Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007790.1 Hibiscus syriacus cultivar Beakdansim tig00110076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2956777
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 11
Found at i:1718663 original size:36 final size:36
Alignment explanation
Indices: 1718617--1718692 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
1718607 TGCATTATTG
**
1718617 GCATGAAAGGATGTTAAAATAATAATGCATATGGGT
1 GCATGAAAGGATGCCAAAATAATAATGCATATGGGT
1718653 GCATGAAAGGATGCCAAAATAATAATGCATATGGGT
1 GCATGAAAGGATGCCAAAATAATAATGCATATGGGT
1718689 GCAT
1 GCAT
1718693 TATCGGCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.41, C:0.09, G:0.25, T:0.25
Consensus pattern (36 bp):
GCATGAAAGGATGCCAAAATAATAATGCATATGGGT
Found at i:1737185 original size:21 final size:22
Alignment explanation
Indices: 1737147--1737202 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
1737137 AATTGAAGAG
* * *
1737147 AGAATATCAAGAAGAAAGGAGT
1 AGAAAATCAAGAACAAAGGAAT
*
1737169 A-AAAATCAATAACAAAGGAAT
1 AGAAAATCAAGAACAAAGGAAT
*
1737190 AGAAAATGAAGAA
1 AGAAAATCAAGAA
1737203 GAAGAGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.62, C:0.05, G:0.20, T:0.12
Consensus pattern (22 bp):
AGAAAATCAAGAACAAAGGAAT
Found at i:1749729 original size:21 final size:19
Alignment explanation
Indices: 1749691--1749736 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
1749681 AATTAATCCT
1749691 ACTAAGTATTAAAGCTAAGA
1 ACTAA-TATTAAAGCTAAGA
1749711 ACTAATATTAAGGAGCTAAGA
1 ACTAATATTAA--AGCTAAGA
1749732 A-TAAT
1 ACTAAT
1749737 GATTCAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (19 bp):
ACTAATATTAAAGCTAAGA
Found at i:1761407 original size:90 final size:90
Alignment explanation
Indices: 1761260--1761449 Score: 371
Period size: 90 Copynumber: 2.1 Consensus size: 90
1761250 TTACACTAAC
1761260 ACTTCTTATTGTGTTGATGCACCATCTTAATCAGACTAATCAGGAGGATTATGATTAACTATATT
1 ACTTCTTATTGTGTTGATGCACCATCTTAATCAGACTAATCAGGAGGATTATGATTAACTATATT
1761325 ATTTCCACTATGCACCTATTCTCAA
66 ATTTCCACTATGCACCTATTCTCAA
1761350 ACTTCTTATTGTGTTGATGCACCATCTTAATCAGACTAATCAGGAGGATTATGATTAACTATATT
1 ACTTCTTATTGTGTTGATGCACCATCTTAATCAGACTAATCAGGAGGATTATGATTAACTATATT
1761415 ATTTCCACTATGCACCTATTCTCAA
66 ATTTCCACTATGCACCTATTCTCAA
*
1761440 ACCTCTTATT
1 ACTTCTTATT
1761450 CGATCACTTA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 99 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (90 bp):
ACTTCTTATTGTGTTGATGCACCATCTTAATCAGACTAATCAGGAGGATTATGATTAACTATATT
ATTTCCACTATGCACCTATTCTCAA
Found at i:1763232 original size:20 final size:21
Alignment explanation
Indices: 1763187--1763245 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
1763177 CTCAATAGTG
1763187 AAGGGATCGATCCTTTTTGAA
1 AAGGGATCGATCCTTTTTGAA
*
1763208 AAGGGATCGACCCTTTTTG-A
1 AAGGGATCGATCCTTTTTGAA
* *
1763228 GAGGGATCAATCCTTTTT
1 AAGGGATCGATCCTTTTT
1763246 CGTGCGGGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 16 0.47
21 18 0.53
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
AAGGGATCGATCCTTTTTGAA
Found at i:1770478 original size:21 final size:21
Alignment explanation
Indices: 1770439--1770477 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1770429 GCCCTACAAT
1770439 AAAGGGATCGATCCATTTTGA
1 AAAGGGATCGATCCATTTTGA
1770460 AAAGGGATCGAT-CATTTT
1 AAAGGGATCGATCCATTTT
1770478 TCACGGGGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (21 bp):
AAAGGGATCGATCCATTTTGA
Found at i:1770557 original size:21 final size:21
Alignment explanation
Indices: 1770533--1770585 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
1770523 TCTTTAGGCC
* *
1770533 AAGGGATCGATGTTTTCTCCT
1 AAGGGATCAATGCTTTCTCCT
1770554 AAGGGATCAATGCTTTCTCCT
1 AAGGGATCAATGCTTTCTCCT
1770575 AAGGGATCAAT
1 AAGGGATCAAT
1770586 CATTTTATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (21 bp):
AAGGGATCAATGCTTTCTCCT
Found at i:1772537 original size:28 final size:28
Alignment explanation
Indices: 1772465--1772529 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
1772455 GCACAATATT
* * *
1772465 CACTCAAAAGTACCTCATCAGTAATCTA
1 CACTCGAAAGTGCCTCAACAGTAATCTA
*
1772493 CACTCGAAAGTGCCTCAACAGTAATCTG
1 CACTCGAAAGTGCCTCAACAGTAATCTA
1772521 CACTCGAAA
1 CACTCGAAA
1772530 TTGTCTCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.37, C:0.29, G:0.12, T:0.22
Consensus pattern (28 bp):
CACTCGAAAGTGCCTCAACAGTAATCTA
Found at i:1775666 original size:28 final size:28
Alignment explanation
Indices: 1775634--1775688 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
1775624 ATGTTACCTA
* *
1775634 TGGTGGAAATTATCTACGAGGCACTTTC
1 TGGTGCAAATTATATACGAGGCACTTTC
* *
1775662 TGGTGCAATTTATATACGAGGTACTTT
1 TGGTGCAAATTATATACGAGGCACTTT
1775689 TCAGTGCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (28 bp):
TGGTGCAAATTATATACGAGGCACTTTC
Found at i:1784499 original size:18 final size:17
Alignment explanation
Indices: 1784459--1784519 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
1784449 TCTAAAAGCA
* * *
1784459 TAAATGAACTACTTCCC
1 TAAATGAACTACATGCT
*
1784476 TAAATGAACTAGATGACT
1 TAAATGAACTACATG-CT
1784494 TAAATGCAA-TACATGCT
1 TAAATG-AACTACATGCT
1784511 TAAATGAAC
1 TAAATGAAC
1784520 AACACACTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
16 2 0.06
17 20 0.56
18 12 0.33
19 2 0.06
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (17 bp):
TAAATGAACTACATGCT
Found at i:1792322 original size:36 final size:36
Alignment explanation
Indices: 1792275--1792345 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
1792265 ACATAAAAGA
1792275 GTTAGTCACGAAGATATCAA-GTTGAATCATGACTTT
1 GTTAGTCACGAAGATAT-AATGTTGAATCATGACTTT
1792311 GTTAGTCACGAAGATATAATGTTGAATCATGACTT
1 GTTAGTCACGAAGATATAATGTTGAATCATGACTT
1792346 ATTGTAACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 2 0.06
36 32 0.94
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (36 bp):
GTTAGTCACGAAGATATAATGTTGAATCATGACTTT
Found at i:1810352 original size:180 final size:181
Alignment explanation
Indices: 1810049--1810374 Score: 423
Period size: 180 Copynumber: 1.8 Consensus size: 181
1810039 TTGTTTATAA
* *
1810049 TTATATATTTTAATTATAGTGACCAAATGTATAGTCACAAATGATTATCTCCAATTTTTTGTACA
1 TTATATATTTTAATTATAGTGACAAAATATATAGTCACAAATGATTATCTCCAATTTTTTGTACA
** *
1810114 AAAACAAAATCATATAGTGACATGTTTTGTAACTATAAGCTATAATTATTGTTACAAAAAA-AGT
66 AAAACAAAATCATATAGTGACAAATTTTGTAACTATAAGCTATAATTATTATTACAAAAAATA-T
* *
1810178 TGTCACGACAAATAATGAGATTCAAGTTTTTAGTAAAAACCAGTTTTTGTCG
130 TGTCACAAAAAATAATGAGATTCAAGTTTTTAGTAAAAACCAGTTTTTGTCG
* * *
1810230 TTATATGTTTTAATTATAGTGACAAAATATATTGTCATAAA-GATT-TCCCTCCATATTTTTTGT
1 TTATATATTTTAATTATAGTGACAAAATATATAGTCACAAATGATTAT--CTCCA-ATTTTTTGT
* * * *
1810293 GC-CAAA-AAAGTCATATAGTGACAAATTTTGTAACTATAAG-TGTTAA-TACTTATTACAAAAA
63 ACAAAAACAAAATCATATAGTGACAAATTTTGTAACTATAAGCT-ATAATTA-TTATTACAAAAA
1810354 ATATTGTCACAAAAAATAATG
126 ATATTGTCACAAAAAATAATG
1810375 TTATTCATGC
Statistics
Matches: 125, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
179 4 0.03
180 66 0.53
181 45 0.36
182 10 0.08
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (181 bp):
TTATATATTTTAATTATAGTGACAAAATATATAGTCACAAATGATTATCTCCAATTTTTTGTACA
AAAACAAAATCATATAGTGACAAATTTTGTAACTATAAGCTATAATTATTATTACAAAAAATATT
GTCACAAAAAATAATGAGATTCAAGTTTTTAGTAAAAACCAGTTTTTGTCG
Found at i:1810926 original size:22 final size:21
Alignment explanation
Indices: 1810896--1810936 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
1810886 TTTCAAAAAG
1810896 TTATATTTATAAGTT-TTGTAA
1 TTATATTTAT-AGTTATTGTAA
1810917 TTATAATTTATAGTTATTGT
1 TTAT-ATTTATAGTTATTGT
1810937 TATAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (21 bp):
TTATATTTATAGTTATTGTAA
Found at i:1811606 original size:136 final size:136
Alignment explanation
Indices: 1811415--1811688 Score: 503
Period size: 136 Copynumber: 2.0 Consensus size: 136
1811405 TCAATATGCC
*
1811415 TAATTGAACAAATCAAAAGTAATTTCATCTAGAAGCATAGAAACAATCATAATTAATTAAACTAA
1 TAATTGAACAAATCAAAAGTAATTTCATCTAGAAGCATACAAACAATCATAATTAATTAAACTAA
*
1811480 ATAATATATTTTAATAAAATAATTGTCTAAAGTAAAATTATAAGTAATCCTCCACCTCCTGTTCG
66 ATAATATATTTTAATAAAATAATTGTCTAAAGTAAAATTATAAGTAATCCTCCACCTCATGTTCG
1811545 TCTTCA
131 TCTTCA
* *
1811551 TAATTGAACAAATCAAAAGTAATTTCATTTAGAAGCATACAAACAATCGTAATTAATTAAACTAA
1 TAATTGAACAAATCAAAAGTAATTTCATCTAGAAGCATACAAACAATCATAATTAATTAAACTAA
*
1811616 ATAATATATTTTAATAAAATAATTGTCTAAAGTAAAATTATAAGTAATCCTCCTCCTCATGTTCG
66 ATAATATATTTTAATAAAATAATTGTCTAAAGTAAAATTATAAGTAATCCTCCACCTCATGTTCG
1811681 TCTTCA
131 TCTTCA
1811687 TA
1 TA
1811689 TATTTGGGTT
Statistics
Matches: 133, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 133 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (136 bp):
TAATTGAACAAATCAAAAGTAATTTCATCTAGAAGCATACAAACAATCATAATTAATTAAACTAA
ATAATATATTTTAATAAAATAATTGTCTAAAGTAAAATTATAAGTAATCCTCCACCTCATGTTCG
TCTTCA
Found at i:1815076 original size:22 final size:22
Alignment explanation
Indices: 1815049--1815091 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1815039 TAAAATATAT
*
1815049 TTTTAGTTATCATAACAAATTA
1 TTTTAGTTATAATAACAAATTA
1815071 TTTTAGTTATAATAACAAATT
1 TTTTAGTTATAATAACAAATT
1815092 TAAATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.47
Consensus pattern (22 bp):
TTTTAGTTATAATAACAAATTA
Found at i:1815164 original size:23 final size:23
Alignment explanation
Indices: 1815137--1815181 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1815127 ATGATAATTT
*
1815137 ATTTAGACAAAATAACAAATTAA
1 ATTTAGACAAAATAAAAAATTAA
**
1815160 ATTTAGTTAAAATAAAAAATTA
1 ATTTAGACAAAATAAAAAATTA
1815182 TGTTAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
ATTTAGACAAAATAAAAAATTAA
Found at i:1815489 original size:195 final size:194
Alignment explanation
Indices: 1815137--1815532 Score: 512
Period size: 195 Copynumber: 2.0 Consensus size: 194
1815127 ATGATAATTT
* * * * *
1815137 ATTTAGACAAAATAACAAATTAAATTTAGTTAAAATAAAAAATTATGTTAAATTTATTTAGTCAA
1 ATTTAGTCAAAATAACAAATTAAATTTAATCAAAATAAAAAATTATGTCAAATTTATTTAGCCAA
*** * * *
1815202 AATATTTTGTCAAAATGTTTTTTGACAAATTTATTTAATCAAAATAATAATTTATAATAAATATT
66 AATATTTTGTCAAAATAAATTGTGACAAATTTATTTAATCAAAATAACAATTTATAACAAATATT
*
1815267 CATTTCTCAATATAAAAAATTGTGACAAGTAATATT-CTTTCACAATAACAAATTGTAACAAAAT
131 CATTTCTCAATATAAAAAATTGTGACAAATAATATTCCTTT-ACAATAACAAATTGTAA-AAAAT
1815331 G
194 G
* * * * * *
1815332 ATTTAGTCATAATAACACATTAAATTTAATCAAAGTAAAAAGTTATGTCAAATTTCTTTAGCCAC
1 ATTTAGTCAAAATAACAAATTAAATTTAATCAAAATAAAAAATTATGTCAAATTTATTTAGCCAA
1815397 AATA-TTTGTCAAAATAAAAAATTGTGACAAATTTATTTAATCAAAATAACAATTTATAACAAAT
66 AATATTTTGTCAAAAT---AAATTGTGACAAATTTATTTAATCAAAATAACAATTTATAACAAAT
* * * *
1815461 ATT-GTTT-TCATTATAAAAATTTGTGACAAATAATATTCCTTTACAATAACAAATTGTAATAAA
128 ATTCATTTCTCAATATAAAAAATTGTGACAAATAATATTCCTTTACAATAACAAATTGTAAAAAA
*
1815524 TT
193 TG
1815526 ATTTAGT
1 ATTTAGT
1815533 TACAGTAAAA
Statistics
Matches: 174, Mismatches: 23, Indels: 9
0.84 0.11 0.04
Matches are distributed among these distances:
194 22 0.13
195 102 0.59
196 7 0.04
197 43 0.25
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (194 bp):
ATTTAGTCAAAATAACAAATTAAATTTAATCAAAATAAAAAATTATGTCAAATTTATTTAGCCAA
AATATTTTGTCAAAATAAATTGTGACAAATTTATTTAATCAAAATAACAATTTATAACAAATATT
CATTTCTCAATATAAAAAATTGTGACAAATAATATTCCTTTACAATAACAAATTGTAAAAAATG
Found at i:1815490 original size:31 final size:32
Alignment explanation
Indices: 1815399--1815497 Score: 94
Period size: 31 Copynumber: 3.1 Consensus size: 32
1815389 TTAGCCACAA
* *
1815399 TATTTGTCAAAATAAAAAATTGTGACAAAT-T
1 TATTTATCAAAATAAAAATTTGTGACAAATAT
* * *
1815430 TATTTAATCAAAATAACAATTTATAACAAATAT
1 TATTT-ATCAAAATAAAAATTTGTGACAAATAT
* ** *
1815463 TGTTT-TCATTATAAAAATTTGTGACAAATAA
1 TATTTATCAAAATAAAAATTTGTGACAAATAT
1815494 TATT
1 TATT
1815498 CCTTTACAAT
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
31 28 0.53
32 20 0.38
33 5 0.09
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.39
Consensus pattern (32 bp):
TATTTATCAAAATAAAAATTTGTGACAAATAT
Found at i:1816412 original size:65 final size:65
Alignment explanation
Indices: 1816327--1816479 Score: 184
Period size: 65 Copynumber: 2.4 Consensus size: 65
1816317 CTAGGGGTGA
* * * **
1816327 ATCGGTACACTAATTACATTCGATGTTTCA-AACAAGCCTGGAGTGCATCGATGCATGG-TCTGT
1 ATCGGTACACAAAATGCATTCGATGTTTCAGAA-AAGCCAAGAGTGCATCGATGCATGGCT-TGT
1816390 AC
64 AC
* ** *
1816392 ATCGGTACACAAAATGCATTCGATGTTTCAGAATATTCAAGAGTGCATCGATGCATGGCTTGTGC
1 ATCGGTACACAAAATGCATTCGATGTTTCAGAAAAGCCAAGAGTGCATCGATGCATGGCTTGTAC
*
1816457 ATCGGTACCCAAAATGCATTCGA
1 ATCGGTACACAAAATGCATTCGA
1816480 AATGGGTGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
65 73 0.96
66 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (65 bp):
ATCGGTACACAAAATGCATTCGATGTTTCAGAAAAGCCAAGAGTGCATCGATGCATGGCTTGTAC
Found at i:1821115 original size:25 final size:25
Alignment explanation
Indices: 1821080--1821133 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
1821070 AACGTGATGA
*
1821080 ACTTTTTTAATGCTTCATCTTTAGT
1 ACTTTTCTAATGCTTCATCTTTAGT
1821105 ACTTTTCTAATGCTTCATCTTTAGT
1 ACTTTTCTAATGCTTCATCTTTAGT
1821130 ACTT
1 ACTT
1821134 AAGAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.07, T:0.54
Consensus pattern (25 bp):
ACTTTTCTAATGCTTCATCTTTAGT
Found at i:1824388 original size:65 final size:66
Alignment explanation
Indices: 1824245--1824402 Score: 223
Period size: 65 Copynumber: 2.4 Consensus size: 66
1824235 TACACTAGGG
* * * * *
1824245 GTGCATCGGTACACTAATTACATTCGATGTTTCAAACAATGTCAGGAGTGCATTAATGCATGGTC
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAACAATGTCAAGAGTGCATCAATGCATGGTC
1824310 T
66 T
*
1824311 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAA-ATAT-TCAAGAGTGCATCGATGCATGG-
1 GTGCATCGGTACACAAAATGCATTCGATGTTTCAAACA-ATGTCAAGAGTGCATCAATGCATGGT
1824373 CTT
65 C-T
1824376 GTGCATCGGTACACAAAATGCATTCGA
1 GTGCATCGGTACACAAAATGCATTCGA
1824403 AATGGGTTGT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
64 1 0.01
65 48 0.57
66 35 0.42
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (66 bp):
GTGCATCGGTACACAAAATGCATTCGATGTTTCAAACAATGTCAAGAGTGCATCAATGCATGGTC
T
Found at i:1831408 original size:19 final size:20
Alignment explanation
Indices: 1831384--1831429 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
1831374 CAAAGTAACC
1831384 CAATTTC-ACACTCTAACAT
1 CAATTTCAACACTCTAACAT
*
1831403 CAATTTCAACATTCTAACAT
1 CAATTTCAACACTCTAACAT
*
1831423 TAATTTC
1 CAATTTC
1831430 CAGCATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (20 bp):
CAATTTCAACACTCTAACAT
Found at i:1834665 original size:24 final size:24
Alignment explanation
Indices: 1834590--1834668 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 24
1834580 AGTGTCTATC
* * *
1834590 GTACTCCTGTATTAGTCCATACAT
1 GTACTCCTGTATTAGTACATTCGT
* * * * * *
1834614 GCACTCCTATATTAATACCTTTGG
1 GTACTCCTGTATTAGTACATTCGT
1834638 GTACTCCTGTATTAGTACATTCGT
1 GTACTCCTGTATTAGTACATTCGT
1834662 GTACTCC
1 GTACTCC
1834669 CAGCACTATA
Statistics
Matches: 40, Mismatches: 15, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (24 bp):
GTACTCCTGTATTAGTACATTCGT
Found at i:1835798 original size:2 final size:2
Alignment explanation
Indices: 1835793--1835833 Score: 64
Period size: 2 Copynumber: 20.0 Consensus size: 2
1835783 ATTGAAGTTA
*
1835793 AT AT AT AT AT TT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1835834 GTTGGGACCG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 35 0.97
3 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1836626 original size:65 final size:63
Alignment explanation
Indices: 1836507--1836716 Score: 185
Period size: 65 Copynumber: 3.3 Consensus size: 63
1836497 TTTTTCAGAG
* * * * ** *
1836507 TGATGCACCGATGCACCAATCCATGCATCGATGCACCATGAATTAAATT-GAACATCGAATGCAT
1 TGATGCATCGATGCA-CAA-CCATGCATCGATACACTATGGA-TATTTTAAAACATCGAATGCAT
1836571 T
63 T
*
1836572 TCATGCATCGATGCACATACCATGCA-CGGATACACTGA-GGAT-TTTATGAAAACATCGAATGC
1 TGATGCATCGATGCACA-ACCATGCATC-GATACACT-ATGGATATTT-T-AAAACATCGAATGC
1836634 ATT
61 ATT
* * * * * *
1836637 TGATGCATCGATCCACCAGCCATGTATCGATGCACTATGGCTATTTTAAAACATCGAATGCACT
1 TGATGCATCGATGCA-CAACCATGCATCGATACACTATGGATATTTTAAAACATCGAATGCATT
1836701 TGATGCATCGATGCAC
1 TGATGCATCGATGCAC
1836717 TCTTAGTGCA
Statistics
Matches: 119, Mismatches: 16, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 48 0.40
65 60 0.50
66 6 0.05
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (63 bp):
TGATGCATCGATGCACAACCATGCATCGATACACTATGGATATTTTAAAACATCGAATGCATT
Found at i:1836716 original size:17 final size:19
Alignment explanation
Indices: 1836688--1836736 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1836678 TATTTTAAAA
1836688 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
1836706 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
1836725 CACCGATGCACT
1 CATCGATGCACT
1836737 GAGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:1842427 original size:24 final size:24
Alignment explanation
Indices: 1842400--1842480 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
1842390 ACACTTAATA
1842400 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCATCCCTTTGAAT
* *
1842424 GTGCATCGATTCAT-CATGTTG-A-
1 GTGCATCGATGCATCCCT-TTGAAT
*
1842446 -TGCACCGATGCA-CGCC-TTGAAT
1 GTGCATCGATGCATC-CCTTTGAAT
1842468 GTGCATCGATGCA
1 GTGCATCGATGCA
1842481 CGGGGTCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
20 3 0.07
21 11 0.24
22 1 0.02
23 14 0.31
24 16 0.36
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (24 bp):
GTGCATCGATGCATCCCTTTGAAT
Found at i:1843892 original size:21 final size:21
Alignment explanation
Indices: 1843850--1843893 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1843840 ATGCCGGGAG
*
1843850 CTAGCTCTTCACGAGCTTCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
1843871 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
1843892 CT
1 CT
1843894 CCTCCTACGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.14, T:0.36
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:1843977 original size:63 final size:63
Alignment explanation
Indices: 1843878--1844004 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
1843868 CTCCTAGCTC
1843878 TTCTCGTGCTCCTCCTCCTCCTACGCCACCGGTTGCTGACGATGATCCTGAGTTTCAACAACT
1 TTCTCGTGCTCCTCCTCCTCCTACGCCACCGGTTGCTGACGATGATCCTGAGTTTCAACAACT
*
1843941 TTCTCGTGCTCCTCCTCCTCCTATGCCACCGGTTGCTGACGATGATCCTGAGTTTCAACAACT
1 TTCTCGTGCTCCTCCTCCTCCTACGCCACCGGTTGCTGACGATGATCCTGAGTTTCAACAACT
1844004 T
1 T
1844005 ATGCAAGATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.16, C:0.35, G:0.17, T:0.31
Consensus pattern (63 bp):
TTCTCGTGCTCCTCCTCCTCCTACGCCACCGGTTGCTGACGATGATCCTGAGTTTCAACAACT
Found at i:1844374 original size:2 final size:2
Alignment explanation
Indices: 1844367--1844414 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
1844357 TTTGAACTTA
1844367 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1844409 AT AT AT
1 AT AT AT
1844415 TTGGTTTGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1844841 original size:21 final size:20
Alignment explanation
Indices: 1844808--1844848 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
1844798 ATAACAAATT
1844808 ATTTTAAATGATTTT-TAAG
1 ATTTTAAATGATTTTCTAAG
1844827 ATTTTACACATGATTTTCTAAG
1 ATTTTA-A-ATGATTTTCTAAG
1844849 TATATTCGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 8 0.42
22 4 0.21
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (20 bp):
ATTTTAAATGATTTTCTAAG
Found at i:1847455 original size:26 final size:26
Alignment explanation
Indices: 1847408--1847463 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
1847398 ATAATTTAAT
1847408 TTTTTATAGTTTTAAAAATAT-ATATA
1 TTTTTATAGTTTTAAAAATATAAT-TA
*
1847434 TTTTTATA-TTTTAAAATTTATAATTA
1 TTTTTATAGTTTTAAAA-ATATAATTA
1847460 TTTT
1 TTTT
1847464 AAAATTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 8 0.30
26 17 0.63
27 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTTTATAGTTTTAAAAATATAATTA
Found at i:1847463 original size:25 final size:25
Alignment explanation
Indices: 1847404--1847464 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 25
1847394 CATTATAATT
1847404 TAATT-TTTTATAGTTTTAAAAATA
1 TAATTATTTTATAGTTTTAAAAATA
*
1847428 T-ATATATTTTTATA-TTTTAAAATTTA
1 TAAT-TA-TTTTATAGTTTTAAAA-ATA
1847454 TAATTATTTTA
1 TAATTATTTTA
1847465 AAATTTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 13 0.42
26 12 0.39
27 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TAATTATTTTATAGTTTTAAAAATA
Found at i:1849379 original size:17 final size:17
Alignment explanation
Indices: 1849354--1849402 Score: 80
Period size: 18 Copynumber: 2.8 Consensus size: 17
1849344 TCATCGTTTC
*
1849354 TTTGTCTTTTTTTCATA
1 TTTGGCTTTTTTTCATA
1849371 TTTGGCTTTTTTTTCATA
1 TTTGGC-TTTTTTTCATA
1849389 TTTGGCTTTTTTTC
1 TTTGGCTTTTTTTC
1849403 TGTAATTAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 13 0.43
18 17 0.57
ACGTcount: A:0.08, C:0.12, G:0.10, T:0.69
Consensus pattern (17 bp):
TTTGGCTTTTTTTCATA
Found at i:1849383 original size:18 final size:18
Alignment explanation
Indices: 1849360--1849401 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
1849350 TTTCTTTGTC
1849360 TTTTTTTCATATTTGGCT
1 TTTTTTTCATATTTGGCT
1849378 TTTTTTTCATATTTGGCT
1 TTTTTTTCATATTTGGCT
1849396 TTTTTT
1 TTTTTT
1849402 CTGTAATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (18 bp):
TTTTTTTCATATTTGGCT
Found at i:1853850 original size:35 final size:35
Alignment explanation
Indices: 1853804--1853875 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
1853794 GAACAACATT
1853804 ACAAAGCTTGTAGAATCATTCATTCATCATCTCTA
1 ACAAAGCTTGTAGAATCATTCATTCATCATCTCTA
1853839 ACAAAGCTTGTAGAATCATTCATTCATCATCTCTA
1 ACAAAGCTTGTAGAATCATTCATTCATCATCTCTA
1853874 AC
1 AC
1853876 CATTGTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (35 bp):
ACAAAGCTTGTAGAATCATTCATTCATCATCTCTA
Found at i:1856798 original size:20 final size:20
Alignment explanation
