Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007790.1 Hibiscus syriacus cultivar Beakdansim tig00110076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2956777
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 11
Found at i:498711 original size:53 final size:53
Alignment explanation
Indices: 498611--499179 Score: 670
Period size: 53 Copynumber: 10.6 Consensus size: 53
498601 AGAATCACAC
* ** **
498611 CAGAAGATTGTTCGAGTTCTACTCCCTCAAGCAAGACTGAGTAAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * *
498664 CAAAAGATTGTTCGAGTTCTACTCCCTAAAGAAATAGGGAGCGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * **
498717 CATAAGATTATTCGAGTTCTACTCCTTGAAGCAAGAGGGAGCAAACCCACAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
*
498770 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCATAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * **
498823 CTGAAGATTGTTCAAGTTCTACTCCCTGAAGCAAGAGGAAGCAAACCAATAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * ** *
498876 CAGAAGATTGTTTGAGTTCTACTCCTTGAAACTAGAGGGAGTAAACCTGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * *
498929 AAGAAGATTGTTCGAGTTCTACTCCCTAAAGAAAGAGGGAGCGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
*
498982 CAGAAGATTGTTCGAGTTCGAGTTCTACTCCATGAAGCAAGAGGGAGCGAACCCGTAGG
1 CAGAAGA---TT---GTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * *
499041 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCTAACCCATAGA
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * * * *
499094 CTGAAGACTGTTCAAGTTCTATTCCTTGAAGCAAGAGGAAGTGAACCCGTAGG
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * *
499147 CAGAAGATTGTTCAATTTCTACTCACTGAAGCA
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCA
499180 TGTAGGCTGA
Statistics
Matches: 439, Mismatches: 71, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
53 387 0.88
56 4 0.01
59 48 0.11
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (53 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
Found at i:498777 original size:106 final size:106
Alignment explanation
Indices: 498611--499287 Score: 716
Period size: 106 Copynumber: 6.5 Consensus size: 106
498601 AGAATCACAC
* ** * * *
498611 CAGAAGATTGTTCGAGTTCTACTCCCTCAAGCAAGACTGAGTAAACCCGTAGGCAAAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGATTGTT
* * *
498676 CGAGTTCTACTCCCTAAAGAAATAGGGAGCGAACCCGTAGG
66 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * *
498717 CATAAGATTATTCGAGTTCTACTCCTTGAAGCAAGAGGGAGCAAACCCACAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGATTGTT
*
498782 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCATAGG
66 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * *
498823 CTGAAGATTGTTCAAGTTCTACTCCCTGAAGCAAGAGGAAGCAAACCAATAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGATTGTT
* * * * ** *
498888 TGAGTTCTACTCCTTGAAACTAGAGGGAGTAAACCTGTAGG
66 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * *
498929 AAGAAGATTGTTCGAGTTCTACTCCCTAAAGAAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGA---TT
*
498994 CGAGTTCGAGTTCTACTCCATGAAGCAAGAGGGAGCGAACCCGTAGG
63 ---GTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * *
499041 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCTAACCCATAGACTGAAGACTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGATTGTT
* * * * *
499106 CAAGTTCTATTCCTTGAAGCAAGAGGAAGTGAACCCGTAGG
66 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * * * *
499147 CAGAAGATTGTTCAATTTCTACTCACTGAAGC---A---TG--------TAGGCTGAAGATTTTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGATTGTT
* * *
499198 CGAGTTCTACTCCCTGAAGCAAGAGGGAGTGAACTCGTACG
66 CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
* * * *
499239 CAGAAGATTGTTTGAGTTGTTACTCCCTGAAGCAAGAAGGAGCGAACCC
1 CAGAAGATTGTTCGAGTT-CTACTCCCTGAAGCAAGAGGGAGCAAACCC
499288 GCTGGTCCAA
Statistics
Matches: 473, Mismatches: 78, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
92 63 0.13
93 12 0.03
96 1 0.00
99 1 0.00
100 1 0.00
103 1 0.00
106 301 0.64
109 3 0.01
112 90 0.19
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (106 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCAAACCCATAGGCAGAAGATTGTT
CGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGG
Found at i:498900 original size:159 final size:159
Alignment explanation
Indices: 498611--499288 Score: 718
Period size: 159 Copynumber: 4.3 Consensus size: 159
498601 AGAATCACAC
* ** ** *
498611 CAGAAGATTGTTCGAGTTCTACTCCCTCAAGCAAGACTGAGTAAACCCGTAGGCAAAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
* * * * * *
498676 CGAGTTCTACTCCCTAAAGAAATAGGGAGCGAACCCGTAGGCATAAGATTATTCGAGTTCTACTC
66 CAAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTTCGAGTTCTACTC
*
498741 CTTGAAGCAAGAGGGAGCAAACCCACAGG
131 CTTGAAGCAAGAGGGAGCAAACCCATAGG
* *
498770 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCATAGGCTGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
* * ** *
498835 CAAGTTCTACTCCCTGAAGCAAGAGGAAGCAAACCAATAGGCAGAAGATTGTTTGAGTTCTACTC
66 CAAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTTCGAGTTCTACTC
* * * **
498900 CTTGAAACTAGAGGGAGTAAACCTGTAGG
131 CTTGAAGCAAGAGGGAGCAAACCCATAGG
* * *
498929 AAGAAGATTGTTCGAGTTCTACTCCCTAAAGAAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
*
498994 CGAGTTCGAGTTCTACTCCATGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTTCGAGTT
66 C-A-----AGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTTCGAGTT
* * *
499059 CTACTCCCTGAAGCAAGAGGGAGCTAACCCATAGA
125 CTACTCCTTGAAGCAAGAGGGAGCAAACCCATAGG
* * * * * * *
499094 CTGAAGACTGTTCAAGTTCTATTCCTTGAAGCAAGAGGAAGTGAACCCGTAGGCAGAAGATTGTT
1 CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
* * * * *
499159 CAATTTCTACT--C---A-C-TGA---AGC--A--TGTAGGCTGAAGATTTTTCGAGTTCTACTC
66 CAAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTTCGAGTTCTACTC
* ** * * *
499210 CCTGAAGCAAGAGGGAGTGAACTCGTACG
131 CTTGAAGCAAGAGGGAGCAAACCCATAGG
* * *
499239 CAGAAGATTGTTTGAGTTGTTACTCCCTGAAGCAAGAAGGAGCGAACCCG
1 CAGAAGATTGTTCGAGTT-CTACTCCCTGAAGCAAGAGGGAGCGAACCCG
499289 CTGGTCCAAG
Statistics
Matches: 436, Mismatches: 76, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
145 64 0.15
146 25 0.06
147 1 0.00
149 3 0.01
152 2 0.00
153 1 0.00
154 1 0.00
159 203 0.47
160 1 0.00
164 1 0.00
165 134 0.31
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (159 bp):
CAGAAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTT
CAAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAGAAGATTGTTCGAGTTCTACTC
CTTGAAGCAAGAGGGAGCAAACCCATAGG
Found at i:499206 original size:39 final size:39
Alignment explanation
Indices: 499142--499218 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
499132 AAGTGAACCC
*
499142 GTAGGCAGAAGATTGTTCAATTTCTACTCACTGAAGCAT
1 GTAGGCAGAAGATTGTTCAAGTTCTACTCACTGAAGCAT
* * * *
499181 GTAGGCTGAAGATTTTTCGAGTTCTACTCCCTGAAGCA
1 GTAGGCAGAAGATTGTTCAAGTTCTACTCACTGAAGCA
499219 AGAGGGAGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (39 bp):
GTAGGCAGAAGATTGTTCAAGTTCTACTCACTGAAGCAT
Found at i:499479 original size:3 final size:3
Alignment explanation
Indices: 499461--499525 Score: 96
Period size: 3 Copynumber: 21.7 Consensus size: 3
499451 GGGTTATAAA
* *
499461 TAT TA- TAT TAAT TAT TAT TAT TAT AAA TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
499506 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
499526 CAAATTACAT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.04
3 51 0.91
4 3 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:500778 original size:18 final size:18
Alignment explanation
Indices: 500755--500793 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
500745 AGTCACCGTA
500755 TTTGTTGGGGTAAATTAG
1 TTTGTTGGGGTAAATTAG
500773 TTTGTTGGGGTAAATTAG
1 TTTGTTGGGGTAAATTAG
500791 TTT
1 TTT
500794 TAGGTCCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.49
Consensus pattern (18 bp):
TTTGTTGGGGTAAATTAG
Found at i:504213 original size:3 final size:3
Alignment explanation
Indices: 504207--504266 Score: 75
Period size: 3 Copynumber: 20.0 Consensus size: 3
504197 TTATTTTTTT
* * * * *
504207 TAA TAA TAA TAA TTA TAA TAA TAA TAA TTA TTA TTA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
504255 TAA TAA TAA TAA
1 TAA TAA TAA TAA
504267 AATGAGTAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:504578 original size:33 final size:35
Alignment explanation
Indices: 504513--504578 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 35
504503 TTGAATAAGC
*
504513 TCTTCTCATTATGAACTTCTTCTTCTTCAAATGAGT
1 TCTTCTCATTATGAACTTC-TCTTCTGCAAATGAGT
*
504549 TCTTCTCATTATGAAC-TC-CTTCTGGAAATG
1 TCTTCTCATTATGAACTTCTCTTCTGCAAATG
504579 CTGATGATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 10 0.36
35 2 0.07
36 16 0.57
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.44
Consensus pattern (35 bp):
TCTTCTCATTATGAACTTCTCTTCTGCAAATGAGT
Found at i:504633 original size:120 final size:121
Alignment explanation
Indices: 504477--504707 Score: 326
Period size: 124 Copynumber: 1.9 Consensus size: 121
504467 GACCTATTTC
* * *
504477 CTTTTGTGATAGAGTCATTCCAAAGGTTGAATAAGCTCTTCTCATTATGAAC-TTCTTC-TTCTT
1 CTTTTGTGATAGAGTCATTCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTTCTTCTTTCTT
*
504540 CAAATGAGTTCTTCTCATTATGAACTC-CTTCTGGAAATGCTGATGATGATATATCT
66 CAAATGAGTTCTTCTCATTATGAACTCTC-TCTGGAAAAGCTGATGATGATATATCT
*
504596 CTTTCTGTGATAGAGTC-TTGCAAAAGGTCGAACAAGCTCTTCTCTTTATGAACTTATTCTTCTT
1 CTTT-TGTGATAGAGTCATT-CAAAAGGTCGAACAAGCTCTTCTCATTATGAAC-T-TTCTTCTT
* *
504660 TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGAT
62 TCTTCAAATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGAT
504708 CCATCAAGTG
Statistics
Matches: 98, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
119 6 0.06
120 41 0.42
123 6 0.06
124 44 0.45
125 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (121 bp):
CTTTTGTGATAGAGTCATTCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTTCTTCTTTCTT
CAAATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATGATGATATATCT
Found at i:504758 original size:113 final size:113
Alignment explanation
Indices: 504615--505291 Score: 815
Period size: 113 Copynumber: 6.0 Consensus size: 113
504605 ATAGAGTCTT
* * ** * *
504615 GCAAAAGGTCGAACAAGCTCTTCTCTTTATGAACTTATTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
*** * **
504680 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTCAA
66 ATTATGAACTTGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * * *
504728 TCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTATTCTTCATTCTTTAGATGAGTTCTTCTC
1 GCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
*** * * * * * * **
504793 ATTATGAACTTTCTCTGTAAAAGTTGATCTATTAAGTGATGAATTCAA
66 ATTATGAACTTGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * *
504841 GC-AAAAGTTGAACAAGTTCTTCTTATTATGAACTTATTCTTCCTTCTTCAGATGAATTCTTCTC
1 GCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
** * *
504905 ATTATGAACTAT-TTCTGGAAAAGCTAATCCATCAAATGATGAATTTGA
66 ATTATGAACT-TGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * *
504953 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTT
1 GCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * *
505018 ATTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGACGGATTTGA
66 ATTATGAACTTGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
*
505066 GC-AAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 GCAAAAAG-TTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCT
*
505130 CATTATGAACTAGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
65 CATTATGAACTTGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
* * * * * **
505179 GCAAAAGGTT-AAAAAATTCATCTCATTATGAATTTCTTCTTCCTTC-AAATGATGAGTTCTTCT
1 GCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCA-GATGAGTTCTTCT
* *
505242 CATTATGAACTCGAACTGGAAAATGCTAATCCATCAAATGATGGATTTGA
65 CATTATGAACTTGAACTGGAAAA-GCTGATCCATCAAATGATGGATTTGA
505292 ATCTTTGCTA
Statistics
Matches: 503, Mismatches: 54, Indels: 14
0.88 0.09 0.02
Matches are distributed among these distances:
111 1 0.00
112 169 0.34
113 329 0.65
114 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (113 bp):
GCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGA
Found at i:504912 original size:225 final size:224
Alignment explanation
Indices: 504615--505278 Score: 875
Period size: 225 Copynumber: 2.9 Consensus size: 224
504605 ATAGAGTCTT
* * *
504615 GCAAAAGGTCGAACAAGCTCTTCTCT-TTATGAACTTATTCTTCTTTCTTCAGATGAGTTCTTCT
1 GCAAAA-GTTGAACAAGTTCTTCT-TATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCT
* ** * *
504679 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTCAATCAAAAAGTTGAACAA
64 CATTATGAACTTT-TCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAA
* * * * ****
504744 GTTCTTCTCATTATGAACTTATTCTTCATTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCT
128 ATTCTTCTCATTATGAACTTCTTCTTCCTTCTTAAGATGAGTTCTTCTCATTATGAACTCGAACT
* * * *
504809 GTAAAAGTTGATCTATTAAGTGATGAATTCAA
193 GGAAAAGTTGATCCATCAAGTGACGAATTCAA
*
