genome.fa.s7792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007792.1 Hibiscus syriacus cultivar Beakdansim tig00110078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169149

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11125--11177	8	6.5	8	87	10	63	79	0	7	13	0.93
12104--12343	55	4.4	55	85	3	317	31	15	25	27	1.96
12121--12575	54	8.4	54	82	9	326	30	18	25	25	1.98
12275--12649	54	6.9	54	86	4	368	31	20	24	23	1.98
12921--12954	8	4.2	8	92	0	59	58	0	2	38	1.13
19199--19270	31	2.3	31	82	0	81	34	13	23	27	1.93
21311--21389	32	2.5	31	81	2	86	41	2	7	48	1.45
46075--46175	49	2.0	50	98	1	195	46	3	9	39	1.56
56099--56199	49	2.0	50	98	1	195	46	3	9	39	1.56
56996--57066	21	3.4	21	72	14	65	39	21	16	22	1.92
56993--57086	42	2.2	42	90	3	145	38	22	15	23	1.93
57171--57242	20	3.5	20	88	1	99	19	22	26	31	1.97
68987--69100	20	5.7	20	77	6	95	33	23	16	26	1.96
68984--69100	61	1.9	61	82	0	144	35	23	16	25	1.95
69646--69690	19	2.4	19	92	0	72	48	26	15	8	1.74
69686--69812	20	7.1	19	68	20	67	14	25	18	41	1.88
69700--69787	33	2.6	33	92	1	149	13	27	20	38	1.90
71902--72077	42	4.2	42	78	1	192	21	37	17	23	1.94
71902--72077	84	2.1	84	97	0	334	21	37	17	23	1.94
71902--72107	42	4.9	42	72	11	138	22	36	17	23	1.95
71902--72107	84	2.5	84	91	1	279	22	36	17	23	1.95
73464--73499	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73606--73672	19	3.8	19	75	18	72	46	20	20	11	1.82
73681--73807	33	3.9	32	87	8	184	14	21	18	44	1.86
73681--73806	66	1.9	66	95	0	225	15	21	19	44	1.86
76102--76158	3	19.0	3	85	0	78	0	26	0	73	0.83
76098--76158	12	5.1	12	100	0	122	0	26	0	73	0.83
76333--76386	24	2.2	24	90	0	81	40	20	16	22	1.91
77392--77435	20	2.2	20	91	0	70	31	25	25	18	1.97
77506--77573	19	3.8	19	85	12	92	14	22	16	47	1.82
77709--77745	14	2.6	14	86	0	56	48	21	0	29	1.50
79614--79680	20	3.5	20	81	4	75	38	23	22	14	1.92
79670--79759	14	5.8	14	70	25	65	45	23	17	13	1.84
79654--79764	32	3.4	32	91	2	186	45	22	18	13	1.85
79654--79775	65	1.9	65	91	3	201	45	23	18	13	1.84
79771--79852	18	4.6	19	76	14	95	13	19	20	46	1.83
79837--79880	20	2.2	20	88	4	63	18	25	20	36	1.95
79846--79891	20	2.3	20	84	0	56	17	21	23	36	1.94
80330--80374	18	2.5	18	88	0	72	13	15	44	26	1.83
81668--81721	20	2.7	20	88	0	81	38	25	18	16	1.92
81962--82005	22	2.0	22	100	0	88	22	13	40	22	1.89
82173--82286	41	2.8	41	82	4	142	23	17	23	35	1.95
82234--82287	20	2.7	20	97	0	99	25	18	24	31	1.97
82173--82290	61	1.9	62	86	5	168	22	16	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82173--82308	61	2.2	61	81	6	150	22	19	22	36	1.95
82405--82450	19	2.3	20	81	7	58	21	17	32	28	1.96
83630--83663	16	2.1	16	94	0	59	58	0	14	26	1.36
85428--85469	21	2.0	21	90	0	66	38	23	7	30	1.82
87989--88079	20	4.5	20	79	8	94	40	16	17	25	1.90
88073--88120	21	2.3	21	86	10	64	41	27	10	20	1.85
88104--88306	20	9.8	20	76	10	167	26	24	17	32	1.97
88325--88368	20	2.2	20	100	0	88	31	18	22	27	1.97
88104--88350	127	1.9	126	83	6	311	26	23	17	31	1.97
88409--88446	20	1.9	20	88	0	58	28	21	18	31	1.97
88500--88591	20	4.6	20	84	0	103	33	11	26	28	1.92
88497--88606	40	2.7	41	80	5	116	32	12	25	29	1.93
88553--88606	21	2.6	21	79	2	65	33	11	25	29	1.91
88654--88693	21	1.9	21	89	0	62	25	15	27	32	1.95
88888--88929	21	2.0	21	95	0	75	35	23	7	33	1.82
90911--90963	20	2.7	20	82	8	72	16	18	3	60	1.51
113275--113304	16	1.9	15	93	6	51	86	0	13	0	0.57
116864--116936	28	2.6	28	84	2	101	45	19	9	26	1.80
116937--116966	13	2.3	13	100	0	60	13	23	46	16	1.82
124217--124319	29	3.6	29	91	0	170	43	23	10	22	1.84
124326--124368	18	2.4	18	96	0	77	9	23	48	18	1.76
124320--124349	13	2.3	13	100	0	60	13	23	46	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133966--133999	18	1.9	18	88	5	52	50	0	20	29	1.49
147238--147684	227	2.0	227	93	1	772	45	8	6	39	1.61
147750--147796	20	2.4	19	89	10	76	55	10	17	17	1.69
150262--150327	33	2.0	33	87	0	96	28	1	45	24	1.62
152123--152166	19	2.4	19	92	3	72	31	2	9	56	1.43
152249--154460	198	11.1	199	97	0	4080	37	14	15	32	1.88
152249--154460	397	5.6	398	97	1	4089	37	14	15	32	1.88
155923--155990	21	3.4	18	69	21	55	36	8	35	19	1.83
155923--156020	6	16.3	6	80	0	70	36	7	34	21	1.81
155938--156024	3	29.0	3	77	0	84	35	5	34	24	1.79
155926--156016	42	2.2	42	91	0	146	35	7	35	21	1.83
155923--156020	18	5.4	18	78	0	88	36	7	34	21	1.81
157385--158054	184	3.7	184	97	0	1263	35	14	15	34	1.89
158634--158696	23	2.7	23	90	0	90	36	6	19	38	1.77
158634--158706	23	3.2	23	86	3	85	35	5	19	39	1.75
158284--159123	427	2.0	428	98	1	1623	39	8	12	39	1.74
159061--159125	23	2.8	23	90	0	94	35	7	18	38	1.80
159329--159365	18	2.1	18	89	0	56	32	5	10	51	1.60
159321--159367	24	2.0	24	86	0	67	34	4	14	46	1.64
160770--160808	18	2.2	18	85	0	51	58	2	10	28	1.44
161761--161795	2	18.0	2	94	5	63	48	0	0	51	1.00
162003--162041	17	2.4	17	95	4	71	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162043--162164	25	4.9	25	97	2	237	27	12	11	48	1.75
162043--162164	49	2.5	50	98	1	237	27	12	11	48	1.75
167859--167929	34	2.1	34	100	0	142	46	5	8	39	1.58

Tables:   1

The End!