genome.fa.s779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000779.1 Hibiscus syriacus cultivar Beakdansim tig00001514_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115038

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165--1197	2	16.5	2	100	0	66	48	0	0	51	1.00
1841--1951	36	3.1	36	89	7	179	38	37	10	12	1.78
1839--1955	37	3.2	37	90	7	193	38	38	11	11	1.78
2590--2620	2	15.5	2	100	0	62	48	0	0	51	1.00
5447--5496	23	2.2	23	81	0	55	12	24	12	52	1.72
8949--8984	19	1.9	18	94	5	63	33	2	0	63	1.08
10116--10162	16	2.9	16	100	0	94	44	19	10	25	1.82
10685--10741	30	1.9	30	92	0	96	38	8	3	49	1.51
10755--10810	26	2.2	26	78	6	62	37	7	0	55	1.27
10827--10937	30	3.7	30	79	1	105	42	6	0	51	1.27
11004--11278	30	9.2	29	74	9	178	52	0	7	39	1.35
11011--11178	58	2.8	58	77	17	150	50	0	7	42	1.29
11026--11257	60	3.9	60	77	7	206	52	0	8	38	1.37
16555--16591	18	2.1	18	89	0	56	43	5	10	40	1.63
18989--19023	17	2.1	17	100	0	70	37	5	22	34	1.78
20375--20476	34	2.9	36	89	5	163	44	13	13	28	1.82
20866--20904	16	2.3	18	83	16	57	25	5	2	66	1.25
24117--24185	8	8.5	8	75	13	52	81	5	11	1	0.93
24117--24187	20	3.3	21	80	7	72	78	5	14	1	0.99
24801--24851	22	2.3	22	93	0	84	35	25	11	27	1.91
25720--26048	36	9.3	35	75	12	226	26	19	14	40	1.89
25768--26048	72	4.0	71	76	10	308	25	19	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25787--26111	138	2.4	137	82	4	420	27	20	12	40	1.88
26816--27749	105	9.0	105	92	2	1443	33	26	17	22	1.96
26821--27749	312	3.0	312	92	2	1399	33	26	17	22	1.96
28285--28386	34	2.9	36	89	5	163	44	13	13	28	1.82
28778--28813	18	2.1	18	89	5	56	25	5	2	66	1.27
28823--28947	49	2.6	49	81	7	123	35	6	0	58	1.24
30447--30566	35	3.3	36	89	5	181	43	20	5	30	1.73
30498--30558	21	3.2	21	65	29	64	42	21	4	31	1.74
30501--30628	35	3.7	33	85	10	150	38	19	8	33	1.82
30536--30628	35	2.7	34	93	5	159	35	19	9	35	1.85
30447--30594	72	2.1	72	81	9	180	41	20	6	32	1.77
35106--35259	35	4.3	36	86	6	183	41	19	6	32	1.77
35157--35217	21	3.2	21	65	29	64	42	21	4	31	1.74
35195--35286	34	2.7	34	96	1	166	36	18	8	35	1.82
40898--40940	13	3.1	13	78	18	50	16	25	18	39	1.91
41792--41864	27	2.7	27	82	2	74	45	21	10	21	1.83
42947--43068	32	3.8	32	80	4	113	22	27	24	26	2.00
45349--45405	30	2.0	28	89	6	87	56	0	0	43	0.99
45348--45396	15	3.4	14	75	10	53	59	0	0	40	0.98
45459--45582	27	4.9	25	73	15	78	50	3	0	45	1.23
45516--45582	22	3.1	22	72	8	57	50	1	0	47	1.10
46754--46784	16	1.9	16	93	0	53	51	22	6	19	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46994--47042	14	3.5	14	78	10	64	12	6	20	61	1.52
46989--47043	28	2.0	28	100	0	110	10	5	21	61	1.49
47272--47312	20	2.0	20	85	0	55	12	17	14	56	1.68
47316--47350	14	2.5	14	90	0	52	8	8	20	62	1.49
51034--51103	32	2.2	32	84	2	88	30	17	14	38	1.89
51034--51094	16	3.8	16	86	0	77	29	16	14	39	1.88
52701--52759	29	2.0	29	100	0	118	23	13	13	49	1.78
57395--57453	29	2.0	29	100	0	118	23	13	13	49	1.78
62735--62780	16	2.9	16	75	15	51	45	0	2	52	1.13
63249--63443	59	3.3	59	84	2	268	32	23	15	28	1.95
63584--63630	24	2.0	24	82	0	58	46	17	4	31	1.67
63593--63642	24	2.0	24	88	7	73	50	12	4	34	1.58
65286--65335	20	2.4	21	80	12	59	48	4	0	48	1.20
65722--65774	20	2.7	20	94	2	90	30	32	16	20	1.95
74015--74052	20	1.9	20	88	0	58	31	31	15	21	1.94
74080--74177	19	4.7	19	77	17	106	29	28	18	23	1.98
74015--74222	65	3.2	64	74	15	196	29	26	15	27	1.96
77631--77764	60	2.2	60	80	5	144	37	14	18	29	1.91
78710--78798	46	2.0	46	88	2	135	39	8	6	44	1.62
78714--78809	46	2.1	45	80	3	104	42	7	5	44	1.54
79470--79503	17	2.1	17	88	5	52	55	0	0	44	0.99
80198--80243	21	2.2	21	96	0	83	17	10	6	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80233--80295	10	6.0	10	74	9	54	20	7	4	66	1.36
80238--80295	21	2.8	21	74	7	64	20	6	5	67	1.34
86559--86637	39	2.0	39	95	0	140	30	11	20	37	1.88
90526--90575	24	2.1	24	92	0	82	22	2	8	68	1.26
112007--112061	28	1.9	29	82	10	69	47	23	5	23	1.72
112523--112556	9	3.7	9	92	4	50	50	14	8	26	1.72
112562--112930	181	2.1	178	90	4	580	45	8	4	41	1.55

Tables:   1

The End!