2101449 original size:43 final size:43
Alignment explanation
Indices: 2101104--2101430 Score: 474
Period size: 43 Copynumber: 7.6 Consensus size: 43
2101094 CAAATGACAT
* * *
2101104 TAAATACACAGTCAATAGCGGCGTTTGTAAAGAAAAACGTCGC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
* *
2101147 TAAATACACAGTCAATAACGGCGTTTATAAAGACAAACGCTGC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
* * * *
2101190 TAAATACACAGTCAATAGCGGCATTTGTAAAGAAAAATGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
* * * *
2101233 TAAATGCACAGTCAATAGCGGCGTTTGTAAAGAAAAACGCCAC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
* * *
2101276 TAAATACATAGTCAATAGCGGCATTTATAAAGACAAATGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
* * *
2101319 TAAATACACAGTCAATAGCGACGTTTATAAAGACAAATGCCAC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
2101362 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
1 TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
*
2101405 TAAATACACAGTCAATAGTGGCGTTT
1 TAAATACACAGTCAATAGCGGCGTTT
2101431 GTCTTTACAA
Statistics
Matches: 254, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 254 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (43 bp):
TAAATACACAGTCAATAGCGGCGTTTATAAAGACAAACGCCGC
Found at i:2101675 original size:2 final size:2
Alignment explanation
Indices: 2101668--2101843 Score: 120
Period size: 2 Copynumber: 91.0 Consensus size: 2
2101658 TTTAATTTTC
* * *
2101668 TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
2101710 TA AA CTA TA TA TG TA TA AA T- TA TA TA GTT TA TA AA T- TA TA -A
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * *
2101751 TT TA TA T- TA -A TA TA GTA TA TA TA TG TA TG TA TA -A CTA -A TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * *
2101791 TA TG TA -A TC TA TA GA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2101831 TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA
2101844 GAAACACTAT
Statistics
Matches: 132, Mismatches: 28, Indels: 28
0.70 0.15 0.15
Matches are distributed among these distances:
1 10 0.08
2 117 0.89
3 5 0.04
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.48
Consensus pattern (2 bp):
TA
Found at i:2102063 original size:19 final size:19
Alignment explanation
Indices: 2102054--2102154 Score: 105
Period size: 21 Copynumber: 5.0 Consensus size: 19
2102044 ACATGTAAAC
2102054 TATATATAT-AACTTATAGTA
1 TATATATATAAAC-TATA-TA
* *
2102074 CATATATGTATAAACTATGTA
1 --TATATATATAAACTATATA
2102095 TAATATATATAAACTATATA
1 T-ATATATATAAACTATATA
2102115 TATATATATAACCACTATATA
1 TATATATATAA--ACTATATA
*
2102136 TATATATATAAACCATATA
1 TATATATATAAACTATATA
2102155 AAATAAATTA
Statistics
Matches: 70, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
19 18 0.26
20 17 0.24
21 21 0.30
22 11 0.16
23 3 0.04
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (19 bp):
TATATATATAAACTATATA
Found at i:2102094 original size:11 final size:11
Alignment explanation
Indices: 2102082--2102154 Score: 54
Period size: 11 Copynumber: 7.2 Consensus size: 11
2102072 TACATATATG
*
2102082 TATAAACTATG
1 TATAAACTATA
2102093 TAT-AA-TATA
1 TATAAACTATA
2102102 TATAAACTATA
1 TATAAACTATA
2102113 TAT--A-TATA
1 TATAAACTATA
2102121 TATAACCACTATA
1 TATAA--ACTATA
2102134 TAT--A-TATA
1 TATAAACTATA
*
2102142 TATAAACCATA
1 TATAAACTATA
2102153 TA
1 TA
2102155 AAATAAATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
8 14 0.28
9 8 0.16
10 5 0.10
11 15 0.30
12 1 0.02
13 7 0.14
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.38
Consensus pattern (11 bp):
TATAAACTATA
Found at i:2102146 original size:21 final size:19
Alignment explanation
Indices: 2102075--2102154 Score: 106
Period size: 19 Copynumber: 4.1 Consensus size: 19
2102065 CTTATAGTAC
* *
2102075 ATATATGTATAAACTATGT
1 ATATATATATAAACTATAT
2102094 ATAATATATATAAACTATAT
1 AT-ATATATATAAACTATAT
2102114 ATATATATATAACCACTATAT
1 ATATATATATAA--ACTATAT
*
2102135 ATATATATATAAACCATAT
1 ATATATATATAAACTATAT
2102154 A
1 A
2102155 AAATAAATTA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
19 19 0.35
20 17 0.31
21 19 0.35
ACGTcount: A:0.50, C:0.09, G:0.03, T:0.39
Consensus pattern (19 bp):
ATATATATATAAACTATAT
Found at i:2102638 original size:64 final size:64
Alignment explanation
Indices: 2102554--2102706 Score: 193
Period size: 65 Copynumber: 2.4 Consensus size: 64
2102544 CCCTATTTCG
* *
2102554 AATGCAATTTGTGTACCGATGCACA-ACCATGCATCGATGCACTCTTGAAT-TTATTGAAACATC
1 AATGC-ATTTATGTACCGATGCACAGACCATGCATCGATGCACTCCTGAATCTT-TTGAAACATC
2102617 A
64 A
** *
2102618 AATGCATTTTATGTACCGATGCACAGACCATGCATCGATGCACTCCTGGCTCTTTTGAAACATCG
1 AATGCA-TTTATGTACCGATGCACAGACCATGCATCGATGCACTCCTGAATCTTTTGAAACATCA
* *
2102683 AATGTAATTAGTGTACCGATGCAC
1 AATGCATTTA-TGTACCGATGCAC
2102707 CCCAAGTGTA
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
63 1 0.01
64 25 0.32
65 50 0.64
66 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (64 bp):
AATGCATTTATGTACCGATGCACAGACCATGCATCGATGCACTCCTGAATCTTTTGAAACATCA
Found at i:2104033 original size:15 final size:15
Alignment explanation
Indices: 2104009--2104039 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2103999 GAAGTTAGTT
2104009 TACTCACTTTCAAAA
1 TACTCACTTTCAAAA
*
2104024 TACTCTCTTTCAAAA
1 TACTCACTTTCAAAA
2104039 T
1 T
2104040 CTTGGCAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (15 bp):
TACTCACTTTCAAAA
Found at i:2105264 original size:11 final size:11
Alignment explanation
Indices: 2105244--2105290 Score: 76
Period size: 11 Copynumber: 4.3 Consensus size: 11
2105234 ACCGTACACC
*
2105244 CGAACTAGATT
1 CGAACCAGATT
2105255 CGAACCAGATT
1 CGAACCAGATT
*
2105266 CGAACAAGATT
1 CGAACCAGATT
2105277 CGAACCAGATT
1 CGAACCAGATT
2105288 CGA
1 CGA
2105291 TCCGAATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (11 bp):
CGAACCAGATT
Found at i:2105269 original size:22 final size:22
Alignment explanation
Indices: 2105244--2105290 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
2105234 ACCGTACACC
*
2105244 CGAACTAGATTCGAACCAGATT
1 CGAACAAGATTCGAACCAGATT
2105266 CGAACAAGATTCGAACCAGATT
1 CGAACAAGATTCGAACCAGATT
2105288 CGA
1 CGA
2105291 TCCGAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (22 bp):
CGAACAAGATTCGAACCAGATT
Found at i:2107341 original size:17 final size:17
Alignment explanation
Indices: 2107319--2107353 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
2107309 AACGGTGATC
2107319 GGATATAGGAGGTTCAA
1 GGATATAGGAGGTTCAA
2107336 GGATATAGGAGGTTCAA
1 GGATATAGGAGGTTCAA