Indices: 1856773--1856815 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
1856763 CATACTGCCA
1856773 CCCCTT-ACAGTATCGATACT
1 CCCCTTGACAGT-TCGATACT
*
1856793 CCCCTTGGCAGTTCGATACT
1 CCCCTTGACAGTTCGATACT
1856813 CCC
1 CCC
1856816 TCCTAAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.19, C:0.40, G:0.14, T:0.28
Consensus pattern (20 bp):
CCCCTTGACAGTTCGATACT
Found at i:1859020 original size:16 final size:16
Alignment explanation
Indices: 1858999--1859030 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1858989 TGTCTTGGAG
1858999 CCTAAGAGACTACCCA
1 CCTAAGAGACTACCCA
*
1859015 CCTAAGAGCCTACCCA
1 CCTAAGAGACTACCCA
1859031 AGGTCACCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.41, G:0.12, T:0.12
Consensus pattern (16 bp):
CCTAAGAGACTACCCA
Found at i:1861040 original size:13 final size:13
Alignment explanation
Indices: 1861022--1861047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1861012 TTTGACTTTT
1861022 TGGTCAAAGTCAA
1 TGGTCAAAGTCAA
1861035 TGGTCAAAGTCAA
1 TGGTCAAAGTCAA
1861048 AGTCAACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
TGGTCAAAGTCAA
Found at i:1861089 original size:14 final size:14
Alignment explanation
Indices: 1861070--1861108 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
1861060 TAAAAATAAA
1861070 CGGGTTGACTCAAT
1 CGGGTTGACTCAAT
*
1861084 CGGGTTGACTCAGT
1 CGGGTTGACTCAAT
*
1861098 -GAGTTGACTCA
1 CGGGTTGACTCA
1861109 TCATGACAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (14 bp):
CGGGTTGACTCAAT
Found at i:1866899 original size:47 final size:47
Alignment explanation
Indices: 1866836--1866949 Score: 183
Period size: 47 Copynumber: 2.4 Consensus size: 47
1866826 GTAAGTATGC
*
1866836 AAATAATCTTACGAGCTTATGGAATTTAAATGGTAAGTATGTTGATA
1 AAATAAACTTACGAGCTTATGGAATTTAAATGGTAAGTATGTTGATA
* * * *
1866883 AAATAAGCTTAAGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAACTTACGAGCTTATGGAATTTAAATGGTAAGTATGTTGATA
1866930 AAATAAACTTACGAGCTTAT
1 AAATAAACTTACGAGCTTAT
1866950 AAGATAAATG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 61 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.35
Consensus pattern (47 bp):
AAATAAACTTACGAGCTTATGGAATTTAAATGGTAAGTATGTTGATA
Found at i:1884973 original size:29 final size:27
Alignment explanation
Indices: 1884931--1884988 Score: 71
Period size: 29 Copynumber: 2.1 Consensus size: 27
1884921 TTTTATCTTC
*
1884931 ATTTATTTTATTTTATTCAATTTCATTTT
1 ATTTATTTTATTTTATCCAA-TT-ATTTT
* *
1884960 ATTTTTTTTGTTTTATCCAATTATTTT
1 ATTTATTTTATTTTATCCAATTATTTT
1884987 AT
1 AT
1884989 GTTTATTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 7 0.27
28 2 0.08
29 17 0.65
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (27 bp):
ATTTATTTTATTTTATCCAATTATTTT
Found at i:1884988 original size:5 final size:5
Alignment explanation
Indices: 1884899--1884975 Score: 59
Period size: 5 Copynumber: 15.2 Consensus size: 5
1884889 ACTTTACCTT
* *
1884899 TTTTA TTCTTA TTTTA TATATA TTTTA TCTTCA -TTTA TTTTA TTTTA
1 TTTTA TT-TTA TTTTA T-TTTA TTTTA T-TTTA TTTTA TTTTA TTTTA
** * *
1884946 TTCAA TTTCA TTTTA TTTT- TTTTG TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
1884976 CCAATTATTT
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
4 7 0.12
5 38 0.67
6 12 0.21
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.71
Consensus pattern (5 bp):
TTTTA
Found at i:1888019 original size:15 final size:14
Alignment explanation
Indices: 1887966--1888021 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 14
1887956 AGATTCAATC
*
1887966 AAAACAAAAAGGGCA
1 AAAACAAAAA-GGAA
1887981 AAAACATAAAA-GAA
1 AAAACA-AAAAGGAA
1887995 AAGAAGCAAAAAGGAA
1 AA-AA-CAAAAAGGAA
1888011 GAAAACAAAAA
1 -AAAACAAAAA
1888022 AAAACAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 4 0.11
15 18 0.51
16 11 0.31
17 2 0.06
ACGTcount: A:0.73, C:0.09, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAACAAAAAGGAA
Found at i:1888677 original size:22 final size:22
Alignment explanation
Indices: 1888645--1888699 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
1888635 GCTACCCCAT
*
1888645 CAAACCCTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
1888667 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
1888689 CAAACCTTTGA
1 CAAACCTTTGA
1888700 CCAAACACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.29, G:0.13, T:0.22
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:1889898 original size:106 final size:106
Alignment explanation
Indices: 1889557--1894401 Score: 6898
Period size: 106 Copynumber: 45.7 Consensus size: 106
1889547 AACGAAGGGA
* * * *
1889557 CAATTTCAGTGCCAATTTTAACTTCACAATGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1889622 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1889663 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1889728 TTCACAACGAA-GGA-TGCTGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
1889767 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1889832 TTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1889873 CAATTTCAGAGCCAATTTCAACTTCATAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1889938 TTCACGACGAAGGGA-CG-TGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1889977 CAATTTCAGAGCCAATTTCAACATCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1890042 TTCACGACGAAGGGACCGCTAGTT-TGCAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGT-CAACAAACAACTTCC
* * *
1890083 CAATTTAAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1890148 TTAATGACGAAGGGACTGCTGGTTGTCAATAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * *
1890189 CAATTTCAGAGCCAATTTTAACTTCACAGCGAATGATATTGGACTCCAGACAACGTAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1890254 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
1890295 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1890360 TTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * **
1890401 TAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1890466 TTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * * *
1890507 TAATTTCGGAGCCGATTTCAACTTCACAGA-AAAAGATATTGGATTCCAGACAACGCAAGTTCAA
1 CAATTTCAGAGCCAATTTCAACTTCACA-ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAA
* * * *
1890571 CTTCACGATGAAGGGACCGCTGGTTGTCATCCAACAATTTCC
65 CTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* *
1890613 CAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1890678 TTCACGACGAAGGGACCGCTGGTTGTAAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1890719 CAATTTCATAGCCAATTTCAACTTCTCAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1890784 TTCACGACGACGGGACCGCTGGATGTCAACAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * *
1890825 CAATTTCAGAACTAATTTCAACTTCATAACGAAGGATATTGAACTCGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1890890 TTCACGACGAAGGGACCGCTGGTTGTTAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * *
1890931 CAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1890996 TTCACAATGAAGGGACGGCTGGTTGTCAACAAA-AATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * ** * * *
1891036 CGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGAACAATGCTACTTACT
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAACGC-A---A--
* * *
1891100 TGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTTTC
59 --G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* **
1891152 CAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1891217 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * *
1891258 CAATTTCAGA-TCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1891322 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * **
1891363 CAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATTCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1891428 TTCACGACGAAGGGACCACTGGTTGTCAATAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1891469 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1891534 TTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
1891575 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1891640 TTCACGATGAAGGGACCGCTGGTTGTCAACAAATAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1891681 CAATTTTAGAGCCAATTTCAACTT--CAACGAAGGATATTGGACT-CAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1891743 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
1891784 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1891849 TTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* *
1891890 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1891955 -TCATGACGAAGGGACTGCTGG-TGTCAATAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1891994 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1892059 TTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
1892100 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCCAAGTTCAA
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG-CAAGTTCAA
*
1892165 CTT--C-ACGAAGGGACCGCTGGTTGTCAACAAATAACTTCC
65 CTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
**
1892204 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1892269 TTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * ** * *
1892310 TAATTTCGGAGCCGATTTCAAC-TCACAGTGAAAGATA-TGGATTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1892373 TTCACGACGAAGGGACCGCT-GTTGTCAACCAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1892413 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1892478 TTCACGATGAAGGGACCGCTGGTTGT-AACAAACAACTT-C
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * *
1892517 CAATTTCATAGCCAATGTCAAATTCACAACGAAGGATATT-GACTCCCGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1892581 TTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1892622 CAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1892687 TTCACGACGAAGGGAACGCTGGTTGTTAAC-AACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * *
1892727 CAGTTTCAGAGCCAATTTCAACTTCAC-AC-AAAGATATTAGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1892790 TTCACAATGAAGGGA-CGGTGGTTGTCAACAAACAA-TT-C
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * ** * * *
1892828 CGATTCCAGAGCCAATTTCAACATCATGACGGATGATATTGGACTCGGAACATGCACTTACTTG-
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC----CA-G-AC-AAC--GC
* * * * *
1892892 GATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTTTC
57 AAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
** **
1892942 CAATTTTGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1893007 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * *
1893048 CAATTTCAGATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGACCACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1893113 TTCACGACGAAGGGACCGCTGGTTGTCAA-AAACAACTTTC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1893153 CAATTTCAGTGCCAATTT-AACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1893217 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1893258 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1893323 TTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1893364 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1893429 TTCACGATGAAGGGACCGCTGGTTGTCAACAAACAATTTTC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
** *
1893470 CAATTTTGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1893535 TTCACGATGAAGGGACCGCTGGTTGTAAACAAACAACTTCT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1893576 CAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1893641 TTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1893682 CAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1893747 TTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * *
1893788 CAGTTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1893853 TTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * ** * * *
1893894 CGATTCCAGAGCCATTTTCAACATCATGACGGAGGATATTGGACT-CGGAACAATGCTACTTACT
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAACGC-A---A--
* * * *
1893958 TGGATTTCAACTTCATGACGAAGGGACCGCTAGTTGTCAACAAACAATTTTC
59 --G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* **
1894010 CAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1894075 TTCACGACAAAGGGACCGCTGGTTGTCAATAAACAA-TTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
1894115 CAATTTCAGATCCAATTTC-ACTTCACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1894179 TTCACGTCGAAGGGACCGCTAGTTGTCAATAAACAACTTTC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
** * * *
1894220 CAATTTCACTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1894285 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
*
1894326 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1894391 TTCACAACGAA
66 TTCACGACGAA
1894402 AAAACTTCTC
Statistics
Matches: 4261, Mismatches: 409, Indels: 138
0.89 0.09 0.03
Matches are distributed among these distances:
101 23 0.01
102 16 0.00
103 238 0.06
104 631 0.15
105 444 0.10
106 2628 0.62
107 16 0.00
108 5 0.00
109 4 0.00
110 5 0.00
111 19 0.00
112 21 0.00
113 3 0.00
114 37 0.01
115 37 0.01
116 130 0.03
117 4 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
Found at i:1894580 original size:186 final size:189
Alignment explanation
Indices: 1894220--1894792 Score: 630
Period size: 186 Copynumber: 2.9 Consensus size: 189
1894210 AACAACTTTC
* * * * *
1894220 CAATTTCACTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCACAGCCAATTTCAACTTCACAACGAAGGA-ATTGGACTCCAAACAACGCAAGTTCAAC
* * *
1894285 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
65 TTCACGACGAAGCGACCACTGGTTGTCAACAAACAACTTCCCAATTTCA-AGCCAATTTCAACTT
*
1894350 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAAAAACTTCT
129 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAAAAACTTCT
*
1894411 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGG-ATTGGACTCCAAACAACGCAAGTTCAACT
1 CAATTTCACAGCCAATTTCAACTTCACAACGAAGGAATTGGACTCCAAACAACGCAAGTTCAACT
* * *
1894475 TCACGACGAAGCGACCACTGGTTGTCAACAAA-AACTTCTCAATTTC-AGTCAATTTCAACTTTA
66 TCACGACGAAGCGACCACTGGTTGTCAACAAACAACTTCCCAATTTCAAGCCAATTTCAACTTCA
* * * ***
1894538 CAACGAAGGATATTGGACTCCAGACAACGCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTTGT
131 CAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAA---AAAAC----T-T
*
1894603 CAACAAA
188 ---C--T
*
1894610 CAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCA
1 CAA-TT-TC-A---C--AGCCAATTTCAACTTCACAACGAAGGA-ATTGGACTCCAAACAACGCA
* * * *
1894675 AGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCCCAATTTCAAAGCCAAT
57 AGTTCAACTTCACGACGAAGCGACCACTGGTTGTCAACAAACAACTTCCCAATTTC-AAGCCAAT
** * * *
1894740 TTCAACTAAACAGCAAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCA
121 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA
1894793 TGACGAAGGG
Statistics
Matches: 322, Mismatches: 34, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
186 61 0.19
188 13 0.04
189 58 0.18
191 31 0.10
193 1 0.00
194 1 0.00
197 1 0.00
199 3 0.01
200 2 0.01
201 2 0.01
202 1 0.00
207 26 0.08
209 57 0.18
210 12 0.04
212 53 0.16
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (189 bp):
CAATTTCACAGCCAATTTCAACTTCACAACGAAGGAATTGGACTCCAAACAACGCAAGTTCAACT
TCACGACGAAGCGACCACTGGTTGTCAACAAACAACTTCCCAATTTCAAGCCAATTTCAACTTCA
CAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAAAAACTTCT
Found at i:1894667 original size:106 final size:106
Alignment explanation
Indices: 1894395--1899158 Score: 6882
Period size: 106 Copynumber: 44.9 Consensus size: 106
1894385 TTCAACTTCA
* * *
1894395 CAACGAAAAAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG--ATTGGACTCCAA
1 CAAC-AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG
* *
1894458 ACAACGCAAGTTCAACTTCACGACGAAGCGACCACTGGTTGT
65 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1894500 CAACAAA-AACTTCTCAATTTC--AGTCAATTTCAACTTTACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1894562 CAACGCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
*
1894603 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1894668 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * ** * * *
1894709 CAACAAACAATTTCCCAATTTCAAAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1894774 CAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGC
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1894815 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1894880 CAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
*
1894921 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1894986 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1895027 CAACAAATAACTTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1895092 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * * ** * *
1895133 CAACAAACAATTTCCTAATTTCGGAGACGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1895198 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1895239 TAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1895304 CAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1895345 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1895410 CAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGATGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* *
1895451 CAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1895516 CAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * * * *
1895557 TAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1895622 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * * ** * *
1895663 AAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* * *
1895727 ACAATGCTACTTTCTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGT
65 ACAACGC-A---------AGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1895779 CAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1895844 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1895885 CAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1895950 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1895991 TAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1896056 CAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1896097 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1896162 CAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGATGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* *
1896203 CAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1896268 CAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1896309 TAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACGAAGGATATTAGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1896374 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTAGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* *
1896415 CAATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1896480 CAACGCAAGCAGTTCAACTTCACGACGAAGGGA-CGCT--TT-T
66 CAACGC-A--AGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1896520 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1896585 CAACGCAAGTTCAACTTCATGACGAAGAGACTGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1896626 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1896691 CAACGTAAGTTCAACTTCACGACGAAGGGACCGATGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
*
1896732 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT--CAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1896795 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* **
1896836 CAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1896901 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * ** * *
1896942 CAACAAACAATTTCCTAATTTC-GAAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAG
1 CAACAAACAACTTCCCAATTTCAG-AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG
* *
1897006 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTTT
65 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1897048 CAACCAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1897113 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * * *
1897154 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGAGATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1897219 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1897260 CAACAAACAACTTCCCAATTTTAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1897325 AAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* *
1897366 TAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1897431 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1897472 CAACAAATAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1897537 CAACGCAAGTTCAACTTCACGACGAA-GGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
*
1897577 CAACAAA-AACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1897641 CAACGCAAG-TCAACTTCACGACGAAGGGACCGCTGGTT-T
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1897680 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1897745 CAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1897786 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1897851 CAACGTAAGTTCAACTTCACGACGAAGGGACCGATGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
*
1897892 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1897957 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* **
1897998 CAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1898063 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * ** * *
1898104 CAACAAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1898169 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * *
1898210 CAACCAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1898275 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1898316 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1898381 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* *
1898422 CAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1898487 AAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * * *
1898528 TAACAAACAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1898593 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * * * ** * *
