Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3900615
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 19
Found at i:1049670 original size:27 final size:27
Alignment explanation
Indices: 1049632--1049695 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
1049622 TCGAAGCAAA
1049632 CGGCACAATTATGATGCATAGCTTTTT
1 CGGCACAATTATGATGCATAGCTTTTT
1049659 CGGCACAATTATGATGCATAGCTTTTT
1 CGGCACAATTATGATGCATAGCTTTTT
**
1049686 CAACACAATT
1 CGGCACAATT
1049696 GTGGGAGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (27 bp):
CGGCACAATTATGATGCATAGCTTTTT
Found at i:1050779 original size:3 final size:3
Alignment explanation
Indices: 1050700--1050768 Score: 70
Period size: 3 Copynumber: 23.0 Consensus size: 3
1050690 TTTACTTAAT
** * *
1050700 TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TAA GTA TTA -TA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1050746 TTA TATA TTA TATA TTA TTA TTA
1 TTA T-TA TTA T-TA TTA TTA TTA
1050769 AATAATTATT
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
2 4 0.07
3 44 0.81
4 6 0.11
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:1052053 original size:3 final size:3
Alignment explanation
Indices: 1052045--1052074 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
1052035 TTTACTTTTA
*
1052045 ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1052075 TAGCCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:1052381 original size:29 final size:30
Alignment explanation
Indices: 1052348--1052405 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
1052338 ATATTTCTAA
1052348 ATAAA-TAA-ATATTTTATTTATAAATATAT
1 ATAAATTAATATATTTT-TTTATAAATATAT
*
1052377 ATAAATTAATATATTTTTTTATAATTATA
1 ATAAATTAATATATTTTTTTATAAATATA
1052406 ATTTGAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.19
30 14 0.54
31 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
ATAAATTAATATATTTTTTTATAAATATAT
Found at i:1058234 original size:19 final size:20
Alignment explanation
Indices: 1058202--1058243 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
1058192 AAAAAAAGGG
* *
1058202 AAAAAAATGAAAAAATGAAA
1 AAAAAAAAGAAAAAAGGAAA
1058222 AAAAAAAAG-AAAAAGGAAA
1 AAAAAAAAGAAAAAAGGAAA
1058241 AAA
1 AAA
1058244 TTGAACCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (20 bp):
AAAAAAAAGAAAAAAGGAAA
Found at i:1058778 original size:32 final size:32
Alignment explanation
Indices: 1058742--1058803 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
1058732 GTCAGACACA
1058742 AGAAGTATCTCTATC-AGATGAACATAACAACG
1 AGAAGTATCTCTA-CAAGATGAACATAACAACG
*
1058774 AGAAGTATCTCTACAAGATGAGCATAACAA
1 AGAAGTATCTCTACAAGATGAACATAACAA
1058804 TCATTTCTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (32 bp):
AGAAGTATCTCTACAAGATGAACATAACAACG
Found at i:1062774 original size:50 final size:50
Alignment explanation
Indices: 1062641--1062790 Score: 169
Period size: 50 Copynumber: 2.9 Consensus size: 50
1062631 CCAGCAATTC
* *
1062641 GAGCAGAAGCCACAGAAAA-TGATGAATGTGTTGTCAAATGCTTTACGAACATCT
1 GAGCAGAAACCACAGAAAAGT-ATGAATGTGTTGTCAAATG-TTT---TACATCT
*
1062695 GAGCAGAAACCACAGAAAAGTATGAATGTGTTGTCAAGTGTTTTACATCT
1 GAGCAGAAACCACAGAAAAGTATGAATGTGTTGTCAAATGTTTTACATCT
* * * *
1062745 GAGCATAAACCACATGAGATG-ATGCATGTGTTGTCAAATGTTTTAC
1 GAGCAGAAACCACA-GAAAAGTATGAATGTGTTGTCAAATGTTTTAC
1062791 TAACCAGTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
50 42 0.49
51 4 0.05
53 3 0.03
54 36 0.42
55 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
GAGCAGAAACCACAGAAAAGTATGAATGTGTTGTCAAATGTTTTACATCT
Found at i:1063189 original size:22 final size:22
Alignment explanation
Indices: 1063160--1063214 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
1063150 ATCTACACTC
1063160 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* *
1063182 TTTAAAGATAATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1063204 TTCAAAGATGA
1 TTCAAAGATGA
1063215 AAGCTTTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1063990 original size:76 final size:76
Alignment explanation
Indices: 1063891--1064129 Score: 433
Period size: 76 Copynumber: 3.1 Consensus size: 76
1063881 CTATTTCCCA
* * *
1063891 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGAGATCTTTTTGAGGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1063956 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1063967 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1064032 AGCCTTAGGGT
66 AGCCTTAGGGT
1064043 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1064108 AGCCTTAGGAT
66 AGCCTTAGGGT
1064119 CATCTGTAAGT
1 CATCTGTAAGT
1064130 TTTTTGATGT
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 157 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1064142 original size:38 final size:38
Alignment explanation
Indices: 1064092--1064167 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
1064082 CTTCGGGAGC
1064092 TTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
1 TTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
*
1064130 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
1 TTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
1064168 CCTGCAGTGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (38 bp):
TTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
Found at i:1064216 original size:114 final size:114
Alignment explanation
Indices: 1064016--1064243 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
1064006 CTTCGGGAGC
1064016 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064081 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
66 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
1064130 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
* *
1064195 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCTTCTGTAAGT
66 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
1064244 CCTGAAGTGC
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (114 bp):
TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
Found at i:1064263 original size:190 final size:190
Alignment explanation
Indices: 1063940--1064319 Score: 715
Period size: 190 Copynumber: 2.0 Consensus size: 190
1063930 CTTCGAGATC
1063940 TTTTTGAGGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAG
1 TTTTTGAGGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAG
*
1064005 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATG
66 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGAAGTGCATGATG
1064070 TTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
131 TTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
* *
1064130 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGAGGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAG
*
1064195 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCTTCTGTAAGTCCTGAAGTGCATGATG
66 CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGAAGTGCATGATG
*
1064260 TTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGT
131 TTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
1064320 CCTGCAGTGC
Statistics
Matches: 185, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
190 185 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (190 bp):
TTTTTGAGGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAG
CCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGAAGTGCATGATG
TTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
Found at i:1064335 original size:266 final size:266
Alignment explanation
Indices: 1063891--1064395 Score: 940
Period size: 266 Copynumber: 1.9 Consensus size: 266
1063881 CTATTTCCCA
*
1063891 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGAGATCTTTTTGAGGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGAGGTTTTCAA
1063956 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
1064021 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTC
131 GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTC
1064086 GGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGTTTTTTGATGTTTTCAAAGCCT
196 GGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGTTTTTTGATGTTTTCAAAGCCT
1064151 TAGGGT
261 TAGGGT
* *
1064157 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGAGGTTTTCAA
*
1064222 AGCCTTAGGGTCTTCTGTAAGTCCTGA-AGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCT-ACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
1064286 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTT
130 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTT
* *
1064351 CGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCTTCTGTAAGT
195 CGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGT
1064396 CCTGAAGTGC
Statistics
Matches: 232, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
266 231 1.00
267 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (266 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGAGGTTTTCAA
AGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
GATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTC
GGGAGCTTTTTGATGTTTTCAAAGCCTTAGGATCATCTGTAAGTTTTTTGATGTTTTCAAAGCCT
TAGGGT
Found at i:1065025 original size:76 final size:76
Alignment explanation
Indices: 1064130--1065024 Score: 1558
Period size: 76 Copynumber: 11.8 Consensus size: 76
1064120 ATCTGTAAGT
1064130 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064195 CCTTCGGGAGC
66 CCTTCGGGAGC
* *
1064206 TTTTTGATGTTTTCAAAGCCTTAGGGTCTTCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064271 CCTTCGGGAGC
66 CCTTCGGGAGC
1064282 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064347 CCTTCGGGAGC
66 CCTTCGGGAGC
* *
1064358 TTTTTGATGTTTTCAAAGCCTTAGGGTCTTCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064423 CCTTCGGGAGC
66 CCTTCGGGAGC
1064434 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064499 CCTTCGGGAGC
66 CCTTCGGGAGC
1064510 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064575 CCTTCGGGAGC
66 CCTTCGGGAGC
* *
1064586 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGCTGTTTCTAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064651 CCTTCGGGAGC
66 CCTTCGGGAGC
* *
1064662 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGAATGATGTTTCCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
1064727 CCTTCGGGAGC
66 CCTTCGGGAGC
* * *
1064738 GTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAG
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
*
1064803 CCTTCGGGAAC
66 CCTTCGGGAGC
* * * *
1064814 TTTTTGATGTTTTCAAAACCTTCGGGTCAT-TCATAAGTCTTGCAGTGCATGATGTTTCCAAAAA
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCT-GTAAGTCCTGCAGTGCATGATGTTTCCAAAAA
1064878 GCCTTCGGGAGC
65 GCCTTCGGGAGC
* *
1064890 TTTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAA
1 --TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAA
1064955 AGCCTTCGGGAGC
64 AGCCTTCGGGAGC
* * * *
1064968 TTTTTGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTT
1 TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTT
1065025 TTAAGACCTC
Statistics
Matches: 779, Mismatches: 36, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
75 1 0.00
76 709 0.91
78 68 0.09
79 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (76 bp):
TTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAG
CCTTCGGGAGC
Found at i:1065251 original size:24 final size:25
Alignment explanation
Indices: 1065180--1065252 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 25
1065170 TTTACTTAAT
1065180 TTATTATTATT-AA-AATTATTATTA
1 TTATTATTATTAAATAATTA-TATTA
*
1065204 TTATTATTATAAATATTATTATTATATTA
1 TTATTATTATTAA-A-TA--ATTATATTA
1065233 -TATTATTATTAAATAATTAT
1 TTATTATTATTAAATAATTAT
1065253 TACAAGCCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
24 15 0.37
25 1 0.02
26 3 0.07
27 1 0.02
28 12 0.29
29 5 0.12
30 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTATTATTATTAAATAATTATATTA
Found at i:1065254 original size:3 final size:3
Alignment explanation
Indices: 1065180--1065243 Score: 78
Period size: 3 Copynumber: 22.0 Consensus size: 3
1065170 TTTACTTAAT
** * *
1065180 TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA TAA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1065228 -TA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
1065244 AATAATTATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
2 4 0.08
3 47 0.92
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:1066841 original size:18 final size:18
Alignment explanation
Indices: 1066817--1066856 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
1066807 TTAGTCATAA
*
1066817 ATATATATATATATATATTT
1 ATATA-ATAAATA-ATATTT
1066837 ATATAATAAATAATATTT
1 ATATAATAAATAATATTT
1066855 AT
1 AT
1066857 TTTATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATAATAAATAATATTT
Found at i:1067126 original size:29 final size:31
Alignment explanation
Indices: 1067091--1067152 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
1067081 CTGATATTTC
* *
1067091 TAAATAAATAAATATTTTATTTATAAATATATA
1 TAAATTAATATATA-TTT-TTTATAAATATATA
*
1067124 TAAATTAATATATATTTTTTATAATTATA
1 TAAATTAATATATATTTTTTATAAATATA
1067153 ATTTTGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 11 0.42
32 3 0.12
33 12 0.46
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (31 bp):
TAAATTAATATATATTTTTTATAAATATATA
Found at i:1083607 original size:21 final size:21
Alignment explanation
Indices: 1083583--1083625 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
1083573 ATGAGAGCTT
1083583 ATATCAATCTATTCTCTTAGG
1 ATATCAATCTATTCTCTTAGG