2107353 G
1 G
2107354 AATCGACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.37, T:0.23
Consensus pattern (17 bp):
GGATATAGGAGGTTCAA
Found at i:2107652 original size:17 final size:17
Alignment explanation
Indices: 2107630--2107664 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
2107620 AACGGTGATC
2107630 GGATATAGGAGGTTCAA
1 GGATATAGGAGGTTCAA
2107647 GGATATAGGAGGTTCAA
1 GGATATAGGAGGTTCAA
2107664 G
1 G
2107665 AATCGACCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.37, T:0.23
Consensus pattern (17 bp):
GGATATAGGAGGTTCAA
Found at i:2109382 original size:22 final size:21
Alignment explanation
Indices: 2109343--2109383 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2109333 TAAAAAAATA
**
2109343 AACGAAAACAACGTTAAAACG
1 AACGAAAACAACCATAAAACG
2109364 AACGAAAACACACCATAAAA
1 AACGAAAACA-ACCATAAAA
2109384 AAAGTTGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.61, C:0.22, G:0.10, T:0.07
Consensus pattern (21 bp):
AACGAAAACAACCATAAAACG
Found at i:2110590 original size:24 final size:24
Alignment explanation
Indices: 2110562--2110607 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
2110552 GTTTAAGGTA
*
2110562 TATTTTATTATATTTAA-TATTTTG
1 TATTTAATT-TATTTAAGTATTTTG
2110586 TATTTAATTTATTTAAGTATTT
1 TATTTAATTTATTTAAGTATTT
2110608 AAATTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
TATTTAATTTATTTAAGTATTTTG
Found at i:2110607 original size:17 final size:17
Alignment explanation
Indices: 2110585--2110622 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
2110575 TTAATATTTT
*
2110585 GTATTTAATTTATTTAA
1 GTATTTAAATTATTTAA
2110602 GTATTTAAATTATTTAA
1 GTATTTAAATTATTTAA
2110619 -TATT
1 GTATT
2110623 GTATTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (17 bp):
GTATTTAAATTATTTAA
Found at i:2111613 original size:45 final size:45
Alignment explanation
Indices: 2111554--2111679 Score: 216
Period size: 45 Copynumber: 2.8 Consensus size: 45
2111544 GAATTGTAGC
* * * *
2111554 AGTTAAAGCTAAGGCGCGGCCCCTGCCCCGCGCTATATATAATTG
1 AGTTAAAGGTAAGGCGCGACCCCTGACCCGCACTATATATAATTG
2111599 AGTTAAAGGTAAGGCGCGACCCCTGACCCGCACTATATATAATTG
1 AGTTAAAGGTAAGGCGCGACCCCTGACCCGCACTATATATAATTG
2111644 AGTTAAAGGTAAGGCGCGACCCCTGACCCGCACTAT
1 AGTTAAAGGTAAGGCGCGACCCCTGACCCGCACTAT
2111680 TGCCCTACGT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 77 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (45 bp):
AGTTAAAGGTAAGGCGCGACCCCTGACCCGCACTATATATAATTG
Found at i:2111770 original size:51 final size:51
Alignment explanation
Indices: 2111694--2111824 Score: 217
Period size: 51 Copynumber: 2.6 Consensus size: 51
2111684 CTACGTGGAG
*
2111694 TAAGGCGCGCCCCAAGGGCCGCGCTTTACACACGTGTAACCCACATCAGCA
1 TAAGGCGCGCCCCAGGGGCCGCGCTTTACACACGTGTAACCCACATCAGCA
*
2111745 TAAGGTGCGCCCCAGGGGCCGCGCTTTACACACGTGTAACCCACATCAGCA
1 TAAGGCGCGCCCCAGGGGCCGCGCTTTACACACGTGTAACCCACATCAGCA
* * *
2111796 TAAGGCGCGCTCCAGGGGGCGCGCCTTAC
1 TAAGGCGCGCCCCAGGGGCCGCGCTTTAC
2111825 CGCGCGCTGC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
51 74 1.00
ACGTcount: A:0.22, C:0.36, G:0.27, T:0.15
Consensus pattern (51 bp):
TAAGGCGCGCCCCAGGGGCCGCGCTTTACACACGTGTAACCCACATCAGCA
Found at i:2111837 original size:26 final size:26
Alignment explanation
Indices: 2111800--2111850 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2111790 TCAGCATAAG
2111800 GCGCGCTCCAGGGGGCGCGCCTTACC
1 GCGCGCTCCAGGGGGCGCGCCTTACC
* *
2111826 GCGCGCTGCAGGGGGCGTGCCTTAC
1 GCGCGCTCCAGGGGGCGCGCCTTAC
2111851 TGAAAAGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.08, C:0.37, G:0.41, T:0.14
Consensus pattern (26 bp):
GCGCGCTCCAGGGGGCGCGCCTTACC
Found at i:2112426 original size:23 final size:24
Alignment explanation
Indices: 2112391--2112443 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
2112381 GGCCTTGAGG
2112391 AGAAAAACTTTTTAATATTTCCTA
1 AGAAAAACTTTTTAATATTTCCTA
*
2112415 AGAAAATCTTTTTAATATTTCCTA
1 AGAAAAACTTTTTAATATTTCCTA
2112439 AGAAA
1 AGAAA
2112444 CTCGCCACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (24 bp):
AGAAAAACTTTTTAATATTTCCTA
Found at i:2112505 original size:2 final size:2
Alignment explanation
Indices: 2112498--2112530 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2112488 AATTAAAGAA
2112498 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2112531 ACTTTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2113607 original size:199 final size:199
Alignment explanation
Indices: 2113267--2113664 Score: 796
Period size: 199 Copynumber: 2.0 Consensus size: 199
2113257 TAATGCAACA
2113267 TTGGTGAGACATAACGAGTACAATGTAGGTTAGATTTGTAACACCCCTGTTGAGTCAATCAAGAG
1 TTGGTGAGACATAACGAGTACAATGTAGGTTAGATTTGTAACACCCCTGTTGAGTCAATCAAGAG
2113332 GATGAAATAACCAAGAGGGGGTGAATTGACAATTAAAATTTTTGGTGGAAGCTTGAAAGAAAAAA
66 GATGAAATAACCAAGAGGGGGTGAATTGACAATTAAAATTTTTGGTGGAAGCTTGAAAGAAAAAA
2113397 GAGTTCATCTATCAATCTCATCCTTCTTTGTAGATGGTCACGAGTAACACAACCTGGAGTCCATC
131 GAGTTCATCTATCAATCTCATCCTTCTTTGTAGATGGTCACGAGTAACACAACCTGGAGTCCATC
2113462 ATGG
196 ATGG
2113466 TTGGTGAGACATAACGAGTACAATGTAGGTTAGATTTGTAACACCCCTGTTGAGTCAATCAAGAG
1 TTGGTGAGACATAACGAGTACAATGTAGGTTAGATTTGTAACACCCCTGTTGAGTCAATCAAGAG
2113531 GATGAAATAACCAAGAGGGGGTGAATTGACAATTAAAATTTTTGGTGGAAGCTTGAAAGAAAAAA
66 GATGAAATAACCAAGAGGGGGTGAATTGACAATTAAAATTTTTGGTGGAAGCTTGAAAGAAAAAA
2113596 GAGTTCATCTATCAATCTCATCCTTCTTTGTAGATGGTCACGAGTAACACAACCTGGAGTCCATC
131 GAGTTCATCTATCAATCTCATCCTTCTTTGTAGATGGTCACGAGTAACACAACCTGGAGTCCATC
2113661 ATGG
196 ATGG
2113665 GTTGTGATGT
Statistics
Matches: 199, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
199 199 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (199 bp):
TTGGTGAGACATAACGAGTACAATGTAGGTTAGATTTGTAACACCCCTGTTGAGTCAATCAAGAG
GATGAAATAACCAAGAGGGGGTGAATTGACAATTAAAATTTTTGGTGGAAGCTTGAAAGAAAAAA
GAGTTCATCTATCAATCTCATCCTTCTTTGTAGATGGTCACGAGTAACACAACCTGGAGTCCATC
ATGG
Found at i:2130027 original size:14 final size:14
Alignment explanation
Indices: 2129980--2130028 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
2129970 TTGCTTGAAG
*
2129980 AAAAGTGAAGAAGAA
1 AAAAATGAA-AAGAA
**
2129995 AAAAATGAATGGAA
1 AAAAATGAAAAGAA
2130009 AAAAATGAAAAGAA
1 AAAAATGAAAAGAA
2130023 TAAAAA
1 -AAAAA
2130029 AAAAGAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 15 0.54
15 13 0.46
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.10
Consensus pattern (14 bp):
AAAAATGAAAAGAA
Found at i:2131164 original size:55 final size:54
Alignment explanation
Indices: 2131030--2131565 Score: 713