1898634 CAACAAACAATTTCCCGATTCCAGAGCCATTTTCAACATCATGACGGAGGATATTGGACT-CGGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* * *
1898698 ACAATGCTACTTACTTGGATTTCAACTTCATGACGAAGGGACCGCTAGTTGT
65 ACAACGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1898750 CAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1898815 CAACGCAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * * *
1898856 CAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1898921 CAACACAAGTTCAACTTCACGTCGAAGGGACCGCTAGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* * ** * *
1898962 CAATAAACAACTTTCCAATTTCACTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1899027 CAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
* ** *
1899068 CAATAAACATTTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1899133 CAACGCAAGTTCAACTTCACAACGAA
66 CAACGCAAGTTCAACTTCACGACGAA
1899159 AACAACTTCT
Statistics
Matches: 4193, Mismatches: 422, Indels: 87
0.89 0.09 0.02
Matches are distributed among these distances:
101 24 0.01
102 21 0.01
103 97 0.02
104 254 0.06
105 124 0.03
106 3466 0.83
107 4 0.00
108 5 0.00
109 23 0.01
110 1 0.00
112 1 0.00
114 1 0.00
115 2 0.00
116 166 0.04
117 4 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
Found at i:1894792 original size:212 final size:212
Alignment explanation
Indices: 1894395--1912689 Score: 26006
Period size: 212 Copynumber: 86.2 Consensus size: 212
1894385 TTCAACTTCA
* * *
1894395 CAACGAAAAAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG--ATTGGACTCCAA
1 CAAC-AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG
* * *
1894458 ACAACGCAAGTTCAACTTCACGACGAAGCGACCACTGGTTGTCAACAAA-AACTTCTCAATTTC-
65 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCA
* * * * *
1894521 -AGTCAATTTCAACTTTACAACGAAGGATATTGGACTCCAGACAACGCAAGTTGAACTTCACGAG
130 GAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
1894585 GAAGGGACCGCTGGTTGT
195 GAAGGGACCGCTGGTTGT
*
1894603 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1894668 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCCCAATTTCAA
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
** * * *
1894733 AGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1894798 AAGGGACTGCTGGTTGC
196 AAGGGACCGCTGGTTGT
* * *
1894815 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1894880 CAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1894945 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1895010 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * **
1895027 CAACAAATAACTTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1895092 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * *
1895157 AGACGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1895222 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1895239 TAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1895304 CAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTAAACAAACAACTTCTCAATTTCAT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1895369 AGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1895434 AAGGGACCACTGGATGT
196 AAGGGACCGCTGGTTGT
* *
1895451 CAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1895516 CAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCCCAGTTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * * *
1895581 AGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAACTTCACAATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1895646 AAGGGACGGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * ** * *
1895663 AAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* * * *
1895727 ACAATGCTACTTTCTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTT
65 ACAACGC-A---------AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTT
* * *
1895792 TCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCA
120 CCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCA
1895857 ACTTCACGACGAAGGGACCGCTGGTTGT
185 ACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1895885 CAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1895950 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAACCAACAATTTCCCAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
1896015 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1896080 AAGGGACTGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1896097 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1896162 CAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGATGTCAACAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1896227 AGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1896292 AAGGGAACGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1896309 TAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACGAAGGATATTAGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1896374 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTAGTTGTCAATAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1896439 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGCAGTTCAACTTCACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGC-A--AGTTCAACTTCACG
1896504 ACGAAGGGA-CGCT--TT-T
193 ACGAAGGGACCGCTGGTTGT
* * *
1896520 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1896585 CAACGCAAGTTCAACTTCATGACGAAGAGACTGCTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1896650 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1896715 AAGGGACCGATGGTTGT
196 AAGGGACCGCTGGTTGT
*
1896732 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT--CAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1896795 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* ** *
1896860 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGACAACGCAAGTTCAACTTCACTACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1896925 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * ** * *
1896942 CAACAAACAATTTCCTAATTTC-GAAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAG
1 CAACAAACAACTTCCCAATTTCAG-AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG
* * * *
1897006 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTTTCAACCAACAATTTCCCAATTTCA
65 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCA
*
1897071 GAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAT
130 GAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
1897136 GAAGGGACCGCTGGTTGT
195 GAAGGGACCGCTGGTTGT
* * * * * *
1897154 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGAGATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1897219 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCCCAATTTTAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1897284 AGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1897349 AAGGGAACGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1897366 TAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1897431 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAATAACTTCTCAATTTTAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1897496 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1897561 AA-GGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
*
1897577 CAACAAA-AACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1897641 CAACGCAAG-TCAACTTCACGACGAAGGGACCGCTGGTT-TCAACAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1897704 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1897769 AAGGGACTGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1897786 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1897851 CAACGTAAGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1897916 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1897981 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* **
1897998 CAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1898063 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1898128 AGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1898193 AAGGGACCGCTTGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1898210 CAACCAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1898275 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTAAACAAACAACTTCTCAATTTCAT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1898340 AGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1898405 AAGGGACCGCTGGATGT
196 AAGGGACCGCTGGTTGT
* *
1898422 CAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1898487 AAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCCCAGTTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * * *
1898552 AGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAACTTCACAATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1898617 AAGGGACGGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * ** * *
1898634 CAACAAACAATTTCCCGATTCCAGAGCCATTTTCAACATCATGACGGAGGATATTGGACT-CGGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* * * *
1898698 ACAATGCTACTTACTTGGATTTCAACTTCATGACGAAGGGACCGCTAGTTGTCAACAAACAATTT
65 ACAACGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTT
* * *
1898763 TCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCA
120 CCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCA
*
1898828 ACTTCACGACAAAGGGACCGCTGGTTGT
185 ACTTCACGACGAAGGGACCGCTGGTTGT
* * * *
1898856 CAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * *
1898921 CAACACAAGTTCAACTTCACGTCGAAGGGACCGCTAGTTGTCAATAAACAACTTTCCAATTTCAC
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1898986 TGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1899051 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* ** *
1899068 CAATAAACATTTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1899133 CAACGCAAGTTCAACTT--C-AC--A---A---C-----G---A-AAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1899178 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1899243 AAGCGACCACTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1899260 CAACAAATAACTTCTCAATTTCAAAGTCAATTTCAACTTTACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1899325 CAACGCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1899390 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1899455 AAGGGACCGCTGGTTTT
196 AAGGGACCGCTGGTTGT
* * ** * * *
1899472 CAACAAACAATTTCCCAATTTCAAAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1899537 CAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGCCAATAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1899602 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1899667 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
*
1899684 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAAACTTCACAACGAAGGATATTGGACTCCAG
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTC-AACTTCACAACGAAGGATATTGGACTCCAG
* *
1899749 ACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCCCAATTTCA
65 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCA
* ** *
1899814 TAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAACTTCACTAC
130 GAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
1899879 GAAGGGACCGCTGGTTGT
195 GAAGGGACCGCTGGTTGT
* * * * * ** * *
1899897 CAACAAACAATTTCCTAATTTCGGAGACGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1899962 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTTAACCAACAATTTCCCAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
1900027 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1900092 AAGGGACTGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1900109 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1900174 CAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGATGTCAACAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1900239 AGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1900304 AAGGGAACGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * * *
1900321 TAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * * *
1900386 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTAAACAAACAATTTCCCGATTCCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * * *
1900451 AGCCAATTTCAACATCA-TGACGGAGGATATTTGACT-CGGAACAATGCTACTTTCTTGGATTTC
131 AGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---------AGTTC
*
1900514 AACTTCATGACGAAGGGACCGCTGGTTGT
184 AACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1900543 CAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1900608 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA-TTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1900672 ATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1900737 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1900754 CAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1900819 CAATGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1900884 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1900949 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1900966 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGGAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1901031 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTC-ACAAATAACTT--CAATTTTAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1901093 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1901158 AAGGGACCGCTAGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1901175 CAATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGAATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1901240 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1901305 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1901370 AAGAGACTGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1901387 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1901452 CAACGTAAGTTC-ACTT--C-ACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1901513 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1901578 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* **
1901595 CAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1901660 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTC-G
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1901724 AAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGAC
131 -AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
* *
1901789 GAAGGGACCGCTTGTTTT
195 GAAGGGACCGCTGGTTGT
* * *
1901807 CAACCAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* *
1901872 CAACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGG-T-TAAACAAACAACTT-CCAATTT
65 --ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTT
* * * *
1901934 CATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACG
128 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
1901999 ACGAAGGGACCGCTGGATGT
193 ACGAAGGGACCGCTGGTTGT
* * *
1902019 CAACAAACAACTTCCCAATTTTAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1902084 AAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCCCAGTTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * * *
1902149 AGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAACTTCACAATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1902214 AAGGGACGGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * ** * *
1902231 CAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* * *
1902295 ACAATGCTACTTACTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTT
65 ACAACGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTT
* ** *
1902360 TCCAATTTTGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCA
120 CCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCA
*
1902425 ACTTCACGACGAAGGGACCACTGGTTGT
185 ACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1902453 CAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1902518 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1902583 TGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1902648 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1902665 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1902730 CAACGC-AGTTCAACTTCAC-ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1902793 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1902858 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1902875 CAACAAATAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1902940 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1903005 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1903070 AAGGGACCGCTGGTTTT
196 AAGGGACCGCTGGTTGT
* * *
1903087 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1903152 CAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1903217 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1903282 AAGGGACCGATGGTTGT
196 AAGGGACCGCTGGTTGT
*
1903299 CAAC--A-AACTTCTCAATTTCAGAGCCAA-TTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1903360 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * ** *
1903425 AGCCATTTTCAACTTCACAACGAAGGATATTGGACTTGAGACAACGCAAGTTCAACTTCACTACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1903490 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * ** * *
1903507 CAACAAACAATTTCCTAATTTCGGAGCCAATTTCAACTTCACAGTGAAAGATATTGGATTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1903572 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTGTCAACCAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
**
1903637 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATA
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1903702 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1903719 AAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGG--ATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1903782 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1903847 AGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1903912 AAGGGAACGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * *
1903929 TAACAAACAATTTCCCAGTTTCAGAGCCAATTTCAACTTCA-AACAAAGGATATTAGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * *
1903993 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * *
1904058 AGCCATTTTCAA-TATCA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTACTTGGATTT
131 AGCCAATTTCAACT-TCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---A----G--TT
*
1904120 CAACTTCATGACGAAGGGACCGCTGGTTGT
183 CAACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1904150 CAACAAAC-ATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1904214 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1904279 ATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGTCG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1904344 AAGGGACCGCTAGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1904361 CAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1904426 CAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1904491 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* **
1904556 AAGGTACCGCTAATTGT
196 AAGGGACCGCTGGTTGT
* *
1904573 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1904638 CAACGCAAGTTCAACTTCACGACGAAGCGACCACTGGTTGTCAACAAATAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1904703 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTGAACTTCACGAGG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1904768 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
*
1904785 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1904850 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
** * * *
1904915 AGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* * *
1904980 AAGGGACTGCTAGTTGC
196 AAGGGACCGCTGGTTGT
* * *
1904997 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1905062 CAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1905127 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCA--ACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1905190 AAGGGA--GCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * **
1905205 C-ACAAATAACTTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1905269 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * *
1905334 AGACGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1905399 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * *
1905416 CAACCAACAATTTCCTAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1905481 CATCGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTAAACAAACAACTTCTCAATTTCAT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1905546 AGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1905611 AAGGGACCGCTGGATGT
196 AAGGGACCGCTGGTTGT
* *
1905628 CAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1905693 CAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCCCAGTTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * *
1905758 AGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1905823 AATGGACGGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * ** *
1905840 CAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGAC-AGAGGATATTGGACT-CGG
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGA-AGGATATTGGACTCCAG
* * *
1905903 AACAATGCTACTTTATTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATT
65 -ACAACGC-A----A---G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACT
* * *
1905968 TTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTC
119 TCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTC
1906033 AACTTCACGACGAAGGGACCGCTGGTTGT
184 AACTTCACGACGAAGGGACCGCTGGTTGT
* * * * *
1906062 CAATAAACAATTTCCCAATTTCAGATCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1906127 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1906192 TGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1906257 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1906274 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1906339 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1906404 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1906469 AAGGGACCGCTGATTTT
196 AAGGGACCGCTGGTTGT
* * *
