Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007785.1 Hibiscus syriacus cultivar Beakdansim tig00110070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140209

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5167--5201
13
2.7
13
100
0
70
31
37
22
8
1.85
6080--6138
28
2.1
28
81
6
66
59
13
15
11
1.62
10352--10708
179
2.0
178
97
1
671
34
17
13
34
1.89
23314--23496
91
2.0
91
91
0
294
28
23
27
20
1.99
25193--25235
23
1.9
21
81
13
50
34
13
18
32
1.90
27636--27679
18
2.4
18
100
0
88
18
13
36
31
1.90
56752--56808
21
2.5
22
80
11
62
75
3
17
3
1.09
56766--56827
26
2.5
26
82
14
78
70
4
17
6
1.26
56751--56828
24
3.2
23
76
18
68
71
3
19
5
1.20
59313--59362
19
2.5
20
90
3
75
44
6
14
36
1.69
60261--60320
30
2.0
31
86
3
86
53
10
8
28
1.63
73497--73694
99
2.0
99
100
0
396
30
29
22
18
1.97
75894--76007
57
2.0
57
100
0
228
29
19
29
21
1.97
87756--87806
21
2.5
21
90
6
79
47
5
11
35
1.65
88717--88776
30
2.0
31
83
3
77
55
10
8
26
1.61
88828--88960
44
3.1
44
65
20
127
40
9
18
31
1.83
88825--88996
84
2.0
85
98
1
337
40
9
18
32
1.82
91570--91617
19
2.4
20
86
13
64
64
0
10
25
1.25
92022--92073
19
2.6
21
90
6
81
46
5
13
34
1.67
95444--95522
37
2.2
37
88
6
119
31
36
3
27
1.75
97291--97472
90
2.0
91
89
1
276
20
27
24
27
1.99
98218--98263
22
2.0
22
83
12
56
52
13
2
32
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101960--102025
21
3.3
19
79
10
78
0
6
16
77
0.96
101967--102025
20
3.0
20
80
5
66
0
6
13
79
0.92
101978--102004
12
2.2
12
100
0
54
0
14
7
77
0.97
101999--102024
12
2.2
12
100
0
52
0
0
15
84
0.62
102870--102915
22
2.0
22
83
12
56
52
13
0
34
1.40
107209--107338
63
2.1
63
95
2
235
26
11
27
33
1.91
108528--108585
7
7.9
7
81
12
64
0
6
10
82
0.83
108516--108572
16
3.4
17
76
18
57
0
10
12
77
1.00
108516--108552
20
1.9
20
88
5
58
0
10
10
78
0.97
108527--108587
22
2.8
20
82
9
59
0
6
11
81
0.85
108528--108585
14
3.9
15
82
13
75
0
6
10
82
0.83
115662--115799
71
1.9
72
81
8
167
40
21
16
21
1.91
120274--120316
23
1.9
21
81
13
50
34
13
18
32
1.90
124093--124135
14
3.1
14
86
3
52
27
39
0
32
1.57
127481--127540
30
2.0
31
83
3
77
26
8
10
55
1.61
128444--128491
20
2.5
20
86
10
64
35
10
6
47
1.63
134988--135037
14
3.9
13
73
21
52
78
2
20
0
0.86
134982--135037
19
3.1
18
82
17
71
78
1
19
0
0.84
134982--135037
11
4.7
11
74
21
51
78
1
19
0
0.84

Tables:   1

The End!