504841 GCAAAAGTTGAACAAGTTCTTCTTATTATGAACTTATTCTTCCTTCTTCAGATGAATTCTTCTCA
1 GCAAAAGTTGAACAAGTTCTTCTTATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
504906 TTATGAACTATTTCTGGAAAAGCTAATCCATCAAATGATGAATTTGAGCAAAAGGTTGAACAAAT
66 TTATGAACT-TTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAAT
* *
504971 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTCGAACTGG
130 TCTTCTCATTATGAACTTCTTCTTCCTTCTTAAGATGAGTTCTTCTCATTATGAACTCGAACTGG
* **
505036 AAAAGTTGATCCATCAAGTGACGGATTTGA
195 AAAAGTTGATCCATCAAGTGACGAATTCAA
* * *
505066 GCAAAAGATTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAG-TTGAACAAGTTCTTCTTATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
*** *
505131 ATTATGAACTAGAACTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTT-AAAAAA
65 ATTATGAACT-TTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
* * *
505195 TTCATCTCATTATGAATTTCTTCTTCCTTC-AAATGATGAGTTCTTCTCATTATGAACTCGAACT
129 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTAA-GATGAGTTCTTCTCATTATGAACTCGAACT
* *
505259 GGAAAATGCTAATCCATCAA
193 GGAAAA-GTTGATCCATCAA
505279 ATGATGGATT
Statistics
Matches: 389, Mismatches: 44, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
224 2 0.01
225 262 0.67
226 125 0.32
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (224 bp):
GCAAAAGTTGAACAAGTTCTTCTTATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATT
CTTCTCATTATGAACTTCTTCTTCCTTCTTAAGATGAGTTCTTCTCATTATGAACTCGAACTGGA
AAAGTTGATCCATCAAGTGACGAATTCAA
Found at i:505241 original size:338 final size:339
Alignment explanation
Indices: 504615--505291 Score: 885
Period size: 338 Copynumber: 2.0 Consensus size: 339
504605 ATAGAGTCTT
* * *
504615 GCAAAAGGTCGAACAAGCTCTTCTCTTTATGAACTTATTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTCGAACAAACTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
**** * * *
504680 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTCAATCAAAAAGTTGAACAAG
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGACGGATTCAAGCAAAAAGTTGAACAAA
* ****
504745 TTCTTCTCATTATGAACTTATTCTTCATTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTG
131 TTCTTCTCATTATGAACTTATTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTAGAACTG
* * * * * * * * *
504810 TAAAAGTTGATCTATTAAGTGATGAATTCAAGCAAAAGTTGAACAAGTTCTTCTTATTATGAACT
196 GAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAGTTGAAAAAATTCATCTCATTATGAACT
** ***
504875 TATTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTATTTCTGGAAAA-GCTAATCCATCA
261 TATTCTTCCTTCTAAAGATGAATTCTTCTCATTATGAACTAGAACTGGAAAATGCTAATCCATCA
504939 AATGATGAATTTGA
326 AATGATGAATTTGA
* * * *
504953 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTCGAACAAACTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
* **
505018 ATTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGACGGATTTGAGC-AAAAGATTGAACAA
66 ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGACGGATTCAAGCAAAAAG-TTGAACAA
* *
505082 ATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTAGAACT
130 ATTCTTCTCATTATGAACTTATTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTAGAACT
* **
505147 GGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTT-AAAAAATTCATCTCATTATGAA
195 GGAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAA-GTTGAAAAAATTCATCTCATTATGAA
* * * *
505211 TTTCTTCTTCCTTC-AAATGATGAGTTCTTCTCATTATGAACTCGAACTGGAAAATGCTAATCCA
259 CTTATTCTTCCTTCTAAA-GATGAATTCTTCTCATTATGAACTAGAACTGGAAAATGCTAATCCA
*
505275 TCAAATGATGGATTTGA
323 TCAAATGATGAATTTGA
505292 ATCTTTGCTA
Statistics
Matches: 289, Mismatches: 46, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
337 6 0.02
338 255 0.88
339 28 0.10
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (339 bp):
GCAAAAGGTCGAACAAACTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGACGGATTCAAGCAAAAAGTTGAACAAA
TTCTTCTCATTATGAACTTATTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTAGAACTG
GAAAAGCTGATCCATCAAATGATGAATTCAAGCAAAAGTTGAAAAAATTCATCTCATTATGAACT
TATTCTTCCTTCTAAAGATGAATTCTTCTCATTATGAACTAGAACTGGAAAATGCTAATCCATCA
AATGATGAATTTGA
Found at i:506110 original size:94 final size:87
Alignment explanation
Indices: 506003--506417 Score: 488
Period size: 94 Copynumber: 4.7 Consensus size: 87
505993 GGTTCTGGGT
* * * * *
506003 TTCATATCAAACCAAATCAGAGAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTC
1 TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
506068 TTCCAAATTCAATAAATGGTTCTTTAGGG
66 TTCCAAATTCAAT-AAT-G---TTT--GG
*
506097 TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAAGCACATTCATC
1 TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
* * *
506162 TTTCAAATTTAATGATTGGTTTTTTAGGG
66 TTCCAAATTCAAT-AAT-G---TTT--GG
* *
506191 TTCATACCAAACCAGATCAGATAACTGAAAGAACACTTCCAGAAGATGCTATTAGCACATTGC-T
1 TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATT-CAT
506255 CTTCCAAATTCAATAA---TTGG
65 CTTCCAAATTCAATAATGTTTGG
* *
506275 TT-TTACCAAACCAGATCAGATAATTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
1 TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
* *
506339 TTTCAAATTC---AATGATTGG
66 TTCCAAATTCAATAATGTTTGG
*
506358 TT-TTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATT
1 TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATT
506418 GCATTTGTTC
Statistics
Matches: 295, Mismatches: 21, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
80 2 0.01
82 1 0.00
83 128 0.43
84 4 0.01
86 2 0.01
93 1 0.00
94 156 0.53
95 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (87 bp):
TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATC
TTCCAAATTCAATAATGTTTGG
Found at i:506306 original size:177 final size:166
Alignment explanation
Indices: 506101--506419 Score: 494
Period size: 177 Copynumber: 1.9 Consensus size: 166
506091 TTAGGGTTCA
506101 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAAGCACATTCATCTTTC
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAAGCACATTCATCTTTC
* *
506166 AAATTTAATGATTGGTTTTTTAGGGTTCATACCAAACCAGATCAGATAACTGAAAGAACACTTCC
66 AAATTCAATGATTGG-----T----TT--TACCAAACCAGATCAGATAACTCAAAGAACACTTCC
*
506231 AGAAGATGCTATTAGCACATTGCTCTTCCAAATTCAATAATTGGTTT
120 AGAAGATGCTATGAGCACATTGCTCTTCCAAATTCAATAATTGGTTT
* *
506278 TACCAAACCAGATCAGATAATTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTC
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAAGCACATTCATCTTTC
506343 AAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA
66 AAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA
506408 TGAGCACATTGC
131 TGAGCACATTGC
506420 ATTTGTTCCA
Statistics
Matches: 137, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
166 57 0.42
168 2 0.01
172 1 0.01
177 77 0.56
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (166 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATAAGCACATTCATCTTTC
AAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA
TGAGCACATTGCTCTTCCAAATTCAATAATTGGTTT
Found at i:506334 original size:83 final size:84
Alignment explanation
Indices: 506195--506421 Score: 395
Period size: 83 Copynumber: 2.7 Consensus size: 84
506185 TTAGGGTTCA
* *
506195 TACCAAACCAGATCAGATAACTGAAAGAACACTTCCAGAAGATGCTATTAGCACATTGC-TCTTC
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTGCATCTTC
506259 CAAATTCAATAATTGGTTT
66 CAAATTCAATAATTGGTTT
* *
506278 TACCAAACCAGATCAGATAATTCAAAGAACACTTCCAGAAGATGCTATGAGCACATT-CATCTTT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTGCATCTTC
*
506342 CAAATTCAATGATTGGTTT
66 CAAATTCAATAATTGGTTT
506361 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTGCAT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTGCAT
506422 TTGTTCCAGT
Statistics
Matches: 136, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
82 1 0.01
83 132 0.97
84 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (84 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTGCATCTTC
CAAATTCAATAATTGGTTT
Found at i:507479 original size:9 final size:9
Alignment explanation
Indices: 507458--507529 Score: 75
Period size: 8 Copynumber: 8.6 Consensus size: 9
507448 CTTGACCCCC
507458 CTTTTTTCTT
1 CTTTTTTC-T
507468 CTTTTTTCT
1 CTTTTTTCT
507477 CTTTTTTC-
1 CTTTTTTCT
507485 CTTTTTT-T
1 CTTTTTTCT
*
507493 -TTCTTT-T
1 CTTTTTTCT
507500 CTTTTTTCT
1 CTTTTTTCT
*
507509 CTTTCTTCT
1 CTTTTTTCT
507518 -TTTTTTCT
1 CTTTTTTCT
507526 -TTTT
1 CTTTT
507530 CTTTTTCTCT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.11
8 23 0.42
9 18 0.33
10 8 0.15
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
CTTTTTTCT
Found at i:507506 original size:14 final size:14
Alignment explanation
Indices: 507487--507535 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
507477 CTTTTTTCCT
507487 TTTTTTTTCTTTTC
1 TTTTTTTTCTTTTC
*
507501 TTTTTTCTC-TTTC
1 TTTTTTTTCTTTTC
507514 TTCTTTTTTTCTTTTTC
1 -T-TTTTTTTC-TTTTC
507531 TTTTT
1 TTTTT
507536 CTCTTCAAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 4 0.14
14 9 0.31
15 11 0.38
16 1 0.03
17 4 0.14
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTCTTTTC
Found at i:507507 original size:32 final size:31
Alignment explanation
Indices: 507459--507540 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 31
507449 TTGACCCCCC
*
507459 TTTTTTC--TTCTTTTTTCTCTTTTTTCCTTT
1 TTTTTTCTTTTCTTTTTTCTCTTTCTT-CTTT
507489 TTTTTTCTTTTCTTTTTTCTCTTTCTTCTTT
1 TTTTTTCTTTTCTTTTTTCTCTTTCTTCTTT
*
507520 TTTTCT-TTTTC-TTTTTCTCTT
1 TTTTTTCTTTTCTTTTTTCTCTT
507541 CAAGCATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
29 10 0.21
30 12 0.25
31 9 0.19
32 17 0.35
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (31 bp):
TTTTTTCTTTTCTTTTTTCTCTTTCTTCTTT
Found at i:507512 original size:24 final size:23
Alignment explanation
Indices: 507462--507529 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 23
507452 ACCCCCCTTT
507462 TTTCTTCTTTTTTCTCTTTTTTCC
1 TTTCTTCTTTTTT-TCTTTTTTCC
*
507486 TTT-TTTTTTCTTTTCTTTTTTCTC
1 TTTCTTCTTT-TTTTCTTTTTTC-C
507510 TTTCTTCTTTTTTTCTTTTT
1 TTTCTTCTTTTTTTCTTTTT
507530 CTTTTTCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 14 0.36
24 20 0.51
25 5 0.13
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTCTTCTTTTTTTCTTTTTTCC
Found at i:507530 original size:23 final size:23
Alignment explanation
Indices: 507462--507537 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 23
507452 ACCCCCCTTT
507462 TTTCTTCTTTTTTCTCTTTTT-TCC
1 TTTCTTCTTTTTT-TCTTTTTCT-C
*
507486 TTT-TTTTTTCTTTTCTTTTTTCTC
1 TTTCTTCTTT-TTTTC-TTTTTCTC
*
507510 TTTCTTCTTTTTTTCTTTTTCTT
1 TTTCTTCTTTTTTTCTTTTTCTC
507533 TTTCT
1 TTTCT
507538 CTTCAAGCAT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 19 0.42
24 20 0.44
25 6 0.13
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTCTTCTTTTTTTCTTTTTCTC
Found at i:514743 original size:15 final size:15
Alignment explanation
Indices: 514720--514751 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
514710 TGAAATGAAT
514720 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
514735 AATGCATGTATGCAA
1 AATGAATGTATGCAA
514750 AA
1 AA
514752 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:517959 original size:28 final size:29
Alignment explanation
Indices: 517928--518000 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
517918 AAAATGAAAC
*
517928 ATATAAATATTATGAAAA-TAATAAGTAA
1 ATATAAATATTATGAAAAGAAATAAGTAA
* * *
517956 ATATAAAAATTTTGAAAAGAAATAATTAA
1 ATATAAATATTATGAAAAGAAATAAGTAA
*
517985 AAATTAAATA-TATGAA
1 ATA-TAAATATTATGAA
518001 CTTTTAATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
28 16 0.44
29 15 0.42
30 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.32
Consensus pattern (29 bp):
ATATAAATATTATGAAAAGAAATAAGTAA
Found at i:518678 original size:22 final size:23
Alignment explanation
Indices: 518638--518686 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
518628 TTTTCTTCGA
*
518638 TATTGAAAAATATTAAAATAATT
1 TATTGAAAAATATTAAAATAAAT
518661 TATTGAAAAA-A-TATAAATAAAT
1 TATTGAAAAATATTA-AAATAAAT
518683 TATT
1 TATT
518687 TATTATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 2 0.08
22 12 0.50
23 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
TATTGAAAAATATTAAAATAAAT
Found at i:520119 original size:3 final size:3
Alignment explanation
Indices: 520113--520169 Score: 69
Period size: 3 Copynumber: 19.0 Consensus size: 3
520103 TTATTTTTTT
* * * * *
520113 TAA TAA TAA TAA TTA TAA TAA TAA TAA TTA TTA TTA TAA TAC TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
520161 TAA TAA TAA
1 TAA TAA TAA
520170 AATGAGTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:520133 original size:15 final size:15
Alignment explanation
Indices: 520113--520169 Score: 78
Period size: 15 Copynumber: 3.8 Consensus size: 15
520103 TTATTTTTTT
520113 TAATAATAATAATTA
1 TAATAATAATAATTA
520128 TAATAATAATAATTA
1 TAATAATAATAATTA
* * * *
520143 TTATTATAATACTAA
1 TAATAATAATAATTA
520158 TAATAATAATAA
1 TAATAATAATAA
520170 AATGAGTAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:521593 original size:26 final size:26
Alignment explanation
Indices: 521564--521619 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