1906486 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCTACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1906551 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTATCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1906616 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTAAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1906681 AAGGGACCACTGGTTTT
196 AAGGGACCGCTGGTTGT
* * * * *
1906698 CAACAAACAATTTCCAAAATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1906763 CAACGCAAGTTCAACTTCATGATGAAGGGACTGCTGGTTGTCAATAAACAACTTCCCAATTTCAA
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
** * *
1906828 AGCCAATTT-AACTTCACAGCGAAGGATATTGGACTTGATACAACACAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1906892 AATGGACGGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * ** * *
1906909 CAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-
* * *
1906973 ACAATGCTACTTTATTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTT
65 ACAACGC-A----A---G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTT
* * *
1907038 TCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCA
120 CCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCA
1907103 ACTTCACGACGAAGGGACCGCTGGTTGT
185 ACTTCACGACGAAGGGACCGCTGGTTGT
* * * *
1907131 CAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1907196 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1907261 TGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1907326 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1907343 CAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1907408 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1907473 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1907538 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1907555 CAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1907620 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1907685 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1907750 AAGGGACCACTGGTTTT
196 AAGGGACCGCTGGTTGT
* * * * *
1907767 CAACAAACAATTTCCAAAATTT-AGAGCCAATTTCAACTTCACAGCGAAGGATATTAGACTCAAG
1 CAACAAACAACTTCC-CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG
* * * *
1907831 ACAACGCAAGTTCAACTTCATGATGAAGGGACTGCTGGTTGTCAATAAACAACTTCCCAATTTCA
65 ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCA
* ** * *
1907896 AAGCCAATTT-AACTTCACAGCGAAGGATATTGGACTTGATACAACACAAGTTCAACTTCACGAC
130 GAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
1907960 GAAGGGACCGCTGGTTGT
195 GAAGGGACCGCTGGTTGT
* * * * ** * *
1907978 CAACAAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1908043 CAACGCCAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACCAACAATTTCCCAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1908108 AGCCAATTTCAACTTCACAGCGAAGAATATTGGACTCCTGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1908173 AAGGGACCGCT-GTTGT
196 AAGGGACCGCTGGTTGT
* * * * * *
1908189 AAACAAACAACTTCTCAATTTCATAGCCAATTTCAACTTCAAAACGAAGGATTTTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1908254 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1908319 AGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1908384 AAGGGTCCGATGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * * *
1908401 TAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATCGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * *
1908466 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * * *
1908531 AGCCAATTTCAACATCA-TGACGGAGGATTTTGGACT-CGGAACAATGCTACTTTCTTGGATTTC
131 AGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---------AGTTC
*
1908594 AACTTCATGACGAAGGGACCGCTGGTTGT
184 AACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1908623 CAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1908688 CAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGATGTCAACAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1908753 AGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1908818 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * *
1908835 TAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * * *
1908900 CAACACAAGTTCAACTTCACAATGAAAGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * *
1908965 AGCCAATTTCAACATCA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTACTTGGATTTC
131 AGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---A----G--TTC
* *
1909028 AACGTCATGACGAAGGGACCGCTGGTTGT
184 AACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1909057 CAACAAAC-AGTTTCCAATTTCAGAGCCAATTTGAACTTCACAGTGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1909121 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1909186 ATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1909251 AAGCGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * *
1909268 CAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1909333 CAATGCAAGTTCAACTTCAAGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1909398 AGCCAATTTCAAACTTCACAGCGAATGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAAC
131 AGCCAATTTC-AACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
1909463 GAAGGGACCGCTGGTTGT
195 GAAGGGACCGCTGGTTGT
*
1909481 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1909546 CAACGCAAGCTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAATAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1909611 AGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1909676 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1909693 CAAC--ATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1909756 CAACGCAAGTTCAACTTCACGACGAAGGGACCG-TGGTTGTCAACAAACAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
1909820 AGCCAATTTCAACTTCA-A-CGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1909883 AAGGGACCGCTGGTTTT
196 AAGGGACCGCTGGTTGT
* * *
1909900 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * ** * *
1909965 CAACGCAAGTTCAACTTCATGACAAAGGGACTACTGGTTGTCAATAAACAACTTCCCAATTTCAT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1910030 AGCCAATTTCAACTTCACAGCGAAGGATATTGCACTCCAGACAACGTAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1910095 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1910112 CAACAAACAACTTCTCAATTTCAGAGACAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1910177 CAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
** *
1910242 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAACTTCACTACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1910307 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * ** * *
1910324 CAACAAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
1910389 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACCAACAATTTCCCAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1910454 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACA
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1910519 AAGGGATCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1910536 AAACAAACAACTTCTCAATTTCATATCCAATTTCAACTTCACAACGAAGGATATTGGACTCCCGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1910601 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * *
1910666 AGCTAATTTTAACTTCACAACAAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1910731 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * * *
1910748 TAACAAACAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * *
1910813 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * *
1910878 AGCCAATTTCAACATCA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTTCTTGGATTTC
131 AGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---------AGTTC
*
1910941 AACTTCATGACGAAGGGACCGCTGGTTGT
184 AACTTCACGACGAAGGGACCGCTGGTTGT
* * * **
1910970 CAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGG--ATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1911033 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
1911098 ATCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1911163 AAGGGACCGCTAGTTGT
196 AAGGGACCGCTGGTTGT
* * * * * *
1911180 CAATAAATAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1911245 CAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAA-AAAC-ACTT-CCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
1911307 AGCCAATTTC-ACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1911371 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* *
1911388 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAATGA-ATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
1911452 CAACGCAAGTTCAACTTCACGACGAAGGGA-CGCTGGTTGTCAACAAATAACTTCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1911516 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACATCGCAAGTTCTACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1911581 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
*
1911598 CAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
1911663 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT-TCAACAAACAATTTCCCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1911727 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1911792 AAGGGACTGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1911809 CAATAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1911874 CAACGCAAGTTTAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACATCTCAATTTCAG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
1911939 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACAACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
1912004 AAGGGACCGTTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * **
1912021 CAACAGATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1912086 CAACGCAAGTTCAAGTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * *
1912151 AGCCTATTTCAACTTCACAGTGAAAGATATTTGATTCCAGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1912216 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * * *
1912233 CAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * *
1912298 CAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTAAACAAATAACTTCTCAATTTCAT
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
1912363 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1912428 AAGGGACCGCTGGTTGT
196 AAGGGACCGCTGGTTGT
* * *
1912445 CAACAAACAACTTCCCAATTTCAGAGCTAATTTTAACTTCACAACGAAGGATATTGGACTCGAGA
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
1912510 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAACAAACAATTTCCCAGTTTCGG
66 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * * *
1912575 AGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAATG
131 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
1912640 AAGGGACGGCTGGGTGT
196 AAGGGACCGCTGGTTGT
* ** *
1912657 CAACAAACAATTTCCTGATTCCAGAGCCAATTT
1 CAACAAACAACTTCCCAATTTCAGAGCCAATTT
1912690 TGACATCATG
Statistics
Matches: 16188, Mismatches: 1672, Indels: 450
0.88 0.09 0.02
Matches are distributed among these distances:
192 164 0.01
193 1 0.00
194 1 0.00
195 1 0.00
196 1 0.00
197 1 0.00
200 1 0.00
201 1 0.00
203 1 0.00
204 1 0.00
206 13 0.00
207 327 0.02
208 595 0.04
209 541 0.03
210 1057 0.07
211 1345 0.08
212 9820 0.61
213 415 0.03
214 9 0.00
215 60 0.00
216 4 0.00
217 5 0.00
218 2 0.00
219 3 0.00
220 141 0.01
221 396 0.02
222 1270 0.08
223 12 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (212 bp):
CAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
AAGGGACCGCTGGTTGT
Found at i:1894898 original size:318 final size:318
Alignment explanation
Indices: 1894411--1912689 Score: 26011
Period size: 318 Copynumber: 57.4 Consensus size: 318
1894401 AAAAACTTCT
* *
1894411 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGG--ATTGGACTCCAAACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1894474 TTCACGACGAAGCGACCACTGGTTGTCAACAAA-AACTTCTCAATTTC--AGTCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1894536 TACAACGAAGGATATTGGACTCCAGACAACGCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1894601 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1894666 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* ** * *
1894724 CAATTTCAAAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1894789 TTCATGACGAAGGGACTGCTGGTTGCCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1894854 CACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1894919 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1894984 GACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* **
1895042 CAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * *
1895107 TTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGGAGACGATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1895172 CACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * *
1895237 GTTAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1895302 GACAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTAAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * *
1895360 CAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1895425 TTCACGACGAAGGGACCACTGGATGTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1895490 CACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * * * *
1895555 GTTAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * * *
1895620 GACAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTAAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * * *
1895678 CGATTCCAGAGCCAATTTCAACATCA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTTC
1 CAATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A-----
* * * * *
1895741 TTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTTTCCAATTTCGGAGC
58 ----AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGC
*
1895806 CAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
119 CAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
* * * * *
1895871 GGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGA
184 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
* * *
1895936 TATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAACCAACAA
249 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA
1896001 TTTCC
314 TTTCC
*
1896006 CAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * *
1896071 TTCACGACGAAGGGACTGCTGGTTGTAAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1896136 CACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGAT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1896201 GTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1896266 GACAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * *
1896324 CAGTTTCGGAGCCAATTTCAACTTCACAACGAAGGATATTAGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1896389 TTCACGACGAAGGGACCGCTAGTTGTCAATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1896454 CACAACGAAGGATATTGGACTCCAGACAACGCAAGCAGTTCAACTTCACGACGAAGGGA-CGCT-
131 CACAGCGAAGGATATTGGACTCCAGACAACGC-A--AGTTCAACTTCACGACGAAGGGACCGCTG
* *
1896517 -TT-TCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
193 GTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
* * * * * *
1896580 CAAGACAACGCAAGTTCAACTTCATGACGAAGAGACTGCTGGTTGTCAATAAACAACTTCC
258 CCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1896641 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1896706 TTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1896771 CA-A-CGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* **
1896834 GTCAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1896899 GACAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * *
1896957 TAATTTC-GAAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAA
1 CAATTTCAG-AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAA
* * * *
1897021 CTTCACGACGAAGGGACCGCTTGTTTTCAACCAACAATTTCCCAATTTCAGAGCCAATTTCAACT
65 CTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACT
*
1897086 TCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGT
130 TCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * * * *
1897151 TGTAAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGAGATTGGACTCC
195 TGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * *
1897216 CGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCC
260 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * *
1897275 CAATTTTAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1897340 TTCACGACGAAGGGAACGCTGGTTGTTAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1897405 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * *
1897470 GTCAACAAATAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1897535 GACAACGCAAGTTCAACTTCACGACGAA-GGACCGCTGGTTGTCAACAAA-AACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1897591 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAG-TCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1897655 TTCACGACGAAGGGACCGCTGGTT-TCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1897719 CACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * *
1897784 GTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1897849 GACAACGTAAGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1897907 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1897972 TTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* ** *
1898037 CACAACGAAGGATATTGGACTTGAGACAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * ** * *
1898102 GTCAACAAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1898167 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTGTCAACCAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
1898225 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * *
1898290 TTCACGATGAAGGGACCGCTGGTTGTAAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1898355 CACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGAT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1898420 GTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1898485 GAAAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * *
1898543 CAGTTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * * * *
1898608 TTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCATTTTCAACAT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * *
1898673 CA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTACTTGGATTTCAACTTCATGACGAAG
131 CACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---A----G--TTCAACTTCACGACGAAG
* * * * **
1898736 GGACCGCTAGTTGTCAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGA
184 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
* *
1898801 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACAAAGGGACCGCTGGTTGTCAATAAACAA
249 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA
1898866 TTTCC
314 TTTCC
* *
1898871 CAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * ** *
1898936 TTCACGTCGAAGGGACCGCTAGTTGTCAATAAACAACTTTCCAATTTCACTGCCAATTTTAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1899001 CACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* ** *
1899066 GTCAATAAACATTTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1899131 GACAACGCAAGTTCAACTT--C-AC--A---A---C-----G---A-AAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1899169 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * *
1899234 TTCACGACGAAGCGACCACTGGTTGTCAACAAATAACTTCTCAATTTCAAAGTCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1899299 TACAACGAAGGATATTGGACTCCAGACAACGCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1899364 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1899429 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* ** * *
1899487 CAATTTCAAAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1899552 TTCATGACGAAGGGACTGCTGGTTGCCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1899617 CACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1899682 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAAACTTCACAACGAAGGATATTGGACTCC
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTC-AACTTCACAACGAAGGATATTGGACTCC
* * *
1899747 AGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCC
260 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* **
1899806 CAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * *
1899871 TTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGGAGACGATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1899936 CACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * *
1900001 GTTAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1900066 GACAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTAAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * *
1900124 CAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1900189 TTCACGACGAAGGGACCACTGGATGTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1900254 CACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * * * *
1900319 GTTAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * * *
1900384 GACAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTAAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * * * *
1900442 CGATTCCAGAGCCAATTTCAACATCA-TGACGGAGGATATTTGACT-CGGAACAATGCTACTTTC
1 CAATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A-----
* * * * *
1900505 TTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTTTCCAATTTCGGAGC
58 ----AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGC
*
1900570 CAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
119 CAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
* * * *
1900635 GGACCGCTGGTTGTCAATAAACAA-TTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGA
184 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
* *
1900699 TATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
249 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA
1900764 CTTT-C
314 -TTTCC
* * *
1900769 CAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1900834 TTCACGACGAAGGGACCACTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1900899 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1900964 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGGAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1901029 GACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTC-ACAAATAACTT--