Period size: 55 Copynumber: 9.9 Consensus size: 54
2131020 AGGTTCCCTA
* * * * *
2131030 CGATCGTTGAAGATTGTTCAAGTCTCATACTCTCTGAAGAAATATGGGCCA-ACA
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGCAGACG
* *
2131084 CGATCGTTGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGAGGGCAGACG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAG-GGGCAGACG
* * *
2131139 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAGGAAATAGGGAGCGGACA
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG-GCAGACG
* *
2131194 CGATTGTTGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGGGGGAGACG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGCAGACG
* * * *
2131248 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTATGAAGAAATAGGGGGCGGACA
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGCAGACG
*
2131303 CGATTGTTGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGCAGACG
* * *
2131358 CGATTGATGAAGATTG-T-GGGTCTTATACTCTCTAAAGAAATAGGGGGCAGACG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGCAGACG
* * *
2131411 CGATCGTTGAATATTGTTCGAGTCTTATACTCTCTGACGAAATAGGGAGCAGACG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG-GCAGACG
* * * *
2131466 CGATTGATGAAGATTG-T-GGGTCTTATACTCTCTAAAGAAATGGGGGGCAGACG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAAT-AGGGGCAGACG
*
2131519 CGATTGTTAAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG
1 CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG
2131566 AGGTTTTTGA
Statistics
Matches: 426, Mismatches: 46, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
53 91 0.21
54 105 0.25
55 230 0.54
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (54 bp):
CGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGCAGACG
Found at i:2131309 original size:164 final size:164
Alignment explanation
Indices: 2131029--2131565 Score: 769
Period size: 164 Copynumber: 3.3 Consensus size: 164
2131019 CAGGTTCCCT
* * * ** *
2131029 ACGATCGTTGAAGATTGTTCAAGTCTCATACTCTCTGAAGAAATATGGGCCA-ACACGATCGTTG
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGAGACGCGATCGTTG
* *
2131093 AAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGAGGGCAGACGCGATTGTTGAAGATTGTTC
65 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
* * * *
2131158 GAGTCTTATACTCTCTGAGGAAATAGGGAGCGGAC
130 GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
*
2131193 ACGATTGTTGAAGATTGTTCGGGTCTTATACTCTCTGAAGAAATAGGGGGAGACGCGATCGTTGA
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGAGACGCGATCGTTGA
* * *
2131258 AGATTGTTCGAGTCTTATACTCTATGAAGAAATAGGGGGCGGACACGATTGTTGAAGATTGTTCG
66 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTCG
2131323 GGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
131 GGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* * * *
2131357 GCGATTGATGAAGATTG-T-GGGTCTTATACTCTCTAAAGAAATAGGGGGCAGACGCGATCGTTG
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGG-AGACGCGATCGTTG
* * * *
2131420 AATATTGTTCGAGTCTTATACTCTCTGACGAAATAGGGAGCAGACGCGATTGATGAAGATTG-T-
65 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTC
* *
2131483 GGGTCTTATACTCTCTAAAGAAATGGGGGGCAGAC
130 GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
* *
2131518 GCGATTGTTAAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGG
2131566 AGGTTTTTGA
Statistics
Matches: 337, Mismatches: 32, Indels: 9
0.89 0.08 0.02
Matches are distributed among these distances:
161 48 0.14
162 31 0.09
163 100 0.30
164 158 0.47
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (164 bp):
ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGAGACGCGATCGTTGA
AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATTGTTCG
GGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
Found at i:2131447 original size:108 final size:110
Alignment explanation
Indices: 2131037--2131565 Score: 764
Period size: 108 Copynumber: 4.9 Consensus size: 110
2131027 CTACGATCGT
* * * * *
2131037 TGAAGATTGTTCAAGTCTCATACTCTCTGAAGAAATATGGGCCA-ACACGATCGTTGAAGATTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGAAGATTGT
* *
2131101 TCGGGTCTTATACTCTCTGAAGAAATAGAGGGCAGACGCGATTGT
66 TCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
* * *
2131146 TGAAGATTGTTCGAGTCTTATACTCTCTGAGGAAATAGGGAGCGGACACGATTGTTGAAGATTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGAAGATTGT
* *
2131211 TCGGGTCTTATACTCTCTGAAGAAATAGGGGG-AGACGCGATCGT
66 TCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
* *
2131255 TGAAGATTGTTCGAGTCTTATACTCTATGAAGAAATAGGGGGCGGACACGATTGTTGAAGATTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGAAGATTGT
2131320 TCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
66 TCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
* * * * *
2131365 TGAAGATTG-T-GGGTCTTATACTCTCTAAAGAAATAGGGGGCAGACGCGATCGTTGAATATTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGAAGATTGT
* * *
2131428 TCGAGTCTTATACTCTCTGACGAAATAGGGAGCAGACGCGATTGA
66 TCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
* * * * *
2131473 TGAAGATTG-T-GGGTCTTATACTCTCTAAAGAAATGGGGGGCAGACGCGATTGTTAAAGATTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGAAGATTGT
*
2131536 TCGAGTCTTATACTCTCTGAAGAAATAGGG
66 TCGGGTCTTATACTCTCTGAAGAAATAGGG
2131566 AGGTTTTTGA
Statistics
Matches: 388, Mismatches: 30, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
108 176 0.45
109 143 0.37
110 69 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (110 bp):
TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGAAGATTGT
TCGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
Found at i:2143045 original size:8 final size:8
Alignment explanation
Indices: 2143027--2143073 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
2143017 GTCTGAATTC
2143027 GGATATTAG
1 GGAT-TTAG
*
2143036 TGATTTAG
1 GGATTTAG
*
2143044 TGATTT-G
1 GGATTTAG
*
2143051 AGATTTAG
1 GGATTTAG
2143059 GGATTTAG
1 GGATTTAG
2143067 GGATTTA
1 GGATTTA
2143074 AGTTTAGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.18
8 25 0.74
9 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.43
Consensus pattern (8 bp):
GGATTTAG
Found at i:2143063 original size:23 final size:22
Alignment explanation
Indices: 2143032--2143080 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
2143022 AATTCGGATA
* * *
2143032 TTAGTGATTTAGTGATTTGAGAT
1 TTAGGGATTTAGGGATTTAAG-T
2143055 TTAGGGATTTAGGGATTTAAGT
1 TTAGGGATTTAGGGATTTAAGT
2143077 TTAG
1 TTAG
2143081 AGATCTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.45