* *
1083604 ATATCGATTTATTCTCTTAGG
1 ATATCAATCTATTCTCTTAGG
1083625 A
1 A
1083626 CATTCTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (21 bp):
ATATCAATCTATTCTCTTAGG
Found at i:1083642 original size:34 final size:34
Alignment explanation
Indices: 1083603--1083701 Score: 148
Period size: 34 Copynumber: 2.9 Consensus size: 34
1083593 ATTCTCTTAG
1083603 GATATCGATTTATTCTCTTAGGACATTCTTTC-A
1 GATATCGATTTATTCTCTTAGGACATTCTTTCAA
1083636 GAATATCGATTTATTCTCTTA-GACTATTCTTTCAA
1 G-ATATCGATTTATTCTCTTAGGAC-ATTCTTTCAA
* *
1083671 GATATCGAATTATTCTCTTAGGATATTCTTT
1 GATATCGATTTATTCTCTTAGGACATTCTTT
1083702 TAAAAAAATC
Statistics
Matches: 60, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
33 4 0.07
34 52 0.87
35 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.46
Consensus pattern (34 bp):
GATATCGATTTATTCTCTTAGGACATTCTTTCAA
Found at i:1086813 original size:13 final size:13
Alignment explanation
Indices: 1086795--1086821 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1086785 ATGAATAGAG
1086795 AATAGTGAACAAT
1 AATAGTGAACAAT
1086808 AATAGTGAACAAT
1 AATAGTGAACAAT
1086821 A
1 A
1086822 CCGTGAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
AATAGTGAACAAT
Found at i:1087407 original size:47 final size:45
Alignment explanation
Indices: 1087325--1087456 Score: 160
Period size: 47 Copynumber: 2.9 Consensus size: 45
1087315 AAAATAATAT
* * *
1087325 AAAATATCTTACCATTTATCCCATAAGCTCTTAAGCTTGTTTTACC
1 AAAATA-CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACC
*
1087371 AAAATACTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTATC
1 AAAATACTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACC
* **
1087418 AATATACTTGTCA-TTATT-CATAAGCTCGTAAGCTTATTT
1 AAAATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
1087457 GCATACTTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
43 21 0.27
44 3 0.04
45 10 0.13
46 8 0.10
47 35 0.45
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.40
Consensus pattern (45 bp):
AAAATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACC
Found at i:1095726 original size:1 final size:1
Alignment explanation
Indices: 1095715--1095807 Score: 60
Period size: 1 Copynumber: 93.0 Consensus size: 1
1095705 CTCATTCATC
* * * ** * ** * * * *
1095715 AAAAAAGAAAAAAATAAAAAAAATAAAAGGACAAAAAGGACAAAAAAGAAAAAAGAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
1095780 AAAAAAAAAAAAGAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1095808 GAAAGAAATT
Statistics
Matches: 68, Mismatches: 24, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02
Consensus pattern (1 bp):
A
Found at i:1095727 original size:7 final size:7
Alignment explanation
Indices: 1095715--1095811 Score: 69
Period size: 7 Copynumber: 13.4 Consensus size: 7
1095705 CTCATTCATC
1095715 AAAAAAG
1 AAAAAAG
1095722 AAAAAA-
1 AAAAAAG
*
1095728 ATAAAAAA
1 A-AAAAAG
1095736 AATAAAAGG
1 AA-AAAA-G
1095745 ACAAAAAGG
1 A-AAAAA-G
1095754 ACAAAAAAG
1 --AAAAAAG
1095763 AAAAAAG
1 AAAAAAG
1095770 AAAGAAA-
1 AAA-AAAG
1095777 AAAAAA-
1 AAAAAAG
1095783 AAAAAA-
1 AAAAAAG
*
1095789 AAAGAA-
1 AAAAAAG
1095795 AAAAAAG
1 AAAAAAG
1095802 AAAAAAG
1 AAAAAAG
1095809 AAA
1 AAA
1095812 GAAATTGAAT
Statistics
Matches: 78, Mismatches: 3, Indels: 18
0.79 0.03 0.18
Matches are distributed among these distances:
6 20 0.26
7 35 0.45
8 8 0.10
9 8 0.10
10 6 0.08
11 1 0.01
ACGTcount: A:0.85, C:0.02, G:0.11, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:1095773 original size:11 final size:10
Alignment explanation
Indices: 1095715--1095815 Score: 100
Period size: 11 Copynumber: 10.0 Consensus size: 10
1095705 CTCATTCATC
1095715 AAAAAAGAAA
1 AAAAAAGAAA
*
1095725 AAAATAAAAAA
1 AAAA-AAGAAA
*
1095736 AATAAAAG-GA
1 AA-AAAAGAAA
* * *
1095746 CAAAAAGGAC
1 AAAAAAGAAA
1095756 AAAAAAGAAA
1 AAAAAAGAAA
1095766 AAAGAAAGAAA
1 AAA-AAAGAAA
1095777 AAAAAA-AAA
1 AAAAAAGAAA
1095786 AAAAAAG-AA
1 AAAAAAGAAA
1095795 AAAAAAGAAA
1 AAAAAAGAAA
1095805 AAAGAAAGAAA
1 AAA-AAAGAAA
1095816 TTGAATCAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 13
0.77 0.09 0.13
Matches are distributed among these distances:
9 23 0.31
10 24 0.32
11 26 0.35
12 2 0.03
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:1095778 original size:19 final size:19
Alignment explanation
Indices: 1095756--1095815 Score: 93
Period size: 19 Copynumber: 3.1 Consensus size: 19
1095746 CAAAAAGGAC
1095756 AAAAAAGAAAAAAGAAAGA
1 AAAAAAGAAAAAAGAAAGA
* *
1095775 AAAAAAAAAAAAAAAAAGAA
1 AAAAAAGAAAAAAGAAAG-A
1095795 AAAAAAGAAAAAAGAAAGA
1 AAAAAAGAAAAAAGAAAGA
1095814 AA
1 AA
1095816 TTGAATCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
19 19 0.53
20 17 0.47
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAAAAAGAAAGA
Found at i:1095790 original size:39 final size:41
Alignment explanation
Indices: 1095714--1095815 Score: 131
Period size: 39 Copynumber: 2.5 Consensus size: 41
1095704 ACTCATTCAT
* *
1095714 CAAAAAAGAAAAAA-ATAA-AAAAAATAAAAGGACAAAAAGGA
1 CAAAAAAGAAAAAAGA-AAGAAAAAATAAAA-GAAAAAAAAGA
1095755 CAAAAAAGAAAAAAGAAAGAAAAAA-AAAA-AAAAAAAAGA
1 CAAAAAAGAAAAAAGAAAGAAAAAATAAAAGAAAAAAAAGA
*
1095794 AAAAAAAGAAAAAAGAAAGAAA
1 CAAAAAAGAAAAAAGAAAGAAA
1095816 TTGAATCAAG
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
39 29 0.52
41 20 0.36
42 7 0.12
ACGTcount: A:0.83, C:0.03, G:0.12, T:0.02
Consensus pattern (41 bp):
CAAAAAAGAAAAAAGAAAGAAAAAATAAAAGAAAAAAAAGA
Found at i:1097939 original size:54 final size:54
Alignment explanation
Indices: 1097834--1097939 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
1097824 CATTGACAAG
*
1097834 AAATCTGGGCAGAAGCCACAGGAATGGATGAATGTACTGTCAAATATTTTACGA
1 AAATCTGGGCAGAAGCCACAGGAATGGATGAATGTACTGTCAAATACTTTACGA
** *
1097888 AAATCTGGGCAGAAGCCACAGGAAAT-GATGAATGTGTTGTCAAATGCTTTAC
1 AAATCTGGGCAGAAGCCACAGG-AATGGATGAATGTACTGTCAAATACTTTAC
1097940 CAACTAGTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
54 44 0.94
55 3 0.06
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (54 bp):
AAATCTGGGCAGAAGCCACAGGAATGGATGAATGTACTGTCAAATACTTTACGA
Found at i:1098899 original size:40 final size:40
Alignment explanation
Indices: 1098855--1098975 Score: 206
Period size: 40 Copynumber: 3.0 Consensus size: 40
1098845 TTTATCTTAC
*
1098855 TCAAGATTGCTTTTCCTTGAAACAGAAGATTTTATCTCGT
1 TCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGT
*
1098895 TCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATTTCGT
1 TCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGT
* *
1098935 TCAAGATTGTTTTTCCTTGAAACAAAACATTTTATCTCGT
1 TCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGT
1098975 T
1 T
1098976 TGAGACGGTT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (40 bp):
TCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGT
Found at i:1098932 original size:23 final size:23
Alignment explanation
Indices: 1098866--1098932 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
1098856 CAAGATTGCT
1098866 TTTCCTTGAAACAGAAGATTTTA
1 TTTCCTTGAAACAGAAGATTTTA
* *
1098889 TCTCGTT----C--AAGATTGTT-
1 TTTCCTTGAAACAGAAGATT-TTA
1098906 TTTCCTTGAAACAGAAGATTTTA
1 TTTCCTTGAAACAGAAGATTTTA
1098929 TTTC
1 TTTC
1098933 GTTCAAGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 16
0.62 0.08 0.31
Matches are distributed among these distances:
17 11 0.34
18 2 0.06
19 1 0.03
21 1 0.03
22 2 0.06
23 15 0.47
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (23 bp):
TTTCCTTGAAACAGAAGATTTTA
Found at i:1099015 original size:36 final size:36
Alignment explanation
Indices: 1098975--1099053 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
1098965 TTTATCTCGT
*
1098975 TTGAGACGGTTTCCCATGAAACAAATTTTGTCTCCC
1 TTGAGACGGGTTCCCATGAAACAAATTTTGTCTCCC
*
1099011 TTGAGACGGGTTCCCTTGAAACAAATTTTGTCTCCC
1 TTGAGACGGGTTCCCATGAAACAAATTTTGTCTCCC
1099047 TTGAGAC
1 TTGAGAC
1099054 AATTTCACTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (36 bp):
TTGAGACGGGTTCCCATGAAACAAATTTTGTCTCCC
Found at i:1099065 original size:36 final size:36
Alignment explanation
Indices: 1098991--1099069 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
1098981 CGGTTTCCCA
** *
1098991 TGAAACAAATTTTGTCTCCCTTGAGACGGGTTCCCT
1 TGAAACAAATTTTGTCTCCCTTGAGACAAGTTCACT
*
1099027 TGAAACAAATTTTGTCTCCCTTGAGACAATTTCACT
1 TGAAACAAATTTTGTCTCCCTTGAGACAAGTTCACT
1099063 TGAAACA
1 TGAAACA
1099070 GAAGATATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (36 bp):
TGAAACAAATTTTGTCTCCCTTGAGACAAGTTCACT
Found at i:1099099 original size:39 final size:38
Alignment explanation
Indices: 1098866--1099117 Score: 142
Period size: 40 Copynumber: 6.6 Consensus size: 38
1098856 CAAGATTGCT
* **
1098866 TTTCCTTGAAACAGAAGATTTTATCTCG-TTCAAGATTG
1 TTTCCTTGAAACAGAAGATTTTATCTCGCTT-GAGACAG
* * **
1098904 TTTTTCCTTGAAACAGAAGATTTTATTTCG-TTCAAGATTG
1 --TTTCCTTGAAACAGAAGATTTTATCTCGCTT-GAGACAG
* * * *
1098944 TTTTTCCTTGAAACAAAACATTTTATCTCGTTTGAGACGG
1 --TTTCCTTGAAACAGAAGATTTTATCTCGCTTGAGACAG
* * * *
1098984 TTTCCCATGAAAC--AA-ATTTTGTCTCCCTTGAGACGGG
1 TTT-CCTTGAAACAGAAGATTTTATCTCGCTTGAGAC-AG
* * * *
1099021 TTCCCTTGAAAC--AA-ATTTTGTCTCCCTTGAGACAA
1 TTTCCTTGAAACAGAAGATTTTATCTCGCTTGAGACAG
* *
1099056 TTTCACTTGAAACAGAAGATATTATCTCGCTTGAGATAG
1 TTTC-CTTGAAACAGAAGATTTTATCTCGCTTGAGACAG
* * *
1099095 TTTCACTCGAAACACAATATTTT
1 TTTC-CTTGAAACAGAAGATTTT
1099118 TAGAAACTAA
Statistics
Matches: 180, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
35 3 0.02
36 53 0.29
37 6 0.03
38 5 0.03
39 43 0.24
40 68 0.38
41 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (38 bp):
TTTCCTTGAAACAGAAGATTTTATCTCGCTTGAGACAG
Found at i:1099689 original size:3 final size:3
Alignment explanation
Indices: 1099683--1099741 Score: 93
Period size: 3 Copynumber: 19.7 Consensus size: 3
1099673 CTTAAAAAAA
*
1099683 TAT TAT TAA TAT TA- TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
1099728 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
1099742 GTAATATCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 2 0.04
3 48 0.92
4 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:1103132 original size:11 final size:11
Alignment explanation
Indices: 1103116--1103140 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1103106 TACTGAGCTT
1103116 CTCAAAGCTCA
1 CTCAAAGCTCA
1103127 CTCAAAGCTCA
1 CTCAAAGCTCA
1103138 CTC
1 CTC
1103141 TTTGACTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.40, G:0.08, T:0.20
Consensus pattern (11 bp):
CTCAAAGCTCA
Found at i:1104184 original size:7 final size:7
Alignment explanation
Indices: 1104172--1104203 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
1104162 GTATTATTGG
1104172 GATGGCT
1 GATGGCT
1104179 GATGGCT
1 GATGGCT
1104186 GATGGCT
1 GATGGCT
1104193 GATGGCT
1 GATGGCT
1104200 GATG
1 GATG
1104204 CAAGAGCGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.16, C:0.12, G:0.44, T:0.28
Consensus pattern (7 bp):
GATGGCT
Found at i:1108518 original size:34 final size:34
Alignment explanation
Indices: 1108478--1108543 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
1108468 AATGATTTTT
* *
1108478 TAAAAGAATATCCTAAGAGAATAAATTGATATCC
1 TAAAAGAATATCATAAGAAAATAAATTGATATCC
*
1108512 TAAAAGAATATCATAAGAAAATATATTGATAT
1 TAAAAGAATATCATAAGAAAATAAATTGATAT
1108544 AAGCTCTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (34 bp):
TAAAAGAATATCATAAGAAAATAAATTGATATCC
Found at i:1110509 original size:20 final size:21
Alignment explanation
Indices: 1110472--1110510 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
1110462 GATGGCCTTG
*
1110472 ATGAAGGATGTTGATGATGAA
1 ATGAAGGATGGTGATGATGAA
*
1110493 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
1110511 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGAA
Found at i:1110892 original size:19 final size:21
Alignment explanation
Indices: 1110849--1110900 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
1110839 GAAACCCCTT
1110849 TGAAAATACATGATTTTTAAA
1 TGAAAATACATGATTTTTAAA
1110870 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGATTTTTAAA
*
1110889 TGAAGATACATG
1 TGAAAATACATG
1110901 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.06, G:0.13, T:0.35
Consensus pattern (21 bp):
TGAAAATACATGATTTTTAAA
Found at i:1114351 original size:34 final size:32
Alignment explanation
Indices: 1114294--1114365 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 32
1114284 CTTGGCTTAC
*
1114294 TTTC-TTTTTGAATTTCTTTTTCTTTTCT-TCT
1 TTTCTTTTTTGAATTTCTTCTTCTTTT-TGTCT
1114325 TTTCTTTTTCTGAATTTTCTTCTTCTTTTTGTCT
1 TTTCTTTTT-TGAA-TTTCTTCTTCTTTTTGTCT
1114359 TTTCTTT
1 TTTCTTT
1114366 CTTTTTGTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
31 4 0.11
32 4 0.11
33 5 0.14
34 23 0.64
ACGTcount: A:0.06, C:0.17, G:0.04, T:0.74
Consensus pattern (32 bp):
TTTCTTTTTTGAATTTCTTCTTCTTTTTGTCT
Found at i:1115124 original size:19 final size:21
Alignment explanation
Indices: 1115081--1115132 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
1115071 GAAACCCTTT
1115081 TGAAAATACATGATTTTTAAA
1 TGAAAATACATGATTTTTAAA
1115102 TGAAAATACATGA-TTTT-AA
1 TGAAAATACATGATTTTTAAA
*
1115121 TGAAGATACATG
1 TGAAAATACATG
1115133 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 4 0.13
21 13 0.43
ACGTcount: A:0.46, C:0.06, G:0.13, T:0.35
Consensus pattern (21 bp):
TGAAAATACATGATTTTTAAA
Found at i:1118092 original size:2 final size:2
Alignment explanation
Indices: 1118087--1118155 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
1118077 TTTAACCTAA