521554 ATTGTCCTTT
*
521564 GCTTCTCTAAAGGAAGTCTTCAATTA
1 GCTTCTCTAAAGGAAGTCTTCAATCA
*
521590 GCTTCTCTATAGGAAGTCTTCAATCA
1 GCTTCTCTAAAGGAAGTCTTCAATCA
521616 GCTT
1 GCTT
521620 TAGATTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (26 bp):
GCTTCTCTAAAGGAAGTCTTCAATCA
Found at i:525640 original size:15 final size:13
Alignment explanation
Indices: 525611--525663 Score: 65
Period size: 12 Copynumber: 4.1 Consensus size: 13
525601 ATCTATAAAT
*
525611 ATAATATTAAT-A
1 ATAATATAAATAA
525623 ATAATATAAATCCAA
1 ATAATATAAAT--AA
525638 ATAATATAAATAA
1 ATAATATAAATAA
525651 ATAA-ATAAATAA
1 ATAATATAAATAA
525663 A
1 A
525664 ACACCCTGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
12 19 0.51
13 6 0.16
15 12 0.32
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAATATAAATAA
Found at i:528450 original size:22 final size:22
Alignment explanation
Indices: 528425--528467 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
528415 AGTTTTCTTG
*
528425 GGATGAATTTGGACTTAATTTA
1 GGATGAATTTCGACTTAATTTA
*
528447 GGATGAATTTCGCCTTAATTT
1 GGATGAATTTCGACTTAATTT
528468 CGTCCAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (22 bp):
GGATGAATTTCGACTTAATTTA
Found at i:529168 original size:17 final size:17
Alignment explanation
Indices: 529143--529185 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
529133 TGAAACAATT
* *
529143 ATGAGCTAGTTTGATTG
1 ATGACCTAGTTTGATTA
529160 ATGACCTAGTTTGATTA
1 ATGACCTAGTTTGATTA
529177 ATGACCTAG
1 ATGACCTAG
529186 ATAAATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (17 bp):
ATGACCTAGTTTGATTA
Found at i:534503 original size:241 final size:241
Alignment explanation
Indices: 534165--534649 Score: 952
Period size: 241 Copynumber: 2.0 Consensus size: 241
534155 AGACGGTTCA
534165 AAACTTGAAGTCACATTGGGCAAGCAAATCCAAGCATAATTTCAAGTATTGGTGTTTAGGGGTGC
1 AAACTTGAAGTCACATTGGGCAAGCAAATCCAAGCATAATTTCAAGTATTGGTGTTTAGGGGTGC
534230 TTATCGAGCGAGTTGATCGGGAGTTAGATAATGTTCGACTTATACTCGTTAAAAAAGTTAGTTCC
66 TTATCGAGCGAGTTGATCGGGAGTTAGATAATGTTCGACTTATACTCGTTAAAAAAGTTAGTTCC
534295 TCGACTCAAATCAACTCATTGCTCGTTAAAATTTTGTTCTAATCGTGCTAGTTAAGAAAATTTAT
131 TCGACTCAAATCAACTCATTGCTCGTTAAAATTTTGTTCTAATCGTGCTAGTTAAGAAAATTTAT
*
534360 TGCTTGGCTCGTTTCTCGTCAAGCTCATTGCTCATTAAGCTCATCG
196 TGATTGGCTCGTTTCTCGTCAAGCTCATTGCTCATTAAGCTCATCG
534406 AAACTTGAAGTCACATTGGGCAAGCAAATCCAAGCATAATTTCAAGTATTGGTGTTTAGGGGTGC
1 AAACTTGAAGTCACATTGGGCAAGCAAATCCAAGCATAATTTCAAGTATTGGTGTTTAGGGGTGC
534471 TTATCGAGCGAGTTGATCGGGAGTTAGATAATGTTCGACTTATACTCGTTAAAAAAGTTAGTTCC
66 TTATCGAGCGAGTTGATCGGGAGTTAGATAATGTTCGACTTATACTCGTTAAAAAAGTTAGTTCC
*
534536 TCGACTCAACTCAACTCATTGCTCGTTAAAATTTTGTTCTAATCGTGCTAGTTAAGAAAATTTAT
131 TCGACTCAAATCAACTCATTGCTCGTTAAAATTTTGTTCTAATCGTGCTAGTTAAGAAAATTTAT
534601 TGATTGGCTCGTTTCTCGTCAAGCTCATTGCTCATTAAGCTCATCG
196 TGATTGGCTCGTTTCTCGTCAAGCTCATTGCTCATTAAGCTCATCG
534647 AAA
1 AAA
534650 TATTTTTATT
Statistics
Matches: 242, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
241 242 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (241 bp):
AAACTTGAAGTCACATTGGGCAAGCAAATCCAAGCATAATTTCAAGTATTGGTGTTTAGGGGTGC
TTATCGAGCGAGTTGATCGGGAGTTAGATAATGTTCGACTTATACTCGTTAAAAAAGTTAGTTCC
TCGACTCAAATCAACTCATTGCTCGTTAAAATTTTGTTCTAATCGTGCTAGTTAAGAAAATTTAT
TGATTGGCTCGTTTCTCGTCAAGCTCATTGCTCATTAAGCTCATCG
Found at i:543130 original size:65 final size:64
Alignment explanation
Indices: 542929--543136 Score: 185
Period size: 65 Copynumber: 3.2 Consensus size: 64
542919 TGCACTAAGA
* * *
542929 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAGT-TGCCTGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTC-AATTATACCTGAGTGCATCGATGCATGGTTG
* * * * *
542993 GTGCATCGATGCATCAAATACATGT-GATGTTTTC-ATAAAACTCTGAGTGCATCGATGCATAGT
1 GTGCATCGATGCATAAAATGCAT-TCGATG-TTTCAATTATAC-CTGAGTGCATCGATGCATGGT
543056 AT-
63 -TG
* * * *
543058 GTACATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCCATG-GTACATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA-TTATACC-TGAGTGCATCGATGCATGG-T
543121 TG
63 TG
*
543123 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
543137 CACTTTGAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 21
0.75 0.12 0.14
Matches are distributed among these distances:
63 4 0.03
64 44 0.38
65 66 0.57
66 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATTATACCTGAGTGCATCGATGCATGGTTG
Found at i:545819 original size:23 final size:22
Alignment explanation
Indices: 545790--545870 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 22
545780 ACATGGCCTT
545790 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * * *
545812 CGTGCATCGGTGTACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
545834 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
*
545856 GATGCATCAATGCAC
1 G-TGCATCGATGCAC
545871 TGTTAGGTGT
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 14 0.31
22 5 0.11
23 26 0.58
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:551236 original size:21 final size:21
Alignment explanation
Indices: 551210--551264 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
551200 GGAGCGTCAG
551210 TGCATCGATGCATACCCATGC
1 TGCATCGATGCATACCCATGC
551231 TGCATCGATGCATACCCATGC
1 TGCATCGATGCATACCCATGC
*
551252 TGCATCGGTGCAT
1 TGCATCGATGCAT
551265 CCAGTGTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (21 bp):
TGCATCGATGCATACCCATGC
Found at i:551371 original size:64 final size:65
Alignment explanation
Indices: 551303--551447 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 65
551293 TTGGACCCTT
* *
551303 AGTGCATCGGTGCACT-AAGAGTGCATCTATGCATAAAAT-CTATTCGATG-TTTCA-AAATAGC
1 AGTGCATCGATGCA-TGAAGAGTGCATCGATGCATAAAATGC-ATTCGATGTTTTCATAAA-AGC
551364 CTG
63 CTG
* * * * **
551367 AGTGCATCGATGTATGGATAGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATTCTG
1 AGTGCATCGATGCATGAAGAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAGCCTG
551432 AGTGCATCGATGCATG
1 AGTGCATCGATGCATG
551448 GATTGGTGCA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
63 1 0.01
64 39 0.57
65 25 0.37
66 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (65 bp):
AGTGCATCGATGCATGAAGAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAAGCCTG
Found at i:551449 original size:65 final size:65
Alignment explanation
Indices: 551322--551468 Score: 174
Period size: 65 Copynumber: 2.3 Consensus size: 65
551312 GTGCACTAAG
* * *
551322 AGTGCATCTATGCATAAAATCTATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGTATGGA-T
1 AGTGCATCGATGCATCAAATCTATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGATT
**
551386 AGTGCATCGATGCATCAAATGC-ATTCGATGTTTTCATAAA-ATTCTGAGTGCATCGATGCATGG
1 AGTGCATCGATGCATCAAAT-CTATTCGATG-TTTCA-AAATAGCCTGAGTGCATCGATGCATGG
551449 ATT
63 ATT
* * *
551452 GGTGCATTGGTGCATCA
1 AGTGCATCGATGCATCA
551469 CTCTAAAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
64 26 0.37
65 27 0.38
66 18 0.25
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (65 bp):
AGTGCATCGATGCATCAAATCTATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGATT
Found at i:563819 original size:23 final size:24
Alignment explanation
Indices: 563777--563821 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
563767 TCTTCCAGAT
*
563777 GATGTATAAAACATCTATGTACAC
1 GATGGATAAAACATCTATGTACAC
563801 GATGGATAAAA-ATCTATGTAC
1 GATGGATAAAACATCTATGTAC
563822 CATGTCATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (24 bp):
GATGGATAAAACATCTATGTACAC
Found at i:567382 original size:20 final size:19
Alignment explanation
Indices: 567359--567410 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
567349 AATAGGTGTG
*
567359 TATCGATACCAAGGGTTCAA
1 TATCGATACCAA-GGATCAA
* *
567379 TATCAATACTGAAGGATCAA
1 TATCGATAC-CAAGGATCAA
*
567399 TATCGGTACCAA
1 TATCGATACCAA
567411 TTAATAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (19 bp):
TATCGATACCAAGGATCAA
Found at i:589374 original size:21 final size:20
Alignment explanation
Indices: 589349--589387 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
589339 CGTCAAGGTC
*
589349 TTTGTTGAGGCCATGAAATCT
1 TTTGTCGAGGCCAT-AAATCT
*
589370 TTTGTCGATGCCATAAAT
1 TTTGTCGAGGCCATAAAT
589388 TCCTGTAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (20 bp):
TTTGTCGAGGCCATAAATCT
Found at i:599592 original size:54 final size:54
Alignment explanation
Indices: 599495--599997 Score: 483
Period size: 54 Copynumber: 9.3 Consensus size: 54
599485 TAAATCTTTA
* * * * *
599495 GGTTGCACA-TGTGGTGCCGATACGGTCATTCATAAGCTCATTATGAAATT-TGTG
1 GGTTGCACACT-TAGTGCCAATACGGTCGTTCATAAACTTATTATG-AATTATGTG
* * * * * * * * *
599549 GGTTGGAAACATATTGCCTATACGATCGTTTATAAAATTATTATGAATTTTGTG
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
* * * *
599603 TGTTGCACACTTAGTGTCAATACGGTTGTTCATAAACTTATTATGAATTATGTA
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
* * * * *
599657 CGTTGCACACTTAGTACCAATACGGTTGTTTATAAACTTATTATGAATTCTGTG
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
* * ** ***
599711 GGTTGCAAACTTAGTGTCAATACAATCGTTCATAAACTTATTATGAATTCCATG
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
* * * *
599765 GGTTGCACACTTAGTTCCAATACGGTCGATCATAAACTCATTATGAATTACGTG
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
* * *
599819 GGTTGCACACTTAGTGCCGATACGATAGTTCATAAACTTATTATGAATTATGTG
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
* * * *
599873 GGTTGCACACTTAGTGTCGATACGGTCGTTTATAAACATATTATGAATT-TCGTG
1 GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTAT-GTG
* * * * * * **
599927 GATTGTACACTTAGTG-TATATATGGTCATTCATAAACTTACTATGAATTCCGTG
1 GGTTGCACACTTAGTGCCA-ATACGGTCGTTCATAAACTTATTATGAATTATGTG
* *
599981 AGTTACACACTTAGTGC
1 GGTTGCACACTTAGTGC
599998 TGATAGTACA
Statistics
Matches: 367, Mismatches: 76, Indels: 11
0.81 0.17 0.02
Matches are distributed among these distances:
53 5 0.01
54 362 0.99
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTTGCACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTATGTG
Found at i:599996 original size:162 final size:160
Alignment explanation
Indices: 599508--600002 Score: 552
Period size: 162 Copynumber: 3.1 Consensus size: 160
599498 TGCACATGTG
* * * * * * *
599508 GTGCCGATACGGTCA-TTCATAAGCTCATTATGAAATTTGTGGGTTGGAAACATATTGCCTATAC
1 GTGCCGATACGGT-AGTTCATAAACTTATTATG-AATTTGTGGGTTGCAAACTTAGTGTCAATAC
* **
599572 GATCGTTTATAAA-ATTATTATGAATTTTGTGTGTTGCACACTTAGTGTCAATACGGTTGTTCAT
64 GATCGTTTATAAACA-TATTATGAATTTCGTG-GTTGCACACTTAGTGTCAATACGGTCATTCAT
*
599636 AAACTTATTATGAATTATGT-ACGTTGCACACTTA
127 AAACTTATTATGAATTACGTGA-GTTGCACACTTA
* * * * *
599670 GTACCAATACGGTTGTTTATAAACTTATTATGAATTCTGTGGGTTGCAAACTTAGTGTCAATACA
1 GTGCCGATACGGTAGTTCATAAACTTATTATGAATT-TGTGGGTTGCAAACTTAGTGTCAATACG
* * * *
599735 ATCGTTCATAAACTTATTATGAATTCCATGGGTTGCACACTTAGT-TCCAATACGGTCGA-TCAT
65 ATCGTTTATAAACATATTATGAATTTCGT-GGTTGCACACTTAGTGT-CAATACGGTC-ATTCAT
* *
599798 AAACTCATTATGAATTACGTGGGTTGCACACTTA
127 AAACTTATTATGAATTACGTGAGTTGCACACTTA
* * *
599832 GTGCCGATACGATAGTTCATAAACTTATTATGAATTATGTGGGTTGCACACTTAGTGTCGATACG
1 GTGCCGATACGGTAGTTCATAAACTTATTATGAATT-TGTGGGTTGCAAACTTAGTGTCAATACG
* * *
599897 GTCGTTTATAAACATATTATGAATTTCGTGGATTGTACACTTAGTGT-ATATATGGTCATTCATA
65 ATCGTTTATAAACATATTATGAATTTCGTGG-TTGCACACTTAGTGTCA-ATACGGTCATTCATA
* * *
599961 AACTTACTATGAATTCCGTGAGTTACACACTTA
128 AACTTATTATGAATTACGTGAGTTGCACACTTA
*
599994 GTGCTGATA
1 GTGCCGATA
600003 GTACACATTG
Statistics
Matches: 278, Mismatches: 44, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
161 9 0.03
162 267 0.96
163 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (160 bp):
GTGCCGATACGGTAGTTCATAAACTTATTATGAATTTGTGGGTTGCAAACTTAGTGTCAATACGA
TCGTTTATAAACATATTATGAATTTCGTGGTTGCACACTTAGTGTCAATACGGTCATTCATAAAC
TTATTATGAATTACGTGAGTTGCACACTTA
Found at i:600368 original size:22 final size:22
Alignment explanation
Indices: 600337--600379 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
600327 GTATCGGTAC
*
600337 CTATAGTATGGTATCGATACTT
1 CTATACTATGGTATCGATACTT
*
600359 CTATACTATGGTTTCGATACT
1 CTATACTATGGTATCGATACT
600380 CCTCTTAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (22 bp):
CTATACTATGGTATCGATACTT
Found at i:605252 original size:54 final size:54
Alignment explanation
Indices: 605189--605913 Score: 912
Period size: 54 Copynumber: 13.4 Consensus size: 54
605179 ATAATTTCTT
* * * * * * ** *
605189 TGGGGTGCACACGTAGTACCGATACGATCATTCATAAGCTCGTTATAAATTCCG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * * * *
605243 TGGGTTGCACACATAGTACTGATACGGTCGTTCGTAAACTTATTATGAATTCTG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * **
605297 TGGGTTGAACACTTAGTGCCAATACGGTCGTTCATAAACTTATTATGAATTTTG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * **
605351 TGGGTTGCACACTTAGTGCTGATATGGTCGTTCATAAACTTATTATGAATAACG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
**
605405 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTTTG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* *
605459 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCAAAAACTTATTATGAATTACG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