Consensus pattern (22 bp):
TTAGGGATTTAGGGATTTAAGT
Found at i:2145339 original size:90 final size:88
Alignment explanation
Indices: 2145181--2145354 Score: 312
Period size: 89 Copynumber: 2.0 Consensus size: 88
2145171 TCTAACACAC
2145181 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
*
2145246 TTTAATTAATTAGAATTTAATAAT
66 TTTAATTAATT-GAAATTAATAAT
*
2145270 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTAT
2145335 ATTTAATTAATTGAAATTAA
65 ATTTAATTAATTGAAATTAA
2145355 ATATTCGGGA
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
89 41 0.50
90 41 0.50
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.45
Consensus pattern (88 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAATAAT
Found at i:2146260 original size:2 final size:2
Alignment explanation
Indices: 2146253--2146289 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
2146243 TTTATGTTAA
2146253 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
2146290 TATATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:2146294 original size:2 final size:2
Alignment explanation
Indices: 2146289--2146337 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
2146279 ACACACACAC
2146289 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2146331 AT AT AT A
1 AT AT AT A
2146338 CTGAAAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2151338 original size:2 final size:2
Alignment explanation
Indices: 2151326--2151355 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
2151316 TAAAACAAAC
2151326 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
2151356 ACCGGTGGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2160257 original size:16 final size:17
Alignment explanation
Indices: 2160236--2160268 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2160226 ATTTCTTGAA
2160236 AAATCAT-TATGGGTAG
1 AAATCATGTATGGGTAG
2160252 AAATCATGTATGGGTAG
1 AAATCATGTATGGGTAG
2160269 GAATACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (17 bp):
AAATCATGTATGGGTAG
Found at i:2168900 original size:25 final size:25
Alignment explanation
Indices: 2168872--2168924 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
2168862 CTCTTGGATA
*
2168872 TATCGATACACACAAACATCGAATG
1 TATCAATACACACAAACATCGAATG
*
2168897 TATCAATACACATAAACATCGAATG
1 TATCAATACACACAAACATCGAATG
2168922 TAT
1 TAT
2168925 TTTGTGTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (25 bp):
TATCAATACACACAAACATCGAATG
Found at i:2169306 original size:159 final size:159
Alignment explanation
Indices: 2169012--2169329 Score: 627
Period size: 159 Copynumber: 2.0 Consensus size: 159
2169002 ACACCCCAAG
2169012 TGTACTGATACACTAGGTCAACCAACGGTTGAAATATTTGAATTTTACACTGAGTGTATAGATAC
1 TGTACTGATACACTAGGTCAACCAACGGTTGAAATATTTGAATTTTACACTGAGTGTATAGATAC
2169077 GCCTTGAGAGTGTACCGATACACCTACACTCCCAACTGAATTTTTAAATTATAATTACACCATAA
66 GCCTTGAGAGTGTACCGATACACCTACACTCCCAACTGAATTTTTAAATTATAATTACACCATAA
2169142 AGACTCTATTGGCTTCATCAATGATCCCC
131 AGACTCTATTGGCTTCATCAATGATCCCC
2169171 TGTACTGATACACTAGGTCAACCAACGGTTGAAATATTTGAATTTTACACTGAGTGTATAGATAC
1 TGTACTGATACACTAGGTCAACCAACGGTTGAAATATTTGAATTTTACACTGAGTGTATAGATAC
2169236 GCCTTGAGAGTGTACCGATACACCTACACTCCCAACTGAATTTTTAAATTATAATTACACCATAA
66 GCCTTGAGAGTGTACCGATACACCTACACTCCCAACTGAATTTTTAAATTATAATTACACCATAA
*
2169301 CGACTCTATTGGCTTCATCAATGATCCCC
131 AGACTCTATTGGCTTCATCAATGATCCCC
2169330 AACATTCAGA
Statistics
Matches: 158, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
159 158 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31
Consensus pattern (159 bp):
TGTACTGATACACTAGGTCAACCAACGGTTGAAATATTTGAATTTTACACTGAGTGTATAGATAC
GCCTTGAGAGTGTACCGATACACCTACACTCCCAACTGAATTTTTAAATTATAATTACACCATAA
AGACTCTATTGGCTTCATCAATGATCCCC
Found at i:2182403 original size:15 final size:16
Alignment explanation
Indices: 2182383--2182413 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2182373 TAGTCCTTTA
2182383 TGTATA-TATGTATTT
1 TGTATATTATGTATTT
2182398 TGTATATTATGTATTT
1 TGTATATTATGTATTT
2182414 ATTAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (16 bp):
TGTATATTATGTATTT
Found at i:2184002 original size:23 final size:23
Alignment explanation
Indices: 2183976--2184023 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
2183966 GGTTTCATCC
*
2183976 AATAAAGTCATGGTTCACTAAGA
1 AATAAAGTCATGGTACACTAAGA
* * *
2183999 AATAATGTCGTGGTACATTAAGA
1 AATAAAGTCATGGTACACTAAGA
2184022 AA
1 AA
2184024 GCAGGTTGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (23 bp):
AATAAAGTCATGGTACACTAAGA
Found at i:2186002 original size:202 final size:201
Alignment explanation
Indices: 2185656--2186025 Score: 472
Period size: 202 Copynumber: 1.8 Consensus size: 201
2185646 TGGTTCCTCT
* * * ** **
2185656 TTGCCACCATTCGGTCAATATACTCTTGAGTTGAGTGGAATCGAACTTGAAAGCTTTGGTCAACA
1 TTGCCACCATACGGCCAACATACTCTTGAGTTGAACGGAATCGAAAGTGAAAGCTTTGGTCAACA
* * * * * *
2185721 GATAGCTCTTCTCGACTTAAGCTATGTCAAAATCTGGACTTGGAGATAGTTCTTTGTTGTTATAT
66 AATAGCTCTTCTCAACTTAAGCTATGTCAAAATCTGGACTCGGAGATAGTTCCTTGTTGCTAAAT
* **
2185786 CGTAGCTGATTTGGGGTCTTCTTCTAGAATTAAAAACCTCAATTTTAATTTTGATTGATATGTAG
131 CGCAGCCAATTT-GGGTCTTCTTCTAGAATTAAAAACCTCAATTTTAATTTTGATTGATATGTAG
2185851 TTCTTCG
195 TTCTTCG
* * *
2185858 TTGCTACCATACGGCCAACATACTCTTGAGTTGAACGGATTCGAAAGTGAAAGCTTTGGTCGACA
1 TTGCCACCATACGGCCAACATACTCTTGAGTTGAACGGAATCGAAAGTGAAAGCTTTGGTCAACA
** * *
2185923 AATAGCTCTTCTCAACTTAAGCTATGTTGAAATTTGGGCTCGGA-AGTAGTTCCTTGTTGCTAAA
66 AATAGCTCTTCTCAACTTAAGCTATGTCAAAATCTGGACTCGGAGA-TAGTTCCTTGTTGCTAAA
* * * *
2185987 TTGCAGCCAATTTGGGTCTTCTTCTTGACTTAAAGACCT
130 TCGCAGCCAATTTGGGTCTTCTTCTAGAATTAAAAACCT
2186026 GGTTTAAATT
Statistics
Matches: 140, Mismatches: 27, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
201 24 0.17
202 116 0.83
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (201 bp):
TTGCCACCATACGGCCAACATACTCTTGAGTTGAACGGAATCGAAAGTGAAAGCTTTGGTCAACA
AATAGCTCTTCTCAACTTAAGCTATGTCAAAATCTGGACTCGGAGATAGTTCCTTGTTGCTAAAT
CGCAGCCAATTTGGGTCTTCTTCTAGAATTAAAAACCTCAATTTTAATTTTGATTGATATGTAGT
TCTTCG
Found at i:2189177 original size:28 final size:28
Alignment explanation
Indices: 2189145--2189198 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
2189135 GAACCGGTCT
*
2189145 GACCCGACCCGACCCGACCTGTTGACAC
1 GACCCGACCCGACCCGACCCGTTGACAC
*
2189173 GACCCGACCCGACCCTACCCGTTGAC
1 GACCCGACCCGACCCGACCCGTTGAC
2189199 CGTTGATCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.20, C:0.48, G:0.20, T:0.11
Consensus pattern (28 bp):