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1901084 CAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1901149 TTCACGACGAAGGGACCGCTAGTTGTCAATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1901214 CACAACGAAGAATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * *
1901279 TTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * * *
1901344 GACAACGCAAGTTCAACTTCATGACGAAGAGACTGCTGGTTGTCAATAAACAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1901402 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTC-AC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1901466 TT--C-ACGAAGGGACCGATGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1901528 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* **
1901593 GTCAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1901658 GACAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * *
1901716 TAATTTC-GAAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAA
1 CAATTTCAG-AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAA
* * * *
1901780 CTTCACGACGAAGGGACCGCTTGTTTTCAACCAACAATTTCCCAATTTCAGAGCCAATTTCAACT
65 CTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACT
*
1901845 TCACAGCGAAGGATATTGGACTCCAGACAACAACGCAAGTTCAACTTCACGATGAAGGGACCGCT
130 TCACAGCGAAGGATATTGGACTCCAG---ACAACGCAAGTTCAACTTCACGACGAAGGGACCGCT
* * *
1901910 GG-T-TAAACAAACAACTT-CCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGAC
192 GGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
* * *
1901972 TCCCGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCC
257 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * *
1902034 CAATTTTAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1902099 TTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCCCAGTTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * * * * *
1902164 CACAACAAAGGATATTAGACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * ** * *
1902229 GTCAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CG
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1902293 GAACAATGCTACTTACTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAAT
261 G-ACAACGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
*
1902358 TTTC
315 TTCC
** *
1902362 CAATTTTGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1902427 TTCACGACGAAGGGACCACTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1902492 CATAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * *
1902557 GTCAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1902622 GACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
1902680 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGC-AGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1902744 TTCAC-ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1902808 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * *
1902873 GTCAACAAATAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1902938 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1902996 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1903061 TTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1903126 CACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * *
1903191 GTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1903256 GACAACGTAAGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAACAAAC---TTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1903311 CAATTTCAGAGCCAA-TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1903375 TTCACAACGAAGGGACCGCTGGTTGTCAACAAATAACTTCCCAATTTCAGAGCCATTTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* ** *
1903440 CACAACGAAGGATATTGGACTTGAGACAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * ** * *
1903505 GTCAACAAACAATTTCCTAATTTCGGAGCCAATTTCAACTTCACAGTGAAAGATATTGGATTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1903570 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTGTCAACCAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
1903628 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
** * * * *
1903693 TTCACGATAAAGGGACCGCTGGTTGTAAACAAACAACTTCTCAATTTCATAGCCAATGTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1903758 CACAACGAAGG--ATTGGACTCCCGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGAT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1903821 GTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1903886 GAAAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * *
1903944 CAGTTTCAGAGCCAATTTCAACTTCA-AACAAAGGATATTAGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * * *
1904008 TTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCATTTTCAA-TA
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACT-
* * * * *
1904072 TCA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTACTTGGATTTCAACTTCATGACGAA
130 TCACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---A----G--TTCAACTTCACGACGAA
* * * **
1904135 GGGACCGCTGGTTGTCAACAAAC-ATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGG
183 GGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG
*
1904199 ATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACA
248 ATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACA
1904264 ATTTCC
313 ATTTCC
* *
1904270 CAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * *
1904335 TTCACGTCGAAGGGACCGCTAGTTGTCAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1904400 CACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1904465 GTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * ** * *
1904530 GACAACGCAAGTTCAACTTCACAACGAAGGTACCGCTAATTGTCAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1904588 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * *
1904653 TTCACGACGAAGCGACCACTGGTTGTCAACAAATAACTTCTCAATTTCAGAGTCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1904718 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1904783 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1904848 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
** * *
1904906 CAATTTCAGAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * *
1904971 TTCATGACGAAGGGACTGCTAGTTGCCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1905036 CACAGCGAAGGATATTGGACTCGAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1905101 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1905166 GACAACGCAAGTTCAACTTCA--ACGAAGGGA--GCTGGTTGTC-ACAAATAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* **
1905219 CAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * *
1905284 TTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCTAATTTCGGAGACGATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1905349 CACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * *
1905414 GTCAACCAACAATTTCCTAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1905479 GACATCGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTAAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * *
1905537 CAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1905602 TTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1905667 CACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGAACGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * * * *
1905732 GTTAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1905797 GACAACACAAGTTCAACTTCACGACGAATGGACGGCTGGTTGTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * *
1905855 CGATTCCAGAGCCAATTTCAACATCA-TGAC-AGAGGATATTGGACT-CGGAACAATGCTACTTT
1 CAATTTCAGAGCCAATTTCAACTTCACAG-CGA-AGGATATTGGACTCCAG-ACAACGC-A----
* * * *
1905917 ATTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAATTTTCCAATTTCGGAG
58 A---G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAG
*
1905982 CCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
118 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * * * *
1906047 GGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAATTTTAACTTCACAGCGAAGG
183 GGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG
* *
1906112 ATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACA
248 ATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACA
1906177 ACTTT-C
313 A-TTTCC
* * *
1906183 CAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1906248 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1906313 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1906378 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1906443 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGATTTTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1906501 CAATTTCAGAGCCAATTTCTACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1906566 TTCACGACGAAGGGACCGCTGGTTATCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1906631 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTAAACTTCACGACGAAGGGACCACTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * * *
1906696 TTCAACAAACAATTTCCAAAATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * * *
1906761 GACAACGCAAGTTCAACTTCATGATGAAGGGACTGCTGGTTGTCAATAAACAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* ** * *
1906819 CAATTTCAAAGCCAATTT-AACTTCACAGCGAAGGATATTGGACTTGATACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * *
1906883 TTCACGACGAATGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACAT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * *
1906948 CA-TGACGGAGGATATTGGACT-CGGAACAATGCTACTTTATTGGATTTCAACTTCATGACGAAG
131 CACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A----A---G--TTCAACTTCACGACGAAG
* * * **
1907011 GGACCGCTGGTTGTCAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGA
184 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
*
1907076 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
249 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA
1907141 TTTCC
314 TTTCC
* *
1907146 CAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1907211 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1907276 CACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1907341 GTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1907406 GACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1907464 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1907529 TTCACGATGAAGGGACCGCTGGTTGTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
*
1907594 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
*
1907659 GTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1907724 GACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTTTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * *
1907782 AAAATTT-AGAGCCAATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAACGCAAGTTCAA
1 -CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAA
* * * * *
1907846 CTTCATGATGAAGGGACTGCTGGTTGTCAATAAACAACTTCCCAATTTCAAAGCCAATTT-AACT
65 CTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACT
** * *
1907910 TCACAGCGAAGGATATTGGACTTGATACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGT
130 TCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * * * ** * *
1907975 TGTCAACAAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCC
195 TGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
1908040 AGACAACGCCAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACCAACAATTTCC
260 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * *
1908099 CAATTTCGGAGCCAATTTCAACTTCACAGCGAAGAATATTGGACTCCTGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1908164 TTCACGACGAAGGGACCGCT-GTTGTAAACAAACAACTTCTCAATTTCATAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * *
1908228 CAAAACGAAGGATTTTGGACTCCCGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGAT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1908293 GTCAACAAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1908358 GACAACGCAAGTTCAACTTCACGACGAAGGGTCCGATGGTTGTTAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * * *
1908416 CAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATCGGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * * *
1908481 TTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACAT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * * * *
1908546 CA-TGACGGAGGATTTTGGACT-CGGAACAATGCTACTTTCTTGGATTTCAACTTCATGACGAAG
131 CACAG-CGAAGGATATTGGACTCCAG-ACAACGC-A---------AGTTCAACTTCACGACGAAG
* * * **
1908609 GGACCGCTGGTTGTCAACAAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGA
184 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
* *
1908674 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACTGCTGGATGTCAACAAACAA
249 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA
*
1908739 CTTCC
314 TTTCC
* * *
1908744 CAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * *
1908809 TTCATGACGAAGGGACCGCTGGTTGTTAACAAACAATTTCCCAGTTTCGGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * * * * *
1908874 CACAACAAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAATGAAAGGACGGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * ** * *
1908939 GTCAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CG
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1909003 GAACAATGCTACTTACTTGGATTTCAACGTCATGACGAAGGGACCGCTGGTTGTCAACAAACAGT
261 G-ACAACGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
1909068 TT-C
315 TTCC
* *
1909071 CAATTTCAGAGCCAATTTGAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1909136 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1909201 CACAGCGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGCGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * *
1909266 GTCAATAAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1909331 GACAATGCAAGTTCAACTTCAAGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1909389 CAATTTCAGAGCCAATTTCAAACTTCACAGCGAATGATATTGGACTCCAGACAACGCAAGTTCAA
1 CAATTTCAGAGCCAATTTC-AACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAA
* *
1909454 CTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACT
65 CTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACT
* * *
1909519 TCACAACGAAGGATATTGGACTCCAGACAACGCAAGCTCAACTTCACGACGAAGGGACCACTGGT
130 TCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * *
1909584 TGTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCC
195 TGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
1909649 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACATAAC---TTCT
260 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACA-AACAATTTCC
*
1909706 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1909771 TTCACGACGAAGGGACCG-TGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
1909835 CA-A-CGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * *
1909898 TTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * ** * *
1909963 GACAACGCAAGTTCAACTTCATGACAAAGGGACTACTGGTTGTCAATAAACAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * *
1910021 CAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGCACTCCAGACAACGTAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1910086 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGACAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1910151 CACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * **
1910216 GTCAACAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1910281 GACAACGCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * *
1910339 TAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1910404 TTCACGACGAAGGGACCGCTGGTTGTCAACCAACAATTTCCCAATTTCGGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1910469 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACAAAGGGATCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * *
1910534 GTAAACAAACAACTTCTCAATTTCATATCCAATTTCAACTTCACAACGAAGGATATTGGACTCCC
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1910599 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAACAAACAACTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * *
1910657 CAATTTCAGAGCTAATTTTAACTTCACAACAAAGGATATTGGACTCGAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1910722 TTCACGACGAAGGGACCGCTGGTTGTTAACAAACAATTTCCCAGTTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * * * * *
1910787 CACAACAAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * ** * *
1910852 GTCAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CG
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * *
1910916 GAACAATGCTACTTTCTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACAAT
261 G-ACAACGC-A---------AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
*
1910981 TTTC
315 TTCC
* *
1910985 CAATTTCGGAGCCAATTTCAACTTCACAGTGAAGG--ATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
1911048 TTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGATCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * * *
1911113 CACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAACTTCATGACGAAGGGACCGCTAGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * * *
1911178 GTCAATAAATAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* *
1911243 GACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAA-AAAC-ACTT-C
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
1911298 CAATTTCAGAGCCAATTTC-ACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
1911362 TTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1911427 CACAACGAATGA-ATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGA-CGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* *
1911490 GTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * * *
1911555 GACATCGCAAGTTCTACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1911613 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
1911678 TTCACGACGAAGGGACCGCTGGTT-TCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* * *
1911742 CACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACTGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * *
1911807 GTCAATAAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
* * ** *
1911872 GACAACGCAAGTTTAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACATCT
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
1911930 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * *
1911995 TTCACAACGAAGGGACCGTTGGTTGTCAACAGATAACTTCCCAATTTCAGAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
** *
1912060 CACAGCGAAGGATATTGGACTTGAGACAACGCAAGTTCAAGTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * * * ** * * *
1912125 GTCAACAAACAATTTCCTAATTTCGGAGCCTATTTCAACTTCACAGTGAAAGATATTTGATTCCA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1912190 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACCAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
*
1912248 CAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * *
1912313 TTCACTACGAAGGGACCGCTGGTTGTAAACAAATAACTTCTCAATTTCATAGCCAATTTCAACTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
* *
1912378 CACAACGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
131 CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
* * *
1912443 GTCAACAAACAACTTCCCAATTTCAGAGCTAATTTTAACTTCACAACGAAGGATATTGGACTCGA
196 GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
*
1912508 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAACAAACAATTTCC
261 GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* * * * * *
1912566 CAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * * ** *
1912631 TTCACAATGAAGGGACGGCTGGGTGTCAACAAACAATTTCCTGATTCCAGAGCCAATTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTT
1912690 TGACATCATG
Statistics
Matches: 16081, Mismatches: 1649, Indels: 467
0.88 0.09 0.03
Matches are distributed among these distances:
298 262 0.02
299 1 0.00
300 1 0.00
301 2 0.00
302 1 0.00
303 1 0.00
306 1 0.00
307 1 0.00
309 1 0.00
310 1 0.00
312 148 0.01
313 522 0.03
314 856 0.05
315 777 0.05
316 1148 0.07
317 1452 0.09
318 7453 0.46
319 584 0.04
320 11 0.00
321 60 0.00
322 4 0.00
323 5 0.00
324 2 0.00
325 3 0.00
326 334 0.02
327 679 0.04
328 1752 0.11
329 19 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (318 bp):
CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTT
CACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT
GTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCA
GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
Found at i:1899222 original size:86 final size:86
Alignment explanation
Indices: 1899083--1899244 Score: 297
Period size: 86 Copynumber: 1.9 Consensus size: 86
1899073 AACATTTTCC
* *
1899083 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAAC
1899148 TTCACAACGAAAACAACTTCT
66 TTCACAACGAAAACAACTTCT
1899169 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAAC
*
1899234 TTCACGACGAA
66 TTCACAACGAA
1899245 GCGACCACTG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 73 1.00
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.22
Consensus pattern (86 bp):
CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAGTTCAAC
TTCACAACGAAAACAACTTCT
Found at i:1899232 original size:43 final size:43
Alignment explanation
Indices: 1899099--1899245 Score: 135
Period size: 43 Copynumber: 3.4 Consensus size: 43
1899089 CAGAGCCAAT
* *
1899099 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
** * *
1899142 TTCAACTTCACAACGAA--A-A--CAACTTCTCAATTTCAGA-GCCAAT
1 TTCAACTTCACAACGAAGGATATTGGAC-TC-CAA--ACA-ACG-CAAG
1899185 TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
*
1899228 TTCAACTTCACGACGAAG
1 TTCAACTTCACAACGAAG
1899246 CGACCACTGG
Statistics
Matches: 81, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 3 0.04
41 1 0.01
42 3 0.04
43 58 0.72
44 3 0.04
45 1 0.01
46 4 0.05
47 2 0.02
48 2 0.02
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (43 bp):
TTCAACTTCACAACGAAGGATATTGGACTCCAAACAACGCAAG
Found at i:1899362 original size:106 final size:106
Alignment explanation
Indices: 1899158--1912689 Score: 19292
Period size: 106 Copynumber: 127.3 Consensus size: 106