** * *
605513 TGGACTGCACACTTAGTGCCGATACAGTCGTTCATAAACTTATTATGAATTACG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * *
605567 TGGGCTGCACACTTAGTGCCGATACGGTCGTTCATATACTTATTATGAATTCTG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * *
605621 TGGGTCGCACACTTAGTGCCGATATGGTCGTTCATAAACTTATTATGAATTTCG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
** * * *
605675 TGGGTTGCACACTTAGTGTTGATACAGTCGTTCATAAACGTATTATGAATTCTG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * * * **
605729 TGGGTTGCACACTTAGTACCGATACGATCGTTCATAAACATGTTATGAATTATG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* ** * *
605783 TGGGATGCACACTTAGTGTTGATACAGTCGTTCATAAACTTATTACGAATTCCG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * * * *
605837 TGGATTGCACACTTAGTGCCGATACAGTTGTTCATAAA-TTATTATGAATTTCA
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* *
605890 TGGGTTGCACACTTAATGTCGATA
1 TGGGTTGCACACTTAGTGCCGATA
605914 GTACACATAA
Statistics
Matches: 585, Mismatches: 86, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
53 33 0.06
54 552 0.94
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (54 bp):
TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
Found at i:607240 original size:45 final size:45
Alignment explanation
Indices: 607184--607379 Score: 239
Period size: 45 Copynumber: 4.4 Consensus size: 45
607174 ATGCATTTTT
* * * * * *
607184 AACTATAGCATACTTTTCTGGTGATAGTGCACCTATTTGCATTCC
1 AACTATAGCATACTTTTCTGTTGATAATGCACCCATATACATTTC
* *
607229 AACTATAGCATACTTTTCTATTGATAATGTACCCATATACATTTC
1 AACTATAGCATACTTTTCTGTTGATAATGCACCCATATACATTTC
* * * *
607274 AATTATAGCATACTTCTCTCTTGATAATGTACCCATATACATTTC
1 AACTATAGCATACTTTTCTGTTGATAATGCACCCATATACATTTC
* * *
607319 AACTATATCTTACTTTTCTGTTGATAATGCACCCATATGCATTTC
1 AACTATAGCATACTTTTCTGTTGATAATGCACCCATATACATTTC
* *
607364 AACTATGGCATCCTTT
1 AACTATAGCATACTTT
607380 CATTTCGGTA
Statistics
Matches: 129, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 129 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.40
Consensus pattern (45 bp):
AACTATAGCATACTTTTCTGTTGATAATGCACCCATATACATTTC
Found at i:608044 original size:20 final size:21
Alignment explanation
Indices: 608005--608057 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
607995 GATGTTTGCT
*
608005 TGGTATCGATAC-ACTTACAA
1 TGGTATCGATACTACTCACAA
608025 TGGTATCGATACTAC-CACAA
1 TGGTATCGATACTACTCACAA
* *
608045 CGGTATCAATACT
1 TGGTATCGATACT
608058 GATTGAATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (21 bp):
TGGTATCGATACTACTCACAA
Found at i:615570 original size:22 final size:23
Alignment explanation
Indices: 615545--615587 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
615535 TTCTAACACA
*
615545 TACTCT-TTTATTTTTATTTTAG
1 TACTCTATTTATTTTAATTTTAG
*
615567 TACTTTATTTATTTTAATTTT
1 TACTCTATTTATTTTAATTTT
615588 TTCCTAGGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (23 bp):
TACTCTATTTATTTTAATTTTAG
Found at i:617791 original size:17 final size:17
Alignment explanation
Indices: 617769--617803 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
617759 TCGGATAGAA
617769 GCGAACCCAAAGGCAAG
1 GCGAACCCAAAGGCAAG
617786 GCGAACCCAAAGGCAAG
1 GCGAACCCAAAGGCAAG
617803 G
1 G
617804 AAAAAGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.29, G:0.31, T:0.00
Consensus pattern (17 bp):
GCGAACCCAAAGGCAAG
Found at i:621039 original size:22 final size:22
Alignment explanation
Indices: 621014--621061 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
621004 AGGAAATATA
621014 TGCCTTTGTTTCGACGTAGAAG
1 TGCCTTTGTTTCGACGTAGAAG
621036 TGCCTTTGTTTCGACGTAGAAG
1 TGCCTTTGTTTCGACGTAGAAG
621058 TGCC
1 TGCC
621062 AAGAGAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.17, C:0.21, G:0.27, T:0.35
Consensus pattern (22 bp):
TGCCTTTGTTTCGACGTAGAAG
Found at i:632995 original size:77 final size:79
Alignment explanation
Indices: 632901--633055 Score: 244
Period size: 77 Copynumber: 2.0 Consensus size: 79
632891 TTCGAATTAA
* *
632901 TTAAATTCTTATTTAATTAATT-CAAATTAAATATCCATT-AAAGACTTGTAATCCGAATTACAC
1 TTAAACTCTTATTTAATT-ATTCCAAATTAAATATCCATTAAAAGACTTGTAATCAGAATTACAC
632964 TC-TTTAATGTTTAT
65 TCTTTTAATGTTTAT
* *
632978 TTAAACTCTTATTTAATTATTCCAAATTAAATATCCATTAAAAGAGTTGTAATCAGAATTACATT
1 TTAAACTCTTATTTAATTATTCCAAATTAAATATCCATTAAAAGACTTGTAATCAGAATTACACT
633043 CTTTTAATGTTTA
66 CTTTTAATGTTTA
633056 CTTACTATAT
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
76 3 0.04
77 34 0.48
78 23 0.32
79 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (79 bp):
TTAAACTCTTATTTAATTATTCCAAATTAAATATCCATTAAAAGACTTGTAATCAGAATTACACT
CTTTTAATGTTTAT
Found at i:634609 original size:98 final size:98
Alignment explanation
Indices: 634440--634633 Score: 275
Period size: 98 Copynumber: 2.0 Consensus size: 98
634430 AAGCACCTAA
* *
634440 GTGCCACAATGACGTATAGGTACTGTAGTATATAGTGACACTACACTACCAATTCCAGAGTAGTA
1 GTGCCACAATAACGTATAGGTACTGTAGTATATAGTGACACTACACTAACAATTCCAGAGTAGTA
634505 ATTCATTATGAAAACCATCCTTGCACACAAAGT
66 ATTCATTATGAAAACCATCCTTGCACACAAAGT
* * * * * *
634538 GTGCCATAATAACGTATAGGTATTGTAGTATATA-TCGACACTATATTAACAATTCTATAGT-GA
1 GTGCCACAATAACGTATAGGTACTGTAGTATATAGT-GACACTACACTAACAATTCCAGAGTAG-
*
634601 TAATTCATTATGAATACCATCCTTGCACACAAA
64 TAATTCATTATGAAAACCATCCTTGCACACAAA
634634 ATGCACCCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
97 2 0.02
98 83 0.98
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (98 bp):
GTGCCACAATAACGTATAGGTACTGTAGTATATAGTGACACTACACTAACAATTCCAGAGTAGTA
ATTCATTATGAAAACCATCCTTGCACACAAAGT
Found at i:634790 original size:98 final size:98
Alignment explanation
Indices: 634655--634848 Score: 316
Period size: 98 Copynumber: 2.0 Consensus size: 98
634645 AAGCACATAA
634655 GTGCCACAATGACACATAGGTACTGTAGTATACAACGACACTATACTAACAATTCCGGAGTGATA
1 GTGCCACAATGACACATAGGTACTGTAGTATACAACGACACTATACTAACAATTCCGGAGTGATA
*
634720 ATTCATTATGAATACCATCCTTGCACACAAAGT
66 ATTCATTATAAATACCATCCTTGCACACAAAGT
* ** * * * *
634753 GTGCCATAATGACGTATATGTATTGTAGTATAGAACGACACTATACTAACAATTTCGGAGTGATA
1 GTGCCACAATGACACATAGGTACTGTAGTATACAACGACACTATACTAACAATTCCGGAGTGATA
634818 ATTCATTATAAATACCATCCTTGCACACAAA
66 ATTCATTATAAATACCATCCTTGCACACAAA
634849 TTGCATCCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (98 bp):
GTGCCACAATGACACATAGGTACTGTAGTATACAACGACACTATACTAACAATTCCGGAGTGATA
ATTCATTATAAATACCATCCTTGCACACAAAGT
Found at i:634797 original size:215 final size:215
Alignment explanation
Indices: 634426--635202 Score: 916
Period size: 215 Copynumber: 3.5 Consensus size: 215
634416 AGGTACCCAA
* * * ** * *
634426 CAATAAGCACCTAAGTGCCACAATGACGTATAGGTACTGTAGTATATAGTGACACTACACTACCA
1 CAATAAGCACATAAGTGCCACAATGACGCATAGGTACTGTAGTATACAACGACACTATACTAACA
* *
634491 ATTCCAGAGT-AGTAATTCATTATGAAAACCATCCTTGCACACAAAGTGTGCCATAATAACGTAT
66 ATTCCAGAGTGA-TAATTCATTATGAATACCATCCTTGCACACAAAGTGTGCCATAATGACGTAT
* * * * *
634555 AGGTATTGTAGTATATATCGACACTATATTAACAATTCTATAGTGATAATTCATTATGAATACCA
130 ATGTATTGTAGTATAGAACGACACTATACTAACAATTCTAGAGTGATAATTCATTATGAATACCA
634620 TCCTTGCACACAAAATGCACC
195 TCCTTGCACACAAAATGCACC
*
634641 CAATAAGCACATAAGTGCCACAATGACACATAGGTACTGTAGTATACAACGACACTATACTAACA
1 CAATAAGCACATAAGTGCCACAATGACGCATAGGTACTGTAGTATACAACGACACTATACTAACA
*
634706 ATTCCGGAGTGATAATTCATTATGAATACCATCCTTGCACACAAAGTGTGCCATAATGACGTATA
66 ATTCCAGAGTGATAATTCATTATGAATACCATCCTTGCACACAAAGTGTGCCATAATGACGTATA
* *
634771 TGTATTGTAGTATAGAACGACACTATACTAACAATT-TCGGAGTGATAATTCATTATAAATACCA
131 TGTATTGTAGTATAGAACGACACTATACTAACAATTCT-AGAGTGATAATTCATTATGAATACCA
* *
634835 TCCTTGCACACAAATTGCATC
195 TCCTTGCACACAAAATGCACC
* ** *
634856 CAATAAGTACATAAGTGCCACAATGACGCATAGGTGTTGTAGTATACAACGACACTAGACTAACA
1 CAATAAGCACATAAGTGCCACAATGACGCATAGGTACTGTAGTATACAACGACACTATACTAACA
* *** *
634921 ATTCTAGAGTG-TAATTCATTATGAATATTTTCCTTGCACACAAAGTGCAATCAATAAGCATATA
66 ATTCCAGAGTGATAATTCATTATGAATACCATCCTTGCACACAAAGTG-------T--GC-CAT-
* * * * *
634985 AATGCCACAT-TGATGTATAGGTACTGTAGTATGCAACAACACTATACTAACAATTCAAGAGTGG
120 AATG--ACGTAT-ATGTAT-TGTA--GTA-TA-G-AACGACACTATACTAACAATTCTAGAGTGA
* * *
635049 TAATTCATTATGAATACTATACTTGCACACAAAGTGCACC
176 TAATTCATTATGAATACCATCCTTGCACACAAAATGCACC
* * * *
635089 CAATAAGCTCATAAGTGCCACAATGATGTATAGGTACTGTAGTATACGACGACACTATACTAACA
1 CAATAAGCACATAAGTGCCACAATGACGCATAGGTACTGTAGTATACAACGACACTATACTAACA
* * *
635154 ATTTC-GTAGTGGTAATTCATTATGAATACCATCCTTGCACACAATGTGT
66 ATTCCAG-AGTGATAATTCATTATGAATACCATCCTTGCACACAAAGTGT
635203 ACCCAGTAAG
Statistics
Matches: 481, Mismatches: 56, Indels: 38
0.84 0.10 0.07
Matches are distributed among these distances:
214 34 0.07
215 260 0.54
216 1 0.00
221 1 0.00
223 2 0.00
224 2 0.00
225 4 0.01
226 1 0.00
227 10 0.02
228 3 0.01
230 3 0.01
231 2 0.00
232 2 0.00
233 124 0.26
234 32 0.07
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (215 bp):
CAATAAGCACATAAGTGCCACAATGACGCATAGGTACTGTAGTATACAACGACACTATACTAACA
ATTCCAGAGTGATAATTCATTATGAATACCATCCTTGCACACAAAGTGTGCCATAATGACGTATA
TGTATTGTAGTATAGAACGACACTATACTAACAATTCTAGAGTGATAATTCATTATGAATACCAT
CCTTGCACACAAAATGCACC
Found at i:634856 original size:117 final size:116
Alignment explanation
Indices: 634753--635227 Score: 505
Period size: 117 Copynumber: 4.1 Consensus size: 116
634743 CACACAAAGT
* * * * *
634753 GTGCCATAATGACGTATATGTATTGTAGTATAGAACGACACTATACTAACAATTTC-GGAGTGAT
1 GTGCCACAATGACGTATAGGTACTGTAGTATAGAACGACACTATACTAACAA-TTCAAGAGTGGT
* * * *
634817 AATTCATTATAAATACCATCCTTGCACACAAATTGCATCCAATAAGTACATAA
65 AATTCATTATGAATACCATCCTTGCACACAAAGTGCATCC-ATAAGCACAAAA
* ** * * *
634870 GTGCCACAATGACGCATAGGTGTTGTAGTATACAACGACACTAGACTAACAATTCTAGAGT-GTA
1 GTGCCACAATGACGTATAGGTACTGTAGTATAGAACGACACTATACTAACAATTCAAGAGTGGTA
*** * *
634934 ATTCATTATGAATATTTTCCTTGCACACAAAGTGCAATCAATAAGCATATAAA
66 ATTCATTATGAATACCATCCTTGCACACAAAGTGC-ATCCATAAGCACA-AAA
* * *
634987 -TGCCACATTGATGTATAGGTACTGTAGTAT-GCAACAACACTATACTAACAATTCAAGAGTGGT
1 GTGCCACAATGACGTATAGGTACTGTAGTATAG-AACGACACTATACTAACAATTCAAGAGTGGT
* * * * *
635050 AATTCATTATGAATACTATACTTGCACACAAAGTGCACCCAATAAGCTCATAA
65 AATTCATTATGAATACCATCCTTGCACACAAAGTGCATCC-ATAAGCACAAAA
*
635103 GTGCCACAATGATGTATAGGTACTGTAGTATACG-ACGACACTATACTAACAATTTC--GTAGTG
1 GTGCCACAATGACGTATAGGTACTGTAGTATA-GAACGACACTATACTAACAA-TTCAAG-AGTG
* * * *
635165 GTAATTCATTATGAATACCATCCTTGCACACAATGTGTACCCAGTAAGCACATAA
63 GTAATTCATTATGAATACCATCCTTGCACACAAAGTGCATCCA-TAAGCACAAAA
*
635220 GTGTCACA
1 GTGCCACA
635228 GTACACCAAA
Statistics
Matches: 304, Mismatches: 42, Indels: 24
0.82 0.11 0.06
Matches are distributed among these distances:
116 98 0.32
117 202 0.66
118 3 0.01
119 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (116 bp):
GTGCCACAATGACGTATAGGTACTGTAGTATAGAACGACACTATACTAACAATTCAAGAGTGGTA
ATTCATTATGAATACCATCCTTGCACACAAAGTGCATCCATAAGCACAAAA
Found at i:636620 original size:19 final size:20
Alignment explanation
Indices: 636596--636646 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
636586 CAAAGTGACC
636596 CAATTTC-ACACGCTAACAT
1 CAATTTCAACACGCTAACAT
**
636615 CAATTTCAACATTCTAACAT
1 CAATTTCAACACGCTAACAT
*
636635 TAATTTCCAACA
1 CAATTT-CAACA
636647 TAGTAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 7 0.26
20 15 0.56
21 5 0.19
ACGTcount: A:0.39, C:0.27, G:0.02, T:0.31
Consensus pattern (20 bp):
CAATTTCAACACGCTAACAT
Found at i:636633 original size:20 final size:21
Alignment explanation
Indices: 636608--636647 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
636598 ATTTCACACG
636608 CTAACATCAATTT-CAACATT
1 CTAACATCAATTTCCAACATT
*
636628 CTAACATTAATTTCCAACAT
1 CTAACATCAATTTCCAACAT
636648 AGTAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (21 bp):
CTAACATCAATTTCCAACATT
Found at i:637836 original size:29 final size:29
Alignment explanation
Indices: 637799--637905 Score: 85
Period size: 30 Copynumber: 3.7 Consensus size: 29
637789 ACAAATAAAA
*
637799 TTTGGAAATTATACTTTTGGCCCTAAACT
1 TTTGAAAATTATACTTTTGGCCCTAAACT
* * *
637828 TTTGAAAATTA-CCTTTTTAGCCCCTGAACT
1 TTTGAAAATTATAC-TTTT-GGCCCTAAACT
* ** *
637858 TTCTTAACTTTATACTTTTGGCACTAAACT
1 TT-TGAAAATTATACTTTTGGCCCTAAACT
637888 TTT-AAAATTTATA-TTTTG
1 TTTGAAAA-TTATACTTTTG
637906 ATTCCTAACC
Statistics
Matches: 60, Mismatches: 13, Indels: 11
0.71 0.15 0.13
Matches are distributed among these distances:
28 8 0.13
29 20 0.33
30 21 0.35
31 10 0.17
32 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (29 bp):
TTTGAAAATTATACTTTTGGCCCTAAACT
Found at i:638077 original size:22 final size:22
Alignment explanation
Indices: 638035--638079 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
638025 TCATTGGTTT
*
638035 TATATATGATGTTTATCATGAA
1 TATATATGATGTTAATCATGAA
638057 TATATATGATGCTTAAT-ATGAA
1 TATATATGATG-TTAATCATGAA
638079 T
1 T
638080 GTTATTTCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (22 bp):
TATATATGATGTTAATCATGAA
Found at i:638350 original size:38 final size:39
Alignment explanation
Indices: 638249--638372 Score: 153
Period size: 39 Copynumber: 3.2 Consensus size: 39
638239 AGGATACGTA
** *
638249 GTGCATATGGTGGGTAC-AACTTTATGTGTAAGAACTTCG