GACCCGACCCGACCCGACCCGTTGACAC
Found at i:2189203 original size:7 final size:7
Alignment explanation
Indices: 2189191--2189220 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
2189181 CCGACCCTAC
2189191 CCGTTGA
1 CCGTTGA
2189198 CCGTTGA
1 CCGTTGA
*
2189205 TCGTTGA
1 CCGTTGA
2189212 CCGTTGA
1 CCGTTGA
2189219 CC
1 CC
2189221 ACCTTTGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.13, C:0.30, G:0.27, T:0.30
Consensus pattern (7 bp):
CCGTTGA
Found at i:2190293 original size:117 final size:117
Alignment explanation
Indices: 2190142--2190542 Score: 671
Period size: 117 Copynumber: 3.4 Consensus size: 117
2190132 TCCTTTGTTG
* *
2190142 TGTGCTTAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTATACATTT
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
* * * *
2190207 TTGTGATTGGAGTGATTGGATGGGAAAGTTATTAGCGCATGCTCTTCGTCTT
66 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCATGCTCCTCGGCTT
* *
2190259 TGTGCTCAGGGTAAGTCCTTACTGGTGTGTAGGTGGGTGTATGGTTCTGGGAAACCTACACATTT
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
*
2190324 TGGTGGTTGGAGTGATTGGATGGGAAAGTTATTACCGCA-GACTCCTCGGCTT
66 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCATG-CTCCTCGGCTT
*
2190376 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGTGAACCTACACATTT
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
*
2190441 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCG-TTGGCTCCTCGGCTT
66 TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCAT-GCTCCTCGGCTT
2190493 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGG
1 TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGG
2190543 AAAATATATA
Statistics
Matches: 267, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
116 1 0.00
117 265 0.99
118 1 0.00
ACGTcount: A:0.17, C:0.14, G:0.34, T:0.34
Consensus pattern (117 bp):
TGTGCTCAGGGTAAGTCCTTACTGGTGTGCAGGTGGGTGTATGGTTCTGGGGAACCTACACATTT
TGGTGATTGGAGTGATTGGATGGGAAAGTTATTACCGCATGCTCCTCGGCTT
Found at i:2203137 original size:18 final size:18
Alignment explanation
Indices: 2203114--2203154 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
2203104 TTATGAGGTG
2203114 AAAATAAT-ATTATTGTAA
1 AAAATAATAATTATT-TAA
2203132 AAAAT-ATAATTATTTAA
1 AAAATAATAATTATTTAA
*
2203149 ATAATA
1 AAAATA
2203155 TTTAACTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAATAATAATTATTTAA
Found at i:2203149 original size:17 final size:18
Alignment explanation
Indices: 2203122--2203155 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2203112 TGAAAATAAT
2203122 ATTATTGTAAAAAATATA
1 ATTATTGTAAAAAATATA
*
2203140 ATTATT-TAAATAATAT
1 ATTATTGTAAAAAATAT
2203156 TTAACTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
ATTATTGTAAAAAATATA
Found at i:2210005 original size:22 final size:23
Alignment explanation
Indices: 2209954--2210008 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
2209944 CATCAATAGC
*
2209954 TTCTAGAAGGTCCAATCAGCAGT
1 TTCTAGAAGGTCCAATCAGCAGA
* *
2209977 TTCTAGAAGGTCTAGTCAGCA-A
1 TTCTAGAAGGTCCAATCAGCAGA
2209999 TTCTAGAAGG
1 TTCTAGAAGG
2210009 AGGATGAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (23 bp):
TTCTAGAAGGTCCAATCAGCAGA
Found at i:2211804 original size:22 final size:24
Alignment explanation
Indices: 2211774--2211819 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
2211764 TGTATGTCCT
*
2211774 CTTTCTAGAA-TTGCTGACTGGAC
1 CTTTCTAGAAGCTGCTGACTGGAC
2211797 CTTT-TAGAAGCTGCTGACTGGAC
1 CTTTCTAGAAGCTGCTGACTGGAC
2211820 TACCACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (24 bp):
CTTTCTAGAAGCTGCTGACTGGAC
Found at i:2213698 original size:3 final size:3
Alignment explanation
Indices: 2213684--2213720 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
2213674 AAATAGTTAT
*
2213684 TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
2213721 GTGTAAGTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:2214944 original size:81 final size:81
Alignment explanation
Indices: 2214805--2215002 Score: 303
Period size: 81 Copynumber: 2.5 Consensus size: 81
2214795 TGTTCTAAAA
*
2214805 TAAAAGACTAA-TAGCCTAGTTGTGCATTTGACAGAAATGTGTCAATCATGCCAATTAGATGAAA
1 TAAAAGACTAATTA-CCTAGCTGTGCATTTGACAGAAATGTGTCAATCATGCCAATTAGATGAAA
*
2214869 TGTTAAATACCTTTGAG
65 GGTTAAATACCTTTGAG
* *
2214886 TAAAAGACTAATTTCCTAGCTGTGCATTTGATAGAAATGTGTCAATCATG-CAAGTTAGATGAAA
1 TAAAAGACTAATTACCTAGCTGTGCATTTGACAGAAATGTGTCAATCATGCCAA-TTAGATGAAA
2214950 GGTTAAATACCTTTGAG
65 GGTTAAATACCTTTGAG
* *
2214967 T-AAAGATTAATTACCTAGCTGTGCATTTTACAGAAA
1 TAAAAGACTAATTACCTAGCTGTGCATTTGACAGAAA
2215003 GGTTAAATAC
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
80 34 0.32
81 72 0.67
82 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (81 bp):
TAAAAGACTAATTACCTAGCTGTGCATTTGACAGAAATGTGTCAATCATGCCAATTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:2215009 original size:53 final size:54
Alignment explanation
Indices: 2214946--2215059 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 54
2214936 CAAGTTAGAT
* * *
2214946 GAAAGGTTAAATACCTTTGAGT-AAAGATTAATTACCTAGCTGTGCATTTTACA
1 GAAAGGTTAAATACCTTTGAGTAAAAGATTAATTACCTAACTATGCATTTGACA
* *
2214999 GAAAGGTTAAATACCTTTGAGTAAAAGATTAATTGCCTAACTATGCATTTGGCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGATTAATTACCTAACTATGCATTTGACA
2215053 GAAAGGT
1 GAAAGGT
2215060 GCCAATAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 22 0.40
54 33 0.60
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (54 bp):
GAAAGGTTAAATACCTTTGAGTAAAAGATTAATTACCTAACTATGCATTTGACA
Found at i:2215779 original size:46 final size:46
Alignment explanation
Indices: 2215098--2215775 Score: 775
Period size: 46 Copynumber: 14.7 Consensus size: 46
2215088 AAATGCCTTT
* *
2215098 GGCATGAAAGGATGCCATAAATGAAAATGAATAACAGTGCATTATC
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * *
2215144 AGCATGAAAGGATGTCATAAATGAAAATGCATAACGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * ** *
2215190 GGCATGAAATGATGCCATAAAAGAAAATATATAACGGTTCATTATC
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * ** **
2215236 AGCATGAAAGGATGCCATAAATAGAAAATACATAACAATTTATTATC
1 GGCATGAAAGGATGCCATAAAT-GAAAATGCATAACGGTGCATTATC
* * **
2215283 GGCATGAAAAGATGCCATAAATGAAAATGTATAATAGTGCATTATC
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * * * * *
2215329 GACAAGAAAGAATGGCATAAATAAAAATGCATAATGGTGCATTATC
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * * * * *
2215375 GGCATGAAAGGATGTCATAAATAAAAATGCATAACAGTTCAATATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