1118087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1118129 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1118156 AACATTAAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1119497 original size:17 final size:18
Alignment explanation
Indices: 1119455--1119488 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1119445 ATATGAATTG
1119455 GAAATGTGCAATTGATAT
1 GAAATGTGCAATTGATAT
1119473 GAAATGTG-AATT-ATAT
1 GAAATGTGCAATTGATAT
1119489 CGAATTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (18 bp):
GAAATGTGCAATTGATAT
Found at i:1122958 original size:25 final size:25
Alignment explanation
Indices: 1122915--1122991 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
1122905 GATAATATGT
* *
1122915 ATTTAT-TCTCTTAAAATTTTATAA
1 ATTTATCTATCTTTAAATTTTATAA
*
1122939 ATTTATCTATTTTTAAATTTTATAA
1 ATTTATCTATCTTTAAATTTTATAA
1122964 ATTTATCTATCTTTAAATTTTATAA
1 ATTTATCTATCTTTAAATTTTATAA
1122989 ATT
1 ATT
1122992 CGTCTCTCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
24 6 0.12
25 42 0.88
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
ATTTATCTATCTTTAAATTTTATAA
Found at i:1122967 original size:17 final size:17
Alignment explanation
Indices: 1122928--1122991 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
1122918 TATTCTCTTA
*
1122928 AAATTTTATAAATTTAT
1 AAATTTTATAAATTTTT
**
1122945 CTATTTT-TAAATTTTAT
1 AAATTTTATAAATTTT-T
** *
1122962 AAA-TTTATCTATCTTT
1 AAATTTTATAAATTTTT
1122978 AAATTTTATAAATT
1 AAATTTTATAAATT
1122992 CGTCTCTCAA
Statistics
Matches: 33, Mismatches: 11, Indels: 6
0.66 0.22 0.12
Matches are distributed among these distances:
16 14 0.42
17 19 0.58
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
AAATTTTATAAATTTTT
Found at i:1128354 original size:32 final size:32
Alignment explanation
Indices: 1128318--1128380 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
1128308 ATAAAAATAT
1128318 TAATTATTAA-AATA-TATAATATATATATATTA
1 TAATT-TTAATAATATTATAATA-ATATATATTA
* *
1128350 TAATTTTAATGATATTATATTAATATATATT
1 TAATTTTAATAATATTATAATAATATATATT
1128381 CAGTTATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 4 0.15
32 17 0.63
33 6 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (32 bp):
TAATTTTAATAATATTATAATAATATATATTA
Found at i:1128907 original size:30 final size:29
Alignment explanation
Indices: 1128860--1128951 Score: 78
Period size: 30 Copynumber: 3.1 Consensus size: 29
1128850 TTCTTAATGT
* * *
1128860 AAAACAATTTT-AGGTAATTCATCTTATGC
1 AAAACAGTTTTCAAGTAATT-ATTTTATGC
* * * *
1128889 AAAATAGTTTTCATGTAATATATTTTACGT
1 AAAACAGTTTTCAAGTAAT-TATTTTATGC
*
1128919 AGAACAGTTTTCAAGTAATTTATTTTATGC
1 AAAACAGTTTTCAAGTAA-TTATTTTATGC
1128949 AAA
1 AAA
1128952 TTACTTTTTA
Statistics
Matches: 48, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
29 9 0.19
30 37 0.77
31 2 0.04
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (29 bp):
AAAACAGTTTTCAAGTAATTATTTTATGC
Found at i:1138871 original size:125 final size:124
Alignment explanation
Indices: 1138551--1138854 Score: 457
Period size: 124 Copynumber: 2.4 Consensus size: 124
1138541 AAGTTGTGAT
* *
1138551 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGAAGACAAGATTCAGACCAAGGAGGTATTAA
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGTATTAA
* * *
1138616 GAATGAGCCTTACAATTTGAGGTGTTGGGGCATTTTGATGCCCGTACCAGTATAAGATA
66 GAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTGAGGCCCGTACCAGTATAAGATA
* * * *
1138675 ATGTTGGGGCATGACTGAACCCACATCATGTTGAGATGAAAATATTCAGACCAAGGAGGCATAAA
1 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGTATTAA
* *
1138740 GAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTGAAGGCCCTTACCAGTGTAAGATA
66 GAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTG-AGGCCCGTACCAGTATAAGATA
** *
1138800 ATGTTGGGGCGA-GACCAAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAG
1 ATGTTGGGGC-ACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAG
1138855 AAATTATTGA
Statistics
Matches: 163, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
124 94 0.58
125 68 0.42
126 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (124 bp):
ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGTATTAA
GAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTGAGGCCCGTACCAGTATAAGATA
Found at i:1139622 original size:36 final size:36
Alignment explanation
Indices: 1139582--1139736 Score: 213
Period size: 36 Copynumber: 4.3 Consensus size: 36
1139572 AGTCAATCCT
*
1139582 AAGCCTTCACTGGAGAATAGTGAAGCAAACCATCTG
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
* *
1139618 AAGCCTTCACCGGAGAATAGTGAAGCAATCAATCTG
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
1139654 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCAT-
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATC-TG
* * * * *
1139690 AAGTCTTCACCAGAGAGTAGTGAAGCAAAGCATCTT
1 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
*
1139726 AAGTCTTCACC
1 AAGCCTTCACC
1139737 AAAAGTAGTG
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
35 1 0.01
36 106 0.98
37 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (36 bp):
AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTG
Found at i:1139737 original size:36 final size:36
Alignment explanation
Indices: 1139582--1139769 Score: 202
Period size: 36 Copynumber: 5.2 Consensus size: 36
1139572 AGTCAATCCT
**
1139582 AAGCCTTCACTGGAGAATAGTGAAGCAAACCATCTG
1 AAGCCTTCACCAGAGAATAGTGAAGCAAACCATCTG
* * *
1139618 AAGCCTTCACCGGAGAATAGTGAAGCAATCAATCTG
1 AAGCCTTCACCAGAGAATAGTGAAGCAAACCATCTG
*
1139654 AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCAT-
1 AAGCCTTCACCAGAGAATAGTGAAGCAAACCATC-TG
* * * *
1139690 AAGTCTTCACCAGAGAGTAGTGAAGCAAAGCATCTT
1 AAGCCTTCACCAGAGAATAGTGAAGCAAACCATCTG
* * * *
1139726 AAGTCTTCACCA-A-AAGTAGTGAAGCAGATCCATTTT
1 AAGCCTTCACCAGAGAA-TAGTGAAGCA-AACCATCTG
1139762 AAGCCTTC
1 AAGCCTTC
1139770 TCAGAAGAGT
Statistics
Matches: 134, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
34 1 0.01
35 12 0.09
36 120 0.90
37 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.21
Consensus pattern (36 bp):
AAGCCTTCACCAGAGAATAGTGAAGCAAACCATCTG
Found at i:1140216 original size:51 final size:51
Alignment explanation
Indices: 1140151--1141190 Score: 938
Period size: 51 Copynumber: 19.7 Consensus size: 51
1140141 AAGATTATTT
*
1140151 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* * * *
1140202 GAGTTCCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTGTGAAGATATGC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* * * * *
1140253 GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAATATGTTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* * *
1140304 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGA-GATGTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATG-T-TC
* *
1140356 TGAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTC
1 -GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* * * *
1140408 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCATTTGAAGA-GATGTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATG-T-TC
* * *
1140460 TGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGTGAAGATATCC
1 -GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* *
1140512 GAGTTCCATACTCCTTA-ATGAAAGAAGGAGCGAACCCGTTTGAAGATGTTC
1 GAGTTCCATACTCCCTAGA-GAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* ** * * ** * *
1140563 GAGTTCTATACTCTTTAAAGAGAGAAGGG-GCGAACCCGTAAGAAGAAGATTTTT
1 GAGTTCCATACTCCCTAGAGAAAG-AGGGAGCGAACCCGT---TTGAAGATGTTC
*
1140617 GAGTTCTATACTCCCT-GAAGAAAGAGGGAGCGAACCCAG-TTGAAGATGTTC
1 GAGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCC-GTTTGAAGATGTTC
* * *
1140668 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG-A-AGATGTTC
* * * *
1140721 GAG-TCCTATACTCCCTAGAGAAAGGGGGAGAGAACACGTTTGAAGAATATGTCC
1 GAGTTCC-ATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAG---ATGTTC
* * * *
1140775 GAGTTCTATACTCCCTAGAGAAAGAGAGAGCGAACTCGTTTGCAGAAGATATTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT---GAAGATGTTC
* * *
1140829 GAGTTCCATAATCCCTAGAGAAAGAGGGAACGAACCCGATTGTTGAAGTTTGTTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG--T-TTGAAG-ATGTTC
* * * * * *
1140884 GAG-TCTTATACTCTCT-GAAAGAATAGGGAGC-AGACACGATTGTTGAAGATTATTC
1 GAGTTC-CATACTCCCTAGAGA-AAGAGGGAGCGA-ACCCG--T-TTGAAGA-TGTTC
* * * * *
1140939 GAG-TCTCATACTCTCT-GAAAGAATAGGGAG-TAGACACGATTGTTGAAGATTGTTC
1 GAGTTC-CATACTCCCTAGAGA-AAGAGGGAGCGA-ACCCG--T-TTGAAGA-TGTTC
* * *
1140994 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGA-GATGTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATG-T-TC
*
1141046 TGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAAATTGTTC
1 -GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGA-TGTTC
* * * *
1141099 GAGTTCTATACTCCCTAGAGAAAGAGAGAGCGAACTCGTTTGCAGAAGATATTC
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTT---GAAGATGTTC
* *
1141153 GAGTTCCATAATCCCTAGAGAAAGAGGGAACGAACCCG
1 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG
1141191 ATTGTTGAAG
Statistics
Matches: 838, Mismatches: 102, Indels: 95
0.81 0.10 0.09
Matches are distributed among these distances:
50 5 0.01
51 300 0.36
52 63 0.08
53 177 0.21
54 159 0.19
55 122 0.15
56 6 0.01
57 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (51 bp):
GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
Found at i:1140400 original size:104 final size:104
Alignment explanation
Indices: 1140151--1141190 Score: 949
Period size: 104 Copynumber: 9.9 Consensus size: 104
1140141 AAGATTATTT
* * *
1140151 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGATGTCCGAGTTCCATACTCC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCC
* * * *
1140216 CTAGAGAAAGAAGGAGCGAACCCGTGTGAAGATATG--C
66 CTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTC
* * *
1140253 GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAATATGTTCGAGTTCCATACTCC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCC
* *
1140318 TTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATG-TC
66 CTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTC
1140356 TGAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTC
1 -GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTC
* * *
1140421 CTTAAAGAAAGAAGGAGCGAACCCATTTGAAGAGATG-TC
65 CCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTC
* * * * *
1140460 TGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGTGAAGATATCCGAGTTCCATACTC
1 -GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTC
* * *
1140525 CTTAATGAAAGAAGGAGCGAACCCGTTTG-A-AGATGTTC
65 CCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTC
* ** * * ** * * *
1140563 GAGTTCTATACTCTTTAAAGAGAGAAGGGGCGAACCCGTAAGAAGAAGATTTTTGAGTTCTATAC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGT---TTGAAGATGTTCGAGTTCCATAC
*
1140628 TCCCTGAAGAAAGAGGGAGCGAACCCAG-TTG-A-AGATGTTC
63 TCCCTAAAGAAAGAGGGAGCGAACCC-GTTTGAAGAGATGTTC
*
1140668 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAG-TCCTATAC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTG-A-AGATGTTCGAGTTCC-ATAC
* * * * * *
1140732 TCCCTAGAGAAAGGGGGAGAGAACACGTTTGAAGAATATGTCC
63 TCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAG-AGATGTTC
* * * *
1140775 GAGTTCTATACTCCCTAGAGAAAG-AGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATA
1 GAGTTCCATACTCCCTAAAGAAAGAAG-GAGCGAACCCGTTT---GAAGATGTTCGAGTTCCATA
* * * **
1140839 ATCCCTAGAGAAAGAGGGAACGAACCCGATTGTTGAAG-TTTGTTC
62 CTCCCTAAAGAAAGAGGGAGCGAACCCG--T-TTGAAGAGATGTTC
* * * *
1140884 GAG-TCTTATACTCTCTGAAAGAATAG--GGAGC-AGACACGATTGTTGAAGATTATTCGAG-TC
1 GAGTTC-CATACTCCCT-AAAGAA-AGAAGGAGCGA-ACCCG--T-TTGAAGA-TGTTCGAGTTC
* * * * *
1140944 TCATACTCTCTGAAAG-AATAGGGAG-TAGACACGATTGTTGAAGA-TTGTTC
58 -CATACTCCCT-AAAGAAAGAGGGAGCGA-ACCCG--T-TTGAAGAGATGTTC
*
1140994 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGA-GATGTCTGAGTTCCATAC
1 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATG-T-TC-GAGTTCCATAC
*
1141058 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA-A-ATTGTTC
63 TCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGA-TGTTC
* * * *
1141099 GAGTTCTATACTCCCTAGAGAAAG-AGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATA
1 GAGTTCCATACTCCCTAAAGAAAGAAG-GAGCGAACCCGTTT---GAAGATGTTCGAGTTCCATA
* * *
1141163 ATCCCTAGAGAAAGAGGGAACGAACCCG
62 CTCCCTAAAGAAAGAGGGAGCGAACCCG
1141191 ATTGTTGAAG
Statistics
Matches: 794, Mismatches: 94, Indels: 96
0.81 0.10 0.10
Matches are distributed among these distances:
102 129 0.16
103 8 0.01
104 226 0.28
105 131 0.16
106 41 0.05
107 54 0.07
108 72 0.09
109 46 0.06
110 70 0.09
111 15 0.02
112 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (104 bp):
GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCC
CTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTC
Found at i:1140431 original size:155 final size:154
Alignment explanation
Indices: 1140151--1141190 Score: 959
Period size: 155 Copynumber: 6.6 Consensus size: 154
1140141 AAGATTATTT
* *
1140151 GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGA-AGATGTCCGAGTTCCATACTC
1 GAGTTCCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTTTGAGAGATGTTCGAGTTCCATACTC
* * * * *
1140215 CCTAGAGAAAGAAGGAGCGAACCCGTGTGAAGATATGCGAGTTCTATACTCCTTAAAGAAAGAAG
66 CCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAG
*
1140280 GAGCGAACCCGTTTGAATATGTTC
131 GAGCGAACCCGTTTGAAGATGTTC
* *
1140304 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATG-TCTGAGTTCCATAC