1 GTGCATATGGTGGACACGAAC-TTATGTGTAAGCACTTCG
* *
638288 GTGCATATGGTGGGCATGAACTTATGTGTAAGCACTTCG
1 GTGCATATGGTGGACACGAACTTATGTGTAAGCACTTCG
* * *
638327 GT-CATATGGTTGACACGACCTTATATGTAAGCACTTCG
1 GTGCATATGGTGGACACGAACTTATGTGTAAGCACTTCG
638365 GTGCATAT
1 GTGCATAT
638373 TTGACTCGAG
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
38 33 0.44
39 39 0.52
40 3 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (39 bp):
GTGCATATGGTGGACACGAACTTATGTGTAAGCACTTCG
Found at i:640296 original size:30 final size:30
Alignment explanation
Indices: 640250--640319 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
640240 AAAGTTACAT
* *
640250 AAAGTTCAGGAGACCAAAAGTG-TATTTTTCA
1 AAAGTT-AGGAGACCAAAAG-GCTAATTTTAA
*
640281 AAAGTTAGGGGACCAAAAGGCTAATTTTAA
1 AAAGTTAGGAGACCAAAAGGCTAATTTTAA
640311 AAAGTTAGG
1 AAAGTTAGG
640320 TGTTTTGGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 1 0.03
30 28 0.80
31 6 0.17
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (30 bp):
AAAGTTAGGAGACCAAAAGGCTAATTTTAA
Found at i:642587 original size:22 final size:22
Alignment explanation
Indices: 642560--642604 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
642550 TGATTATTAT
*
642560 TATATATGATTTTTA-TCATGAA
1 TATATATGATGTTTACT-ATGAA
642582 TATATATGATGTTTACTATGAA
1 TATATATGATGTTTACTATGAA
642604 T
1 T
642605 GTTATTGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (22 bp):
TATATATGATGTTTACTATGAA
Found at i:657003 original size:18 final size:18
Alignment explanation
Indices: 656967--657004 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
656957 TTGCTGGAAT
*
656967 TTGGGCCTGAACTAGTTG
1 TTGGGCCTGAACTAATTG
656985 TTGGGCCTGAA-TCAATTG
1 TTGGGCCTGAACT-AATTG
657003 TT
1 TT
657005 ACCCAAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (18 bp):
TTGGGCCTGAACTAATTG
Found at i:657725 original size:36 final size:36
Alignment explanation
Indices: 657669--657757 Score: 151
Period size: 36 Copynumber: 2.5 Consensus size: 36
657659 CATCTAATTT
* * *
657669 CACTACTCTTTCGTGAATATCAGATTGATTTGATTC
1 CACTACTCTTCCTTGGATATCAGATTGATTTGATTC
657705 CACTACTCTTCCTTGGATATCAGATTGATTTGATTC
1 CACTACTCTTCCTTGGATATCAGATTGATTTGATTC
657741 CACTACTCTTCCTTGGA
1 CACTACTCTTCCTTGGA
657758 GTTTGATTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (36 bp):
CACTACTCTTCCTTGGATATCAGATTGATTTGATTC
Found at i:657764 original size:31 final size:32
Alignment explanation
Indices: 657690--657766 Score: 102
Period size: 36 Copynumber: 2.3 Consensus size: 32
657680 CGTGAATATC
657690 AGATTGATTTGATTCCACTACTCTTCCTTGGATA
1 AGATTGATTTGATTCCACTACTCTTCCTTGG--A
657724 TCAGATTGATTTGATTCCACTACTCTTCCTTGG-
1 --AGATTGATTTGATTCCACTACTCTTCCTTGGA
*
657757 AGTTTGATTT
1 AGATTGATTT
657767 AACTTGAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
31 9 0.22
36 31 0.77
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (32 bp):
AGATTGATTTGATTCCACTACTCTTCCTTGGA
Found at i:657843 original size:20 final size:20
Alignment explanation
Indices: 657818--657901 Score: 107
Period size: 20 Copynumber: 4.2 Consensus size: 20
657808 ACTAAAAGAA
*
657818 TTTACAAATTACCCGAAGGC
1 TTTACAAATGACCCGAAGGC
*
657838 TTTACAAATGA-CCTAGAGGC
1 TTTACAAATGACCCGA-AGGC
657858 TTTACAAATGACCCGAAGGC
1 TTTACAAATGACCCGAAGGC
* * *
657878 TTTGCAAATGAACCGGAGGC
1 TTTACAAATGACCCGAAGGC
657898 TTTA
1 TTTA
657902 ATTGTCTAGA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.05
20 49 0.89
21 3 0.05
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (20 bp):
TTTACAAATGACCCGAAGGC
Found at i:657862 original size:40 final size:40
Alignment explanation
Indices: 657818--657901 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
657808 ACTAAAAGAA
*
657818 TTTACAAATTACCCGAAGGCTTTACAAATG-ACCTAGAGGC
1 TTTACAAATGACCCGAAGGCTTTACAAATGAACC-AGAGGC
* *
657858 TTTACAAATGACCCGAAGGCTTTGCAAATGAACCGGAGGC
1 TTTACAAATGACCCGAAGGCTTTACAAATGAACCAGAGGC
657898 TTTA
1 TTTA
657902 ATTGTCTAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 37 0.93
41 3 0.08
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (40 bp):
TTTACAAATGACCCGAAGGCTTTACAAATGAACCAGAGGC
Found at i:658623 original size:22 final size:22
Alignment explanation
Indices: 658595--658649 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
658585 AAAGCTTTCG
658595 TCTTTGAAAAGAGAATCTATCA
1 TCTTTGAAAAGAGAATCTATCA
*
658617 TCTTTGAAAAGAGAATCTGTCA
1 TCTTTGAAAAGAGAATCTATCA
*
658639 TCCTTGTAAAA
1 TCTTTG-AAAA
658650 TGTAGATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (22 bp):
TCTTTGAAAAGAGAATCTATCA
Found at i:667262 original size:6 final size:6
Alignment explanation
Indices: 662199--667259 Score: 8950
Period size: 6 Copynumber: 852.8 Consensus size: 6
662189 TGAATACAAA
* * * * * *
662199 TGTAAA TGTAAA TGTAAA TGTAAA TGTAA- TGTAAA TGTAAA TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662246 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662294 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662342 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662390 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662438 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662486 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662534 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662582 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662630 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662678 TGTAAG TGT-AG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662725 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* *
662773 TGTAAG TGTAAG TGTAAG TGTAAG TGTCAG TGTCAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * *
662821 TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGCAAG TGCAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662869 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662917 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
662965 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663013 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
663061 TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * *
663109 TGCAAG TGCAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* *
663157 TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGCAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
663205 TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
663253 TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGT---
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663298 TGTAAG TGTAAG TGTAAG TGT--- TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663343 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* *
663391 TGTAAG TGCAAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663439 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663487 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663535 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663583 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663631 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663679 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663727 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663775 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAA- -GTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
663821 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* *
663869 TGTAAG TGCAAG TGTAAG TGT-AG TGCAAG TGTAAG TGTAAG TGTCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGT-AAG
*
663917 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* *
663965 TGCAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664013 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664061 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664109 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664157 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664205 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664253 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664301 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664349 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * *
664397 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGCAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * * * * * *
664445 TGCAAG TGCAAG TGCAAG TGCAAG TGTAAG TGCAAG TGCAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * * * * * *
664493 TGCAAG TGTAAG TGCAAG TGCAAG TGCAAG TGCAAG TGCAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
664541 TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664589 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664637 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664685 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664733 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGT---
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664778 TGTAAG TGTAAG TGT--- TGTAAG TGTAAG TGTAAG TGT--- TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664820 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAA-
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664867 -GTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
664914 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
664962 TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
665010 TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665058 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665106 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665154 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665202 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665250 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
665298 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * * *
665346 TGCAAG TGTAAG TGTAAG TGTAAG TGCAAG TGCAAG TGTAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
665394 TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGT--- TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665439 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665487 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * * *
665535 TGCAAG TGCAAG TGTAAG TGTAAG TGTAAG TGCAAG TGCAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * *
665583 TGCAAG TGCAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665631 TGT--- TGTAAG TGTAAG TGTAAG TGT--- TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665673 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGT--- TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665718 TGTAAG TGT--- TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665763 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* *
665811 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
665859 TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665907 TGTAAG TGT--- TGTAAG TGTAAG TGTAAG TGT--- TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665949 TGTAAG TGT--- TGTAAG TGTAAG TGT--- TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
665991 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666039 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666087 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
666135 TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
666183 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666231 TGTAAG TGTAAG TGTAAG TGT--- TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666276 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666324 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGT-AAG TGTAAG TGTAAG
666373 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666421 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * * * *
666469 TGTAAG TGCAAG TGCAAG TGTAAG TGCAAG TGCAAG TGTAAG TGCAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
666517 TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666565 TGTAAG TGT--- TGTAAG TGTAAG TGTAAGTG TGTAAG TGTAAG TGT---
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAA--G TGTAAG TGTAAG TGTAAG
666609 TGTAAG TGTAAG TGT--- TGTAAG TGTAAG TGTAAG TGTAAG -GTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666653 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666701 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666749 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
666797 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
* * *
666845 TGTCAG TGTCAG TGTAAG TGTAAG TGCAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
666893 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
666941 TGCAAG TGTAAG TGTAAG TGTAAG TGTAAGTG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAA--G TGTAAG TGTAAG TGTAAG
666991 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
667039 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
667087 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
667135 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
667183 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG TGTAAG
*
667231 TGTAAG TGTAAG TGTAAG TGTAAA TGTAA
1 TGTAAG TGTAAG TGTAAG TGTAAG TGTAA
667260 ATGCATGTAT
Statistics
Matches: 4905, Mismatches: 82, Indels: 136