*
2215421 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGAATTATC
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * * *
2215467 -GCATGAAAGAATGTCATAAATGAAAATGCATAATGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
*
2215512 TGCATGAAAGGAATGCCATAAATGAAAATGCATAACGGTGCATTATC
1 GGCATGAAAGG-ATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * * * *
2215559 GGAATTAAAGGATGCCATAAATAAAAATGAATAACGGTGCATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* *
2215605 GGCATGAGAGGATG-CATAAATGAAAATGCATAATGGTGCATTATC
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
* * ** * *
2215650 GACATGAAAGGATGCCATAAAAGAAAATGCATAACAATACATTATA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
** * * * * *
2215696 GGCATGAAAGGATATCATAAATGAAAATGCTTAATGGTGCGTAATT
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
** *
2215742 GGCATGAAAGGATGCCACCAATGAAAATACATAA
1 GGCATGAAAGGATGCCATAAATGAAAATGCATAA
2215776 TGGTATCTTA
Statistics
Matches: 528, Mismatches: 100, Indels: 8
0.83 0.16 0.01
Matches are distributed among these distances:
45 79 0.15
46 369 0.70
47 80 0.15
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.24
Consensus pattern (46 bp):
GGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATTATC
Found at i:2219603 original size:81 final size:81
Alignment explanation
Indices: 2219468--2219662 Score: 309
Period size: 81 Copynumber: 2.4 Consensus size: 81
2219458 TGTTCTAAAA
** * * *
2219468 TAAAAGACTAATAGCCTAGTTGTGCATTTGACAGAAATATGTCAATCATGCCAGTTAGATGAAAT
1 TAAAAGACTAATTTCCTAGCTGTGCATTTGACAAAAATATGTCAATCATGCCAGTTAGATGAAAG
2219533 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
* * *
2219549 TAAAAGACTAATTTCCTAGCTGTGTATTTGATAAAAATGTGTCAATCATGCCAGTTAGATGAAAG
1 TAAAAGACTAATTTCCTAGCTGTGCATTTGACAAAAATATGTCAATCATGCCAGTTAGATGAAAG
2219614 GTTAAATACCTTTGAG
66 GTTAAATACCTTTGAG
*
2219630 TAAAAGATTAATTTCCTAGCTGTGCATTTGACA
1 TAAAAGACTAATTTCCTAGCTGTGCATTTGACA
2219663 GAGGGGTTTA
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (81 bp):
TAAAAGACTAATTTCCTAGCTGTGCATTTGACAAAAATATGTCAATCATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:2220760 original size:23 final size:23
Alignment explanation
Indices: 2220728--2220786 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 23
2220718 TACCCCATAG
* *
2220728 GGTACCGATACCCCTATGCAAAA
1 GGTACTGATACCCCTATACAAAA
*
2220751 GGTACTGATA--CCTATACTAAA
1 GGTACTGATACCCCTATACAAAA
2220772 GGTA-TCGATACCCCT
1 GGTACT-GATACCCCT
2220787 TATGATGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.03
21 17 0.57
23 12 0.40
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (23 bp):
GGTACTGATACCCCTATACAAAA
Found at i:2227277 original size:12 final size:12
Alignment explanation
Indices: 2227260--2227300 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
2227250 ATCAAACCGT
* *
2227260 CCTCCATACTCA
1 CCTCCAAACCCA
2227272 CCTCCAAACCCA
1 CCTCCAAACCCA
*
2227284 CCTCCAAATCCA
1 CCTCCAAACCCA
2227296 CCTCC
1 CCTCC
2227301 TAATCCCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.27, C:0.56, G:0.00, T:0.17
Consensus pattern (12 bp):
CCTCCAAACCCA
Found at i:2227305 original size:12 final size:12
Alignment explanation
Indices: 2227270--2227306 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
2227260 CCTCCATACT
*
2227270 CACCTCCAAACC
1 CACCTCCAAATC
2227282 CACCTCCAAATC
1 CACCTCCAAATC
*
2227294 CACCTCCTAATC
1 CACCTCCAAATC
2227306 C
1 C
2227307 CAATCCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.30, C:0.54, G:0.00, T:0.16
Consensus pattern (12 bp):
CACCTCCAAATC
Found at i:2228799 original size:33 final size:34
Alignment explanation
Indices: 2228742--2228808 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
2228732 AAAAAGGGAG
* *
2228742 AAATGTTATAGTACGGGGGAGTATTTTTCAAAAT
1 AAATGTTATAGGACAGGGGAGTATTTTTCAAAAT
2228776 AAATGTTATAGGA-AGGGGAGTATTTTTCAAAAT
1 AAATGTTATAGGACAGGGGAGTATTTTTCAAAAT
2228809 GATTTTCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 19 0.61
34 12 0.39
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.34
Consensus pattern (34 bp):
AAATGTTATAGGACAGGGGAGTATTTTTCAAAAT
Found at i:2229219 original size:24 final size:23
Alignment explanation
Indices: 2229191--2229250 Score: 79
Period size: 21 Copynumber: 2.7 Consensus size: 23
2229181 ATACCCATAG
2229191 GGTACCGATACCCCTATACAAAGA
1 GGTACCGATACCCCTATACAAA-A
* *
2229215 GGTACTGATA--CCTATACCAAA
1 GGTACCGATACCCCTATACAAAA
2229236 GGTACCGATACCCCT
1 GGTACCGATACCCCT
2229251 TATGATGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 10 0.32
22 9 0.29
23 3 0.10
24 9 0.29
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (23 bp):
GGTACCGATACCCCTATACAAAA
Found at i:2231642 original size:20 final size:20
Alignment explanation
Indices: 2231610--2231877 Score: 131
Period size: 20 Copynumber: 11.7 Consensus size: 20
2231600 TTAAAATATG
*
2231610 GCATCCTATCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
2231630 GCATCCTTCCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
2231655 GACATCCTTTCATGACTTAAT
1 G-CATCCTTTCATGCCTTAAT
*
2231676 GCATCCTTTCATGCATTTTTAGTTAT
1 GCATCCTTTCATGC---CTTA---AT
*
2231702 GGCATCCTTTCACGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
2231723 GCATCCTTTCATGCATTTTTAGTTAT
1 GCATCCTTTCATGC---CTTA---AT
2231749 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
2231770 GCATCATTTCATGCATTTTTAGTTATT
1 GCATCCTTTCATGC---CTTA---A-T
2231797 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
2231817 ACATCCTTTCATGCATTTTTAGTTAT
1 GCATCCTTTCATGC---CTTA---AT
2231843 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
2231864 GCATCCTTTCATGC
1 GCATCCTTTCATGC
2231878 ATTTTTAGTT
Statistics
Matches: 193, Mismatches: 21, Indels: 68
0.68 0.07 0.24
Matches are distributed among these distances:
20 78 0.40
21 10 0.05
22 3 0.02
23 12 0.06
24 15 0.08
25 3 0.02
26 18 0.09
27 54 0.28
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.43
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:2231721 original size:47 final size:47
Alignment explanation
Indices: 2231606--2232005 Score: 586
Period size: 47 Copynumber: 8.4 Consensus size: 47
2231596 ACATTTAAAA
* *
2231606 TATGGCATCCTATCATGCCTTAATGCATCCTTCCATGCA-TTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
* *
2231652 TATGACATCCTTTCATGACTTAATGCATCCTTTCATGCATTTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
*
2231699 TATGGCATCCTTTCACGCCTTAATGCATCCTTTCATGCATTTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