1 GAGTTCCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTTTG-AGAGATGTTC-GAGTTCCATAC
1140368 TCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGA
64 TCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGA
*
1140433 AGGAGCGAACCCATTTGAAGA-GATGTC
129 AGGAGCGAACCCGTTTGAAGATG-T-TC
* * * *
1140460 TGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTGTGA-AGATATCCGAGTTCCATACT
1 -GAGTTCCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTTTGAGAGATGTTCGAGTTCCATACT
* * * * *
1140524 CCTTAATGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCTATACTCTTTAAAGAGAGAA
65 CCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAA
* ** * *
1140589 GGGGCGAACCCGTAAGAAGAAGATTTTT
130 GGAGCGAACCCGT---TTGAAGATGTTC
* *
1140617 GAGTTCTATACTCCCT-GAAGAAAGAGGGAGCGAACCCAG-TTGA-AGATGTTCGAGTTCCATAC
1 GAGTTCCATACTCCCTAG-AGAAAGAAGGAGCGAACCC-GTTTGAGAGATGTTCGAGTTCCATAC
* * *
1140679 TCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAG-TCCTATACTCCCTAGAGAA
64 TCCCTAAAGAAAGAAGGAGCGAACCCGTTTG-A-AGATGTTCGAGTTCC-ATACTCCTTAAAGAA
** * * *
1140743 AGGGGGAGAGAACACGTTTGAAGAATATGTCC
126 AGAAGGAGCGAACCCGTTTGAAG---ATGTTC
* * *
1140775 GAGTTCTATACTCCCTAGAGAAAG-AGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATA
1 GAGTTCCATACTCCCTAGAGAAAGAAG-GAGCGAACCCGTTTG-AG-AGATGTTCGAGTTCCATA
* * * * * * *
1140839 ATCCCTAGAGAAAGAGGGAACGAACCCGATTGTTGAAGTTTGTTCGAG-TCTTATACTCTCTGAA
63 CTCCCTAAAGAAAGAAGGAGCGAACCCG--T-TTGAAG-ATGTTCGAGTTC-CATACTC-CTTAA
* *
1140903 AGAATAG--GGAGC-AGACACGATTGTTGAAGATTATTC
122 AGAA-AGAAGGAGCGA-ACCCG--T-TTGAAGA-TGTTC
* * * *
1140939 GAG-TCTCATACTCTCTGAAAGAATAG--GGAG-TAGACACGATTGTTGA-AGATTGTTCGAGTT
1 GAGTTC-CATACTCCCT-AGAGAA-AGAAGGAGCGA-ACCCG--T-TTGAGAGA-TGTTCGAGTT
* *
1140999 CCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGA-GATGTCTGAGTTCCATACTCCCT
58 CCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATG-T-TC-GAGTTCCATACTCCTT
* * *
1141063 AGAGAAAGAGGGAGCGAACCCGTTTGAAAATTGTTC
120 AAAGAAAGAAGGAGCGAACCCGTTTGAAGA-TGTTC
* * *
1141099 GAGTTCTATACTCCCTAGAGAAAG-AGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATA
1 GAGTTCCATACTCCCTAGAGAAAGAAG-GAGCGAACCCGTTTG-AG-AGATGTTCGAGTTCCATA
* * * *
1141163 ATCCCTAGAGAAAGAGGGAACGAACCCG
63 CTCCCTAAAGAAAGAAGGAGCGAACCCG
1141191 ATTGTTGAAG
Statistics
Matches: 734, Mismatches: 94, Indels: 112
0.78 0.10 0.12
Matches are distributed among these distances:
153 39 0.05
154 3 0.00
155 188 0.26
156 88 0.12
157 48 0.07
158 81 0.11
159 45 0.06
160 33 0.04
161 47 0.06
162 17 0.02
163 50 0.07
164 36 0.05
165 46 0.06
166 10 0.01
167 3 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (154 bp):
GAGTTCCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTTTGAGAGATGTTCGAGTTCCATACTC
CCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAG
GAGCGAACCCGTTTGAAGATGTTC
Found at i:1140650 original size:54 final size:53
Alignment explanation
Indices: 1140139--1141464 Score: 791
Period size: 51 Copynumber: 24.9 Consensus size: 53
1140129 GTGAAGCAAA
* *
1140139 TGAAGATTATTTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG--T-T
1 TGAAGATT-TTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * *
1140191 TGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAAGGAGCGAACCCG--TG-
1 TGAAGATTTTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * *
1140242 TGAAGATATGCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCG--T-T
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * * * * *
1140293 TGAATATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * * *
1140347 AG-AGA-TGTCTGAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCG--T-T
1 TGAAGATTTTC-GAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * * * * *
1140397 TGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCATTTGA
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * *
1140451 AG-AGA-TGTCTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG--TG-
1 TGAAGATTTTC-GAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * * *
1140501 TGAAGATATCCGAGTTCCATACTCCTTAATGAAAGAAGGAGCGAACCCG--T-T
1 TGAAGATTTTCGAGTTCTATACTCCCTAA-GAAAGAGGGAGCGAACCCGTTTGT
* ** * ** *
1140552 TGAAGATGTTCGAGTTCTATACTCTTTAAAGAGAGAAGGG-GCGAACCCGTAAGA
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAG-AGGGAGCGAACCCGTTTGT
* * *
1140606 AGAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCC---AGT
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * * * *
1140657 TGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * * * * * *
1140711 AG-AGATGTTCGAGTCCTATACTCCCTAGAGAAAGGGGGAGAGAACACGTTTGA
1 TGAAGATTTTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * * * * *
1140764 AGAATATGTCCGAGTTCTATACTCCCTAGAGAAAGAGAGAGCGAACTCGTTTGC
1 TGAAGATTTTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * * * *
1140818 AGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACGAACCCGATTGT
1 TGAAGATTTTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * * *
1140872 TGAAGTTTGTTCGAG-TCTTATACTCTCTGAA-AGAATAGGGAGC-AGACACGATTGT
1 TGAAGATT-TTCGAGTTC-TATACTCCCT-AAGA-AAGAGGGAGCGA-ACCCGTTTGT
* * * * *
1140927 TGAAGATTATTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAG-TAGACACGATTGT
1 TGAAGATT-TTCGAGTTCT-ATACTCCCT-AAGA-AAGAGGGAGCGA-ACCCGTTTGT
* * * *
1140982 TGAAGATTGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA
1 TGAAGATT-TTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* * *
1141037 AG-AGA-TGTCTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG--T-T
1 TGAAGATTTTC-GAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * *
1141087 TGAAAATTGTTCGAGTTCTATACTCCCTAGAGAAAGAGAGAGCGAACTCGTTTGC
1 TGAAGATT-TTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * * * *
1141142 AGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACGAACCCGATTGT
1 TGAAGATTTTCGAGTTCTATACTCCCTA-AGAAAGAGGGAGCGAACCCGTTTGT
* * * * *
1141196 TGAAGTTTGTTCGAG-TCTTATACTCTCTGAA-AGAATAGGGAGC-AGACACGATTGT
1 TGAAGATT-TTCGAGTTC-TATACTCCCT-AAGA-AAGAGGGAGCGA-ACCCGTTTGT
* * * * *
1141251 TGAAGATTATTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAG-TAGACACGATTGT
1 TGAAGATT-TTCGAGTTCT-ATACTCCCT-AAGA-AAGAGGGAGCGA-ACCCGTTTGT
* * * * * **
1141306 TGAAGATTGGTCGAG-TCTCATACTCTCTGAAGGAATAGGGAGC-ATACACGTTTCC
1 TGAAGATT-TTCGAGTTCT-ATACTCCCT-AAGAAAGAGGGAGCGA-ACCCGTTTGT
** * * *
1141361 AAAAGATTTTCGAGTTCTATGCTCCCTGAAGAAAGTGGGAGCGAACCCGTTTGC
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGTTTGT
* *
1141415 AGAAGATTTTCAAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGT
1 TGAAGATTTTCGAGTTCTATACTCCCT-AAGAAAGAGGGAGCGAACCCGT
1141465 AGACAAAAGA
Statistics
Matches: 1052, Mismatches: 164, Indels: 114
0.79 0.12 0.09
Matches are distributed among these distances:
50 4 0.00
51 290 0.28
52 61 0.06
53 162 0.15
54 268 0.25
55 261 0.25
56 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (53 bp):
TGAAGATTTTCGAGTTCTATACTCCCTAAGAAAGAGGGAGCGAACCCGTTTGT
Found at i:1140912 original size:55 final size:55
Alignment explanation
Indices: 1140853--1141348 Score: 397
Period size: 55 Copynumber: 9.1 Consensus size: 55
1140843 CTAGAGAAAG
* * * *
1140853 AGGGAACGAACCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAAT
1 AGGGAGCGAACACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAAGAAT
*
1140908 AGGGAGC-AGACACGATTGTTGAAGATTATTCGAGTCTCATACTCTCTGAAAGAAT
1 AGGGAGCGA-ACACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAAGAAT
* *
1140963 AGGGAG-TAGACACGATTGTTGAAGATTGTTCGAGT-TCCATACTC-CTTAAAGAA-
1 AGGGAGCGA-ACACGATTGTTGAAGATTGTTCGAGTCT-CATACTCTCTGAAAGAAT
* * * * *
1141016 AGAAGGAGCGAACCCG--T-TTGAAGAGATG-TCTGAGT-TCCATACTCCCT-AGAGAAAG
1 AG--GGAGCGAACACGATTGTTGAAGA-TTGTTC-GAGTCT-CATACTCTCTGAAAG-AAT
* * * *
1141071 AGGGAGCGAACCCG--T-TTGAAAATTGTTCGAGT-TCTATACTCCCT-AGAGAA-
1 AGGGAGCGAACACGATTGTTGAAGATTGTTCGAGTCTC-ATACTCTCTGAAAGAAT
* * ** * * * * *
1141121 AGAGAGAGCGAACTCGTTTGCAGAAGA-TATTCGAGT-TCCATAATCCCT-AGAGAAAG
1 AG-G-GAGCGAACACGATTGTTGAAGATTGTTCGAGTCT-CATACTCTCTGAAAG-AAT
* * * *
1141177 AGGGAACGAACCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAAT
1 AGGGAGCGAACACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAAGAAT
*
1141232 AGGGAGC-AGACACGATTGTTGAAGATTATTCGAGTCTCATACTCTCTGAAAGAAT
1 AGGGAGCGA-ACACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAAGAAT
* * *
1141287 AGGGAG-TAGACACGATTGTTGAAGATTGGTCGAGTCTCATACTCTCTGAAGGAAT
1 AGGGAGCGA-ACACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAAGAAT
1141342 AGGGAGC
1 AGGGAGC
1141349 ATACACGTTT
Statistics
Matches: 375, Mismatches: 39, Indels: 53
0.80 0.08 0.11
Matches are distributed among these distances:
50 2 0.01
51 4 0.01
52 39 0.10
53 42 0.11
54 53 0.14
55 228 0.61
56 7 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (55 bp):
AGGGAGCGAACACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAAGAAT
Found at i:1141254 original size:324 final size:326
Alignment explanation
Indices: 1140357--1141460 Score: 1373
Period size: 324 Copynumber: 3.4 Consensus size: 326
1140347 AGAGATGTCT
*
1140357 GAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTG-A-AGATGTTCGAGTTCCATACT
1 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCCATACT
* * * * *
1140420 CCTTAAAGAAAGAAGGAGCGAACCCATTTGAAGAGA-TG-TCTGAGTTCCATACTCCCTAGAGAA
66 CCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGATTGTTC-GAGTTCTATACTCCCTAGAGAA
* * * * * * * *
1140483 AGAGGGAGCGAACCCG--TG-TGAAGATATCCGAGTTCCATACTCCTTA-ATGAAAGAAGGAGCG
130 AGAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGA-GAAAGAGGGAACG
* * * *
1140544 AACCCG--T-TTGAAG-ATGTTCGAGT-TCTATACTCT-TTAAAGAGAGAAGGG-GC-GAACCCG
194 AACCCGATTGTTGAAGTTTGTTCGAGTCT-TATACTCTCTGAAAGA-A-TAGGGAGCAG-ACACG
* ** * * * * *
1140601 -TAAGAAGAAGATT-TTTGAGT-TCTATACTCCCTG-AAGAAAGAGGGAG-CGA-ACCCA--GTT
255 AT-TGTTGAAGATTATTCGAGTCTC-ATACTCTCTGAAAG-AATAGGGAGTAGACA-CGATTGTT
1140658 GAAGA-TGTTC
316 GAAGATTGTTC
1140668 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAG-TCCTATAC
1 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCC-ATAC
* * * *
1140732 TCCCTAGAGAAAGGGGGAGAGAACACGTTTGAAGA-ATATGTCCGAGTTCTATACTCCCTAGAGA
65 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGAT-TGTTCGAGTTCTATACTCCCTAGAGA
1140796 AAGAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACG
129 AAGAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACG
1140861 AACCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTG
194 AACCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTG
1140926 TTGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAGATTG
259 TTGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAGATTG
1140991 TTC
324 TTC
1140994 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATG-TCTGAGTTCCATAC
1 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTC-GAGTTCCATAC
1141058 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA-A-ATTGTTCGAGTTCTATACTCCCTAGAGAA
65 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGATTGTTCGAGTTCTATACTCCCTAGAGAA
1141121 AGAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACGA
130 AGAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACGA
1141186 ACCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGT
195 ACCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGT
*
1141251 TGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAGATTGG
260 TGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAGATTGT
1141316 TC
325 TC
* * * * * * *
1141318 GAG-TCTCATACTCTCTGAAGGAATAG--GGAGC-ATACACGTTTCCAAAAGATTTTCGAGTTCT
1 GAGTTC-CATACTC-CTTAAAGAA-AGAAGGAGCGA-ACCCGTTT-GAAGAGATGTTCGAGTTCC
* * * *
1141379 ATGCTCCCT-GAAGAAAGTGGGAGCGAACCCGTTTGCAGAAGATT-TTCAAGTTCTATACTCCCT
61 ATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGAAG-AGATTGTTCGAGTTCTATACTCCCT
*
1141442 -GAAGAAAGAGGGAGCGAAC
124 AG-AGAAAGAGAGAGCGAAC
1141461 CCGTAGACAA
Statistics
Matches: 706, Mismatches: 47, Indels: 64
0.86 0.06 0.08
Matches are distributed among these distances:
311 41 0.06
312 5 0.01
313 43 0.06
314 37 0.05
315 1 0.00
316 2 0.00
317 41 0.06
318 1 0.00
319 1 0.00
320 10 0.01
321 32 0.05
322 32 0.05
323 12 0.02
324 246 0.35
325 64 0.09
326 97 0.14
327 38 0.05
328 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (326 bp):
GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCCATACT
CCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGATTGTTCGAGTTCTATACTCCCTAGAGAAA
GAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACGAA
CCCGATTGTTGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTT
GAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAGATTGTT
C
Found at i:1141367 original size:55 final size:53
Alignment explanation
Indices: 1140606--1141509 Score: 302
Period size: 55 Copynumber: 16.8 Consensus size: 53
1140596 ACCCGTAAGA
* * * *
1140606 AGAAGATTTTTGAGT-TCTATACTCCCTGAAGAAAGAGGGAGCGAACCCAG-TT--
1 AGAAGATTTTCGAGTCTC-ATACTCCCTGAAGGAATAGGGAGC-AACAC-GTTTGC
* * * * * * * *
1140658 -GAAGATGTTCGAGT-TCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA
1 AGAAGATTTTCGAGTCT-CATACTCCCTGAAGGAATAGGGAGC-AACACGTTTGC
* * ** * *
1140711 AG-AGATGTTCGAGTC-CTATACTCCCT-AGAGAAAGGGGGAGAGAACACGTTTGA
1 AGAAGATTTTCGAGTCTC-ATACTCCCTGA-AGGAATAGGGAG-CAACACGTTTGC
* * * * * * *
1140764 AGAATATGTCCGAGT-TCTATACTCCCT-AGAGAAAGAGAGAGCGAACTCGTTTGC
1 AGAAGATTTTCGAGTCTC-ATACTCCCTGA-AGGAATAGGGAGC-AACACGTTTGC
* * * * * * * *
1140818 AGAAGATATTCGAGT-TCCATAATCCCT-AGAGAAAGAGGGAACGAACCCGATTGT
1 AGAAGATTTTCGAGTCT-CATACTCCCTGA-AGGAATAGGGAGC-AACACGTTTGC
* * * * * * *
