genome.fa.s7791.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007791.1 Hibiscus syriacus cultivar Beakdansim tig00110077_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59398

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13973--14009	16	2.4	15	86	8	56	21	10	5	62	1.48
15968--16015	13	3.7	13	91	5	71	31	18	14	35	1.91
15968--16022	13	4.2	13	88	0	65	29	20	14	36	1.92
16174--16209	2	18.0	2	100	0	72	50	0	0	50	1.00
20803--21149	59	5.9	59	90	1	527	35	19	12	33	1.89
20804--21150	117	2.9	117	88	2	525	35	19	11	33	1.88
23102--23235	29	4.6	28	85	6	169	53	8	3	33	1.50
23102--23235	58	2.3	58	88	2	189	53	8	3	33	1.50
23132--23265	29	4.6	29	87	5	164	55	10	2	31	1.46
23021--23264	87	2.8	84	74	11	206	52	7	5	33	1.54
23102--23266	29	5.7	29	82	9	160	53	9	4	32	1.52
34929--34953	13	1.9	13	100	0	50	44	8	8	40	1.63
38074--38144	34	2.1	34	82	7	83	23	25	15	35	1.94
38611--38680	36	1.9	37	85	2	97	25	18	28	27	1.98
43117--43638	59	9.0	59	86	6	726	36	19	10	33	1.86
43117--43638	228	2.2	231	88	5	759	36	19	10	33	1.86
46197--46250	21	2.6	21	100	0	108	20	16	33	29	1.95
46281--46332	20	2.5	21	81	3	61	40	19	23	17	1.91
46322--46393	20	3.6	20	90	0	108	26	27	20	25	1.99
46910--46976	19	3.5	19	83	2	89	50	23	16	8	1.73
46972--47136	19	9.1	19	72	15	125	13	23	20	43	1.87
47024--47111	33	2.6	33	92	5	142	13	27	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47090--47136	20	2.3	20	79	13	60	12	25	14	46	1.80
49046--49133	42	2.1	42	80	2	106	21	37	17	23	1.94
50512--50547	14	2.6	14	95	0	63	30	0	25	44	1.54
50654--50712	19	3.4	18	71	22	54	44	22	22	11	1.85
50654--50743	33	2.7	33	92	0	144	42	22	22	13	1.88
50654--50739	14	5.1	18	68	24	62	44	20	22	12	1.85
50743--50867	33	3.8	32	81	8	162	15	21	19	44	1.87
50736--50867	66	2.0	66	92	0	219	16	21	18	43	1.88
53129--53163	11	3.1	11	95	4	61	2	28	0	68	1.04
53130--53164	12	3.0	12	95	4	63	5	25	0	68	1.11
54381--54418	20	1.9	20	94	0	67	39	23	21	15	1.92
54440--54466	14	1.9	14	100	0	54	14	22	14	48	1.81
54449--54503	18	2.9	19	91	5	94	14	21	14	49	1.79
56505--56558	20	2.7	20	88	0	81	37	24	24	14	1.93
56545--56633	31	2.8	33	84	6	119	48	25	15	10	1.77
56561--56617	14	3.9	14	72	20	53	49	26	15	8	1.74
56634--56719	32	2.7	32	90	5	138	12	18	20	47	1.81
56708--56751	20	2.2	20	84	4	54	18	22	20	38	1.93
56696--56761	19	3.4	19	75	4	60	15	19	24	40	1.90
57238--57282	18	2.5	18	88	0	72	13	15	44	26	1.83
58590--58662	19	3.8	20	78	5	69	46	21	16	15	1.83
58590--58652	20	3.2	20	79	4	74	47	20	17	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59116--59183	20	3.4	20	93	0	109	26	19	29	25	1.98
59194--59286	20	4.6	20	78	4	96	17	23	18	40	1.90
59194--59286	41	2.3	41	98	0	177	17	23	18	40	1.90

Tables:   1

The End!