*
2231746 TATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
* *
2231793 TATTGCATCCTTTCATGCCTTAATACATCCTTTCATGCATTTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
2231840 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
* * * *
2231887 TATGGAATACTTTCATGCATTTTTAGTTATGGCATCCTTTCATTCATTTTTAGT
1 TATGGCATCCTTTCATGC---CTTA---AT-GCATCCTTTCATGCATTTTTAGT
* * * *
2231941 TATGGCATCCATTCATGCCTTAATGTATCATTTCAAGCATTTTTAGT
1 TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
2231988 TATGGCATCCTTTCATGC
1 TATGGCATCCTTTCATGC
2232006 ATTTTTAGTT
Statistics
Matches: 319, Mismatches: 27, Indels: 15
0.88 0.07 0.04
Matches are distributed among these distances:
46 35 0.11
47 237 0.74
48 2 0.01
50 3 0.01
51 3 0.01
53 2 0.01
54 37 0.12
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.44
Consensus pattern (47 bp):
TATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTTAGT
Found at i:2231761 original size:27 final size:27
Alignment explanation
Indices: 2231723--2232079 Score: 307
Period size: 27 Copynumber: 14.5 Consensus size: 27
2231713 ACGCCTTAAT
2231723 GCATCCTTTCATGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2231750 GCATCCTTTCATGC---CTTA---AT-
1 GCATCCTTTCATGCATTTTTAGTTATG
* *
2231770 GCATCATTTCATGCATTTTTAGTTATT
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2231797 GCATCCTTTCATGC---CTTA---AT-
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2231817 ACATCCTTTCATGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2231844 GCATCCTTTCATGC---CTTA---AT-
1 GCATCCTTTCATGCATTTTTAGTTATG
2231864 GCATCCTTTCATGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
* *
2231891 GAATACTTTCATGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2231918 GCATCCTTTCATTCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
* *
2231945 GCATCCATTCATGC---CTTA---AT-
1 GCATCCTTTCATGCATTTTTAGTTATG
* * *
2231965 GTATCATTTCAAGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
2231992 GCATCCTTTCATGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
* *
2232019 GAATCCTTTCATGC---CTTA---AT-
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2232039 GCATCATTTCATGCATTTTTAGTTATG
1 GCATCCTTTCATGCATTTTTAGTTATG
*
2232066 GAATCCTTTCATGC
1 GCATCCTTTCATGC
2232080 CTTAATGCAT
Statistics
Matches: 262, Mismatches: 33, Indels: 70
0.72 0.09 0.19
Matches are distributed among these distances:
20 62 0.24
21 10 0.04
23 15 0.06
24 15 0.06
26 10 0.04
27 150 0.57
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (27 bp):
GCATCCTTTCATGCATTTTTAGTTATG
Found at i:2231855 original size:74 final size:74
Alignment explanation
Indices: 2231770--2232079 Score: 359
Period size: 74 Copynumber: 4.2 Consensus size: 74
2231760 ATGCCTTAAT
* * *
2231770 GCATCATTTCATGCATTTTTAGTTATTGCATCCTTTCATGCCTTAATACATCCTTTCATGCATTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACATCATTTCATGCATTT
2231835 TTAGTTATG
66 TTAGTTATG
* *
2231844 GCATCCTTTCATGC---CTTA---AT-GCATCCTTTCATGCATTTTTAGTTATGGA-AT-ACTTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGC---CTTA---AT--ACATCA-TTT
2231900 CATGCATTTTTAGTTATG
57 CATGCATTTTTAGTTATG
* * ** *
2231918 GCATCCTTTCATTCATTTTTAGTTATGGCATCCATTCATGCCTTAATGTATCATTTCAAGCATTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACATCATTTCATGCATTT
2231983 TTAGTTATG
66 TTAGTTATG
* *
2231992 GCATCCTTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAATGCATCATTTCATGCATTT
1 GCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACATCATTTCATGCATTT
2232057 TTAGTTATG
66 TTAGTTATG
*
2232066 GAATCCTTTCATGC
1 GCATCCTTTCATGC
2232080 CTTAATGCAT
Statistics
Matches: 202, Mismatches: 16, Indels: 36
0.80 0.06 0.14
Matches are distributed among these distances:
67 14 0.07
68 2 0.01
70 3 0.01
71 3 0.01
73 2 0.01
74 153 0.76
75 4 0.02
77 3 0.01
78 3 0.01
80 2 0.01
81 13 0.06
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (74 bp):
GCATCCTTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATACATCATTTCATGCATTT
TTAGTTATG
Found at i:2232043 original size:47 final size:47
Alignment explanation
Indices: 2231992--2232111 Score: 231
Period size: 47 Copynumber: 2.6 Consensus size: 47
2231982 TTTAGTTATG
*
2231992 GCATCCTTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAT
1 GCATCATTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAT
2232039 GCATCATTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAT
1 GCATCATTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAT
2232086 GCATCATTTCATGCATTTTTAGTTAT
1 GCATCATTTCATGCATTTTTAGTTAT
2232112 TCTCTAAAAC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (47 bp):
GCATCATTTCATGCATTTTTAGTTATGGAATCCTTTCATGCCTTAAT
Found at i:2232050 original size:20 final size:20
Alignment explanation
Indices: 2232025--2232099 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 20
2232015 TATGGAATCC
2232025 TTTCATGCCTTAATGCATCA
1 TTTCATGCCTTAATGCATCA
* * *
2232045 TTTCATGCATTTTTAGTTATGGAATCC
1 TTTCATGC---CTTA---AT-GCATCA
2232072 TTTCATGCCTTAATGCATCA
1 TTTCATGCCTTAATGCATCA
2232092 TTTCATGC
1 TTTCATGC
2232100 ATTTTTAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
20 20 0.48
21 2 0.05
23 3 0.07
24 3 0.07
26 2 0.05
27 12 0.29
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTCATGCCTTAATGCATCA
Found at i:2232698 original size:96 final size:95
Alignment explanation
Indices: 2232476--2232699 Score: 238
Period size: 95 Copynumber: 2.3 Consensus size: 95
2232466 CCAGACTCCA
* * ** * *
2232476 TAGTATCGATACTAC-TACCATAGTACTGATACTTTTATACTATGGTACTGATACCCCCTTTCGG
1 TAGTATCGATAC-CCTTACCATAGTATTGATACTACTATACTATGGTACCGATACCCCCTTACGG
*
2232540 TATCGATATCGAAATTAGGTTCGATATTCCC
65 TATCGATATCGAAATTAGATTCGATATTCCC
* * *
2232571 TAGTATCGATACCCTTACCATTGTATCGATACTACTATATTATGGTACCGATAACCCCC-TACGG
1 TAGTATCGATACCCTTACCATAGTATTGATACTACTATACTATGGTACCGAT-ACCCCCTTACGG
* * * * *
2232635 TATCGATA-CTAAACTTATATTCGATGTTTTCT
65 TATCGATATCGAAA-TTAGATTCGAT-ATTCCC
* *
2232667 TGGTATCGATACCCTTACCATGGTATTGATACT
1 TAGTATCGATACCCTTACCATAGTATTGATACT
2232700 GCCTTAATGG
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
94 5 0.05
95 63 0.59
96 39 0.36
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (95 bp):
TAGTATCGATACCCTTACCATAGTATTGATACTACTATACTATGGTACCGATACCCCCTTACGGT
ATCGATATCGAAATTAGATTCGATATTCCC
Found at i:2232719 original size:20 final size:20
Alignment explanation
Indices: 2232667--2232719 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
2232657 GATGTTTTCT
2232667 TGGTATCGATAC-CCTTACCA