0.96 0.02 0.03
Matches are distributed among these distances:
3 54 0.01
4 8 0.00
5 19 0.00
6 4800 0.98
7 12 0.00
8 12 0.00
ACGTcount: A:0.33, C:0.01, G:0.33, T:0.32
Consensus pattern (6 bp):
TGTAAG
Found at i:670927 original size:20 final size:19
Alignment explanation
Indices: 670871--670929 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
670861 CTTCGGGATT
670871 TATAA-ATAATAA-TATT-
1 TATAATATAATAATTATTA
*
670887 TATAATATAATTATTATTA
1 TATAATATAATAATTATTA
670906 TATATATATAATAATGTA-TA
1 TATA-ATATAATAAT-TATTA
670926 TATA
1 TATA
670930 CAAGTCATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
16 5 0.14
17 6 0.17
18 4 0.11
19 4 0.11
20 15 0.42
21 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
TATAATATAATAATTATTA
Found at i:678641 original size:44 final size:44
Alignment explanation
Indices: 678593--678855 Score: 420
Period size: 44 Copynumber: 6.0 Consensus size: 44
678583 TAAAACGAAT
* *
678593 CCATAAATGAAATGTATAACGGTGCATTAAGGCATGAAATGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
* *
678637 CCATAAATGAAATGCATATCGGTGTATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
* * *
678681 ACATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGATA
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
* *
678725 TCATAAATGAAATGCATAACGGTGCATTAAGGCATG-AATGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
*
678768 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
*
678812 GCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
678856 TCATCAATAA
Statistics
Matches: 202, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 40 0.20
44 162 0.80
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (44 bp):
CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
Found at i:678798 original size:131 final size:132
Alignment explanation
Indices: 678594--678859 Score: 462
Period size: 131 Copynumber: 2.0 Consensus size: 132
678584 AAAACGAATC
* *
678594 CATAAATGAAATGTATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATATCGG
1 CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACGG
*
678659 TGTATTAAGGCATGAAAGGATGACATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGAT
66 TGCATTAAGGCATGAAAGGATGACATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGAT
678724 AT
131 AT
678726 CATAAATGAAATGCATAACGGTGCATTAAGGCATG-AATGATGCCATAAATGAAATGCATAACGG
1 CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACGG
* * *
678790 TGCATTAAGGCATGAAATGATGGCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGAT
66 TGCATTAAGGCATGAAAGGATGACATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGAT
*
678855 GT
131 AT
678857 CAT
1 CAT
678860 CAATAAAAAC
Statistics
Matches: 127, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
131 93 0.73
132 34 0.27
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (132 bp):
CATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACGG
TGCATTAAGGCATGAAAGGATGACATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGAT
AT
Found at i:678817 original size:87 final size:87
Alignment explanation
Indices: 678593--678855 Score: 418
Period size: 87 Copynumber: 3.0 Consensus size: 87
678583 TAAAACGAAT
* *
678593 CCATAAATGAAATGTATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATATCG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACG
*
678658 GTGTATTAAGGCATGAAAGGATG
66 GTGCATTAAGGCATG-AAGGATG
* * * **
678681 ACATAAATGAAATGCATAACAGTGCATTAAGGCATGAAAGGATATCATAAATGAAATGCATAACG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACG
*
678746 GTGCATTAAGGCATGAATGATG
66 GTGCATTAAGGCATGAAGGATG
*
678768 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGGCATAAATGAAATGCATAACG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACG
678833 GTGCATTAAGGCATGAAAGGATG
66 GTGCATTAAGGCATG-AAGGATG
678856 TCATCAATAA
Statistics
Matches: 159, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 81 0.51
88 78 0.49
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (87 bp):
CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAATGATGCCATAAATGAAATGCATAACG
GTGCATTAAGGCATGAAGGATG
Found at i:679277 original size:22 final size:20
Alignment explanation
Indices: 679250--679302 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
679240 TATGTACATA
* *
679250 TATATTTTATAATAAAGTTAT
1 TATATTTTATAA-AAACTAAT
*
679271 TATTATTATGATAAAAACTAAT
1 TA-TATT-TTATAAAAACTAAT
679293 TATATTTTAT
1 TATATTTTAT
679303 TGTTTCTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 3 0.12
21 6 0.23
22 12 0.46
23 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
TATATTTTATAAAAACTAAT
Found at i:679345 original size:16 final size:15
Alignment explanation
Indices: 679326--679355 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
679316 ATTTGTTCAT
679326 TTATTTATCTATTTTA
1 TTATTTAT-TATTTTA
679342 TTATTTATTATTTT
1 TTATTTATTATTTT
679356 GTTGTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTATTATTTTA
Found at i:692323 original size:19 final size:20
Alignment explanation
Indices: 692295--692343 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
692285 GATGCAATTA
* **
692295 GTATCTATACTA-AGAGGGG
1 GTATCGATACTATAGAGAAG
692314 GTATCGATACTATAGAGAAG
1 GTATCGATACTATAGAGAAG
692334 GTATCGATAC
1 GTATCGATAC
692344 CATTGATTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (20 bp):
GTATCGATACTATAGAGAAG
Found at i:692844 original size:55 final size:55
Alignment explanation
Indices: 692762--692998 Score: 239
Period size: 55 Copynumber: 4.3 Consensus size: 55
692752 ATTACCAAAT
* * *
692762 GGCACTATGTGTGCAAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTGTGTGTGC-AAAACTACGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
692818 GGCACTGTGTGTGCAAAACTATGAAATTCATAAT-AGATTTATGAATTTCAC-TATG
1 GGCACTGTGTGTGCAAAACTACGAAATTCATAATAAG-TTTATGAATTTC-CGTATG
* * * * * *
692873 GGCATTTTGTGTGCAAAATTACGAAATTCATAATAAGTTTATGAATTCCCATATT
1 GGCACTGTGTGTGCAAAACTACGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * * * * * *
692928 GGTAGTGGGTGTGC-AACCCACGTAAATT-ATAATAAGTTTGTGAATTACCGTATT
1 GGCACTGTGTGTGCAAAACTACG-AAATTCATAATAAGTTTATGAATTTCCGTATG
*
692982 GGCACTGCGTGTGCAAA
1 GGCACTGTGTGTGCAAA
692999 CTATAGAGCT
Statistics
Matches: 153, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
54 42 0.27
55 95 0.62
56 16 0.10
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (55 bp):
GGCACTGTGTGTGCAAAACTACGAAATTCATAATAAGTTTATGAATTTCCGTATG
Found at i:693236 original size:45 final size:45
Alignment explanation
Indices: 693186--693514 Score: 430
Period size: 45 Copynumber: 7.6 Consensus size: 45
693176 GAGTTAAAAA
* * *
693186 GCATGAAAGGATACGATAAATGAAATGCATATCGGTGCATTAAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
* *
693231 GCATGAAAGGATG---T-CAT-AAATG-A-AA---TGCATTAATG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
* *
693266 GAATGAAAGGATGTCATAAATGAAATGCATAACGGTGCATTAAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
* **
693311 GAATGAAAGGATGCCATAAATGAAATGCATAACAATGCATTAAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
*
693356 GCATGAAAGAATGCCATAAATGAAATGCATAACGGTGCATTAAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
* *
693401 TCATGAAAGGATGCCATAAATGAAATGCATAA-GGTACATTAAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
*
693445 GCATGAATGGATGCCATAAATGAAATGCATAACGGT-CAATTAAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC-ATTAAAG
*
693490 GCATGAAAGGATGCCCTAAATGAAA
1 GCATGAAAGGATGCCATAAATGAAA
693515 ATAATGAAGA
Statistics
Matches: 251, Mismatches: 21, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
35 21 0.08
38 2 0.01
39 3 0.01
40 10 0.04
41 3 0.01
42 3 0.01
44 42 0.17
45 167 0.67
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (45 bp):
GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAG
Found at i:693255 original size:17 final size:17
Alignment explanation
Indices: 693233--693290 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
693223 CATTAAAGGC
693233 ATGAAAGGATGTCATAA
1 ATGAAAGGATGTCATAA
* * *
693250 ATGAAATGCAT-TAATGGA
1 ATGAAA-GGATGTCAT-AA
693268 ATGAAAGGATGTCATAA
1 ATGAAAGGATGTCATAA
693285 ATGAAA
1 ATGAAA
693291 TGCATAACGG
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
17 19 0.59
18 13 0.41
ACGTcount: A:0.48, C:0.05, G:0.22, T:0.24
Consensus pattern (17 bp):
ATGAAAGGATGTCATAA
Found at i:693260 original size:35 final size:35
Alignment explanation
Indices: 693221--693295 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
693211 TGCATATCGG
*
693221 TGCATTAAAGGCATGAAAGGATGTCATAAATGAAA
1 TGCATTAAAGGAATGAAAGGATGTCATAAATGAAA
*
693256 TGCATTAATGGAATGAAAGGATGTCATAAATGAAA
1 TGCATTAAAGGAATGAAAGGATGTCATAAATGAAA
693291 TGCAT
1 TGCAT
693296 AACGGTGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (35 bp):
TGCATTAAAGGAATGAAAGGATGTCATAAATGAAA
Found at i:693321 original size:80 final size:80
Alignment explanation
Indices: 693186--693514 Score: 363
Period size: 89 Copynumber: 3.9 Consensus size: 80
693176 GAGTTAAAAA
* * * *
693186 GCATGAAAGGATACGATAAATGAAATGCATATCGGTGCATTAAAGGCATGAAAGGATGTCATAAA
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAA
693251 TGAAATGCATTAATG
66 TGAAATGCATTAATG
* * *
693266 GAATGAAAGGATGTCATAAATGAAATGCATAACGGTGCATTAAAGGAATGAAAGGATGCCATAAA
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCC----A
*
693331 TGAAATGCATAACAATGCATTAAAG
62 T-AAATG----A-AATGCATTAATG
* *
693356 GCATGAAAGAATGCCATAAATGAAATGCATAACGGTGCATTAAAGTCATGAAAGGATGCCATAAA
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAA
693421 TGAAATGCATAAGGTACATTAAAG
66 TGAAATGCAT----TA-A-T---G
* *
693445 GCATGAATGGATGCCATAAATGAAATGCATAACGGT-CAATTAAAGGCATGAAAGGATGCCCTAA
1 GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGC-ATTAAAGGCATGAAAGGATGCCATAA
693509 ATGAAA
65 ATGAAA
693515 ATAATGAAGA
Statistics
Matches: 211, Mismatches: 18, Indels: 31
0.81 0.07 0.12
Matches are distributed among these distances:
80 60 0.28
81 1 0.00
84 4 0.02
85 11 0.05
86 2 0.01
88 1 0.00
89 66 0.31
90 66 0.31
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (80 bp):
GCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAAA
TGAAATGCATTAATG
Found at i:693399 original size:24 final size:24
Alignment explanation
Indices: 693282--693354 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
693272 AAGGATGTCA
693282 TAAATGAAATGCATAACGGTGCAT
1 TAAATGAAATGCATAACGGTGCAT
*
693306 TAAA-GGAATG-A-AA-GGATGCCA-
1 TAAATGAAATGCATAACGG-TG-CAT
**
693327 TAAATGAAATGCATAACAATGCAT
1 TAAATGAAATGCATAACGGTGCAT
693351 TAAA
1 TAAA
693355 GGCATGAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 2 0.05
21 8 0.21
22 8 0.21
23 8 0.21
24 12 0.32
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (24 bp):
TAAATGAAATGCATAACGGTGCAT
Found at i:693534 original size:134 final size:135
Alignment explanation
Indices: 693268--693514 Score: 372
Period size: 134 Copynumber: 1.8 Consensus size: 135
693258 CATTAATGGA
* *
693268 ATGAAAGGATGTCATAAATGAAATGCATAACGGTGCATTAAAGGAATGAAAGGATGCCATAAATG
1 ATGAAAGGATGCCATAAATGAAATGCATAACGGTACATTAAAGGAATGAAAGGATGCCATAAATG
* * *
693333 AAATGCATAACAATGCATTAAAGGCATGAAAGAATGCCATAAATGAAATGCATAACGGTGCATTA
66 AAATGCATAACAATGCATTAAAGGCATGAAAGAATGCCATAAATGAAATGAATAACGATGCACTA
693398 AAGTC
131 AAGTC
* *
693403 ATGAAAGGATGCCATAAATGAAATGCATAA-GGTACATTAAAGGCATGAATGGATGCCATAAATG
1 ATGAAAGGATGCCATAAATGAAATGCATAACGGTACATTAAAGGAATGAAAGGATGCCATAAATG
** * *
693467 AAATGCATAACGGT-CAATTAAAGGCATGAAAGGATGCCCTAAATGAAA
66 AAATGCATAACAATGC-ATTAAAGGCATGAAAGAATGCCATAAATGAAA
693515 ATAATGAAGA
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
133 1 0.01
134 73 0.71
135 29 0.28
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21
Consensus pattern (135 bp):
ATGAAAGGATGCCATAAATGAAATGCATAACGGTACATTAAAGGAATGAAAGGATGCCATAAATG
AAATGCATAACAATGCATTAAAGGCATGAAAGAATGCCATAAATGAAATGAATAACGATGCACTA
AAGTC
Found at i:697768 original size:40 final size:40
Alignment explanation
Indices: 697709--697971 Score: 306
Period size: 40 Copynumber: 6.8 Consensus size: 40
697699 ACTAACAGAT
** * *
697709 TGCACATAAAGTGTTAGTATCAGTAATCATTGAACAATAA
1 TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
*
697749 TGCACAAAAAGTG-C---A--AGT-ATCAGTGAACAGTAA
1 TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
* *
697782 TGCACATAAAGTGCCAGTATCAGTAATTAGTGATCAGTAA
1 TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
* * * * *
697822 TGAACATAAATTGCCAGTATCAGTCATCAATGAATAGTAA
1 TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
* *
697862 TGCACATAAAGTGCCAGTATTAGTAATCAGTGATCAGTAA
1 TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
* * * *
697902 TGAACATAAATTGCCAGTATCAGTCATTAGTGAACAGTAA
1 TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
*
697942 TGCACATAAAGTGCCAGTATCAGTATTCAG
1 TGCACATAAAGTGCCAGTATCAGTAATCAG
697972 AATCACTCCA
Statistics
Matches: 184, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
33 25 0.14
34 4 0.02
36 1 0.01
37 1 0.01
39 3 0.02
40 150 0.82
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (40 bp):
TGCACATAAAGTGCCAGTATCAGTAATCAGTGAACAGTAA
