genome.fa.s7788.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007788.1 Hibiscus syriacus cultivar Beakdansim tig00110074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141916

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3280--3331	18	2.8	18	81	18	63	0	19	3	76	0.93
28666--28737	17	4.2	17	82	5	74	36	13	9	40	1.78
29324--29364	22	1.9	21	90	5	64	26	2	34	36	1.70
31006--31040	18	1.9	18	88	11	54	28	11	28	31	1.92
33857--33897	22	1.9	21	85	14	57	26	4	34	34	1.78
34772--34810	11	3.6	11	89	6	62	23	30	12	33	1.92
35911--36092	91	2.0	90	88	3	267	20	28	21	29	1.98
36799--36825	14	1.9	14	100	0	54	77	7	7	7	1.12
39796--39843	10	4.7	10	76	2	51	81	10	8	0	0.88
39800--39843	20	2.3	19	92	7	72	81	9	9	0	0.87
50323--50443	11	10.2	11	71	23	86	28	3	36	31	1.74
50329--50443	23	4.8	24	71	24	82	28	3	37	30	1.74
50308--50445	36	3.9	36	97	0	251	29	3	36	30	1.75
54348--54469	11	10.2	12	71	23	64	30	3	36	30	1.74
54353--54467	23	4.8	24	71	24	82	29	3	36	30	1.74
54330--54469	36	3.9	36	95	0	246	30	3	35	30	1.75
54806--54856	19	2.6	20	87	3	68	45	5	15	33	1.71
58431--58473	23	1.9	21	81	13	50	32	18	13	34	1.90
60174--60356	91	2.0	91	91	0	294	19	26	23	30	1.98
90398--90431	5	7.2	5	90	9	54	0	17	0	82	0.67
90398--90438	14	2.8	15	85	10	50	0	21	0	78	0.76
90426--90479	23	2.2	25	90	6	85	9	20	11	59	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96853--96909	28	2.1	26	83	6	69	8	15	15	59	1.59
99506--99535	13	2.4	13	94	5	53	26	30	0	43	1.55
105116--105158	23	1.9	21	81	13	50	34	13	18	32	1.90
116848--116874	13	2.1	13	100	0	54	37	0	29	33	1.58
121906--121948	20	2.2	20	87	4	61	81	6	11	0	0.87
121979--122027	24	2.1	24	84	3	64	71	6	18	4	1.23
122593--123974	686	2.0	687	96	0	2577	34	17	22	25	1.95
128389--128451	26	2.5	26	87	10	87	73	4	15	6	1.21
137888--138036	72	2.1	72	91	2	237	26	19	26	27	1.99
140778--140809	16	2.0	16	100	0	64	31	18	6	43	1.75

Tables:   1

The End!