1140872 TGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGT
1 AGAAGATT-TTCGAGTCTCATACTCCCTGAAGGAATAGGGAGCA-ACACGTTTGC
* * * * * *
1140927 TGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGT
1 AGAAGATT-TTCGAGTCTCATACTCCCTGAAGGAATAGGGAGCA-ACACGTTTGC
* * * * * * * *
1140982 TGAAGATTGTTCGAGT-TCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA
1 AGAAGATT-TTCGAGTCT-CATACTCCCTGAAGGAATAGGGAGC-AACACGTTTGC
* * * *
1141037 AG-AGA-TGTCTGAGT-TCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG-
1 AGAAGATTTTC-GAGTCT-CATACTCCCTGA-AGGAATAGGGAGC-AACACGTTTGC
* * * *
1141089 A-AA-ATTGTTCGAGT-TCTATACTCCCT-AGAGAAAGAGAGAGCGAACTCGTTTGC
1 AGAAGATT-TTCGAGTCTC-ATACTCCCTGA-AGGAATAGGGAGC-AACACGTTTGC
* * * * * * * *
1141142 AGAAGATATTCGAGT-TCCATAATCCCT-AGAGAAAGAGGGAACGAACCCGATTGT
1 AGAAGATTTTCGAGTCT-CATACTCCCTGA-AGGAATAGGGAGC-AACACGTTTGC
* * * * * * *
1141196 TGAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGT
1 AGAAGATT-TTCGAGTCTCATACTCCCTGAAGGAATAGGGAGCA-ACACGTTTGC
* * * * * *
1141251 TGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGT
1 AGAAGATT-TTCGAGTCTCATACTCCCTGAAGGAATAGGGAGCA-ACACGTTTGC
* * * *
1141306 TGAAGATTGGTCGAGTCTCATACTCTCTGAAGGAATAGGGAGCATACACGTTTCC
1 AGAAGATT-TTCGAGTCTCATACTCCCTGAAGGAATAGGGAGCA-ACACGTTTGC
* * * *
1141361 AAAAGATTTTCGAGT-TCTATGCTCCCTGAAGAAAGT-GGGAGCGAACCCGTTTGC
1 AGAAGATTTTCGAGTCTC-ATACTCCCTGAAGGAA-TAGGGAGC-AACACGTTTGC
* * * * *
1141415 AGAAGATTTTCAAGT-TCTATACTCCCTGAAGAAAGAGGGAGCGAACCCG-TAGAC
1 AGAAGATTTTCGAGTCTC-ATACTCCCTGAAGGAATAGGGAGC-AACACGTTTG-C
* * *
1141469 AAAAGATTGTACGAGTTTC-TACTCCCTGAAGGAATAGGGAG
1 AGAAGATT-TTCGAGTCTCATACTCCCTGAAGGAATAGGGAG
1141510 TGAACATGTT
Statistics
Matches: 704, Mismatches: 108, Indels: 78
0.79 0.12 0.09
Matches are distributed among these distances:
50 1 0.00
51 44 0.06
52 47 0.07
53 88 0.12
54 247 0.35
55 270 0.38
56 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (53 bp):
AGAAGATTTTCGAGTCTCATACTCCCTGAAGGAATAGGGAGCAACACGTTTGC
Found at i:1141367 original size:110 final size:109
Alignment explanation
Indices: 1140606--1141393 Score: 467
Period size: 110 Copynumber: 7.3 Consensus size: 109
1140596 ACCCGTAAGA
* * * * * *
1140606 AGAAGATT-TTTGAGTTCTATACTCCCTGAAGAAAGAGGGAG-CGAAC-CCA--GTTGAAGA-TG
1 AGAAGATTATTCGAGTTCCATACTCCCTAAAG-AATAGGGAGTAGAACACGATTGTTGAAGATTG
* * *
1140665 TTCGAGT-TCCATACTC-CTTAAAGAA-AGAAGGAGCGAACCCGTTTGA
65 TTCGAGTCT-CATACTCTCTGAAAGAATAG--GGAGC-AACACGTTTGC
* *
1140711 AG-AGA-TGTTCGAG-TCCTATACTCCCTAGAGAA-AGGGGGAG-AGAACACG--T-TTGAAGAA
1 AGAAGATTATTCGAGTTCC-ATACTCCCTAAAGAATA--GGGAGTAGAACACGATTGTTGAAG-A
* * * *
1140768 TATGTCCGAGT-TCTATACTCCCT-AGAGAA-AGAGAGAGCGAACTCGTTTGC
62 T-TGTTCGAGTCTC-ATACTCTCTGAAAGAATAG-G-GAGC-AACACGTTTGC
* * * * *
1140818 AGAAGA-TATTCGAGTTCCATAATCCCTAGAGAA-AGAGG-GAACGAACCCGATTGTTGAAGTTT
1 AGAAGATTATTCGAGTTCCATACTCCCTAAAGAATAG-GGAGTA-GAACACGATTGTTGAAGATT
* * *
1140880 GTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGT
64 GTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCA-ACACGTTTGC
* *
1140927 TGAAGATTATTCGAG-TCTCATACTCTCTGAAAGAATAGGGAGTAG-ACACGATTGTTGAAGATT
1 AGAAGATTATTCGAGTTC-CATACTCCCT-AAAGAATAGGGAGTAGAACACGATTGTTGAAGATT
* * *
1140990 GTTCGAGT-TCCATACTC-CTTAAAGAA-AGAAGGAGCGAACCCGTTTGA
64 GTTCGAGTCT-CATACTCTCTGAAAGAATAG--GGAGC-AACACGTTTGC
* * * * * *
1141037 AG-AGA-T-GTCTGAGTTCCATACTCCCTAGAGAAAGAGGGAG-CGAACCCG--T-TTGAAAATT
1 AGAAGATTATTC-GAGTTCCATACTCCCTAAAG-AATAGGGAGTAGAACACGATTGTTGAAGATT
* * *
1141095 GTTCGAGT-TCTATACTCCCT-AGAGAA-AGAGAGAGCGAACTCGTTTGC
64 GTTCGAGTCTC-ATACTCTCTGAAAGAATAG-G-GAGC-AACACGTTTGC
* * * * *
1141142 AGAAGA-TATTCGAGTTCCATAATCCCTAGAGAA-AGAGG-GAACGAACCCGATTGTTGAAGTTT
1 AGAAGATTATTCGAGTTCCATACTCCCTAAAGAATAG-GGAGTA-GAACACGATTGTTGAAGATT
* * *
1141204 GTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGT
64 GTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCA-ACACGTTTGC
* *
1141251 TGAAGATTATTCGAG-TCTCATACTCTCTGAAAGAATAGGGAGTAG-ACACGATTGTTGAAGATT
1 AGAAGATTATTCGAGTTC-CATACTCCCT-AAAGAATAGGGAGTAGAACACGATTGTTGAAGATT
* * *
1141314 GGTCGAGTCTCATACTCTCTGAAGGAATAGGGAGCATACACGTTTCC
64 GTTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCA-ACACGTTTGC
* * * *
1141361 AAAAGATT-TTCGAGTTCTATGCTCCCTGAAGAA
1 AGAAGATTATTCGAGTTCCATACTCCCTAAAGAA
1141394 AGTGGGAGCG
Statistics
Matches: 550, Mismatches: 75, Indels: 113
0.75 0.10 0.15
Matches are distributed among these distances:
102 1 0.00
103 5 0.01
104 40 0.07
105 54 0.10
106 38 0.07
107 49 0.09
108 68 0.12
109 105 0.19
110 155 0.28
111 27 0.05
112 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (109 bp):
AGAAGATTATTCGAGTTCCATACTCCCTAAAGAATAGGGAGTAGAACACGATTGTTGAAGATTGT
TCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAACACGTTTGC
Found at i:1141439 original size:379 final size:378
Alignment explanation
Indices: 1140252--1141464 Score: 1122
Period size: 379 Copynumber: 3.2 Consensus size: 378
1140242 TGAAGATATG
* * * * *
1140252 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTT--GAATATGTTCGAGTTCCATAC
1 CGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAGAAGATTTTCGAGTTCCATAC
* * * *
1140315 TCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATG-TCTGAGTTCC-ATACTCCCTAAAGA
66 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTC-GAG-TCCTATACTCCCTAGAGA
* * * * * * *
1140378 AAGA-AGGAGCGAACCCGTTTGAAGATG-T-T-CGAGTTCCATACTCCTTAAAGAAAGA-AGGAG
129 AAGAGA-GAGAGAACACGTTTGAAGAAGATATCCGAGTTCCATAATCCCTAGAGAAAGAGA-GAA
* * * * * *
1140438 CGAACCC-ATTTGAAG-AGAT-GTCTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG-
192 CGAACCCGA-TTGCAGAAGATATTC-GAGTTCCATAATCCCTAAAGAAAGAGGGAACGAACACGA
* * * *
1140499 -TG-TGAAGA-TATCCGAGT-TCCATACTC-CTTAATGAA-AGAAGGAGC-GAACCCG--T-TTG
255 TTGTTGAAGATTATTCGAGTCT-CATACTCTCTGAAAGAATAG--GGAGCAG-ACACGATTGTTG
* * * ***
1140554 AAGA-T-GTTCGAGT-TCTATACTCT-TTAAAGAGAGAAGGG-GC-GAACCCG-TAAGAAGAAGA
316 AAGATTAG-TCGAGTCTC-ATACTCTCTGAAAGA-A-TAGGGAGCAG-ACACGATTCCAA-AAGA
1140612 TTTT
375 TTTT
* *
1140616 TGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCAG-TT--GAAGATGTTCGAGTTCCATA
1 CGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCC-GTTTGAGAAGATTTTCGAGTTCCATA
* * *
1140678 CTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTCGAGTCCTATACTCCCTAGAGAA
65 CTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTCGAGTCCTATACTCCCTAGAGAA
* * * * * * *
1140743 AGGGGGAGAGAACACGTTTGAAGAATATGTCCGAGTTCTATACTCCCTAGAGAAAGAGAGAGCGA
130 AGAGAGAGAGAACACGTTTGAAGAAGATATCCGAGTTCCATAATCCCTAGAGAAAGAGAGAACGA
* * * *
1140808 ACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAACGAACCCGATTGTT
195 ACCCGATTGCAGAAGATATTCGAGTTCCATAATCCCTAAAGAAAGAGGGAACGAACACGATTGTT
* * * *
1140873 GAAGTTTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTTGAAGATTATT
260 GAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTTGAAGATTAGT
* ****
1140938 CGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAGATTGTT
325 CGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTCCAAAAGATT-TT
* * * * *
1140993 CGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGA-AGAGA-TGTCTGAGTTCCAT
1 CGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAGA-AGATTTTC-GAGTTCCAT
*
1141056 ACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA-A-ATTGTTCGAGTTCTATACTCCCTAGAG
64 ACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGA-TGTTCGAGTCCTATACTCCCTAGAG
* * * * *
1141119 AAAGAGAGAGCGAACTCGTTTGCAGAAGATATTCGAGTTCCATAATCCCTAGAGAAAGAGGGAAC
128 AAAGAGAGAGAGAACACGTTTGAAGAAGATATCCGAGTTCCATAATCCCTAGAGAAAGAGAGAAC
** * * * * * * *
1141184 GAACCCGATTGTTGAAGTTTGTTCGAG-TCTTATACTCTCTGAAAG-AATAGGGAGC-AGACACG
193 GAACCCGATTGCAGAAG-ATATTCGAGTTC-CATAATCCCT-AAAGAAAGAGGGAACGA-ACACG
*
1141246 ATTGTTGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGTAGACACGATTGTTGAAG
254 ATTGTTGAAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTTGAAG
* * * *
1141311 ATTGGTCGAGTCTCATACTCTCTGAAGGAATAGGGAGCATACACGTTTCCAAAAGATTTT
319 ATTAGTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTCCAAAAGATTTT
* * * *
1141371 CGAGTTCTATGCTCCCTGAAGAAAGTGGGAGCGAACCCGTTTGCAGAAGATTTTCAAGTTCTATA
1 CGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTG-AGAAGATTTTCGAGTTCCATA
1141436 CTCCCT-GAAGAAAGAGGGAGCGAACCCGT
65 CTCCCTAG-AGAAAGAGGGAGCGAACCCGT
1141465 AGACAAAAGA
Statistics
Matches: 708, Mismatches: 97, Indels: 73
0.81 0.11 0.08
Matches are distributed among these distances:
363 3 0.00
364 131 0.19
365 4 0.01
366 1 0.00
367 37 0.05
368 41 0.06
369 2 0.00
370 2 0.00
371 5 0.01
372 22 0.03
373 9 0.01
374 3 0.00
375 11 0.02
376 27 0.04
377 48 0.07
378 137 0.19
379 218 0.31
380 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (378 bp):
CGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAGAAGATTTTCGAGTTCCATAC
TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTCGAGTCCTATACTCCCTAGAGAAA
GAGAGAGAGAACACGTTTGAAGAAGATATCCGAGTTCCATAATCCCTAGAGAAAGAGAGAACGAA
CCCGATTGCAGAAGATATTCGAGTTCCATAATCCCTAAAGAAAGAGGGAACGAACACGATTGTTG
AAGATTATTCGAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTTGAAGATTAGTC
GAGTCTCATACTCTCTGAAAGAATAGGGAGCAGACACGATTCCAAAAGATTTT
Found at i:1141475 original size:54 final size:54
Alignment explanation
Indices: 1140141--1141514 Score: 555
Period size: 54 Copynumber: 25.8 Consensus size: 54
1140131 GAAGCAAATG
* * *
1140141 AAGATTATTTGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG---
1 AAGATT-TTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTAGCAA
* * * *
1140193 AAGATGTCCGAGTTCCATACTCCCT-AGAGAAAGAAGGAGCGAACCCGTGT-G---
1 AAGATTTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGT-TAGCAA
* * * * * *
1140244 AAGATATGCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG---
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * * * *
1140295 AATATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG-AA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * * *
1140348 GAGA-TGTCTGAGTTCCATACTCCCTAAAGAAAGAAGGAGCGAACCCGTTTG---
1 AAGATTTTC-GAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * * * *
1140399 AAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCATTTG-AA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
* * *
1140452 GAGA-TGTCTGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTGT-G---
1 AAGATTTTC-GAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGT-TAGCAA
* * * * * *
1140503 AAGATATCCGAGTTCCATACT-CCTTAATGAAAGAAGGAGCGAACCCGTTTG---
1 AAGATTTTCGAGTTCTATACTCCCTGAA-GAAAGAGGGAGCGAACCCGTTAGCAA
* ** * * *
1140554 AAGATGTTCGAGTTCTATACTCTTTAAAGAGAGAAGGG-GCGAACCCGTAAG-AA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAG-AGGGAGCGAACCCGTTAGCAA
*
1140607 GAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCAGTT-G---
1 -AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCC-GTTAGCAA
* * * * * *
1140659 AAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG-AA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * * * *
1140712 GAGATGTTCGAGTCCTATACTCCCT-AGAGAAAGGGGGAGAGAACACGTTTG-AA
1 AAGATTTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * * * *
1140765 GAATATGTCCGAGTTCTATACTCCCT-AGAGAAAGAGAGAGCGAACTCGTTTGCAG
1 -AAGATTTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * ***
1140820 AAGATATTCGAGTTCCATAATCCCT-AGAGAAAGAGGGAACGAACCCGATT-GTTG
1 AAGATTTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCG-TTAGCAA
* * * * ***
1140874 AAGTTTGTTCGAG-TCTTATACTCTCTGAA-AGAATAGGGAGC-AGACACGATT-GTTG
1 AAGATT-TTCGAGTTC-TATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCG-TTAGCAA
* * * * ***
1140929 AAGATTATTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAG-TAGACACGATT-GTTG
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCG-TTAGCAA
* * * * *
1140984 AAGATTGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG-AA
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
* * * *
1141038 GAGA-TGTCTGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG--A
1 AAGATTTTC-GAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTAGCAA
* * * *
1141090 AA-ATTGTTCGAGTTCTATACTCCCT-AGAGAAAGAGAGAGCGAACTCGTTTGCAG
1 AAGATT-TTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCGTTAGCAA
* * * * ***
1141144 AAGATATTCGAGTTCCATAATCCCT-AGAGAAAGAGGGAACGAACCCGATT-GTTG
1 AAGATTTTCGAGTTCTATACTCCCTGA-AGAAAGAGGGAGCGAACCCG-TTAGCAA
* * * * ***
1141198 AAGTTTGTTCGAG-TCTTATACTCTCTGAA-AGAATAGGGAGC-AGACACGATT-GTTG
1 AAGATT-TTCGAGTTC-TATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCG-TTAGCAA
* * * * ***
1141253 AAGATTATTCGAG-TCTCATACTCTCTGAA-AGAATAGGGAG-TAGACACGATT-GTTG
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGA-AAGAGGGAGCGA-ACCCG-TTAGCAA
* * * * * **
1141308 AAGATTGGTCGAG-TCTCATACTCTCTGAAGGAATAGGGAGC-ATACACGTTTCCAA
1 AAGATT-TTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAGCGA-ACCCGTTAGCAA
* * * *
1141363 AAGATTTTCGAGTTCTATGCTCCCTGAAGAAAGTGGGAGCGAACCCGTTTGCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
*
1141417 AAGATTTTCAAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCG-TAGACAA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAG-CAA
* * * * *
1141471 AAGATTGTACGAGTT-TCTACTCCCTGAAGGAATAGGGAGTGAAC
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAAC
1141515 ATGTTTTCCA
Statistics
Matches: 1099, Mismatches: 160, Indels: 124
0.79 0.12 0.09
Matches are distributed among these distances:
50 9 0.01
51 284 0.26
52 67 0.06
53 171 0.16
54 296 0.27
55 266 0.24
56 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTAGCAA
Found at i:1141698 original size:14 final size:14
Alignment explanation
Indices: 1141679--1141705 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1141669 GCAAACCATT
1141679 AGATAAAAAAAAAG
1 AGATAAAAAAAAAG
1141693 AGATAAAAAAAAA
1 AGATAAAAAAAAA
1141706 AAAAAAGTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.07
Consensus pattern (14 bp):
AGATAAAAAAAAAG
Found at i:1146499 original size:183 final size:183
Alignment explanation
Indices: 1146191--1146546 Score: 563
Period size: 183 Copynumber: 1.9 Consensus size: 183
1146181 GCGGTAAAAA
* * * * *
1146191 TATGACAAAACCGATAAAGCGCTACCGGATATGTTGAAGGTGTGGATTCTATTCAAATAAGTATC
1 TATGACAAAACCGATAAAGCACTACCAGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATC
*
1146256 GATACTTATGGAATTTTAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
66 GATACTTATGGAATTTAAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
* *
1146321 TGTATCGATACTTAACAATATAAC-GAATAAAAATATGACAAAAACGGTTTCAT
131 TATATCGATACGTAACAATATAACAG-ATAAAAATATGACAAAAACGGTTTCAT
* *
1146374 TATGACAAAACCGGTAAATG-ACTATCAGATATGTTGAAGGTATCGATTCCATTCAAATAAGTAT
1 TATGACAAAACCGATAAA-GCACTACCAGATATGTTGAAGGTATCGATTCCATTCAAATAAGTAT
* *
1146438 CGATACTTTTGGAATTTAAAAGAAAAGCAATAATAGCGCGTATAAAGTATCGATACTTTATAAAC
65 CGATACTTATGGAATTTAAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAAC
*
1146503 ATATATCGATACGTAACAATATAACAGGTAAAAATATGACAAAA
130 ATATATCGATACGTAACAATATAACAGATAAAAATATGACAAAA
1146547 CTGGTAAAGC
Statistics
Matches: 158, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
183 156 0.99
184 2 0.01
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (183 bp):
TATGACAAAACCGATAAAGCACTACCAGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATC
GATACTTATGGAATTTAAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
TATATCGATACGTAACAATATAACAGATAAAAATATGACAAAAACGGTTTCAT
Found at i:1147060 original size:17 final size:17
Alignment explanation
Indices: 1147022--1147073 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
1147012 TTAATGAAGT
1147022 TAGTTCATTAATTAAA-
1 TAGTTCATTAATTAAAC
* *
1147038 TAGTTCATTCATCAAAC
1 TAGTTCATTAATTAAAC
*
1147055 TAGTTCATTTATTAAAC
1 TAGTTCATTAATTAAAC
1147072 TA
1 TA
1147074 ACTCTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.42
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:1148584 original size:20 final size:20
Alignment explanation
Indices: 1148559--1148607 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
1148549 TAGATAAAAA
1148559 TATGACAAAACCGATTTCAT
1 TATGACAAAACCGATTTCAT
*
1148579 TATGACAAAACTGATTTCAT
1 TATGACAAAACCGATTTCAT
1148599 TATGACAAA
1 TATGACAAA
1148608 TCGCTATCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (20 bp):
TATGACAAAACCGATTTCAT
Found at i:1152561 original size:12 final size:12
Alignment explanation
Indices: 1152546--1152584 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
1152536 TTGAAGTTTG
1152546 AATTTAAATTTC
1 AATTTAAATTTC
* * *
1152558 AATTTGAGTTTG
1 AATTTAAATTTC
1152570 AATTTAAATTTC
1 AATTTAAATTTC
1152582 AAT
1 AAT
1152585 ATGAGTTTGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (12 bp):
AATTTAAATTTC
Found at i:1152561 original size:24 final size:23
Alignment explanation
Indices: 1152534--1152598 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 23
1152524 TTTCATTTTT
1152534 AATTGAAGTTTGAATTTAAATTTC
1 AATTG-AGTTTGAATTTAAATTTC
1152558 AATTTGAGTTTGAATTTAAATTTC
1 AA-TTGAGTTTGAATTTAAATTTC
1152582 AATATGAGTTTGAATTT
1 AAT-TGAGTTTGAATTT
1152599 CAATAAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
23 1 0.03
24 35 0.90
25 3 0.08
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (23 bp):
AATTGAGTTTGAATTTAAATTTC
Found at i:1152563 original size:18 final size:18
Alignment explanation
Indices: 1152542--1152580 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1152532 TTAATTGAAG
*
1152542 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTAAA
* *
1152560 TTTGAGTTTGAATTTAAA
1 TTTGAATTTAAATTTAAA
1152578 TTT
1 TTT
1152581 CAATATGAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (18 bp):
TTTGAATTTAAATTTAAA
Found at i:1153115 original size:3 final size:3
Alignment explanation
Indices: 1153107--1153138 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
1153097 GCTATAACTT
*
1153107 ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1153139 TAAAGGGTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:1154199 original size:36 final size:36
Alignment explanation
Indices: 1154118--1154213 Score: 106
Period size: 36 Copynumber: 2.6 Consensus size: 36
1154108 GATATAATAA
* * *
1154118 AATAAAATAAATAATTATAATTTAAAAAGAAAAAAT
1 AATAAAATAAATAATAATAATATAAAAAGAAAAAAG
*
1154154 AATAAAATAAATAATAATAA-ATAAAAAGAGAAAGAG
1 AATAAAATAAATAATAATAATATAAAAAGA-AAAAAG
1154190 AA-AATAATAAAATAATGAATAATA
1 AATAA-AAT-AAATAAT-AATAATA
1154214 GTAGTAAAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
35 10 0.20
36 28 0.55
37 7 0.14
38 5 0.10
39 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (36 bp):
AATAAAATAAATAATAATAATATAAAAAGAAAAAAG
Found at i:1154293 original size:17 final size:18
Alignment explanation
Indices: 1154253--1154294 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1154243 GTTGCTTTTA
*
1154253 AAATAAAAGATAAAAATT
1 AAATAAAAGATAAAAATG
1154271 AAATAAAA-A-AAATAATG
1 AAATAAAAGATAAA-AATG
1154288 AAATAAA
1 AAATAAA
1154295 TAATCTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 11 0.50
18 8 0.36
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (18 bp):
AAATAAAAGATAAAAATG
Found at i:1155098 original size:76 final size:73
Alignment explanation
Indices: 1154885--1155110 Score: 244
Period size: 76 Copynumber: 3.1 Consensus size: 73
1154875 TAAAACATCT
* * * *
1154885 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAAT---AACTAAAAAATAATATTTAAA
1 TAAAACCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACAAAATAAAATATAATATTTAAA
*
1154947 ATAATATTC
65 ATAATATCC
* * * *
1154956 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATA-TA
1 TAAAACCTAATTAAAATACTAAAA-CTATTTAAACTAAAATA-C-AAAATAAA-ATATAATATTT
1155020 AAAATAATATCC
62 AAAATAATATCC
* * *
1155032 TAAAACTTAATTAAAATACTAAAATCTATTTAAAATAAAATACAAAGATAAAATATAATGTTTAA
1 TAAAACCTAATTAAAATACTAAAA-CTATTTAAACTAAAATACAAA-ATAAAATATAATATTTAA
*
1155097 AATATTATCC
64 AATAATATCC
1155107 TAAA
1 TAAA
1155111 CTTGAGTTTA
Statistics
Matches: 130, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
70 5 0.04
71 34 0.26
74 9 0.07
75 21 0.16
76 55 0.42
77 6 0.05
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (73 bp):
TAAAACCTAATTAAAATACTAAAACTATTTAAACTAAAATACAAAATAAAATATAATATTTAAAA
TAATATCC
Found at i:1156102 original size:44 final size:44
Alignment explanation
Indices: 1156052--1156138 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
1156042 ACATGTTGAA
1156052 ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAAT
1 ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAAT
* *
1156096 ATTGACAAAACCGGTTTCAAAATAAATAACTTAACAGGTAAAA
1 ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAA
1156139 AACAGGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.24
Consensus pattern (44 bp):
ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAAT
Found at i:1157670 original size:20 final size:21
Alignment explanation
Indices: 1157644--1157690 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
1157634 TGTTTAATAT
1157644 TTAATATAATATT-TTGTTTAA
1 TTAATATAA-ATTATTGTTTAA
*
1157665 -TAATATAAATTATTTTTTAA
1 TTAATATAAATTATTGTTTAA
1157685 TTAATA
1 TTAATA
1157691 ATTTAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 5 0.22
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAATATAAATTATTGTTTAA
Found at i:1160013 original size:25 final size:24
Alignment explanation
Indices: 1159972--1160023 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
1159962 GATAATATGT
*
1159972 ATTTATTCTCTTAAAATTTTATAA
1 ATTTATTATCTTAAAATTTTATAA
*
1159996 ATTTATCTATCTTTAAATTTTATAA
1 ATTTAT-TATCTTAAAATTTTATAA
1160021 ATT
1 ATT
1160024 CGTCTCTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.56
Consensus pattern (24 bp):
ATTTATTATCTTAAAATTTTATAA
Found at i:1164071 original size:183 final size:183
Alignment explanation
Indices: 1163763--1164228 Score: 767
Period size: 183 Copynumber: 2.5 Consensus size: 183
1163753 CCGGTAAAAA
* * * *
1163763 TATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAGGTGTGGATTCTATTCAAATAAGTATC
1 TATGACAAAACCGGTAAAGCGCTATCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATC
*
1163828 GATACTTATGGAATTTTAAAGAAAAGCAATAATAGCGCCTATAAAGTTTCGATACTTTATAAACA
66 GATACTTATGGAATTTTAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
*
1163893 TGTATCGATACTTAACAATATAAC-GAATAAAAATATGACAAAAACGGTTTCAT
131 TGTATCGATACGTAACAATATAACAG-ATAAAAATATGACAAAAACGGTTTCAT
*
1163946 TATGACAAAACCGGTAAATG-ACTATCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTAT
1 TATGACAAAACCGGTAAA-GCGCTATCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTAT
* * *
1164010 CGATACTTTTGGAATTTAAAAGAAAAGCAATAATAGCGCGTATAAAGTATCGATACTTTATAAAC
65 CGATACTTATGGAATTTTAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAAC
* *
1164075 ATGTATCGATACGTAACAATATAACAGGTAAAAATATGACAAAACCGGTTTCAT
130 ATGTATCGATACGTAACAATATAACAGATAAAAATATGACAAAAACGGTTTCAT
1164129 TATGACAAAACCGGTAAAGCGCTAAT-GGATATGTTGAAGGTATCGATTCCATTCAAATAAGTAT
1 TATGACAAAACCGGTAAAGCGCT-ATCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTAT
*
1164193 CCATACTTATGGAATTTTAAAGAAAAGCAATAATAG
65 CGATACTTATGGAATTTTAAAGAAAAGCAATAATAG
1164229 TGTCTGATGT
Statistics
Matches: 263, Mismatches: 16, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
182 1 0.00
183 258 0.98
184 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (183 bp):
TATGACAAAACCGGTAAAGCGCTATCGGATATGTTGAAGGTATCGATTCCATTCAAATAAGTATC
GATACTTATGGAATTTTAAAGAAAAGCAATAATAGCGCCTATAAAGTATCGATACTTTATAAACA
TGTATCGATACGTAACAATATAACAGATAAAAATATGACAAAAACGGTTTCAT
Found at i:1164652 original size:17 final size:17
Alignment explanation
Indices: 1164614--1164665 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
1164604 TTAATGAAGT
1164614 TAGTTCATTAATTAAA-
1 TAGTTCATTAATTAAAC
* *
1164630 TAGTTCATTCATCAAAC
1 TAGTTCATTAATTAAAC
*
1164647 TAGTTCATTTATTAAAC
1 TAGTTCATTAATTAAAC
1164664 TA
1 TA
1164666 ACTCTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.42
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:1166176 original size:20 final size:20
Alignment explanation
Indices: 1166151--1166199 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
1166141 CAGATAAAAA
1166151 TATGACAAAACCGATTTCAT
1 TATGACAAAACCGATTTCAT
1166171 TATGACAAAACCGATTTCAT
1 TATGACAAAACCGATTTCAT
1166191 TATGACAAA
1 TATGACAAA
1166200 TCGCTATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (20 bp):
TATGACAAAACCGATTTCAT
Found at i:1170153 original size:12 final size:12
Alignment explanation
Indices: 1170138--1170176 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
1170128 TTGAAGTTTG
1170138 AATTTAAATTTC
1 AATTTAAATTTC
* * *
1170150 AATTTGAGTTTG
1 AATTTAAATTTC
1170162 AATTTAAATTTC
1 AATTTAAATTTC
1170174 AAT
1 AAT
1170177 ATGAGTTTGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (12 bp):
AATTTAAATTTC
Found at i:1170153 original size:24 final size:23
Alignment explanation
Indices: 1170126--1170190 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 23
1170116 TTTCATTTTT
1170126 AATTGAAGTTTGAATTTAAATTTC
1 AATTG-AGTTTGAATTTAAATTTC
1170150 AATTTGAGTTTGAATTTAAATTTC
1 AA-TTGAGTTTGAATTTAAATTTC
1170174 AATATGAGTTTGAATTT
1 AAT-TGAGTTTGAATTT
1170191 CAATAAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
23 1 0.03
24 35 0.90
25 3 0.08
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.48
Consensus pattern (23 bp):
AATTGAGTTTGAATTTAAATTTC
Found at i:1170155 original size:18 final size:18
Alignment explanation
Indices: 1170134--1170172 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1170124 TTAATTGAAG
*
1170134 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTAAA
* *
1170152 TTTGAGTTTGAATTTAAA
1 TTTGAATTTAAATTTAAA
1170170 TTT
1 TTT
1170173 CAATATGAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (18 bp):
TTTGAATTTAAATTTAAA
Found at i:1171787 original size:36 final size:36
Alignment explanation
Indices: 1171706--1171801 Score: 106
Period size: 36 Copynumber: 2.6 Consensus size: 36
1171696 CATATAATAA
* * *
1171706 AATAAAATAAATAATTATAATTTAAAAAGAAAAAAT
1 AATAAAATAAATAATAATAATATAAAAAGAAAAAAG
*
1171742 AATAAAATAAATAATAATAA-ATAAAAAGAGAAAGAG
1 AATAAAATAAATAATAATAATATAAAAAGA-AAAAAG
1171778 AA-AATAATAAAATAATGAATAATA
1 AATAA-AAT-AAATAAT-AATAATA
1171802 GTAGTAAAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
35 10 0.20
36 28 0.55
37 7 0.14
38 5 0.10
39 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (36 bp):
AATAAAATAAATAATAATAATATAAAAAGAAAAAAG
Found at i:1171862 original size:18 final size:18
Alignment explanation
Indices: 1171841--1171883 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
1171831 GTTGCTTTTA
*
1171841 AAATAAAAGATAAA-AATT
1 AAATAAAAGA-AAATAATG
1171859 AAATAAAAGAAAATAATG
1 AAATAAAAGAAAATAATG
1171877 AAATAAA
1 AAATAAA
1171884 TAATCTAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (18 bp):
AAATAAAAGAAAATAATG
Found at i:1172554 original size:71 final size:75
Alignment explanation
Indices: 1172473--1172661 Score: 244
Period size: 76 Copynumber: 2.6 Consensus size: 75
1172463 TAAAACATCT
* * *
1172473 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATAACT-AAA-AA-ATAATAT-TTA