1899148 TTCACAACGA
* *
1899158 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1899223 GCAAGTTCAACTTCACGACGAAGCGACCACTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1899264 AAATAACTTCTCAATTTCAAAGTCAATTTCAACTTTACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1899329 GCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1899370 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1899435 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * ** * * *
1899476 AAACAATTTCCCAATTTCAAAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1899541 GCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGCCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1899582 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1899647 GTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1899688 AAACAACTTCTCAATTTCAGAGCCAATTTCAAACTTCACAACGAAGGATATTGGACTCCAGACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTC-AACTTCACAACGAAGGATATTGGACTCCAGACAA
*
1899753 CGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
65 CGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1899795 AAATAACTTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1899860 GCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * ** * *
1899901 AAACAATTTCCTAATTTCGGAGACGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1899966 GCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1900007 CAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1900072 GCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1900113 AAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1900178 GCAAGTTCAACTTCACGACGAAGGGACCACTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1900219 AAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1900284 GCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * *
1900325 AAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * * *
1900390 ACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * * *
1900431 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTTGACT-CGGAACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAA
* * *
1900495 TGCTACTTTCTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
65 CGC-A---------AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1900547 AAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1900612 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1900653 AAACAA-TTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1900717 ACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1900758 AAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1900823 GCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1900864 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1900929 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1900970 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGGAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1901035 GCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTC-AC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1901075 AAATAACTT--CAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1901138 GCAAGTTCAACTTCACGACGAAGGGACCGCTAGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1901179 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGAATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1901244 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1901285 AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1901350 GCAAGTTCAACTTCATGACGAAGAGACTGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1901391 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1901456 GTAAGTTC-ACTT--C-ACGAAGGGACCGATGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1901493 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1901558 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* **
1901599 AAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1901664 GCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * ** * *
1901705 AAACAATTTCCTAATTTC-GAAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAA
1 AAACAACTTCCCAATTTCAG-AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAA
* *
1901769 CGCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTTTCAAC
65 CGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1901811 CAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG---AC
* *
1901876 AACGCAAGTTCAACTTCACGATGAAGGGACCGCTGG-T-TAAAC
63 AACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1901918 AAACAACTT-CCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1901982 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1902023 AAACAACTTCCCAATTTTAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1902088 GCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1902129 AAACAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1902194 ACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1902235 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGAACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAA
* *
1902299 TGCTACTTACTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
65 CGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * ** **
1902351 AAACAATTTTCCAATTTTGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1902416 GCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1902457 AAACAATTTCCCAATTTCAGATCCAATTTCAACTTCATAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1902522 ACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1902563 AAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1902628 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1902669 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1902734 GC-AGTTCAACTTCAC-ACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1902773 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1902838 GCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1902879 AAATAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1902944 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1902985 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1903050 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1903091 AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1903156 GCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1903197 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1903262 GTAAGTTCAACTTCACGACGAAGGGACCGATGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1903303 --A-AACTTCTCAATTTCAGAGCCAA-TTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1903364 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * **
1903405 AAATAACTTCCCAATTTCAGAGCCATTTTCAACTTCACAACGAAGGATATTGGACTTGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1903470 GCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * ** * *
1903511 AAACAATTTCCTAATTTCGGAGCCAATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1903576 GCAAGTTCAACTTCACGACGAAGGGACCGCTTGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1903617 CAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
** *
1903682 GCAAGTTCAACTTCACGATAAAGGGACCGCTGGTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1903723 AAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGG--ATTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1903786 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1903827 AAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGAAAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1903892 GCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1903933 AAACAATTTCCCAGTTTCAGAGCCAATTTCAACTTCA-AACAAAGGATATTAGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1903997 ACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1904038 AAACAATTTCCCGATTCCAGAGCCATTTTCAA-TATCATGACGGAGGATATTGGACT-CGGAACA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACT-TCACAACGAAGGATATTGGACTCCAG-ACA
* *
1904101 ATGCTACTTACTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
64 ACGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1904154 AAAC-ATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1904218 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1904259 AAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1904324 ACAAGTTCAACTTCACGTCGAAGGGACCGCTAGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1904365 AAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1904430 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1904471 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * **
1904536 GCAAGTTCAACTTCACAACGAAGGTACCGCTAATTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1904577 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAAACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1904642 GCAAGTTCAACTTCACGACGAAGCGACCACTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1904683 AAATAACTTCTCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1904748 GCAAGTTGAACTTCACGAGGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1904789 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1904854 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* ** * * *
1904895 AAACAATTTCCCAATTTCAGAGCCAATTTCAACTAAACAGCAAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * * *
1904960 GCAAGTTCAACTTCATGACGAAGGGACTGCTAGTTGCCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1905001 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1905066 GTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1905107 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1905172 GCAAGTTCAACTTCA--ACGAAGGGA--GCTGGTTGTC-AC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1905208 AAATAACTTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1905273 GCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * ** * *
1905314 AAACAATTTCCTAATTTCGGAGACGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1905379 GCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1905420 CAACAATTTCCTAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACATC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1905485 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1905526 AAACAACTTCTCAATTTCATAGCCAATGTCAACTTCACAACGAAGGATATTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1905591 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1905632 AAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1905697 GCAAGTTCAACTTCACGACGAAGGGAACGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * *
1905738 AAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTAGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1905803 ACAAGTTCAACTTCACGACGAATGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** *
1905844 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGAC-AGAGGATATTGGACT-CGGAACA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGA-AGGATATTGGACTCCAG-ACA
* *
1905907 ATGCTACTTTATTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
64 ACGC-A----A---G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1905960 AAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1906025 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1906066 AAACAATTTCCCAATTTCAGATCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1906131 ACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1906172 AAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1906237 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1906278 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1906343 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1906384 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1906449 GCAAGTTCAACTTCACGACGAAGGGACCGCTGATTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1906490 AAACAATTTCCCAATTTCAGAGCCAATTTCTACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1906555 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTATCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1906596 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1906661 GCAAGTTAAACTTCACGACGAAGGGACCACTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1906702 AAACAATTTCCAAAATTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1906767 GCAAGTTCAACTTCATGATGAAGGGACTGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * ** *
1906808 AAACAACTTCCCAATTTCAAAGCCAATTT-AACTTCACAGCGAAGGATATTGGACTTGATACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1906872 ACAAGTTCAACTTCACGACGAATGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1906913 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGAACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAA
* *
1906977 TGCTACTTTATTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
65 CGC-A----A---G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1907029 AAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1907094 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1907135 AAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1907200 ACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1907241 AAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1907306 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1907347 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1907412 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1907453 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1907518 ACAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1907559 AAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1907624 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1907665 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1907730 GCAAGTTCAACTTCACGACGAAGGGACCACTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1907771 AAACAATTTCCAAAATTT-AGAGCCAATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAA
1 AAACAACTTCC-CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAA
* * * *
1907835 CGCAAGTTCAACTTCATGATGAAGGGACTGCTGGTTGTCAAT
65 CGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * ** *
1907877 AAACAACTTCCCAATTTCAAAGCCAATTT-AACTTCACAGCGAAGGATATTGGACTTGATACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1907941 ACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1907982 AAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1908047 GCCAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * *
1908088 CAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGAATATTGGACTCCTGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1908153 GCAAGTTCAACTTCACGACGAAGGGACCGCT-GTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1908193 AAACAACTTCTCAATTTCATAGCCAATTTCAACTTCAAAACGAAGGATTTTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1908258 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1908299 AAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1908364 GCAAGTTCAACTTCACGACGAAGGGTCCGATGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * *
1908405 AAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATCGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1908470 ACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * * *
1908511 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATTTTGGACT-CGGAACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAA
* * *
1908575 TGCTACTTTCTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
65 CGC-A---------AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1908627 AAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1908692 GCAAGTTCAACTTCACGACGAAGGGACTGCTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1908733 AAACAACTTCCCAATTTCAGAGCTAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1908798 GCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1908839 AAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * * *
1908904 ACAAGTTCAACTTCACAATGAAAGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1908945 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGAACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAA
* * *
1909009 TGCTACTTACTTGGATTTCAACGTCATGACGAAGGGACCGCTGGTTGTCAAC
65 CGC-A---A----G--TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1909061 AAAC-AGTTTCCAATTTCAGAGCCAATTTGAACTTCACAGTGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1909125 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1909166 AAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1909231 ACAAGTTCAACTTCACGACGAAGCGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1909272 AAACAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1909337 GCAAGTTCAACTTCAAGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1909378 AAACAACTTCCCAATTTCAGAGCCAATTTCAAACTTCACAGCGAATGATATTGGACTCCAGACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTC-AACTTCACAACGAAGGATATTGGACTCCAGACAA
*
1909443 CGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
65 CGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1909485 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1909550 GCAAGCTCAACTTCACGACGAAGGGACCACTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1909591 AAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1909656 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1909697 --ATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1909760 GCAAGTTCAACTTCACGACGAAGGGACCG-TGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1909800 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTT--CAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1909863 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1909904 AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * ** *
1909969 GCAAGTTCAACTTCATGACAAAGGGACTACTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1910010 AAACAACTTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGCACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1910075 GTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1910116 AAACAACTTCTCAATTTCAGAGACAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1910181 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * **
1910222 AAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1910287 GCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1910328 AAACAATTTCCTAATTTCGGAGCCGATTTCAACTTCACAGTGAAAGATATTGGATTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1910393 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1910434 CAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1910499 GCAAGTTCAACTTCACGACAAAGGGATCGCTGGTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1910540 AAACAACTTCTCAATTTCATATCCAATTTCAACTTCACAACGAAGGATATTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1910605 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1910646 AAACAACTTCCCAATTTCAGAGCTAATTTTAACTTCACAACAAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1910711 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1910752 AAACAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1910817 ACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * *
1910858 AAACAATTTCCCGATTCCAGAGCCAATTTCAACATCATGACGGAGGATATTGGACT-CGGAACAA
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAG-ACAA
* * *
1910922 TGCTACTTTCTTGGATTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAAC
65 CGC-A---------AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1910974 AAACAATTTTCCAATTTCGGAGCCAATTTCAACTTCACAGTGAAGG--ATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1911037 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1911078 AAACAATTTCCCAATTTCAGATCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * *
1911143 ACAAGTTCAACTTCATGACGAAGGGACCGCTAGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * * *
1911184 AAATAACTTTCCAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAAT
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1911249 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAA-
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1911289 AAAC-ACTT-CCAATTTCAGAGCCAATTTC-ACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1911351 GCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1911392 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAATGA-ATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1911456 GCAAGTTCAACTTCACGACGAAGGGA-CGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1911496 AAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACATC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1911561 GCAAGTTCTACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
1911602 AAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1911667 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTT-TCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1911707 AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1911772 GCAAGTTCAACTTCATGACGAAGGGACTGCTGGTTGTCAAT
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1911813 AAATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1911878 GCAAGTTTAACTTCACGATGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
1911919 AAACAACATCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * *
1911984 ACAAGTTCAACTTCACAACGAAGGGACCGTTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * **
1912025 AGATAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1912090 GCAAGTTCAAGTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * ** * * *
1912131 AAACAATTTCCTAATTTCGGAGCCTATTTCAACTTCACAGTGAAAGATATTTGATTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1912196 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1912237 CAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* *
1912302 GCAAGTTCAACTTCACTACGAAGGGACCGCTGGTTGTAAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * *
1912343 AAATAACTTCTCAATTTCATAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCCGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
1912408 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * *
1912449 AAACAACTTCCCAATTTCAGAGCTAATTTTAACTTCACAACGAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
*
1912514 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* * * * *
1912555 AAACAATTTCCCAGTTTCGGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAAC
1 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
* * * * *
1912620 ACAAGTTCAACTTCACAATGAAGGGACGGCTGGGTGTCAAC
66 GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* ** *
1912661 AAACAATTTCCTGATTCCAGAGCCAATTT
1 AAACAACTTCCCAATTTCAGAGCCAATTT
1912690 TGACATCATG
Statistics
Matches: 12086, Mismatches: 1187, Indels: 306
0.89 0.09 0.02
Matches are distributed among these distances:
101 76 0.01
102 245 0.02
103 249 0.02
104 482 0.04
105 875 0.07
106 9190 0.76
107 225 0.02
108 4 0.00
109 36 0.00
110 3 0.00
111 6 0.00
112 1 0.00
113 1 0.00
114 21 0.00
115 98 0.01
116 563 0.05
117 11 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAAC
GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
Found at i:1913839 original size:2 final size:2
Alignment explanation
Indices: 1913832--1913874 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1913822 ACATTATTTT
1913832 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1913874 T
1 T
1913875 TATTTTTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1914066 original size:49 final size:45
Alignment explanation
Indices: 1914012--1914137 Score: 116
Period size: 49 Copynumber: 2.7 Consensus size: 45
1914002 ATTTATTTTC
1914012 ATTTATTTATTATTATATATTTTAGTATTTTATTATATTATACATACATT
1 ATTTATTT-TTATTATATATTTTAGTATTTT-TTAT-TTATAC-TA-ATT
* * *
1914062 -TTTATTTTTTATATGTATATTTT-TTATTATTTTATTTATACTATTT
1 ATTTA-TTTTTAT-TATATATTTTAGTATT-TTTTATTTATACTAATT
*
1914108 ATTTATTTTCATTATAT-TTTTAGT-TTTTTT
1 ATTTATTTTTATTATATATTTTAGTATTTTTT
1914138 GCTCTTATTA
Statistics
Matches: 65, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
43 4 0.06
44 6 0.09
45 5 0.08
46 8 0.12
47 6 0.09
48 6 0.09
49 16 0.25
50 14 0.22
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.67
Consensus pattern (45 bp):
ATTTATTTTTATTATATATTTTAGTATTTTTTATTTATACTAATT
Found at i:1914083 original size:21 final size:21
Alignment explanation
Indices: 1914055--1914136 Score: 71
Period size: 21 Copynumber: 3.8 Consensus size: 21
1914045 TATATTATAC
1914055 ATACATTTTTATTTTTTATATGT
1 ATAC-TTTTTATTTTTTATAT-T
*
1914078 ATATTTTTTATTATTTTAT-TT
1 ATACTTTTTATT-TTTTATATT
*
1914099 ATACTATTTATTTATTT-TCATT
1 ATACTTTTTATTT-TTTAT-ATT
1914121 ATA-TTTTTAGTTTTTT
1 ATACTTTTTA-TTTTTT
1914137 TGCTCTTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
20 2 0.04
21 22 0.44
22 17 0.34
23 9 0.18
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (21 bp):
ATACTTTTTATTTTTTATATT
Found at i:1914085 original size:22 final size:23
Alignment explanation
Indices: 1914013--1914116 Score: 79
Period size: 23 Copynumber: 4.3 Consensus size: 23
1914003 TTTATTTTCA
*
1914013 TTTATTTATTAT-TATA-TATTT
1 TTTATTTTTTATATATACTATTT
* *
1914034 TAGTATTTTATTATATTATACATACATT
1 T-TTATTTT-TTATA-TATAC-TA-TTT
*
1914062 TTTATTTTTTATATGTA-TATTT
1 TTTATTTTTTATATATACTATTT
*
1914084 TTTATTATTTTATTTATACTATTT
1 TTTATT-TTTTATATATACTATTT
1914108 ATTTATTTT
1 -TTTATTTT
1914117 CATTATATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
21 1 0.02
22 13 0.20
23 15 0.23
24 7 0.11
25 13 0.20
26 5 0.08
27 8 0.12
28 3 0.05
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTATTTTTTATATATACTATTT
Found at i:1914137 original size:21 final size:20
Alignment explanation
Indices: 1914055--1914137 Score: 69
Period size: 22 Copynumber: 3.9 Consensus size: 20
1914045 TATATTATAC
1914055 ATACATTTTTATTTTTTATATGT
1 ATAC-TTTTTATTTTTT-TAT-T
* *
1914078 ATATTTTTTATTATTTTATTT
1 ATACTTTTTATTTTTTTA-TT
*
1914099 ATACTATTTATTTATTTTCATT
1 ATACTTTTTATTT-TTTT-ATT
1914121 ATA-TTTTTAGTTTTTTT
1 ATACTTTTTA-TTTTTTT
1914138 GCTCTTATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
21 22 0.44
22 24 0.48
23 4 0.08
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (20 bp):
ATACTTTTTATTTTTTTATT
Found at i:1914238 original size:20 final size:19
Alignment explanation
Indices: 1914198--1914245 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
1914188 TTTTATCTTC
* *
1914198 ATTTATTTTATTTTATTCA
1 ATTTATTTTATTTCATCCA
1914217 ATTTCATTTTATTTCATCCA
1 ATTT-ATTTTATTTCATCCA
1914237 A-TTATTTTA
1 ATTTATTTTA
1914246 AGTTTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
20 14 0.54
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTATTTTATTTCATCCA
Found at i:1915002 original size:20 final size:22
Alignment explanation
Indices: 1914973--1915025 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 22
1914963 ATAGGGCAGA
*
1914973 GGGAATCGAT-ACCC-TTGAAG
1 GGGAACCGATCACCCTTTGAAG
* *
1914993 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGA-TCACCCTTTGAAG
1915016 GGGAACCGAT
1 GGGAACCGAT
1915026 TCCCCCCAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 8 0.30
21 1 0.04
22 4 0.15
23 14 0.52
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (22 bp):
GGGAACCGATCACCCTTTGAAG
Found at i:1915030 original size:22 final size:23
Alignment explanation
Indices: 1914987--1915031 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
1914977 ATCGATACCC
1914987 TTGAAGGGGAACCGATTCCCCCT
1 TTGAAGGGGAACCGATTCCCCCT
*
1915010 TTGAATGGGAACCGATTCCCCC
1 TTGAAGGGGAACCGATTCCCCC
1915032 CAGGGGAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.22
Consensus pattern (23 bp):
TTGAAGGGGAACCGATTCCCCCT
Found at i:1923843 original size:22 final size:19
Alignment explanation
Indices: 1923783--1923844 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
1923773 AAATCCAAAA
*
1923783 CCCC-AGGGGGTATCGATT
1 CCCCTAGGGGGAATCGATT
1923801 CCCCTAGGGGGAATC-AGTT
1 CCCCTAGGGGGAATCGA-TT
1923820 CCCCTTCAAGGGGGAATCGATT
1 CCCC-T--AGGGGGAATCGATT
1923842 CCC
1 CCC
1923845 TCTGCCCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
18 5 0.14
19 15 0.41
20 1 0.03
22 15 0.41
23 1 0.03
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (19 bp):
CCCCTAGGGGGAATCGATT
Found at i:1935201 original size:18 final size:19
Alignment explanation
Indices: 1935164--1935200 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
1935154 TGCATTTAAA
1935164 TGTTGTTAGGTTTGGGGGG
1 TGTTGTTAGGTTTGGGGGG
1935183 TGTTGTTAGGTTTGGGGG
1 TGTTGTTAGGTTTGGGGG
1935201 TAATGCCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.05, C:0.00, G:0.51, T:0.43
Consensus pattern (19 bp):
TGTTGTTAGGTTTGGGGGG
Found at i:1942362 original size:19 final size:18
Alignment explanation
Indices: 1942335--1942381 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
1942325 GTACATGTTA
1942335 TGAAAATGAAATGTGAAAG
1 TGAAAATGAAA-GTGAAAG
*
1942354 TGAATATGAAAGTGAAAG
1 TGAAAATGAAAGTGAAAG
1942372 TTGAAAATGA
1 -TGAAAATGA
1942382 GATATGACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (18 bp):
TGAAAATGAAAGTGAAAG
Found at i:1952345 original size:22 final size:23
Alignment explanation
Indices: 1952318--1952360 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
1952308 GATAAAATGA
1952318 TAATTTCACATTA-ATT-GAATTT
1 TAATTTCA-ATTATATTAGAATTT
1952340 TAATTTCAATTATATTAGAAT
1 TAATTTCAATTATATTAGAAT
1952361 CAAGACATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.49
Consensus pattern (23 bp):
TAATTTCAATTATATTAGAATTT
Found at i:1952480 original size:21 final size:21
Alignment explanation
Indices: 1952456--1952496 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1952446 AGCTAAGGGG
1952456 AGCTT-TTTCATTTTATTTTTA
1 AGCTTATTTCA-TTTATTTTTA
*
1952477 AGCTTATTTGATTTATTTTT
1 AGCTTATTTCATTTATTTTT
1952497 GGATTAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (21 bp):
AGCTTATTTCATTTATTTTTA
Found at i:1958490 original size:56 final size:57
Alignment explanation
Indices: 1958353--1958523 Score: 245
Period size: 56 Copynumber: 3.0 Consensus size: 57
1958343 CATAACGATA
* * * * *
1958353 CAACCCTGTCACGAACAGTAAGGCCCTGAGCACAAAGCCAAGGAACCTGCAAGTAAT
1 CAACCCCGTCACGAACAGTAAGGCTCTCAGCACAAAGCCGAGGAACCTGCAAGTATT
* * *
1958410 CAACCCCGTCACGAACAGTAAGGCTCTCAACACAAAACTGAGGAACCTGC-AGTATT
1 CAACCCCGTCACGAACAGTAAGGCTCTCAGCACAAAGCCGAGGAACCTGCAAGTATT
* *
1958466 CAACCCCGTCATGAACAGTAAGGCTCTCAGCGCAAAGCCGAGGAACCTGCAAGTATT
1 CAACCCCGTCACGAACAGTAAGGCTCTCAGCACAAAGCCGAGGAACCTGCAAGTATT
1958523 C
1 C
1958524 TTCCAACAAC
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 50 0.50
57 50 0.50
ACGTcount: A:0.35, C:0.30, G:0.20, T:0.15
Consensus pattern (57 bp):
CAACCCCGTCACGAACAGTAAGGCTCTCAGCACAAAGCCGAGGAACCTGCAAGTATT
Found at i:1961033 original size:13 final size:13
Alignment explanation
Indices: 1961015--1961060 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
1961005 CAACGATCAA
1961015 CGGGTCAACGGGT
1 CGGGTCAACGGGT
1961028 CGGGTCAACGGGT
1 CGGGTCAACGGGT
*
1961041 CGGGTTAACGGGT
1 CGGGTCAACGGGT
1961054 CGGGTCA
1 CGGGTCA
1961061 GGTATACGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.15, C:0.22, G:0.46, T:0.17
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:1961070 original size:26 final size:27
Alignment explanation
Indices: 1961014--1961072 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
1961004 TCAACGATCA
*
1961014 ACGGGTCAACGGGTCGGGTCAACGGGT
1 ACGGGTCAACGGGTCGGGTCAACGGAT
*
1961041 -CGGGTTAACGGGTCGGGTC-A-GGTAT
1 ACGGGTCAACGGGTCGGGTCAACGG-AT
1961066 ACGGGTC
1 ACGGGTC
1961073 GGGCTGGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
24 2 0.07
25 2 0.07
26 23 0.85
ACGTcount: A:0.17, C:0.20, G:0.44, T:0.19
Consensus pattern (27 bp):
ACGGGTCAACGGGTCGGGTCAACGGAT
Found at i:1969412 original size:272 final size:266
Alignment explanation
Indices: 1968780--1969329 Score: 695
Period size: 272 Copynumber: 2.0 Consensus size: 266
1968770 GGATGATAAA
* ** * * * * *
1968780 ACCAACTCTAGGACTTACTTCATTGAAATCCTTGAATACACAATTGTATGTTTTCCATGCTTAAG
1 ACCAACGCTAGGACTCCCTTCATTGAAATCCTGGAATACACAAGTGTATG-GTCCCATGCGTAAG
* ** *
1968845 AAACTTAGAAATTTTTTATAAAAGAATTATTAAAATTGTGGCATAAAATTTTGAATGATGAAAAA
65 --AC-TAGAAA-TGTAAAGAAAAGAATTATTAAAATTGTGGCATAAAATTTTGAATGATGAAAAA
1968910 CCCACTAAAAATGAAAAAAAAATAAATGAAAAAAATGAAGTTGTGAATAAATGCCTCGTATATCT
126 CCCACTAAAAATGAAAAAAAAATAAATGAAAAAAATGAAGTTGTGAATAAATGCCTCGTATATCT
1968975 GTAGAGGAATACTCCGCTATGCAGGGTATAAGTGAATGCAAGTAGTCACGGGATGACTCTACACT
191 GTAGAGGAATACTCCGCTATGCAGGGTATAAGTGAATGCAAGTAGTCACGGGATGACTCTACACT
*
1969040 AGCTTGGGGGT
256 AGCTCGGGGGT
* ** * * * * *
1969051 AACCAACTCTAGGACTTGCTTCATTGAAATCCTTGAATACACAATTGTATGTTTCCATGCTTAAG
1 -ACCAACGCTAGGACTCCCTTCATTGAAATCCTGGAATACACAAGTGTATGGTCCCATGCGTAAG
* ** *
1969116 AAACTTAGAAATTTTTATAAAAGAATTATTAAAATGTTGTGGCATAAAATTTTGAATGATGAAAA
65 --AC-TAGAAATGTAAAGAAAAGAATTATTAAAA--TTGTGGCATAAAATTTTGAATGATGAAAA
1969181 ACCCACTAAAAATGAAAAAAAAATAAATGAAAAAAATGAAGTTGTGAATAAATGCCTCGGTATAT
125 ACCCACTAAAAATGAAAAAAAAATAAATGAAAAAAATGAAGTTGTGAATAAATGCCTC-GTATAT
* *
1969246 CTGTAGAGGGATACTCCGCTATGCCAGGGTATATAAGTGAATGCAAGTAGTCATGGGATGACTCT
189 CTGTAGAGGAATACTCCGCTATG-CAGGG--TATAAGTGAATGCAAGTAGTCACGGGATGACTCT
1969311 ACATGACTAGCTCGGGGGT
251 AC---ACTAGCTCGGGGGT
1969330 GGAAGGTATG
Statistics
Matches: 265, Mismatches: 4, Indels: 11
0.95 0.01 0.04
Matches are distributed among these distances:
270 23 0.09
271 25 0.09
272 136 0.51
273 28 0.11
274 5 0.02
276 35 0.13
279 13 0.05
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (266 bp):
ACCAACGCTAGGACTCCCTTCATTGAAATCCTGGAATACACAAGTGTATGGTCCCATGCGTAAGA
CTAGAAATGTAAAGAAAAGAATTATTAAAATTGTGGCATAAAATTTTGAATGATGAAAAACCCAC
TAAAAATGAAAAAAAAATAAATGAAAAAAATGAAGTTGTGAATAAATGCCTCGTATATCTGTAGA
GGAATACTCCGCTATGCAGGGTATAAGTGAATGCAAGTAGTCACGGGATGACTCTACACTAGCTC
GGGGGT
Found at i:1982402 original size:19 final size:19
Alignment explanation
Indices: 1982375--1982417 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
1982365 ACAAATACAT
*
1982375 TCCAGAGCATTTTTATAAG
1 TCCAAAGCATTTTTATAAG
1982394 TCCAAAGCATTTTTATAAG
1 TCCAAAGCATTTTTATAAG
1982413 TCCAA
1 TCCAA
1982418 TACATGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (19 bp):
TCCAAAGCATTTTTATAAG
Found at i:1984421 original size:8 final size:8
Alignment explanation
Indices: 1984410--1984451 Score: 75
Period size: 8 Copynumber: 5.2 Consensus size: 8
1984400 TAAATTGCCT
1984410 TTCCATTC
1 TTCCATTC
1984418 TTCCATTC
1 TTCCATTC
*
1984426 TTTCATTC
1 TTCCATTC
1984434 TTCCATTC
1 TTCCATTC
1984442 TTCCATTC
1 TTCCATTC
1984450 TT
1 TT
1984452 ATTAATTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (8 bp):
TTCCATTC
Found at i:1985309 original size:207 final size:209
Alignment explanation
Indices: 1984995--1985411 Score: 811
Period size: 207 Copynumber: 2.0 Consensus size: 209
1984985 CGTTTTCATA
*
1984995 GCCCAATGCACATTTAAGAGAATACAAGGTACGTGAGTAGAACATAATGTCCGCACTAAACACTG
1 GCCCAATGCACATTTAAGAGAATACAAGGTACGTGAGCAGAACATAATGTCCGCACTAAACACTG
1985060 CATACTGCCAATCATAGATCATCATAAGATGCACTCCAAGTTCAAATCATAACATATGAACCAAC
66 CATACTGCCAATCATAGATCATCATAAGATGCACTCCAAGTTCAAATCATAACATATGAACCAAC
1985125 AGTTCTAATCACAATGTACACGAATGTACCATAACTTAACTTGAATTTACTCAACTTAATGCATG
131 AGTTCTAATCACAATGTACACGAATGTACCATAACTTAACTTGAATTTACTCAACTTAATGCATG
1985190 CCAAATGTACCAAC
196 CCAAATGTACCAAC
1985204 GCCCAATGCACATTTAAGAGAATACAAGGTACGTGAGCAGAACATAATGTCCGC-CT-AACACTG
1 GCCCAATGCACATTTAAGAGAATACAAGGTACGTGAGCAGAACATAATGTCCGCACTAAACACTG
1985267 CATACTGCCAATCATAGATCATCATAAGATGCACTCCAAGTTCAAATCATAACATATGAACCAAC
66 CATACTGCCAATCATAGATCATCATAAGATGCACTCCAAGTTCAAATCATAACATATGAACCAAC
1985332 AGTTCTAATCACAATGTACACGAATGTACCATAACTTAACTTGAATTTACTCAACTTAATGCATG
131 AGTTCTAATCACAATGTACACGAATGTACCATAACTTAACTTGAATTTACTCAACTTAATGCATG
1985397 CCAAATGTACCAAC
196 CCAAATGTACCAAC
1985411 G
1 G
1985412 ACTCTCAATG
Statistics
Matches: 207, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
207 152 0.73
208 2 0.01
209 53 0.26
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (209 bp):
GCCCAATGCACATTTAAGAGAATACAAGGTACGTGAGCAGAACATAATGTCCGCACTAAACACTG
CATACTGCCAATCATAGATCATCATAAGATGCACTCCAAGTTCAAATCATAACATATGAACCAAC
AGTTCTAATCACAATGTACACGAATGTACCATAACTTAACTTGAATTTACTCAACTTAATGCATG
CCAAATGTACCAAC
Found at i:1993299 original size:12 final size:12
Alignment explanation
Indices: 1993270--1993304 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
1993260 ATATTATGAT
*
1993270 TTTTCAAATATTG
1 TTTTCAAA-ATAG
1993283 TTTTCAAAATAG
1 TTTTCAAAATAG
1993295 TTTTCAAAAT
1 TTTTCAAAAT
1993305 TTTGCCATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.49
Consensus pattern (12 bp):
TTTTCAAAATAG
Found at i:1995476 original size:65 final size:65
Alignment explanation
Indices: 1995312--1995459 Score: 260
Period size: 65 Copynumber: 2.3 Consensus size: 65
1995302 ACACTCTTGG
* * *
1995312 ATGCATCGATACACTCCTTGTTTTATTAAAACATCGAATGCATTCTGTGTACCGATGCACAGACA
1 ATGCATCGATACACTCCTAGTTTTATTAAAACATCGAATGCATTCTGTATACCAATGCACAGACA
*
1995377 ATGCATCGATACACTCCTAGTTTTATTAAAACATCGAATGCATTTTGTATACCAATGCACAGACA
1 ATGCATCGATACACTCCTAGTTTTATTAAAACATCGAATGCATTCTGTATACCAATGCACAGACA
1995442 ATGCATCGATACACTCCT
1 ATGCATCGATACACTCCT
1995460 GGCTCTTTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 79 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (65 bp):
ATGCATCGATACACTCCTAGTTTTATTAAAACATCGAATGCATTCTGTATACCAATGCACAGACA
Found at i:1995495 original size:65 final size:65
Alignment explanation
Indices: 1995312--1995502 Score: 217
Period size: 65 Copynumber: 2.9 Consensus size: 65
1995302 ACACTCTTGG
* * * * *
1995312 ATGCATCGATACACTCCTTGTTTTATTAAAACATCGAATGC-ATTCTGTGTACCGATGCACAGAC
1 ATGCATCGATACACTCCTAGTTTTATTAAAACATCAAATGCAAAT-AGTGTACCAATGCACAGAC
1995376 A
65 A
* ** * *
1995377 ATGCATCGATACACTCCTAGTTTTATTAAAACATCGAATGCATTTTGTATACCAATGCACAGACA
1 ATGCATCGATACACTCCTAGTTTTATTAAAACATCAAATGCAAATAGTGTACCAATGCACAGACA
* * *
1995442 ATGCATCGATACACTCCTGGCTCTTT-TT-AAACATCAAATGTAAATAGTGTACCAATACACA
1 ATGCATCGATACACTCCTAG-T-TTTATTAAAACATCAAATGCAAATAGTGTACCAATGCACA
1995503 TGGTGTGTAT
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
65 103 0.93
66 5 0.05
67 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (65 bp):
ATGCATCGATACACTCCTAGTTTTATTAAAACATCAAATGCAAATAGTGTACCAATGCACAGACA
Found at i:1997672 original size:19 final size:20
Alignment explanation
Indices: 1997650--1997694 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
1997640 AAAAAGGCCA
*
1997650 AATTTC-ACATTCTAACATC
1 AATTTCAACACTCTAACATC
*
1997669 AATTTCAACACTCTAACATT
1 AATTTCAACACTCTAACATC
1997689 AATTTC
1 AATTTC
1997695 CAGCATAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTTCAACACTCTAACATC
Found at i:2000421 original size:114 final size:112
Alignment explanation
Indices: 2000223--2000448 Score: 418
Period size: 114 Copynumber: 2.0 Consensus size: 112
2000213 CACGAGAATA
2000223 AATCACAAAACACATATTTCGAAGTATATGTTAGTATCATTAATAACATAATTGGAACATGTTAG
1 AATCACAAAACACATATTTCGAAGTATATGTTAGTATCATTAATAACATAATTGGAACATGTTAG
2000288 CATAAAATTTTATAAAATGCAATTAATACATATTTGATACTAATTTC
66 CATAAAATTTTATAAAATGCAATTAATACATATTTGATACTAATTTC
2000335 AATCACAAAACACATACATTTCGAAGTATATGTTAGTATCATTAATAACATAATTGGAACATGTT
1 AATCACAAAACACAT--ATTTCGAAGTATATGTTAGTATCATTAATAACATAATTGGAACATGTT
2000400 AGCATAAAA-TTTATAAAAATGCAATTAATACATATTTGATACTAATTTC
64 AGCATAAAATTTTAT-AAAATGCAATTAATACATATTTGATACTAATTTC
2000449 CTTTTCTGAT
Statistics
Matches: 111, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
112 15 0.14
113 5 0.05
114 91 0.82
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (112 bp):
AATCACAAAACACATATTTCGAAGTATATGTTAGTATCATTAATAACATAATTGGAACATGTTAG
CATAAAATTTTATAAAATGCAATTAATACATATTTGATACTAATTTC
Found at i:2004644 original size:31 final size:31
Alignment explanation
Indices: 2004608--2004675 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
2004598 TCAGAAAACA
* *
2004608 TAAGATATTG-TCACTTTTGCTTTTATTTAAT
1 TAAGATA-TGATCACTTTCGCTTTTAATTAAT
*
2004639 TAAGATATGATCACTTTCGTTTTTAATTAAT
1 TAAGATATGATCACTTTCGCTTTTAATTAAT
2004670 TAAGAT
1 TAAGAT
2004676 GTGGTCATCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 2 0.06
31 31 0.94
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (31 bp):
TAAGATATGATCACTTTCGCTTTTAATTAAT
Found at i:2004839 original size:27 final size:27
Alignment explanation
Indices: 2004802--2004865 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
2004792 CATAAAATAT
2004802 ATATTTTTAAATGAAAATAAAAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
* ** *
2004829 ATATTTTTAAATTAAGTTAATAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
*
2004856 ATATATTTAA
1 ATATTTTTAA
2004866 TAAGTGAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (27 bp):
ATATTTTTAAATGAAAATAAAAATAAA
Found at i:2005740 original size:31 final size:32
Alignment explanation
Indices: 2005678--2005752 Score: 109
Period size: 31 Copynumber: 2.4 Consensus size: 32
2005668 TAACCTGTGA
2005678 TGACCACT-TCTTAATTAAATAAAAAACGAAAG
1 TGACCA-TATCTTAATTAAATAAAAAACGAAAG
*
2005710 TGACCATATCTTAATTAAAT-AAAAATGAAAG
1 TGACCATATCTTAATTAAATAAAAAACGAAAG
*
2005741 TGATCATATCTT
1 TGACCATATCTT
2005753 GTGTTTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
31 22 0.55
32 18 0.45
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (32 bp):
TGACCATATCTTAATTAAATAAAAAACGAAAG
Found at i:2007250 original size:26 final size:23
Alignment explanation
Indices: 2007186--2007244 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
2007176 TCGGTTATCG
*
2007186 ATTTTTTGGATCGATTTTCGATT
1 ATTTTTTAGATCGATTTTCGATT
2007209 ATTTTTTAGATCGATTTTCGATT
1 ATTTTTTAGATCGATTTTCGATT
2007232 ATTATTTTTAGAT
1 A-T-TTTTTAGAT
2007245 AGGATTGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 23 0.70
24 1 0.03
25 9 0.27
ACGTcount: A:0.22, C:0.07, G:0.14, T:0.58
Consensus pattern (23 bp):
ATTTTTTAGATCGATTTTCGATT
Found at i:2008469 original size:21 final size:21
Alignment explanation
Indices: 2008445--2008488 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
2008435 ATGTGAATCA
*
2008445 CATTGCGATTTTCTAAATTCG
1 CATTGCGATTTTCCAAATTCG
2008466 CATTGCGATTTTCCAAATTCG
1 CATTGCGATTTTCCAAATTCG
2008487 CA
1 CA
2008489 ACGCGAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
CATTGCGATTTTCCAAATTCG
Found at i:2008494 original size:21 final size:21
Alignment explanation
Indices: 2008449--2008494 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
2008439 GAATCACATT
* **
2008449 GCGATTTTCTAAATTCGCATT
1 GCGATTTTCCAAATTCGCAAC
2008470 GCGATTTTCCAAATTCGCAAC
1 GCGATTTTCCAAATTCGCAAC
2008491 GCGA
1 GCGA
2008495 ATTTGTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (21 bp):
GCGATTTTCCAAATTCGCAAC
Found at i:2008504 original size:21 final size:21
Alignment explanation
Indices: 2008378--2008510 Score: 67
Period size: 20 Copynumber: 6.5 Consensus size: 21
2008368 AATGACCAAC
* *
2008378 AAATTCGCAACGCGAA-CTCC
1 AAATTCGCAACGCGAATTTCT
* * * *
2008398 AATTTCGCAAC-CCAGTTTCC
1 AAATTCGCAACGCGAATTTCT
* * *
2008418 AAATTCACAACGCGAATATGT
1 AAATTCGCAACGCGAATTTCT
* * ** *
2008439 GAA-TCACATTGCGATTTTCT
1 AAATTCGCAACGCGAATTTCT
** * *
2008459 AAATTCGCATTGCGATTTTCC
1 AAATTCGCAACGCGAATTTCT
*
2008480 AAATTCGCAACGCGAATTTGT
1 AAATTCGCAACGCGAATTTCT
2008501 AAA-TCGCAAC
1 AAATTCGCAAC
2008511 ACAGAAGTCA
Statistics
Matches: 85, Mismatches: 25, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
19 2 0.02
20 43 0.51
21 40 0.47
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (21 bp):
AAATTCGCAACGCGAATTTCT
Found at i:2008527 original size:20 final size:20
Alignment explanation
Indices: 2008504--2008542 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
2008494 AATTTGTAAA
2008504 TCGCAACACAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
*
2008524 TCGCAACACAGAATTCAAA
1 TCGCAACACAGAAGTCAAA
2008543 GCGCGTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15
Consensus pattern (20 bp):
TCGCAACACAGAAGTCAAAT
Found at i:2009097 original size:20 final size:20
Alignment explanation
Indices: 2009069--2009121 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
2009059 GCGAATTTAG
*
2009069 TTTCACGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