Found at i:697783 original size:33 final size:33
Alignment explanation
Indices: 697734--697805 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
697724 AGTATCAGTA
*
697734 ATCATTGAACAATAATGCACAAAAAGTGCAAGT
1 ATCAGTGAACAATAATGCACAAAAAGTGCAAGT
* * *
697767 ATCAGTGAACAGTAATGCACATAAAGTGCCAGT
1 ATCAGTGAACAATAATGCACAAAAAGTGCAAGT
697800 ATCAGT
1 ATCAGT
697806 AATTAGTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.22
Consensus pattern (33 bp):
ATCAGTGAACAATAATGCACAAAAAGTGCAAGT
Found at i:697875 original size:80 final size:80
Alignment explanation
Indices: 697767--697971 Score: 356
Period size: 80 Copynumber: 2.6 Consensus size: 80
697757 AAGTGCAAGT
*
697767 ATCAGTGAACAGTAATGCACATAAAGTGCCAGTATCAGTAATTAGTGATCAGTAATGAACATAAA
1 ATCAGTGAACAGTAATGCACATAAAGTGCCAGTATCAGTAATCAGTGATCAGTAATGAACATAAA
697832 TTGCCAGTATCAGTC
66 TTGCCAGTATCAGTC
* * *
697847 ATCAATGAATAGTAATGCACATAAAGTGCCAGTATTAGTAATCAGTGATCAGTAATGAACATAAA
1 ATCAGTGAACAGTAATGCACATAAAGTGCCAGTATCAGTAATCAGTGATCAGTAATGAACATAAA
697912 TTGCCAGTATCAGTC
66 TTGCCAGTATCAGTC
* *
697927 ATTAGTGAACAGTAATGCACATAAAGTGCCAGTATCAGTATTCAG
1 ATCAGTGAACAGTAATGCACATAAAGTGCCAGTATCAGTAATCAG
697972 AATCACTCCA
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 116 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (80 bp):
ATCAGTGAACAGTAATGCACATAAAGTGCCAGTATCAGTAATCAGTGATCAGTAATGAACATAAA
TTGCCAGTATCAGTC
Found at i:699116 original size:54 final size:54
Alignment explanation
Indices: 698982--699536 Score: 754
Period size: 54 Copynumber: 10.3 Consensus size: 54
698972 TTCTATAGTT
** * * * *
698982 TTGCACACGTAGTGCCAATACGGTAATTCACAAACTCATTATGAACTACGTGGT-A-
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTC-T--TAAG
* * * *
699037 TTGCACACATAGTGCCAATATGGAAATTCACAAACTTATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
* *
699091 TTGCACACACAGTGCCAATACGGAAATTCATAAACTTATTATGAATTTATTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
* *
699145 TTGCACACACAGTGCCAATACGAAAATTCATAAACTCATTGTGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
* * * * *
699199 TTTCACATAGAGTACCAGTACGGAAATTCATAAACTCATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
** *
699253 TTGCACACACAGTGTTAATAAGGAAATTCATAAACTCATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
* * *
699307 TTGTATACACAGTGCCAATACAGAAATTCATAAACTCATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
* *
699361 TTGCACATACAGTGCCAATACGGATATTCATAAACTCATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
* * * * * * *
699415 TTGCACACATAGTTCTAGTACGGAAATTAACAAACTTATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
699469 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
1 TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
*
699523 TTGCACACATAGTG
1 TTGCACACACAGTG
699537 TTCATTCGGT
Statistics
Matches: 441, Mismatches: 57, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
52 1 0.00
53 1 0.00
54 396 0.90
55 43 0.10
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.32
Consensus pattern (54 bp):
TTGCACACACAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
Found at i:706355 original size:2 final size:2
Alignment explanation
Indices: 706348--706388 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
706338 TCAGTCTACA
706348 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
706389 ATTTACGACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:706580 original size:13 final size:13
Alignment explanation
Indices: 706545--706612 Score: 91
Period size: 13 Copynumber: 5.2 Consensus size: 13
706535 AATGACGCGC
706545 AATGCGCGTCATA
1 AATGCGCGTCATA
**
706558 AATATGCGTCATA
1 AATGCGCGTCATA
*
706571 AATGCACGTCATA
1 AATGCGCGTCATA
* *
706584 AATGCGTGTTATA
1 AATGCGCGTCATA
706597 AATGCGCGTCATA
1 AATGCGCGTCATA
706610 AAT
1 AAT
706613 TTATGACGCA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:708704 original size:45 final size:45
Alignment explanation
Indices: 708655--708742 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
708645 GAACATCGAA
* * * *
708655 TGCATTTTATGCATTGATGCACATATCATGCATCGATGCACTCAG
1 TGCATTTGATGCATCGATGCACAAACCATGCATCGATGCACTCAG
708700 TGCATTTGATGCATCGATGCACAAACCATGCATCGATGCACTC
1 TGCATTTGATGCATCGATGCACAAACCATGCATCGATGCACTC
708743 TGGCTATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
TGCATTTGATGCATCGATGCACAAACCATGCATCGATGCACTCAG
Found at i:714655 original size:23 final size:23
Alignment explanation
Indices: 714586--714666 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
714576 ACACCTAACA
714586 GTGCATCGATGCATCA--TTGAAT
1 GTGCATCGATGCA-CACCTTGAAT
* *
714608 GTGCATCGAT--ACACCATGAAG
1 GTGCATCGATGCACACCTTGAAT
* *
714629 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCACACCTTGAAT
714652 GTGCATCGATGCACA
1 GTGCATCGATGCACA
714667 AGGCTATGCA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
19 2 0.04
20 1 0.02
21 13 0.28
22 10 0.21
23 21 0.45
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (23 bp):
GTGCATCGATGCACACCTTGAAT
Found at i:714659 original size:44 final size:42
Alignment explanation
Indices: 714567--714661 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 42
714557 TTGTGCTTCA
* *
714567 TGCATCGATACACCTAACAGTGCATCGATGCATCATTGAATG
1 TGCATCGATACACCTAACAGTGCACCGATGCAGCATTGAATG
* *
714609 TGCATCGATACACCATGAA-GGTGCACCGATGCACGCCTTGAATG
1 TGCATCGATACACC-T-AACAGTGCACCGATGCA-GCATTGAATG
714653 TGCATCGAT
1 TGCATCGAT
714662 GCACAAGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 14 0.30
43 13 0.28
44 19 0.41
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (42 bp):
TGCATCGATACACCTAACAGTGCACCGATGCAGCATTGAATG
Found at i:714678 original size:20 final size:20
Alignment explanation
Indices: 714653--714698 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
714643 GCCTTGAATG
714653 TGCATCGATGCACAAGGCTA
1 TGCATCGATGCACAAGGCTA
714673 TGCATCGATGCACAAGGCTA
1 TGCATCGATGCACAAGGCTA
714693 TGCATC
1 TGCATC
714699 CGTCGGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (20 bp):
TGCATCGATGCACAAGGCTA
Found at i:714682 original size:43 final size:43
Alignment explanation
Indices: 714585--714685 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
714575 TACACCTAAC
* * *
714585 AGTGCATCGATGCA-TCATTGAATGTGCATCGATACACCATGA
1 AGTGCATCGATGCACGCATTGAATGTGCATCGATACACAAGGA
* * * *
714627 AGGTGCACCGATGCACGCCTTGAATGTGCATCGATGCACAAGGCT
1 A-GTGCATCGATGCACGCATTGAATGTGCATCGATACACAAGG-A
714672 A-TGCATCGATGCAC
1 AGTGCATCGATGCAC
714686 AAGGCTATGC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
42 1 0.02
43 24 0.50
44 22 0.46
45 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (43 bp):
AGTGCATCGATGCACGCATTGAATGTGCATCGATACACAAGGA
Found at i:716241 original size:21 final size:21
Alignment explanation
Indices: 716199--716242 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
716189 ACCTCGGGAG
*
716199 CTAGCTCTTCACGAGCTGCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
716220 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
716241 CT
1 CT
716243 CCTCCTCCGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.16, T:0.34
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:726831 original size:95 final size:94
Alignment explanation
Indices: 726690--726862 Score: 292
Period size: 95 Copynumber: 1.8 Consensus size: 94
726680 CATTTTCAGT
* * *
726690 TGTTTACATTTCAAATACATCTCAATTGCCATGACATTTCCATCTGCTACACTGCCACGTTGATA
1 TGTTTACATTTCAAATACATCTCAATTACCATGACATTTCCATCTGCTACACTGCCACATTGACA
*
726755 TCTCATCTTACTTTGCCATAACATTTCCA
66 TCACATCTTACTTTGCCATAACATTTCCA
*
726784 TGTTTACATTTCAAATACATATTCAATTACCATGACATTTCCATCTGCTACACTGCCACATTGAC
1 TGTTTACATTTCAAATACAT-CTCAATTACCATGACATTTCCATCTGCTACACTGCCACATTGAC
726849 ATCACATCTTACTT
65 ATCACATCTTACTT
726863 GTGCATATCA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
94 20 0.27
95 53 0.73
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (94 bp):
TGTTTACATTTCAAATACATCTCAATTACCATGACATTTCCATCTGCTACACTGCCACATTGACA
TCACATCTTACTTTGCCATAACATTTCCA
Found at i:727260 original size:19 final size:19
Alignment explanation
Indices: 727236--727273 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
727226 CGCAATTTGC
727236 ACTTTTAGTGCAAGACAAA
1 ACTTTTAGTGCAAGACAAA
727255 ACTTTTAGTGCAAGACAAA
1 ACTTTTAGTGCAAGACAAA
727274 CACACATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (19 bp):
ACTTTTAGTGCAAGACAAA
Found at i:727452 original size:29 final size:29
Alignment explanation
Indices: 727410--727477 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
727400 AATGTAACTG
* *
727410 TGTACAGTAGTACCAAAATCACATTACTA
1 TGTACAATAATACCAAAATCACATTACTA
*
727439 TGTACAATAATACCGAAATCACATTACTA
1 TGTACAATAATACCAAAATCACATTACTA
727468 TGTAC-ATAAT
1 TGTACAATAAT
727478 GCACCTGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (29 bp):
TGTACAATAATACCAAAATCACATTACTA
Found at i:731684 original size:13 final size:13
Alignment explanation
Indices: 731666--731691 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
731656 AATTATGCCA
731666 TGGTAATACATGT
1 TGGTAATACATGT
731679 TGGTAATACATGT
1 TGGTAATACATGT
731692 CTACATGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TGGTAATACATGT
Found at i:732872 original size:19 final size:19
Alignment explanation
Indices: 732843--732895 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
732833 TATTTAAACT
732843 TAAATCAAAATAATTAA-AA
1 TAAAT-AAAATAATTAATAA
**
732862 TAAATATAAATTTTTAATAA
1 TAAATA-AAATAATTAATAA
*
732882 TATATAAAATAATT
1 TAAATAAAATAATT
732896 TATATGATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 1 0.04
19 19 0.70
20 7 0.26
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATAAAATAATTAATAA
Found at i:732943 original size:14 final size:14
Alignment explanation
Indices: 732926--732973 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
732916 ATCTATAATA
732926 TAATATTAAAAAAT
1 TAATATTAAAAAAT
*
732940 TAATATT---TAAT
1 TAATATTAAAAAAT
732951 T--TATTAAAAAAT
1 TAATATTAAAAAAT
732963 TAATATTAAAA
1 TAATATTAAAA
732974 TTAAAATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
9 4 0.15
11 4 0.15
12 4 0.15
14 15 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TAATATTAAAAAAT
Found at i:733003 original size:12 final size:12
Alignment explanation
Indices: 732958--733008 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
732948 AATTTATTAA
732958 AAAATT-AATATT
1 AAAATTAAATA-T
732970 AAAATTAAA-AT
1 AAAATTAAATAT
*
732981 CAAA-TATAATAT
1 AAAATTA-AATAT
732993 AAAATTAAATAT
1 AAAATTAAATAT
733005 AAAA
1 AAAA
733009 CCTCTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 2 0.06
11 6 0.18
12 21 0.64
13 4 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAAATAT
Found at i:739746 original size:17 final size:17
Alignment explanation
Indices: 739695--739740 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 17
739685 AAGTAATCCA
739695 TTAATTAAACTATTTCAT
1 TTAA-TAAACTATTTCAT
739713 TT-ATCAAACTATTTCAT
1 TTAAT-AAACTATTTCAT
739730 TTAATAAACTA
1 TTAATAAACTA
739741 ACTCATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.04
17 21 0.81
18 4 0.15
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (17 bp):
TTAATAAACTATTTCAT
Found at i:741144 original size:17 final size:17
Alignment explanation
Indices: 741122--741164 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
741112 TATTTTATTA
*
741122 AATGAACTAGTTTGATG
1 AATGAACTAGTTTAATG
*
741139 AATGAACTAGTTTAATT
1 AATGAACTAGTTTAATG
741156 AATGAACTA
1 AATGAACTA
741165 CTTCCATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.35
Consensus pattern (17 bp):
AATGAACTAGTTTAATG
Found at i:744897 original size:45 final size:45
Alignment explanation
Indices: 744843--745034 Score: 251
Period size: 45 Copynumber: 4.3 Consensus size: 45
744833 ATTATTCATT
* * * *
744843 ATTTTATTTATGGAAACCTTTCATGCCTTTAATGCGCCGTTACGA
1 ATTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTATGC
* * * *
744888 ATTTCATTTATTGCATCCTTTCATGCCTTTAATGCATCGTTATGC
1 ATTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTATGC
* * *
744933 TTTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
1 ATTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTATGC
* *
744978 ATTTCATTTATGGCATA-CTTTCATGCCTTTAATGCATCGTTATGC
1 ATTTCATTTATGG-AAACCTTTCATGCCTTTAATGCACCGTTATGC
745023 ATTTCATTTATG
1 ATTTCATTTATG
745035 TAATGAAAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 130 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (45 bp):
ATTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTATGC
Found at i:745001 original size:90 final size:90
Alignment explanation
Indices: 744844--745034 Score: 303
Period size: 90 Copynumber: 2.1 Consensus size: 90
744834 TTATTCATTA
* * *
744844 TTTT-ATTTATGGAAACCTTTCATGCCTTTAATGCGCCGTTACGAATTTCATTTATTGCATCCTT
1 TTTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTACGAATTTCATTTATGGCATACTT
744908 TCATGCCTTTAATGCATCGTTATGC
66 TCATGCCTTTAATGCATCGTTATGC
* * * *
744933 TTTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGCATTTCATTTATGGCATACTT
1 TTTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTACGAATTTCATTTATGGCATACTT
744998 TCATGCCTTTAATGCATCGTTATGC
66 TCATGCCTTTAATGCATCGTTATGC
*
745023 ATTTCATTTATG
1 TTTTCATTTATG
745035 TAATGAAAAA
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 4 0.04
90 89 0.96
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (90 bp):
TTTTCATTTATGGAAACCTTTCATGCCTTTAATGCACCGTTACGAATTTCATTTATGGCATACTT
TCATGCCTTTAATGCATCGTTATGC
Found at i:749902 original size:13 final size:13
Alignment explanation
Indices: 749884--749908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
749874 ATTTATTTAA
749884 ATAATAATAATAT
1 ATAATAATAATAT
749897 ATAATAATAATA
1 ATAATAATAATA
749909 ATATGACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:750281 original size:45 final size:45
Alignment explanation
Indices: 750210--750889 Score: 1047
Period size: 45 Copynumber: 15.1 Consensus size: 45
750200 GAGGTCTTAT
* * *
750210 CATCTTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* *
750255 CATCATGCACTGACGGGCTTACAGATGACCCGAAGGTTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
*
750300 CATCATACACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
*
750345 CATCATACACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
*
750390 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAG
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* * *
750435 CATCATGCACTGAAGGGCTTACAGATAACCCGAAGGTTTTGAAAG
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
750480 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* *
750525 CATCATGCACTGAAGGTCTTACAAATGACCCGAAGGTTTTGCAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
*
750570 CATCATGCACCGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* *
750615 CATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* * *
750660 CATCATGCACTGAAGGTTTTACATATGACCCGAAGGCTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* * * *
750705 CAT-ACTACATTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAA
1 CATCA-TGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
*
750750 CATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* * * *
750795 CATCATTCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
* * * *
750840 CATCTTGCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAA
1 CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
*
750885 TATCA
1 CATCA
750890 AAAAGCTCCC
Statistics
Matches: 592, Mismatches: 41, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
44 1 0.00
45 590 1.00
46 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (45 bp):
CATCATGCACTGAAGGTCTTACAGATGACCCGAAGGTTTTGAAAA
Found at i:751003 original size:122 final size:122
Alignment explanation
Indices: 750786--751011 Score: 321
Period size: 122 Copynumber: 1.9 Consensus size: 122
750776 GACCCGAAGG
* *
750786 TTTTGAAAACATCATTCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCTTGCACT
1 TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACT
* *
750851 GAAGGGCTTACAGATGACCCAAAGGCTTTGAAAATATCAAAAAGCTCCCGAAGGCTT
66 GAAGGACTTACAGATGACCCAAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
* * ** * * *
750908 TTTTGAAAACATCCTGCACT-ATAGGTCTTATGGATTACCCGAAGGTTTTGAAAACATCATGCAC
1 TTTTGAAAACATCATGCACTGA-AGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCATGCAC
750972 T-ATAGGACTTACAGATGACCCAAAGGCTTTGAAAACATCA
65 TGA-AGGACTTACAGATGACCCAAAGGCTTTGAAAACATCA
751012 TGCACCGAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
121 2 0.02
122 89 0.98
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (122 bp):
TTTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACT
GAAGGACTTACAGATGACCCAAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
Found at i:751024 original size:167 final size:167
Alignment explanation
Indices: 750742--751056 Score: 481
Period size: 167 Copynumber: 1.9 Consensus size: 167
750732 ACCCGAAGGC
*
750742 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATTCACTG
1 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
* * *
750807 AAGGGCTTACAGATGACCCAAAGGCTTTGAAAACATCTTGCACTGAAGGGCTTACAGATGACCCA
66 AAGGACTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACCGAAGGGCTTACAGATGACCCA
** *
750872 AAGGCTTTGAAAATATCAAAAAGCTCCCGAAGGCTTT
131 AAGGAATTGAAAACATCAAAAAGCTCCCGAAGGCTTT
* * ** *
750909 TTTGAAAACATCCTGCACT-ATAGGTCTTATGGATTACCCGAAGGTTTTGAAAACATCATGCACT
1 TTTGAAAACATCATGCACTGA-AGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACT
750973 -ATAGGACTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACCGAAGGGCTTACAGATGACC
65 GA-AGGACTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACCGAAGGGCTTACAGATGACC
*
751037 CGAAGGAATTGAAAACATCA
129 CAAAGGAATTGAAAACATCA
751057 TGCACTGAAG
Statistics
Matches: 133, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
166 2 0.02
167 131 0.98
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (167 bp):
TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAACATCATGCACTG
AAGGACTTACAGATGACCCAAAGGCTTTGAAAACATCATGCACCGAAGGGCTTACAGATGACCCA
AAGGAATTGAAAACATCAAAAAGCTCCCGAAGGCTTT
Found at i:751067 original size:45 final size:45
Alignment explanation
Indices: 750909--751074 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 45
750899 CGAAGGCTTT
* * ** * *
750909 TTTGAAAACATCCTGCACTATAGGTCTTATGGATTACCCGAAGGT
1 TTTGAAAACATCATGCACTATAGGGCTTACAGATGACCCGAAGGA
* * *
750954 TTTGAAAACATCATGCACTATAGGACTTACAGATGACCCAAAGGC
1 TTTGAAAACATCATGCACTATAGGGCTTACAGATGACCCGAAGGA
*
750999 TTTGAAAACATCATGCACCGA-AGGGCTTACAGATGACCCGAAGGA
1 TTTGAAAACATCATGCA-CTATAGGGCTTACAGATGACCCGAAGGA
*
751044 ATTGAAAACATCATGCACTGA-AGGGCTTACA
1 TTTGAAAACATCATGCACT-ATAGGGCTTACA
751075 AATGTGGGAA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.01
45 103 0.97
46 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (45 bp):
TTTGAAAACATCATGCACTATAGGGCTTACAGATGACCCGAAGGA
Found at i:751807 original size:22 final size:22
Alignment explanation
Indices: 751750--751807 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
751740 AATAAAGTTT
*
751750 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
751772 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
*
751794 TCATCTTTGTAGAG
1 TCATCTTTGAAGAG
751808 TGTAGATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAGAGAGAATCTA
Found at i:752229 original size:54 final size:54
Alignment explanation
Indices: 752170--752408 Score: 297
Period size: 52 Copynumber: 4.5 Consensus size: 54
752160 AACTGGTTCA
* * * * *
752170 TAAAACATTTGACAGCACATTCATCCTTTCATGTGGCTTCTGCCCAGAGGTTCG
1 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCACAGATGTTTG
* * *
752224 TAAAACATTTGACAACATATTC--CCTTTCCTGTGGTTTCTGTACAGATGTTTG
1 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCACAGATGTTTG
* *
752276 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTT-TTCCCAGATGTTTG
1 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCACAGATGTTTG
* * * * *
752329 TAAAAGATTTGATAACACATTC-CCCTTTCCTGTGGTTTCTGTACAGATGTTTG
1 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCACAGATGTTTG
*
752382 TAAAAACATTTGACAATACATTCATCC
1 T-AAAACATTTGACAACACATTCATCC
752409 AACTGAAACT
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
52 59 0.38
53 43 0.28
54 52 0.33
55 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (54 bp):
TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCACAGATGTTTG
Found at i:752298 original size:106 final size:106
Alignment explanation
Indices: 752170--752408 Score: 372
Period size: 106 Copynumber: 2.2 Consensus size: 106
752160 AACTGGTTCA
*
752170 TAAAACATTTGACAGCACATTCATCCTTTCATGTGGCTTCTGCCCAGAGGTTCGTAAAACATTTG
1 TAAAACATTTGACAACACATTCATCCTTTCATGTGGCTT-TGCCCAGAGGTTCGTAAAACATTTG
*
752235 ACAACATATT-CCCTTTCCTGTGGTTTCTGTACAGATGTTTG
65 ACAACACATTCCCCTTTCCTGTGGTTTCTGTACAGATGTTTG
* * * * *
752276 TAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTTTCCCAGATGTTTGTAAAAGATTTGA
1 TAAAACATTTGACAACACATTCATCCTTTCATGTGGCTTTGCCCAGAGGTTCGTAAAACATTTGA
*
752341 TAACACATTCCCCTTTCCTGTGGTTTCTGTACAGATGTTTG
66 CAACACATTCCCCTTTCCTGTGGTTTCTGTACAGATGTTTG
*
752382 TAAAAACATTTGACAATACATTCATCC
1 T-AAAACATTTGACAACACATTCATCC
752409 AACTGAAACT
Statistics
Matches: 122, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
105 29 0.24
106 69 0.57
107 24 0.20
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (106 bp):
TAAAACATTTGACAACACATTCATCCTTTCATGTGGCTTTGCCCAGAGGTTCGTAAAACATTTGA
CAACACATTCCCCTTTCCTGTGGTTTCTGTACAGATGTTTG
Found at i:752631 original size:75 final size:75
Alignment explanation
Indices: 752501--752678 Score: 266
Period size: 75 Copynumber: 2.4 Consensus size: 75
752491 TTGAGATGAT
* ** * * *
752501 ATGGGCCTTCAGCATGCCCCAACATTTATTGATACAGACGTTCAAAATGTGCCAACATTCCTGAT
1 ATGGGCTTTCAGCATGCCCCAACATTTGCTAATACAGACGTTCAAAATGCGCCAACATTCATGAT
752566 TCTGATTGAA
66 TCTGATTGAA
* * *
752576 ATGTGCTTTCAGCATGCCCCAACATTTGCTAATATAGACGTTTAAAATGCGCCAACATTCATGAT
1 ATGGGCTTTCAGCATGCCCCAACATTTGCTAATACAGACGTTCAAAATGCGCCAACATTCATGAT
752641 TCTGATTGAA
66 TCTGATTGAA
*
752651 ATGGGCTTTCAACATGCCCCAACATTTG
1 ATGGGCTTTCAGCATGCCCCAACATTTG
752679 TTTTTTTATT
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 92 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (75 bp):
ATGGGCTTTCAGCATGCCCCAACATTTGCTAATACAGACGTTCAAAATGCGCCAACATTCATGAT
TCTGATTGAA
Found at i:756660 original size:12 final size:12
Alignment explanation
Indices: 756643--756675 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
756633 GCAAATATAA
756643 AATGAAAATGTG
1 AATGAAAATGTG
756655 AATGAAAATGTG
1 AATGAAAATGTG
756667 AATGAAAAT
1 AATGAAAAT
756676 ATAAAAATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (12 bp):
AATGAAAATGTG
Found at i:756701 original size:38 final size:38
Alignment explanation
Indices: 756631--756714 Score: 102
Period size: 38 Copynumber: 2.2 Consensus size: 38
756621 CAATGTAAAG
*
756631 ATGC-AAATATAAAATGAAAATGTGAATGAAAATGTGA
1 ATGCAAAATATAAAATGAAAATGTGAATGAAAATATGA
* *
756668 ATG-AAAATATAAAAATGCAAAT-TTAATGAAAAATATGA
1 ATGCAAAATAT-AAAATGAAAATGTGAATG-AAAATATGA
756706 ATGCAAAAT
1 ATGCAAAAT
756715 GCAAATGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
37 14 0.35
38 21 0.52
39 5 0.12
ACGTcount: A:0.57, C:0.04, G:0.14, T:0.25
Consensus pattern (38 bp):
ATGCAAAATATAAAATGAAAATGTGAATGAAAATATGA
Found at i:757090 original size:15 final size:16
Alignment explanation
Indices: 757060--757092 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
757050 AATGAAGTAA
*
757060 ATAAATATATATATTT
1 ATAAATATAGATATTT
757076 ATAAATA-AGATATTT
1 ATAAATATAGATATTT
757091 AT
1 AT
757093 TTATTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
ATAAATATAGATATTT
Found at i:757093 original size:19 final size:20
Alignment explanation
Indices: 757057--757096 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
757047 AAAAATGAAG
757057 TAAATAAATATATATATTTA
1 TAAATAAATATATATATTTA
757077 TAAATAAGATAT-T-TATTTA
1 TAAATAA-ATATATATATTTA
757096 T
1 T
757097 TTTTTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 8 0.42
21 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAAATAAATATATATATTTA
Found at i:757183 original size:2 final size:2
Alignment explanation
Indices: 757176--757204 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
757166 AAATATTATT
757176 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
757205 GACTAAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:762216 original size:18 final size:18
Alignment explanation
Indices: 762193--762249 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
762183 GATACAAAAC
*
762193 AACTGAA-TTTATATTAGA
1 AACTGAACTTAAT-TTAGA
762211 AACTGAACTTAATTTAGA
1 AACTGAACTTAATTTAGA
*
762229 AACTGAACTTAATTTAAA
1 AACTGAACTTAATTTAGA
762247 AAC
1 AAC
762250 CATATTGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 32 0.89
19 4 0.11
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (18 bp):
AACTGAACTTAATTTAGA
Found at i:766263 original size:108 final size:108
Alignment explanation
Indices: 766074--766289 Score: 423
Period size: 108 Copynumber: 2.0 Consensus size: 108
766064 AATTTTTTAT
*
766074 TCAATCATATTATTTTAATATTTTACCGAATTTTATCGCTTGATAGCAGGTAATACAAGCTTTGG
1 TCAATCATATTATTTTAATATTTTACCGAATTTTATCGCTTAATAGCAGGTAATACAAGCTTTGG
766139 ATCAAAAATATGAAACCCATAAAAACATCAATCTTGGGGTCAA
66 ATCAAAAATATGAAACCCATAAAAACATCAATCTTGGGGTCAA
766182 TCAATCATATTATTTTAATATTTTACCGAATTTTATCGCTTAATAGCAGGTAATACAAGCTTTGG
1 TCAATCATATTATTTTAATATTTTACCGAATTTTATCGCTTAATAGCAGGTAATACAAGCTTTGG
766247 ATCAAAAATATGAAACCCATAAAAACATCAATCTTGGGGTCAA
66 ATCAAAAATATGAAACCCATAAAAACATCAATCTTGGGGTCAA
766290 CTATTCATTT
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.33
Consensus pattern (108 bp):
TCAATCATATTATTTTAATATTTTACCGAATTTTATCGCTTAATAGCAGGTAATACAAGCTTTGG
ATCAAAAATATGAAACCCATAAAAACATCAATCTTGGGGTCAA
Found at i:770270 original size:6 final size:6
Alignment explanation
Indices: 770259--770287 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
770249 CTTAATTACG
770259 AAAATT AAAATT AAAATT AAAATT AAAAT
1 AAAATT AAAATT AAAATT AAAATT AAAAT
770288 ACTTGATTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Done.