1 TAAATCCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATAACTAAAACAAGATAAAATATAA
*
1172533 AAATAATATTC
65 AAATAATATCC
*
1172544 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAATGATAAAATATAA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATAACTAAAACAA-GATAAAATATAA
1172609 AAATAATATCC
65 AAATAATATCC
* * * *
1172620 TAAAACTTAATTAAAATACTAAAATCTATTTAAAATAAAATA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATA
1172662 CAAAGATAAA
Statistics
Matches: 103, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
70 5 0.05
71 37 0.36
72 3 0.03
73 2 0.02
75 6 0.06
76 50 0.49
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.31
Consensus pattern (75 bp):
TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATAACTAAAACAAGATAAAATATAAA
AATAATATCC
Found at i:1172686 original size:76 final size:72
Alignment explanation
Indices: 1172473--1172698 Score: 233
Period size: 76 Copynumber: 3.1 Consensus size: 72
1172463 TAAAACATCT
* * * *
1172473 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAAT--AACTAAAAAATAATATTTAAAA
1 TAAAACCTAATTAAAATAC-TAAAACTATTTAAACTAAAATACAAATAAAATATAATATTTAAAA
*
1172536 TAATATTC
65 TAATATCC
* * * *
1172544 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAA-ACAATGATAAAATATA
1 TAAAACCTAATTAAAATACTAAAA-CTATTTAAACTAAAATA-C-AAATAAAAT-ATAATAT-TT
1172608 AAAATAATATCC
61 AAAATAATATCC
* * *
1172620 TAAAACTTAATTAAAATACTAAAATCTATTTAAAATAAAATACAAAGATAAAATATAATGTTTAA
1 TAAAACCTAATTAAAATACTAAAA-CTATTTAAACTAAAATAC-AA-ATAAAATATAATATTTAA
*
1172685 AATATTATCC
63 AATAATATCC
1172695 TAAA
1 TAAA
1172699 CTTGAGTTTA
Statistics
Matches: 129, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
70 5 0.04
71 34 0.26
74 3 0.02
75 27 0.21
76 56 0.43
77 4 0.03
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (72 bp):
TAAAACCTAATTAAAATACTAAAACTATTTAAACTAAAATACAAATAAAATATAATATTTAAAAT
AATATCC
Found at i:1172913 original size:2 final size:2
Alignment explanation
Indices: 1172906--1172994 Score: 178
Period size: 2 Copynumber: 44.5 Consensus size: 2
1172896 TCATGTATCA
1172906 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1172948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1172990 AT AT A
1 AT AT A
1172995 CTTTAATTCC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 87 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1173762 original size:44 final size:44
Alignment explanation
Indices: 1173712--1173798 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
1173702 ACATGTTGAA
1173712 ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAAT
1 ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAAT
* *
1173756 ATTGACAAAACCGGTTTCAAAATAAATAACTTAACAGGTAAAA
1 ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAA
1173799 AACAGGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.24
Consensus pattern (44 bp):
ATTGACAAAACCGATTTCAAAATAAATAACTTAACAAGTAAAAT
Found at i:1174059 original size:20 final size:20
Alignment explanation
Indices: 1174014--1174059 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
1174004 GTTTACATAA
*
1174014 AGTATCGATACTTTTTGTAT
1 AGTATCGATACTTTTTGTAC
*
1174034 ATGTATCGATACTTTTTGTCC
1 A-GTATCGATACTTTTTGTAC
1174055 AGTAT
1 AGTAT
1174060 GCTTCCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (20 bp):
AGTATCGATACTTTTTGTAC
Found at i:1174720 original size:117 final size:115
Alignment explanation
Indices: 1174527--1174788 Score: 337
Period size: 117 Copynumber: 2.2 Consensus size: 115
1174517 TAATAACAAA
** * * *
1174527 TCCAGTAATTAACCTATTTTGTTATCGTCGGATTTCCAAAACCCCGTTGCTTAAAAAGGCGCTAC
1 TCCAGTAATTAA-CTGGTATGTTATCGTCGGATTTCCAAAACCCCATAGCTTAAAAAGGCGCTAC
* *
1174592 CTATTACGTTATATAAACGCTACCTAATATGTTATTATGCTTGATAATGTT
65 CTATTACGTTATATAAACACTACCTAATATATTATTATGCTTGATAATGTT
* * * *
1174643 TCCAGTAATTAACTGGTATGTTATCGTCGGATTTTCAAAGCTCCATCAGCTTTAACAAGGCGCTA
1 TCCAGTAATTAACTGGTATGTTATCGTCGGATTTCCAAAACCCCAT-AGC-TTAAAAAGGCGCTA
* *
1174708 CCTATTACGTTATATAAGCACTACCTAATATATTATTGTGCTTGATAATGTT
64 CCTATTACGTTATATAAACACTACCTAATATATTATTATGCTTGATAATGTT
**
1174760 TCCAAAAATTAA-TCGGTTATGTTATCGTC
1 TCCAGTAATTAACT-GG-TATGTTATCGTC
1174789 TATATATTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
115 27 0.21
116 15 0.12
117 73 0.57
118 12 0.09
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (115 bp):
TCCAGTAATTAACTGGTATGTTATCGTCGGATTTCCAAAACCCCATAGCTTAAAAAGGCGCTACC
TATTACGTTATATAAACACTACCTAATATATTATTATGCTTGATAATGTT
Found at i:1175334 original size:20 final size:21
Alignment explanation
Indices: 1175308--1175354 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
1175298 TGTTTAATAT
1175308 TTAATATAATATT-TTGTTTAA
1 TTAATATAA-ATTATTGTTTAA
*
1175329 -TAATATAAATTATTTTTTAA
1 TTAATATAAATTATTGTTTAA
1175349 TTAATA
1 TTAATA
1175355 ATTTAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 5 0.22
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAATATAAATTATTGTTTAA
Found at i:1177677 original size:25 final size:25
Alignment explanation
Indices: 1177636--1177692 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
1177626 GATAATATGT
*
1177636 ATTTAT-TCTCTTAAAATTTTATAA
1 ATTTATCTATCTTAAAATTTTATAA
*
1177660 ATTTATCTATCTTTAAATTTTATAA
1 ATTTATCTATCTTAAAATTTTATAA
*
1177685 ATTCATCT
1 ATTTATCT
1177693 CTCGATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 6 0.21
25 23 0.79
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTTATCTATCTTAAAATTTTATAA
Found at i:1178343 original size:47 final size:47
Alignment explanation
Indices: 1178291--1178385 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
1178281 GATGCCGTTT
1178291 TAAGCATCAAAATGATCGCACTAAAATAATGTTGTTTTGGTGTGAAA
1 TAAGCATCAAAATGATCGCACTAAAATAATGTTGTTTTGGTGTGAAA
1178338 TAAGCATCAAAATGATCGCACTAAAATAATGTTGTTTTGGTGTGAAA
1 TAAGCATCAAAATGATCGCACTAAAATAATGTTGTTTTGGTGTGAAA
1178385 T
1 T
1178386 GTCACGTCAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.33
Consensus pattern (47 bp):
TAAGCATCAAAATGATCGCACTAAAATAATGTTGTTTTGGTGTGAAA
Found at i:1180434 original size:20 final size:20
Alignment explanation
Indices: 1180409--1180454 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
1180399 CTCTGGTATT
1180409 GATACCGGGATAGTGATATC
1 GATACCGGGATAGTGATATC
1180429 GATACCGGGATAGTGATATC
1 GATACCGGGATAGTGATATC
1180449 GATACC
1 GATACC
1180455 AGACTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (20 bp):
GATACCGGGATAGTGATATC
Found at i:1182558 original size:3 final size:3
Alignment explanation
Indices: 1182550--1182579 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
1182540 TTTATGGCTA
*
1182550 AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1182580 TAAAAGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1183978 original size:3 final size:3
Alignment explanation
Indices: 1183970--1184023 Score: 58
Period size: 3 Copynumber: 18.7 Consensus size: 3
1183960 GGCTTGTTTG
* * **
1183970 TAA TAA TAA TAA TTA TTA TTT TAA TAA TAA TAA T-A TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1184016 TAA TAA TA
1 TAA TAA TA
1184024 TTAAAAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 4 0.09
3 41 0.91
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (3 bp):
TAA
Found at i:1184613 original size:113 final size:113
Alignment explanation
Indices: 1184487--1185353 Score: 1211
Period size: 113 Copynumber: 7.7 Consensus size: 113
1184477 GAATTTGAGC
* * *
1184487 AACAAGTTCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTTATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * *
1184552 GCCCTGGCAATGCTGGTCCATCGAATGATAAATTCAAGCGAAAA-GTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGC-AAAAGGTTG
1184600 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
** * *
1184665 GGCCTGGTAATGCTGATCCATTGAATGATGAATTCAAGCGAAAA-GTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGC-AAAAGGTTG
* *
1184713 AACAAGCTCTTCTCATTATAAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
** * * *
1184778 TTTC-AGAAATGTTGATCCATCGAATGATGAATTCAAGTGAAAA-GTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAG-CAAAAGGTTG
*
1184825 AACAAGTTCTTCTCAATATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * * *
1184890 TACCTGGTAATGATGATCCATTGAATGATGAATTCAAACAAAAGGTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGCAAAAGGTTG
* * *
1184938 AACAAATTCTTCTCATTATGATCTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTA
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * * **
1185003 TCTCTGGAAAAGCTGATCCATCGAGTGATGGATTTGAGCAAAAGGTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGCAAAAGGTTG
*
1185051 AACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * *
1185116 TACCTGGTAATGATGATCCATCGAATGATGAATTCAAACAAAAGGTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGCAAAAGGTTG
* *
1185164 AACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTA
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * * * * **
1185229 TCTCTGGAAAAGCTAATCTATCGAGTGATGGATTTGAGCAAAAGGTTG
66 TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGCAAAAGGTTG
* * *
1185277 AATACGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
*
1185342 TACCTGGAAATG
66 TCCCTGGAAATG
1185354 TTTTAAGAAA
Statistics
Matches: 670, Mismatches: 81, Indels: 6
0.89 0.11 0.01
Matches are distributed among these distances:
112 105 0.16
113 565 0.84
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (113 bp):
AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
TCCCTGGAAATGCTGATCCATCGAATGATGAATTCAAGCAAAAGGTTG
Found at i:1185126 original size:226 final size:225
Alignment explanation
Indices: 1184359--1185353 Score: 1350
Period size: 226 Copynumber: 4.4 Consensus size: 225
1184349 ATCTCCTTCT
* * *
1184359 ATGATAGAA-TCATGCAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCCTCA
1 ATGAT-GAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * * *
1184423 GATGAATTCTTCTCATTATGAACTCT-CTCTGGAAAAGTTGATCCATCGAGTGATGAATT-----
65 GATGAGTTCTTCTCATTATGAACTCTAC-CTGGTAATGATGATCCATCGAATGATGAATTCAAAC
** * * * * *
1184482 -TGAG--CAACAAGTTCTTCTCATTATGAATTTCTTCTTCTTTCTTCAGATGAGTTCTTCTTATT
129 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
** * * * *
1184544 ATGAACTCGCCCTGGCAATGCTGGTCCATCGA
194 ATGAACTATCTCTGGAAAAGCTGATCCATCGA
*
1184576 ATGATAAATTCAAGCGAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 ATGATGAATTCAAGC-AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
** * * *
1184640 GATGAGTTCTTCTCATTATGAACTCGGCCTGGTAATGCTGATCCATTGAATGATGAATTCAAGCG
65 GATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGATGATCCATCGAATGATGAATTCAAAC-
** *
1184705 AAAAGTTGAACAAGCTCTTCTCATTATAAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
129 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * *
1184770 ATGAACTCTTTC-AGAAATGTTGATCCATCGA
194 ATGAACTATCTCTGGAAAAGCTGATCCATCGA
* *
1184801 ATGATGAATTCAAGTGAAAA-GTTGAACAAGTTCTTCTCAATATGAACTTCTTCTTCCTTCTTCA
1 ATGATGAATTCAAG-CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
*
1184865 GATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGATGATCCATTGAATGATGAATTCAAACA
65 GATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGATGATCCATCGAATGATGAATTCAAACA
*
1184930 AAAGGTTGAACAAATTCTTCTCATTATGATCTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
130 AAA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1184995 ATGAACTATCTCTGGAAAAGCTGATCCATCGA
194 ATGAACTATCTCTGGAAAAGCTGATCCATCGA
* * ** *
1185027 GTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
1 ATGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
1185092 ATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGATGATCCATCGAATGATGAATTCAAACAA
66 ATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGATGATCCATCGAATGATGAATTCAAACAA
1185157 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
131 AA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* *
1185222 TGAACTATCTCTGGAAAAGCTAATCTATCGA
195 TGAACTATCTCTGGAAAAGCTGATCCATCGA
* * ** * * *
1185253 GTGATGGATTTGAGCAAAAGGTTGAATACGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
1 ATGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
*
1185318 ATGAGTTCTTCTCATTATGAACTCTACCTGGAAATG
66 ATGAGTTCTTCTCATTATGAACTCTACCTGGTAATG
1185354 TTTTAAGAAA
Statistics
Matches: 706, Mismatches: 56, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
216 2 0.00
217 102 0.14
218 5 0.01
224 6 0.01
225 206 0.29
226 385 0.55
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (225 bp):
ATGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
ATGAGTTCTTCTCATTATGAACTCTACCTGGTAATGATGATCCATCGAATGATGAATTCAAACAA
AAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
GAACTATCTCTGGAAAAGCTGATCCATCGA
Found at i:1186168 original size:22 final size:22
Alignment explanation
Indices: 1186143--1186219 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
1186133 CATAAAGCTT
1186143 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
1186165 TCATCTTTAAAAAGAGAATATA
1 TCATCTTTGAAAAGAGAATCTA
1186187 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
1186209 TCATCTTTGAA
1 TCATCTTTGAA
1186220 GAGTGTAGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:1186681 original size:54 final size:55
Alignment explanation
Indices: 1186586--1186691 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
1186576 AGAATAACTA
* *
1186586 GTTCGTAAAACATTTTGACAACACATTCTTCATCTCATGTGGTTTCAGCTCAAAT
1 GTTCGTAAAACATTTTGACAACACATTCTCCATCTCATGTGGCTTCAGCTCAAAT
* * * *