1 TGGTATCGATACTCCTTA-CA
*
2232687 TGGTATTGATACTGCCTTA-A
1 TGGTATCGATACT-CCTTACA
2232707 TGGTATCGATACT
1 TGGTATCGATACT
2232720 AATTGAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 24 0.83
22 5 0.17
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (20 bp):
TGGTATCGATACTCCTTACA
Found at i:2237416 original size:15 final size:16
Alignment explanation
Indices: 2237390--2237420 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
2237380 AAAGATTCTG
2237390 ACATATATAATAACAT
1 ACATATATAATAACAT
2237406 ACATA-ATAATAACAT
1 ACATATATAATAACAT
2237421 TTCAATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (16 bp):
ACATATATAATAACAT
Found at i:2237631 original size:2 final size:2
Alignment explanation
Indices: 2237626--2237665 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
2237616 GGTGTCACAT
2237626 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2237666 AAACCATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2238185 original size:20 final size:20
Alignment explanation
Indices: 2238162--2238232 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 20
2238152 TGGCATCCTA
*
2238162 TCATGCCTTAATGCATCGTT
1 TCATGCCTTAATGCATCATT
* *
2238182 TCATGCATTTTAGTTATGGCATCCTT
1 TCATGC--CTTA---AT-GCATCATT
2238208 TCATGCCTTAATGCATCATT
1 TCATGCCTTAATGCATCATT
2238228 TCATG
1 TCATG
2238233 AATTTTTAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
20 18 0.44
21 2 0.05
22 3 0.07
24 3 0.07
25 2 0.05
26 13 0.32
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (20 bp):
TCATGCCTTAATGCATCATT
Found at i:2238261 original size:47 final size:47
Alignment explanation
Indices: 2238149--2238479 Score: 470
Period size: 47 Copynumber: 7.1 Consensus size: 47
2238139 TACATTTAAA
* *
2238149 TTATGGCATCCTATCATGCCTTAATGCATCGTTTCATGCA-TTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
*
2238195 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGAATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* * *
2238242 TTATGGCATCTTTTTATGCCTTAATGCATCCTTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* * * *
2238289 TTATGACATCATTTCACGCCTTAATGTATTC-TTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCA-TCATTTCATGCATTTTTAG
* *
2238336 TTATGGTATCCTTTCATGCCTTAATGCATCGTTTCATGC-TTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
* * * * *
2238382 TTCTTGCATCCTTTCATACCTTAATACATCCTTTCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
*
2238429 TTATGGCATCCTTTCATGCCTTAATGCATCATTGCATGCATTTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
2238476 TTAT
1 TTAT
2238480 CTCTAAAACT
Statistics
Matches: 252, Mismatches: 29, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
46 79 0.31
47 171 0.68
48 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (47 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTTAG
Found at i:2238329 original size:140 final size:140
Alignment explanation
Indices: 2238166--2238479 Score: 461
Period size: 140 Copynumber: 2.2 Consensus size: 140
2238156 ATCCTATCAT
*
2238166 GCCTTAATGCATCGTTTCATGCA-TTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTC
1 GCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTC
* * * *
2238230 ATGAATTTTTAGTTATGGCATCTTTTTATGCCTTAATGCATCCTTTCATGCATTTTTAGTTATGA
66 ATG-ATTTTTAGTTATGGCATCCTTTCATACCTTAATACATCCTTTCATGCATTTTTAGTTATGA
2238295 CATCATTTCAC
130 CATCATTTCAC
* * *
2238306 GCCTTAATGTATTC-TTTCATGCATTTTTAGTTATGGTATCCTTTCATGCCTTAATGCATCGTTT
1 GCCTTAATGCA-TCATTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTT
* * * *
2238370 CATGCTTTTTAGTTCTTGCATCCTTTCATACCTTAATACATCCTTTCATGCATTTTTAGTTATGG
65 CATGATTTTTAGTTATGGCATCCTTTCATACCTTAATACATCCTTTCATGCATTTTTAGTTATGA
* *
2238435 CATCCTTTCAT
130 CATCATTTCAC
*
2238446 GCCTTAATGCATCATTGCATGCATTTTTAGTTAT
1 GCCTTAATGCATCATTTCATGCATTTTTAGTTAT
2238480 CTCTAAAACT
Statistics
Matches: 156, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
139 2 0.01
140 110 0.71
141 44 0.28
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (140 bp):
GCCTTAATGCATCATTTCATGCATTTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTC
ATGATTTTTAGTTATGGCATCCTTTCATACCTTAATACATCCTTTCATGCATTTTTAGTTATGAC
ATCATTTCAC
Found at i:2238427 original size:93 final size:93
Alignment explanation
Indices: 2238149--2238477 Score: 464
Period size: 93 Copynumber: 3.5 Consensus size: 93
2238139 TACATTTAAA
* *
2238149 TTATGGCATCCTATCATGCCTTAATGCATCGTTTCATGCA-TTTTAGTTATGGCATCCTTTCATG
1 TTATGGCATCCTTTCATGCCTTAATGCATCGTTTCATGCATTTTTAGTT-TTGCATCCTTTCATG
* *
2238213 CCTTAATGCATCATTTCATGAATTTTTAG
65 CCTTAATGCATCCTTTCATGCATTTTTAG
* * * * * *
2238242 TTATGGCATCTTTTTATGCCTTAATGCATCCTTTCATGCATTTTTAGTTATGACATCATTTCACG
1 TTATGGCATCCTTTCATGCCTTAATGCATCGTTTCATGCATTTTTAGTTTTG-CATCCTTTCATG
* *
2238307 CCTTAATGTATTCTTTCATGCATTTTTAG
65 CCTTAATGCATCCTTTCATGCATTTTTAG
* *
2238336 TTATGGTATCCTTTCATGCCTTAATGCATCGTTTCATGC-TTTTTAGTTCTTGCATCCTTTCATA
1 TTATGGCATCCTTTCATGCCTTAATGCATCGTTTCATGCATTTTTAGTT-TTGCATCCTTTCATG
*
2238400 CCTTAATACATCCTTTCATGCATTTTTAG
65 CCTTAATGCATCCTTTCATGCATTTTTAG
* *
2238429 TTATGGCATCCTTTCATGCCTTAATGCATCATTGCATGCATTTTTAGTT
1 TTATGGCATCCTTTCATGCCTTAATGCATCGTTTCATGCATTTTTAGTT
2238478 ATCTCTAAAA
Statistics
Matches: 206, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
93 117 0.57
94 89 0.43
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (93 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCGTTTCATGCATTTTTAGTTTTGCATCCTTTCATGC
CTTAATGCATCCTTTCATGCATTTTTAG
Found at i:2241186 original size:29 final size:29
Alignment explanation
Indices: 2241151--2241235 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 29
2241141 TTTGGTTAAT
2241151 GACTAAAATATAAATTTTGAAAGTTTAGTA
1 GACTAAAATATAAATTTTGAAAGTTTAG-A
* * *
2241181 G-CTAAAGTATAAATTTGGAAAAGTTTAGG
1 GACTAAAATATAAATTTTG-AAAGTTTAGA
* *
2241210 GACTAAAAACATAATTTTTGAAAGTT
1 GACT-AAAATATAAATTTTGAAAGTT
2241236 ATGTATTTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
29 16 0.36
30 18 0.40
31 11 0.24
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (29 bp):
GACTAAAATATAAATTTTGAAAGTTTAGA
Found at i:2245273 original size:20 final size:20
Alignment explanation
Indices: 2245235--2245278 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
2245225 GTAGCTGCAG
* *
2245235 GATCAAGCAAATCGGGTCAC
1 GATCAAGCAAATCGAGTCAA
* *
2245255 GATCAAGCAGATCTAGTCAA
1 GATCAAGCAAATCGAGTCAA
2245275 GATC
1 GATC
2245279 TAACTTGTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (20 bp):
GATCAAGCAAATCGAGTCAA
Done.