Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007789.1 Hibiscus syriacus cultivar Beakdansim tig00110075_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  257081

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3356--3419
33
1.9
34
90
3
103
31
34
3
31
1.73
3802--3845
20
2.2
20
88
4
63
81
6
11
0
0.86
3876--3924
24
2.1
24
84
3
64
71
6
18
4
1.23
10245--10307
26
2.5
26
85
14
80
71
4
17
6
1.25
19714--19864
73
2.1
73
92
0
248
25
19
26
28
1.99
22611--22642
16
2.0
16
100
0
64
31
18
6
43
1.75
36599--36785
93
2.0
93
97
0
356
27
23
12
35
1.92
40825--40863
20
2.0
20
85
10
53
0
25
0
74
0.82
48125--48174
23
2.3
22
81
18
61
70
4
18
8
1.28
48130--48173
24
1.9
23
86
9
63
70
4
15
9
1.30
48113--48173
26
2.5
24
82
15
65
72
4
16
6
1.24
64105--64178
35
2.1
35
82
5
85
33
32
4
29
1.76
65028--65107
35
2.2
37
88
4
119
28
3
36
31
1.75
74154--74192
16
2.4
16
86
0
51
71
2
15
10
1.23
74397--74443
22
2.2
20
85
11
58
0
12
6
80
0.88
74821--74900
35
2.2
37
86
4
110
28
2
36
32
1.71
81040--81506
243
1.9
244
92
0
783
25
25
9
39
1.86
100447--100489
21
2.0
22
86
8
63
13
6
11
67
1.41
103607--103655
11
4.8
10
83
16
57
79
2
18
0
0.83
108953--109003
19
2.6
20
90
3
77
43
5
13
37
1.69
109865--109924
30
2.0
31
86
3
86
53
6
8
31
1.57
113766--113830
27
2.5
27
83
14
75
7
15
4
72
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113790--113840
18
2.8
18
85
8
59
3
15
5
74
1.16
124114--124166
24
2.2
24
87
12
83
58
13
16
11
1.63
124117--124167
25
2.1
25
92
7
88
58
13
15
11
1.63
124156--124188
14
2.4
14
90
10
50
78
0
21
0
0.75
124458--124516
17
3.5
17
68
13
50
30
13
8
47
1.73
125718--125757
17
2.4
17
86
0
53
32
15
12
40
1.84
125813--125860
18
2.7
18
86
0
69
37
6
10
45
1.64
128648--128687
17
2.4
17
86
0
53
30
15
15
40
1.87
128743--128790
18
2.7
18
86
0
69
37
6
10
45
1.64
135460--135489
8
3.9
8
95
4
53
90
0
0
10
0.47
137439--137476
17
2.2
18
85
4
51
34
13
10
42
1.78
137483--137541
17
3.5
17
68
13
50
30
13
8
47
1.73
140320--140359
17
2.4
17
86
0
53
32
15
12
40
1.84
140415--140460
18
2.6
18
85
0
65
36
4
13
45
1.63
143230--143269
17
2.4
17
86
0
53
30
15
15
40
1.87
146056--146095
17
2.4
17
86
0
53
30
15
15
40
1.87
146151--146196
18
2.6
18
92
0
74
32
6
13
47
1.68
146942--146971
9
3.3
9
95
0
51
90
0
6
3
0.56
148910--148949
17
2.4
17
86
0
53
30
15
15
40
1.87
149005--149050
18
2.6
18
92
0
74
32
6
13
47
1.68
151767--151806
17
2.4
17
86
0
53
30
15
15
40
1.87
151862--151907
18
2.6
18
92
0
74
32
6
13
47
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
154620--154659
17
2.4
17
86
0
53
30
15
15
40
1.87
157450--157489
17
2.4
17
86
0
53
30
15
15
40
1.87
157545--157590
18
2.6
18
92
0
74
32
6
13
47
1.68
160298--160337
17
2.4
17
86
0
53
32
15
12
40
1.84
160344--160402
17
3.5
17
68
13
50
30
13
8
47
1.73
160393--160438
18
2.6
18
92
0
74
32
6
13
47
1.68
164339--164378
17
2.4
17
86
0
53
32
15
12
40
1.84
164434--164477
18
2.4
18
88
0
61
34
6
11
47
1.66
164683--164722
17
2.4
17
86
0
53
32
15
12
40
1.84
164778--164821
18
2.4
18
88
0
61
34
6
11
47
1.66
164320--165034
344
2.1
344
99
0
1412
31
14
13
41
1.84
166232--166273
22
1.9
22
90
9
68
14
11
4
69
1.34
172860--172890
11
2.8
11
95
0
53
22
9
3
64
1.38
175020--175059
17
2.4
17
86
0
53
32
15
12
40
1.84
175115--175160
18
2.6
18
92
0
74
32
6
13
47
1.68
176999--177057
22
2.7
22
84
5
66
79
13
5
1
0.97
181365--181391
10
2.7
10
100
0
54
85
14
0
0
0.61
184724--184772
12
4.1
13
77
15
52
14
16
2
67
1.33
185104--185143
21
1.9
21
94
0
71
80
7
12
0
0.91
185100--185157
28
2.1
28
83
6
73
81
8
10
0
0.89
185100--185150
21
2.4
21
73
3
57
84
5
9
0
0.78
185105--185150
10
4.5
10
81
5
56
84
4
10
0
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
185376--185762
207
1.9
208
88
3
593
38
15
17
28
1.90
189072--189110
10
3.8
10
80
6
51
84
2
12
0
0.72
189059--189110
11
4.7
11
76
7
52
84
5
9
0
0.77
195923--195955
8
4.1
8
88
11
50
84
0
3
12
0.72
200440--200490
20
2.5
20
93
0
84
25
5
33
35
1.80
205173--205212
17
2.4
17
86
0
53
32
15
12
40
1.84
205268--205306
18
2.2
18
95
0
69
35
5
15
43
1.69
212298--212353
13
4.7
11
74
21
51
0
19
1
78
0.84
212298--212353
18
3.1
18
82
17
71
0
19
1
78
0.84
220339--221936
800
2.0
798
99
0
3169
30
17
22
29
1.96
236116--236160
21
2.1
21
87
0
63
2
6
13
77
1.05
236135--236181
8
6.0
8
80
9
53
0
4
10
85
0.74
236124--236167
19
2.3
19
88
4
61
0
6
11
81
0.86
236124--236171
21
2.2
21
88
3
69
0
6
10
83
0.81
241918--241954
14
2.6
15
79
12
51
75
2
21
0
0.92
244803--244848
23
2.0
21
84
12
56
36
17
13
32
1.88
244817--244862
24
2.0
23
82
4
56
41
15
15
28
1.87
247095--247134
20
1.9
22
90
10
66
25
20
10
45
1.81
253629--253680
19
2.6
21
90
6
81
46
5
13
34
1.67

Tables:   1

The End!