1186641 GTTCGTAAAGCA-TTTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCA
1 GTTCGTAAAACATTTTGACAACACATTC-TCCATCTCATGTGGCTTCAGCTCA
1186692 GATTTCTCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 28 0.64
55 16 0.36
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (55 bp):
GTTCGTAAAACATTTTGACAACACATTCTCCATCTCATGTGGCTTCAGCTCAAAT
Found at i:1187645 original size:75 final size:73
Alignment explanation
Indices: 1187560--1187737 Score: 198
Period size: 74 Copynumber: 2.4 Consensus size: 73
1187550 AATGATGATG
* * *
1187560 TGGGCCTTCAGCATG-CCCAGCATTTGCTAATACAAATATTCA-AAAATGCATCAATAATCCTAA
1 TGGGCTTTCAGCATGCCCCAACATTTGCTAAT--AAATATTCAGAAAAT--ATCAACAATCCTAA
1187623 TTCTGATTGAAA
62 TTCTGATTGAAA
* * * * * *
1187635 TGGGCTTTCAGCATGCCCCAACATTTTGCTGATAAATATTCAGAATATTTCAACATTTCTGATTC
1 TGGGCTTTCAGCATGCCCCAACA-TTTGCTAATAAATATTCAGAAAATATCAACAATCCTAATTC
1187700 TGATTGAAA
65 TGATTGAAA
* *
1187709 AGGGTTTTCAGCATGCCCCAACATTTGCT
1 TGGGCTTTCAGCATGCCCCAACATTTGCT
1187738 TCTTGTTAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
73 6 0.07
74 42 0.47
75 23 0.26
76 10 0.11
77 8 0.09
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (73 bp):
TGGGCTTTCAGCATGCCCCAACATTTGCTAATAAATATTCAGAAAATATCAACAATCCTAATTCT
GATTGAAA
Found at i:1189047 original size:115 final size:114
Alignment explanation
Indices: 1188846--1189069 Score: 358
Period size: 115 Copynumber: 2.0 Consensus size: 114
1188836 GATCATGCAG
* * * * *
1188846 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGATCCAGATCCGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
1188911 ATACTTCCAGAAGATGCTATTGGGGCTCCTTATTTCTACTATGAACAAA
66 ACACTTCCAGAAGATGCTATTGGGGCTCCTTATTTCTACTATGAACAAA
* *
1188960 TTCATCTTTCAAATCTAATGATTGGTTTTGGGGGTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCT-GGGGTTCATACCAAACCAGATCAGATAACTCAAAG
*
1189025 AACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGA
65 AACACTTCCAGAAGATGCTATTGGGGCTCCTTATTTCTACTATGA
1189070 GCATCTTTCG
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
114 26 0.26
115 74 0.74
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGGCTCCTTATTTCTACTATGAACAAA
Found at i:1191088 original size:11 final size:10
Alignment explanation
Indices: 1191069--1191131 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 10
1191059 TTTCTCCCCT
1191069 TTTTCTTTTTCC
1 TTTT-TTTTT-C
1191081 TTTTTTTTTC
1 TTTTTTTTTC
*
1191091 TTTTTTTTCATT
1 TTTTTTTT--TC
1191103 TTTTCTTTTTC
1 TTTT-TTTTTC
*
1191114 ATCTTTTTTTC
1 -TTTTTTTTTC
1191125 TTTTTTT
1 TTTTTTT
1191132 CTTACTTTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
10 15 0.35
11 12 0.28
12 12 0.28
13 4 0.09
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:1191088 original size:17 final size:16
Alignment explanation
Indices: 1191068--1191129 Score: 72
Period size: 17 Copynumber: 3.7 Consensus size: 16
1191058 ATTTCTCCCC
1191068 TTTTTCTTTTTCCTTTT
1 TTTTTCTTTTT-CTTTT
1191085 TTTTTCTTTTT-TTTCAT
1 TTTTTCTTTTTCTTT--T
*
1191102 TTTTTCTTTTTCATCTT
1 TTTTTCTTTTTC-TTTT
1191119 TTTTTCTTTTT
1 TTTTTCTTTTT
1191130 TTCTTACTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
15 3 0.08
17 35 0.88
19 2 0.05
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTCTTTTTCTTTT
Found at i:1191094 original size:8 final size:8
Alignment explanation
Indices: 1191068--1191134 Score: 73
Period size: 8 Copynumber: 8.0 Consensus size: 8
1191058 ATTTCTCCCC
1191068 TTTTTCTT
1 TTTTTCTT
1191076 TTTCCTT-TT
1 TTT--TTCTT
1191085 TTTTTCTTT
1 TTTTTC-TT
*
1191094 TTTTTCAT
1 TTTTTCTT
1191102 TTTTTCTT
1 TTTTTCTT
*
1191110 TTTCATCTT
1 TTT-TTCTT
1191119 TTTTTCTT
1 TTTTTCTT
1191127 TTTTTCTT
1 TTTTTCTT
1191135 ACTTTGCTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
7 2 0.04
8 26 0.52
9 20 0.40
10 2 0.04
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTCTT
Found at i:1191111 original size:25 final size:25
Alignment explanation
Indices: 1191081--1191134 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
1191071 TTCTTTTTCC
1191081 TTTT-TTTTTC-T-TTTTTTTCATT
1 TTTTCTTTTTCATCTTTTTTTCATT
*
1191103 TTTTCTTTTTCATCTTTTTTTCTTT
1 TTTTCTTTTTCATCTTTTTTTCATT
1191128 TTTTCTT
1 TTTTCTT
1191135 ACTTTGCTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 6 0.21
24 1 0.04
25 17 0.61
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (25 bp):
TTTTCTTTTTCATCTTTTTTTCATT
Found at i:1191149 original size:27 final size:26
Alignment explanation
Indices: 1191119--1191172 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1191109 TTTTCATCTT
1191119 TTTTTCTTTTTTTCTTACTTTGCTGGA
1 TTTTTC-TTTTTTCTTACTTTGCTGGA
*
1191146 TTTTTCTTTTTTCTTTCTTTGCTGGA
1 TTTTTCTTTTTTCTTACTTTGCTGGA
1191172 T
1 T
1191173 GAGTATAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.06, C:0.15, G:0.11, T:0.69
Consensus pattern (26 bp):
TTTTTCTTTTTTCTTACTTTGCTGGA
Found at i:1193994 original size:6 final size:6
Alignment explanation
Indices: 1193980--1194046 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
1193970 ATTATGTAAG
* * * * * *
1193980 AATGAA AATGTA AATATA AACGTA AA--AA AATGCA AATGCA AATGTA
1 AATGTA AATGTA AATGTA AATGTA AATGTA AATGTA AATGTA AATGTA
*
1194026 AATGCA AATGTA AATGTA AAT
1 AATGTA AATGTA AATGTA AAT
1194047 ATGTGAATGT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
4 3 0.06
6 47 0.94
ACGTcount: A:0.57, C:0.06, G:0.13, T:0.24
Consensus pattern (6 bp):
AATGTA
Found at i:1194030 original size:18 final size:18
Alignment explanation
Indices: 1194007--1194046 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
1193997 AAACGTAAAA
1194007 AAATGCAAATGCAAATGT
1 AAATGCAAATGCAAATGT
*
1194025 AAATGCAAATGTAAATGT
1 AAATGCAAATGCAAATGT
1194043 AAAT
1 AAAT
1194047 ATGTGAATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.07, G:0.15, T:0.25
Consensus pattern (18 bp):
AAATGCAAATGCAAATGT
Found at i:1195607 original size:20 final size:20
Alignment explanation
Indices: 1195582--1195633 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1195572 CTAACAGACA
*
1195582 AATAAAATAATTAATACATT
1 AATAAAATAATAAATACATT
* *
1195602 AATAAAATAAAAAATATATT
1 AATAAAATAATAAATACATT
1195622 AATAAAATAATA
1 AATAAAATAATA
1195634 TAAAAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
AATAAAATAATAAATACATT
Found at i:1195637 original size:25 final size:26
Alignment explanation
Indices: 1195585--1195643 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
1195575 ACAGACAAAT
1195585 AAAATAATTAATACATTAATAAAATAA
1 AAAATAATTAATACA-TAATAAAATAA
*
1195612 AAAATATATTAATA-A-AATAATAT-A
1 AAAATA-ATTAATACATAATAAAATAA
1195636 AAAATAAT
1 AAAATAAT
1195644 AAGTAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 2 0.07
24 7 0.23
25 7 0.23
27 7 0.23
28 7 0.23
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
AAAATAATTAATACATAATAAAATAA
Found at i:1195641 original size:16 final size:16
Alignment explanation
Indices: 1195605--1195657 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
1195595 ATACATTAAT
1195605 AAAATAAAA-AATATA
1 AAAATAAAATAATATA
**
1195620 TTAATAAAATAATATA
1 AAAATAAAATAATATA
1195636 AAAATAATAAGTAATA-A
1 AAAATAA-AA-TAATATA
1195653 AAAAT
1 AAAAT
1195658 TTGAAAGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 7 0.23
16 11 0.35
17 8 0.26
18 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (16 bp):
AAAATAAAATAATATA
Found at i:1196297 original size:20 final size:19
Alignment explanation
Indices: 1196258--1196299 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
1196248 TTTCCTCGAT
1196258 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
1196277 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
1196297 ATT
1 ATT
1196300 TATAAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:1196491 original size:3 final size:3
Alignment explanation
Indices: 1196483--1196515 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
1196473 TTTATGGCTA
*
1196483 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1196516 TAAAAGTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1196828 original size:14 final size:15
Alignment explanation
Indices: 1196809--1196841 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
1196799 ACTAAATCCG
*
1196809 TATTTTATCTAAA-A
1 TATTTTATATAAACA
1196823 TATTTTATATAAACA
1 TATTTTATATAAACA
1196838 TATT
1 TATT
1196842 AGTGATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTTATATAAACA
Found at i:1205175 original size:3 final size:3
Alignment explanation
Indices: 1205167--1205230 Score: 69
Period size: 3 Copynumber: 21.3 Consensus size: 3
1205157 CATTTAAATT
* * *
1205167 TTA TTA TTA TTA TTA TTA -AA TTTA TTA TTA CTAA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA TTA
1205213 TTA TTA TTA -TA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
1205231 ATATATATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
2 3 0.06
3 45 0.88
4 3 0.06
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:1205211 original size:37 final size:36
Alignment explanation
Indices: 1205161--1205230 Score: 113
Period size: 37 Copynumber: 1.9 Consensus size: 36
1205151 TTTTTTCATT
*
1205161 TAAATTTTATTATTATTATTATTAAATTTATTATTAC
1 TAAATATTATTATTATTATTATTAAA-TTATTATTAC
*
1205198 TAAATATTATTATTATTATTATTATATTATTAT
1 TAAATATTATTATTATTATTATTAAATTATTAT
1205231 ATATATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 7 0.23
37 24 0.77
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (36 bp):
TAAATATTATTATTATTATTATTAAATTATTATTAC
Found at i:1205235 original size:12 final size:12
Alignment explanation
Indices: 1205167--1205246 Score: 66
Period size: 12 Copynumber: 7.1 Consensus size: 12
1205157 CATTTAAATT
1205167 TTATTAT-TATTA
1 TTATTATATA-TA
* *
1205179 TTATTAAATTTA
1 TTATTATATATA
*
1205191 TTATTACTAAATA
1 TTATTA-TATATA
1205204 TTA-T-TAT-TA
1 TTATTATATATA
1205213 TTATTAT-TATA
1 TTATTATATATA
1205224 TTATTATATATA
1 TTATTATATATA
1205236 -TA-TATATATA
1 TTATTATATATA
1205246 T
1 T
1205247 ACAAAAGCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
9 5 0.09
10 12 0.22
11 12 0.22
12 19 0.35
13 7 0.13
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATATATA
Found at i:1205615 original size:1 final size:1
Alignment explanation
Indices: 1205609--1205634 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
1205599 ACTGAACCTG
1205609 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
1205635 GAGGAGGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1207252 original size:20 final size:21
Alignment explanation
Indices: 1207229--1207280 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
1207219 AGAAATTAAA
1207229 AATTCATTTATTT-AATTTTT
1 AATTCATTTATTTAAATTTTT
* *
1207249 AATTCTTTTCTTTCAAATTTTT
1 AATTCATTTATTT-AAATTTTT
1207271 -ATT-ATTTATT
1 AATTCATTTATT
1207281 ATTTTATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (21 bp):
AATTCATTTATTTAAATTTTT
Found at i:1214431 original size:83 final size:83
Alignment explanation
Indices: 1214314--1214597 Score: 498
Period size: 83 Copynumber: 3.4 Consensus size: 83
1214304 ACCACAGAAT
* * *
1214314 CAATCATTGAATTTTGA-AGATGAATGTGCTCATAGCATATTCTAGAAGTGTTCTTTGAGTTATC
1 CAATCATTGAA-TTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATC
1214378 TGATCTGGTTTGGTAAAAC
65 TGATCTGGTTTGGTAAAAC
1214397 CAATCATTGAATTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCT
1 CAATCATTGAATTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCT
1214462 GATCTGGTTTGGTAAAAC
66 GATCTGGTTTGGTAAAAC
1214480 CAATCATTGAATTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCT
1 CAATCATTGAATTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCT
1214545 GATCTGGTTTGGTAAAAC
66 GATCTGGTTTGGTAAAAC
* * *
1214563 CAATCATTGAATTTAAAAGATGAATTTGCTCATAG
1 CAATCATTGAATTTGAGAGATGAATGTGCTCATAG
1214598 TAAAAATAAG
Statistics
Matches: 194, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
82 5 0.03
83 189 0.97
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (83 bp):
CAATCATTGAATTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCT
GATCTGGTTTGGTAAAAC
Found at i:1214542 original size:166 final size:169
Alignment explanation
Indices: 1214252--1214597 Score: 538
Period size: 166 Copynumber: 2.0 Consensus size: 169
1214242 TAAGGAGACC
1214252 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATAAACCACAGAATCAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-ATAAA-CAC---A-CAA
1214317 TCATTGAATTTTGAAGATGAATGTGCTCATAGCATATTCTAGAAGTGTTCTTTGAGTTATCTGAT
60 TCATTGAATTTTGAAGATGAATGTGCTCATAGCATATTCTAGAAGTGTTCTTTGAGTTATCTGAT
* *
1214382 CTGGTTTGGTAAAACCAATCATTGAATTTGAGAGATGAATGTGCT
125 CTGGTTTGGTAAAACCAATCATTGAATTTAAAAGATGAATGTGCT
*
1214427 CATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-TAAA-AC-CAATCATTG
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGATAAACACACAATCATTG
* * *
1214489 AA-TTTGAGAGATGAATGTGCTCATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGT
66 AATTTTGA-AGATGAATGTGCTCATAGCATATTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGT
*
1214553 TTGGTAAAACCAATCATTGAATTTAAAAGATGAATTTGCT
130 TTGGTAAAACCAATCATTGAATTTAAAAGATGAATGTGCT
1214593 CATAG
1 CATAG
1214598 TAAAAATAAG
Statistics
Matches: 163, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
165 5 0.03
166 106 0.65
171 2 0.01
173 4 0.02
175 46 0.28
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (169 bp):
CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGATAAACACACAATCATTG
AATTTTGAAGATGAATGTGCTCATAGCATATTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTT
TGGTAAAACCAATCATTGAATTTAAAAGATGAATGTGCT
Done.