2009089 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
*
2009109 TTTCGCATTGCGA
1 TTTCGCGTTGCGA
2009122 ATTTAAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.47
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTCAT
Found at i:2009132 original size:20 final size:20
Alignment explanation
Indices: 2009059--2009132 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
2009049 AAATCGCAAC
*
2009059 GCGAATTT-AGTTTCACGTT
1 GCGAATTTCAGTTTCGCGTT
* *
2009078 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAGTTTCGCGTT
* * *
2009098 GCGATTTTCATTTTCGCATT
1 GCGAATTTCAGTTTCGCGTT
*
2009118 GCGAATTTAAGTTTC
1 GCGAATTTCAGTTTC
2009133 AGAAACTACT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
19 7 0.15
20 40 0.85
ACGTcount: A:0.18, C:0.18, G:0.19, T:0.46
Consensus pattern (20 bp):
GCGAATTTCAGTTTCGCGTT
Found at i:2011295 original size:21 final size:21
Alignment explanation
Indices: 2011269--2011380 Score: 115
Period size: 21 Copynumber: 5.4 Consensus size: 21
2011259 TGCACCTGTC
*
2011269 ATCGTTCAAGAGGCGCCTCCT
1 ATCGTTCAAGAGGCCCCTCCT
2011290 ATCGTTCAAGAGGCCCCT-CT
1 ATCGTTCAAGAGGCCCCTCCT
*
2011310 CATCGTTCAAGAGGCCCCTCCC
1 -ATCGTTCAAGAGGCCCCTCCT
*
2011332 A-CGGTTCAAGAGGCCCCT-GT
1 ATC-GTTCAAGAGGCCCCTCCT
* *
2011352 CATCGTTC-AGAGGTCCCTCCC
1 -ATCGTTCAAGAGGCCCCTCCT
*
2011373 ACCGTTCA
1 ATCGTTCA
2011381 GAGCCCGATT
Statistics
Matches: 76, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
20 18 0.24
21 56 0.74
22 2 0.03
ACGTcount: A:0.19, C:0.38, G:0.21, T:0.22
Consensus pattern (21 bp):
ATCGTTCAAGAGGCCCCTCCT
Found at i:2011314 original size:42 final size:42
Alignment explanation
Indices: 2011267--2011380 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 42
2011257 GATGCACCTG
* *
2011267 TCATCGTTCAAGAGGCGCCTCCTATC-GTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCCCA-CGGTTCAAGAGGCCCCTC
*
2011309 TCATCGTTCAAGAGGCCCCTCCCACGGTTCAAGAGGCCCCTG
1 TCATCGTTCAAGAGGCCCCTCCCACGGTTCAAGAGGCCCCTC
* *
2011351 TCATCGTTC-AGAGGTCCCTCCCACCGTTCA
1 TCATCGTTCAAGAGGCCCCTCCCACGGTTCA
2011381 GAGCCCGATT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 20 0.30
42 46 0.70
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.23
Consensus pattern (42 bp):
TCATCGTTCAAGAGGCCCCTCCCACGGTTCAAGAGGCCCCTC
Found at i:2011906 original size:16 final size:17
Alignment explanation
Indices: 2011885--2011917 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2011875 GAAGCGTTTG
*
2011885 TGATTGGGA-TTGATTT
1 TGATTGCGATTTGATTT
2011901 TGATTGCGATTTGATTT
1 TGATTGCGATTTGATTT
2011918 CCTTTTGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (17 bp):
TGATTGCGATTTGATTT
Found at i:2013333 original size:24 final size:24
Alignment explanation
Indices: 2013299--2013352 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
2013289 CTGAAACATC
2013299 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
2013323 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
2013347 ATCAAA
1 ATCAAA
2013353 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:2013366 original size:24 final size:24
Alignment explanation
Indices: 2013299--2013368 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
2013289 CTGAAACATC
* * *
2013299 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
2013323 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
2013347 ATCAAATTTCGAATACTGACCA
1 ATCAAAGTCCGAATACTGACCA
2013369 GTACTCACAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:2014293 original size:20 final size:20
Alignment explanation
Indices: 2014268--2014380 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
2014258 AAAGATTTGT
*
2014268 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTTGAAAATCGA
2014288 GTTGCGAATTT-AAAATTC-A
1 GTTGCGAATTTGAAAA-TCGA
* *
2014307 GTTGCGAATTTGAAATTCAGT
1 GTTGCGAATTTGAAAATC-GA
** *
2014328 GTTGCGAATTTGGCAATCGC
1 GTTGCGAATTTGAAAATCGA
** *
2014348 GTTGCGAATTTGGCAATCGC
1 GTTGCGAATTTGAAAATCGA
*
2014368 GTTACGAATTTGA
1 GTTGCGAATTTGA
2014381 CTTCTTCGTT
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
19 18 0.22
20 47 0.59
21 15 0.19
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (20 bp):
GTTGCGAATTTGAAAATCGA
Found at i:2014309 original size:19 final size:19
Alignment explanation
Indices: 2014268--2014338 Score: 81
Period size: 19 Copynumber: 3.6 Consensus size: 19
2014258 AAAGATTTGT
*
2014268 GTTGCGAATTCGAAAA-TCGA
1 GTTGCGAATT-TAAAATTC-A
2014288 GTTGCGAATTTAAAATTCA
1 GTTGCGAATTTAAAATTCA
*
2014307 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTAAAATTCA
2014326 GTGTTGCGAATTT
1 --GTTGCGAATTT
2014339 GGCAATCGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
19 23 0.50
20 12 0.26
21 11 0.24
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (19 bp):
GTTGCGAATTTAAAATTCA
Found at i:2019239 original size:18 final size:18
Alignment explanation
Indices: 2019213--2019247 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2019203 ACACCAAATT
2019213 TCAAGAATACTTTTAATC
1 TCAAGAATACTTTTAATC
*
2019231 TCAATAATACTTTTAAT
1 TCAAGAATACTTTTAAT
2019248 AGACAATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.14, G:0.03, T:0.43
Consensus pattern (18 bp):
TCAAGAATACTTTTAATC
Found at i:2020520 original size:22 final size:22
Alignment explanation
Indices: 2020495--2020538 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
2020485 GGTTAAGTGG
2020495 TTTAACAATTTTAATCATTTTC
1 TTTAACAATTTTAATCATTTTC
2020517 TTTAACAATTTTAATCATTTTC
1 TTTAACAATTTTAATCATTTTC
2020539 GAAGATGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTAACAATTTTAATCATTTTC
Found at i:2021402 original size:22 final size:22
Alignment explanation
Indices: 2021377--2021420 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
2021367 GGTTAAGTGG
2021377 TTTAACAATTTTAATCATTTTC
1 TTTAACAATTTTAATCATTTTC
2021399 TTTAACAATTTTAATCATTTTC
1 TTTAACAATTTTAATCATTTTC
2021421 GAAGATGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTAACAATTTTAATCATTTTC
Found at i:2022129 original size:18 final size:18
Alignment explanation
Indices: 2022106--2022142 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2022096 AATGAATTTT
*
2022106 GAGGAAGTGGTGGAACAC
1 GAGGAAGTGCTGGAACAC
*
2022124 GAGGAAGTGCTGGACCAC
1 GAGGAAGTGCTGGAACAC
2022142 G
1 G
2022143 CGGAGCGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.16, G:0.43, T:0.11
Consensus pattern (18 bp):
GAGGAAGTGCTGGAACAC
Found at i:2023560 original size:26 final size:26
Alignment explanation
Indices: 2023524--2023575 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2023514 TCTTCTGAGT
2023524 CGGTGTTATCATATTCAATAGCAATA
1 CGGTGTTATCATATTCAATAGCAATA
2023550 CGGTGTTATCATATTCAATAGCAATA
1 CGGTGTTATCATATTCAATAGCAATA
2023576 GACAATGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (26 bp):
CGGTGTTATCATATTCAATAGCAATA
Found at i:2027494 original size:27 final size:27
Alignment explanation
Indices: 2027459--2027512 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
2027449 GGTTTTGAAA
2027459 GGGTAATGGTGCTGGGAAGTGAAAATG
1 GGGTAATGGTGCTGGGAAGTGAAAATG
*
2027486 GGGTAATGGTGCTGGGTAGTGAAAATG
1 GGGTAATGGTGCTGGGAAGTGAAAATG
2027513 TTCCGGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.04, G:0.44, T:0.24
Consensus pattern (27 bp):
GGGTAATGGTGCTGGGAAGTGAAAATG
Found at i:2028576 original size:16 final size:15
Alignment explanation
Indices: 2028550--2028585 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
2028540 TTGAAATTTG
*
2028550 AAATGTTAAAAGTTA
1 AAATGTTAAAAGTCA
2028565 AAATGCTTAAAAGTCA
1 AAATG-TTAAAAGTCA
2028581 AAATG
1 AAATG
2028586 ATTATTTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.53, C:0.06, G:0.14, T:0.28
Consensus pattern (15 bp):
AAATGTTAAAAGTCA
Found at i:2036596 original size:21 final size:21
Alignment explanation
Indices: 2036567--2036629 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
2036557 TGGGTGGAAA
*
2036567 TATGACAAACAATATCGGTACC
1 TATG-CAAACAATATCGATACC
*
2036589 TATGCAAACATTATCGATACC
1 TATGCAAACAATATCGATACC
* *
2036610 TATGCAAGCAGTATCGATAC
1 TATGCAAACAATATCGATAC
2036630 TGATGGGGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 33 0.89
22 4 0.11
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (21 bp):
TATGCAAACAATATCGATACC
Found at i:2037608 original size:81 final size:79
Alignment explanation
Indices: 2037337--2037570 Score: 371
Period size: 80 Copynumber: 2.9 Consensus size: 79
2037327 ACTGTTCTAA
* * *
2037337 AGTAAAAGATTAATGGCATAGCTATGCATTTGGAAGAAATGTGTCAATT-TGCCAGTTAGATGAA
1 AGTAAAAGATTAAT-GCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATG-CAGTTAGATGAA
2037401 AGGTTAAATACCTTTG
64 AGGTTAAATACCTTTG
2037417 AGTAAAAGATTAATGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGTCAGTTAGATGAAA
1 AGTAAAAGATTAATGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATG-CAGTTAGATGAAA
2037482 GGTTAAATACCTTTG
65 GGTTAAATACCTTTG
*
2037497 AGTAAAAGATTAATGACCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCAAGTTAGATGAA
1 AGTAAAAGATTAATG-CCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGC-AGTTAGATGAA
*
2037562 AGGGTAAAT
64 AGGTTAAAT
2037571 GTTTTTGGGT
Statistics
Matches: 145, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
79 31 0.21
80 60 0.41
81 54 0.37
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (79 bp):
AGTAAAAGATTAATGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCAGTTAGATGAAAG
GTTAAATACCTTTG
Found at i:2040663 original size:55 final size:55
Alignment explanation
Indices: 2040306--2040646 Score: 556
Period size: 55 Copynumber: 6.2 Consensus size: 55
2040296 ATGTATGGTA
*
2040306 AATTTCCGTATGGGCACTATGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
1 AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
* * *
2040361 AATTTCCGTATGGGAACTGTGTGTGAAAAACTAAGAAATTGATAATAAGTTTATG
1 AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
*
2040416 AATTTCCGTATGGGCACTGTGTGTGCAAAACTTAGAAATTCATAATAAGTTTATG
1 AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
* * *
2040471 AATTTCTGTATGGGCACTATGTGTGCAAAACTAAGAAATTCATAATAAGTTTATA
1 AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
* *
2040526 AATTTTCATATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
1 AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
* * * *
2040581 AATTTCCGTATGAGTACTGTGTGTGCAAAACTAATAAAGTCATAATAAGTTTATG
1 AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
2040636 AATTTCCGTAT
1 AATTTCCGTAT
2040647 TGGTAGTGGA
Statistics
Matches: 263, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 263 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (55 bp):
AATTTCCGTATGGGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATG
Found at i:2060765 original size:22 final size:21
Alignment explanation
Indices: 2060723--2060762 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2060713 GAGTTTATTT
*
2060723 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
2060744 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
2060763 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:2065573 original size:20 final size:19
Alignment explanation
Indices: 2065531--2065599 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 19
2065521 AAAATGTTTT
** *
2065531 TATGAATAGTATTATACTA
1 TATGAATAGTACAATACTG
2065550 TATGAATAGTACCAATACTG
1 TATGAATAGTA-CAATACTG
2065570 TATGAATAGTATCAATACTG
1 TATGAATAGTA-CAATACTG
*
2065590 TGTGAATAGT
1 TATGAATAGT
2065600 GTCGATGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 11 0.25
20 33 0.75
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
TATGAATAGTACAATACTG
Found at i:2068388 original size:20 final size:20
Alignment explanation
Indices: 2068324--2068381 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
2068314 AAATATGTTT
*
2068324 TATGAATAGTATTG-TACTG
1 TATGAATAGTACTGATACTG
*
2068343 TATGAATAGTACCGATACTG
1 TATGAATAGTACTGATACTG
2068363 TATGAATAGTACTGATACT
1 TATGAATAGTACTGATACT
2068382 ATGTGAACAG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
19 12 0.34
20 23 0.66
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (20 bp):
TATGAATAGTACTGATACTG
Found at i:2079767 original size:31 final size:30
Alignment explanation
Indices: 2079732--2079812 Score: 74
Period size: 31 Copynumber: 2.6 Consensus size: 30
2079722 AAATTTAAAT
2079732 AAATTTAATGACTATTTTAATAGCTCAATA
1 AAATTTAATGACTATTTTAATAGCTCAATA
* * * *
2079762 CAAATTTGATGATCATTTTTCTAATAGTTTAATA
1 -AAATTTAATGA-C-TATTT-TAATAGCTCAATA
*
2079796 AAA-TTAATCACTATTTT
1 AAATTTAATGACTATTTT
2079813 GTATTAGTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
29 1 0.03
30 4 0.10
31 11 0.28
32 6 0.15
33 7 0.17
34 11 0.28
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (30 bp):
AAATTTAATGACTATTTTAATAGCTCAATA
Found at i:2081066 original size:60 final size:60
Alignment explanation
Indices: 2080894--2081066 Score: 172
Period size: 60 Copynumber: 2.9 Consensus size: 60
2080884 ATGTGTTTTC
* * * * * * *
2080894 AAACTACGACCCTCGTTTAAAATTGGTTCTTAAATTTTTGAATATGT-CAATTTTATTCCT
1 AAACTATGACCCTCATTTTAAATTGGTCCTTAAACTTTTGAATCT-TCCAATTTTATCCCT
* * * * * *
2080954 AAACTATGACTCTCATTCTAAATTAGACCTTAAACTTTT-AAACATTCTAATTTTATCCCT
1 AAACTATGACCCTCATTTTAAATTGGTCCTTAAACTTTTGAATC-TTCCAATTTTATCCCT
*
2081014 AAA-TCATGACCCTCATTTTAAATTGGTCCTCAAACTTTTGAATCTTCCAATTT
1 AAACT-ATGACCCTCATTTTAAATTGGTCCTTAAACTTTTGAATCTTCCAATTT
2081067 CAACCTAAAT
Statistics
Matches: 89, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
59 4 0.04
60 82 0.92
61 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (60 bp):
AAACTATGACCCTCATTTTAAATTGGTCCTTAAACTTTTGAATCTTCCAATTTTATCCCT
Found at i:2081555 original size:64 final size:64
Alignment explanation
Indices: 2081478--2081605 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
2081468 GGTGGGAGTT
2081478 GTAGTAATATTAATCTAAACCGTTAAATTTTAGGATATAAAGAAGCAAACGGTCAGGCCAAGGA
1 GTAGTAATATTAATCTAAACCGTTAAATTTTAGGATATAAAGAAGCAAACGGTCAGGCCAAGGA
2081542 GTAGTAATATTAATCTAAACCGTTAAATTTTAGGATATAAAGAAGCAAACGGTCAGGCCAAGGA
1 GTAGTAATATTAATCTAAACCGTTAAATTTTAGGATATAAAGAAGCAAACGGTCAGGCCAAGGA
2081606 AATTGGGAAG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (64 bp):
GTAGTAATATTAATCTAAACCGTTAAATTTTAGGATATAAAGAAGCAAACGGTCAGGCCAAGGA
Found at i:2082942 original size:2 final size:2
Alignment explanation
Indices: 2082882--2082930 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
2082872 AATTAAAATC
*
2082882 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2082923 AT AT AT AT
1 AT AT AT AT
2082931 CAATACATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:2091539 original size:36 final size:36
Alignment explanation
Indices: 2091499--2091616 Score: 110
Period size: 36 Copynumber: 3.2 Consensus size: 36
2091489 ACTCAAGATT
2091499 GTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACG
1 GTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACG
* * * * * ** **
2091535 GTTTTTACTCGAAACAAGAAGATTTATTTCACTCAAGATT
1 GTTTTT-CT--TAA-AACAAGATTTGTCTCGCTTGAGACG
*
2091575 GTTTTTCTTCAAACAAGATTTGTCTCGCTTGAGACG
1 GTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACG
2091611 GTTTTT
1 GTTTTT
2091617 ACTCGAAAGA
Statistics
Matches: 59, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
36 29 0.49
37 3 0.05
39 4 0.07
40 23 0.39
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (36 bp):
GTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACG
Found at i:2091542 original size:76 final size:75
Alignment explanation
Indices: 2091399--2091629 Score: 356
Period size: 76 Copynumber: 3.1 Consensus size: 75
2091389 TCATTTAATA
* * ** * *
2091399 AAGAGGATTTATCTCACTTGAGATTGTTTTTCTTAAAC-AGACTTTGTCTCACTTGAGACAGTTT
1 AAGAAGATTTATTTCACTCAAGATTGTTTTTCTTAAACAAGA-TTTGTCTCGCTTGAGACGGTTT
2091463 TTACTCGAAAC
65 TTACTCGAAAC
*
2091474 AATAAGATTTATTTCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACGGTTT
1 AAGAAGATTTATTTCACTCAAGATTGTTTTTCTT-AAACAAGATTTGTCTCGCTTGAGACGGTTT
2091539 TTACTCGAAAC
65 TTACTCGAAAC
2091550 AAGAAGATTTATTTCACTCAAGATTGTTTTTCTTCAAACAAGATTTGTCTCGCTTGAGACGGTTT
1 AAGAAGATTTATTTCACTCAAGATTGTTTTTCTT-AAACAAGATTTGTCTCGCTTGAGACGGTTT
*
2091615 TTACTCGAAAG
65 TTACTCGAAAC
2091626 AAGA
1 AAGA
2091630 CATTTCATTT
Statistics
Matches: 144, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
75 29 0.20
76 112 0.78
77 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (75 bp):
AAGAAGATTTATTTCACTCAAGATTGTTTTTCTTAAACAAGATTTGTCTCGCTTGAGACGGTTTT
TACTCGAAAC
Found at i:2091579 original size:40 final size:38
Alignment explanation
Indices: 2091459--2091592 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 38
2091449 ACTTGAGACA
*
2091459 GTTTTTACTCGAAACAATAAGATTTATTTCACTCAAGATT
1 GTTTTT-CTC-AAACAAGAAGATTTATTTCACTCAAGATT
* * * * * ** **
2091499 GTTTTTCT-TAA-AACAAGATTTGTCTCGCTTGAGACG
1 GTTTTTCTCAAACAAGAAGATTTATTTCACTCAAGATT
2091535 GTTTTTACTCGAAACAAGAAGATTTATTTCACTCAAGATT
1 GTTTTT-CTC-AAACAAGAAGATTTATTTCACTCAAGATT
2091575 GTTTTTCTTCAAACAAGA
1 GTTTTTC-TCAAACAAGA
2091593 TTTGTCTCGC
Statistics
Matches: 71, Mismatches: 18, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
36 23 0.32
37 4 0.06
39 13 0.18
40 31 0.44
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (38 bp):
GTTTTTCTCAAACAAGAAGATTTATTTCACTCAAGATT
Found at i:2091801 original size:39 final size:39
Alignment explanation
Indices: 2091656--2092092 Score: 573
Period size: 39 Copynumber: 11.3 Consensus size: 39
2091646 TTATTTTTAA
2091656 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
2091695 AAAA-AATTTATCTCGCTTGAGATAGTTTCCCTCTAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
2091733 AAAAGA-TTTATCTTGCTTGAGATAGTTTCCCTCAAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
2091771 AGAAGATTTTGTCTCGCTTGAGATAATTTCCCTCGAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
2091810 AGAAGA-TTTATCTCGTTTGAGATAGTTTCCCTTGAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
2091848 ATAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
2091887 AGAAGATTTATATCT--CTTGAGATAGTTTCCCTGGAAAC
1 AAAAGATTT-TATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
2091925 AGAAA-AGTTTATCTCGCTTGAGATATTTTCCCTTGAAAT
1 A-AAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
2091964 AAAAGATTTTATCTCACTTGAGATAGTTTACCTTGAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
2092003 AAAAGATTTTGTCTCGCTTGAGATAATTTCCCT-GAAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCG-AAAC
* * *
2092042 ATAAGATTTTATCTCGCTTGAGATAGTTTCTCTCAAAAC
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
2092081 AAAAGATTTTAT
1 AAAAGATTTTAT
2092093 AAGAAAATAC
Statistics
Matches: 350, Mismatches: 38, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
37 5 0.01
38 134 0.38
39 206 0.59
40 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (39 bp):
AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:2091801 original size:77 final size:78
Alignment explanation
Indices: 2091656--2092092 Score: 573
Period size: 77 Copynumber: 5.7 Consensus size: 78
2091646 TTATTTTTAA
* *
2091656 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAA-AATTTATCTCGCTTGAGATAG
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGCTTGAGATAA
*
2091720 TTTCCCTCTAAAC
66 TTTCCCTCGAAAC
* * * *
2091733 AAAAGA-TTTATCTTGCTTGAGATAGTTTCCCTCAAAACAGAAGATTTTGTCTCGCTTGAGATAA
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGCTTGAGATAA
2091797 TTTCCCTCGAAAC
66 TTTCCCTCGAAAC
* * * * *
2091810 AGAAGA-TTTATCTCGTTTGAGATAGTTTCCCTTGAAACATAAGATTTTATCTCGCTTGAGATAG
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGCTTGAGATAA
2091874 TTTCCCTCGAAAC
66 TTTCCCTCGAAAC
* * *
2091887 AGAAGATTTATATCT--CTTGAGATAGTTTCCCTGGAAACAGAAA-AGTTTATCTCGCTTGAGAT
1 AAAAGATTT-TATCTCGCTTGAGATAGTTTCCCTCGAAACA-AAAGATTTTATCTCGCTTGAGAT
* * *
2091949 ATTTTCCCTTGAAAT
64 AATTTCCCTCGAAAC
* * * *
2091964 AAAAGATTTTATCTCACTTGAGATAGTTTACCTTGAAACAAAAGATTTTGTCTCGCTTGAGATAA
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGCTTGAGATAA
2092029 TTTCCCT-GAAAAC
66 TTTCCCTCG-AAAC
* * *
2092042 ATAAGATTTTATCTCGCTTGAGATAGTTTCTCTCAAAACAAAAGATTTTAT
1 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTAT
2092093 AAGAAAATAC
Statistics
Matches: 316, Mismatches: 36, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
76 38 0.12
77 175 0.55
78 98 0.31
79 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (78 bp):
AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGCTTGAGATAA
TTTCCCTCGAAAC
Found at i:2097542 original size:22 final size:22
Alignment explanation
Indices: 2097516--2097570 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
2097506 CCTAAAGAGT
* * *
2097516 GGTATCGGTACTGGTTGAAAGG
1 GGTATCGATACTAGTTGAAAAG
2097538 GGTATCGATACTAGTTGAAAAG
1 GGTATCGATACTAGTTGAAAAG
2097560 GGTATCGATAC
1 GGTATCGATAC
2097571 CAAGTATCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.29, C:0.11, G:0.33, T:0.27
Consensus pattern (22 bp):
GGTATCGATACTAGTTGAAAAG
Found at i:2103101 original size:29 final size:29
Alignment explanation
Indices: 2103021--2103103 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 29
2103011 CTTCCCAGCA
* *
2103021 TAGGTCGCCATGC-C-CTTCGGGCGACCTTG
1 TAGGTCGCCATGCACGC-T-GGGCGACATGG
** **
2103050 TAGGTCGCCATATACGCCAGGCGACATGG
1 TAGGTCGCCATGCACGCTGGGCGACATGG
2103079 TAGGTCGCCATGCACGCTGGGCGAC
1 TAGGTCGCCATGCACGCTGGGCGAC
2103104 TTTGTCCTGC
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
29 40 0.95
30 1 0.02
31 1 0.02
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (29 bp):
TAGGTCGCCATGCACGCTGGGCGACATGG
Found at i:2103221 original size:31 final size:31
Alignment explanation
Indices: 2103186--2103247 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
2103176 CATGGCCCAT
2103186 GCAAAGCTTCATCCTCTCACCACAGCACGTA
1 GCAAAGCTTCATCCTCTCACCACAGCACGTA
* *
2103217 GCAAAGCTTCATCCTCTCGCCACAGCTCGTA
1 GCAAAGCTTCATCCTCTCACCACAGCACGTA
2103248 TAGAACACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.26, C:0.39, G:0.15, T:0.21
Consensus pattern (31 bp):
GCAAAGCTTCATCCTCTCACCACAGCACGTA
Done.