Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007793.1 Hibiscus syriacus cultivar Beakdansim tig00110082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 216588
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
File 1 of 2
Found at i:2281 original size:33 final size:33
Alignment explanation
Indices: 2239--2304 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2229 AAATAGATGG
*
2239 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
2272 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
2305 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:4139 original size:19 final size:19
Alignment explanation
Indices: 4095--4138 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
4085 AATGTCGAGT
4095 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
4114 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
4133 T-ATTTT
1 TAATTTT
4139 TTTATGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:4569 original size:198 final size:198
Alignment explanation
Indices: 4220--6428 Score: 4054
Period size: 199 Copynumber: 11.1 Consensus size: 198
4210 TTAAGGGTCA
*
4220 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
4285 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
66 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
4350 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
4415 ATG
196 ATG
4418 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
4483 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
66 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
*
4548 AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
4613 ATG
196 ATG
* * *
4616 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTCCCAGAATGAATTAAAAACAAGGTGCACCC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
4681 ATAAAGTGTCGATCCATATATAAAAAAGTGTCGAT-CCAAAATCATCGAACCCAAAAGTATAATG
66 ATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
4745 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
4810 AATG
195 AATG
4814 TGTCGACACTAATATAGTTTGTGTCGAT-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
4878 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
66 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
4943 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
5008 ATG
196 ATG
5011 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
5076 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
65 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
5141 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
5206 AATG
195 AATG
*
5210 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATTAAAAACAAGGTGCATC
*
5275 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
65 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
5340 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
129 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
5405 TAATG
194 TAATG
5410 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
5475 AATAAAGTGTCGATCC-TATATAAAAAGTGTCGATCCC-AAATCATCGAACCCAAAAGTATAATG
65 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
5538 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
5603 AATG
195 AATG
5607 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
5672 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
65 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
5737 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATAAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
5802 AATG
195 AATG
* *
5806 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATAAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATTAAAAACAAGGTGCATC
*
5871 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
65 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
* *
5936 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
6001 AATG
195 AATG
* *
6005 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATAAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATTAAAAACAAGGTGCATC
*
6070 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTATAATG
65 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
* *
6134 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
6199 AATG
195 AATG
*
6203 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAATTAAAAACAAGGTGCATC
* *
6268 CATAAAGTGTCGATCCATATAT-AAACGTGTCGATCCC-AAATCATCGAACCCAAAAGTATAATG
65 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
* * *
6331 TAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCTAAAT
130 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
6396 AATG
195 AATG
*
6400 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
6429 CTAATTTAAA
Statistics
Matches: 1974, Mismatches: 26, Indels: 23
0.98 0.01 0.01
Matches are distributed among these distances:
196 27 0.01
197 477 0.24
198 621 0.31
199 660 0.33
200 182 0.09
201 7 0.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (198 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATTAAAAACAAGGTGCATCA
ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
AATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
ATG
Found at i:5590 original size:596 final size:598
Alignment explanation
Indices: 4220--6428 Score: 4163
Period size: 596 Copynumber: 3.7 Consensus size: 598
4210 TTAAGGGTCA
*
4220 TGTCGATACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
4284 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
4349 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
4414 AATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
4478 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
4543 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
4608 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCCAGAATGAATTAAAAACAA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAA
4672 GGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGAT-CCAAAATCATCGAACCCAAA
456 GGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
4736 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
521 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
4801 AGTCTAAATAATG
586 AGTCTAAATAATG
4814 TGTCGACACTAATATAGTTTGTGTCG--ATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
4877 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
4942 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
5007 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
5072 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
5137 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
5202 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAA
5267 GGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
456 GGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
5332 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
521 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
5397 AGTCTAAATAATG
586 AGTCTAAATAATG
5410 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
5475 AATAAAGTGTCGATCC-TATATAAAAAGTGTCGATCCC-AAATCATCGAACCCAAAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
5538 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
5603 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
5668 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
* *
5733 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATAAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
*
5798 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATAAAAAACAA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAA
5863 GGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
456 GGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
*
5927 AGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
521 AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
*
5992 TGTCTAAATAATG
586 AGTCTAAATAATG
* * *
6005 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATAAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
*
6070 CATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC-AAAGTATAATG
66 AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
* *
6134 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAAT
131 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
*
6199 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
196 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
* * *
6264 CACCCATAAAGTGTCGATCCATATAT-AAACGTGTCGATCCC-AAATCATCGAACCCAAAAGTAT
261 CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
* *
6327 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCT
326 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
*
6392 AAATAATGTGTCGACACTAATATATTTTGTGTCGATA
391 AAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
6429 CTAATTTAAA
Statistics
Matches: 1586, Mismatches: 21, Indels: 16
0.98 0.01 0.01
Matches are distributed among these distances:
592 1 0.00
593 198 0.12
594 342 0.22
595 272 0.17
596 685 0.43
597 35 0.02
598 53 0.03
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (598 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTGCATC
AATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTAAAAACAAGGTG
CATCAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
AATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
AAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAA
GGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAA
AGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATA
AGTCTAAATAATG
Found at i:7912 original size:18 final size:18
Alignment explanation
Indices: 7889--7956 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
7879 ATCGGTCGCA
7889 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
7907 GAAGATGACGATGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
7928 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
7949 GAAGATGA
1 GAAGATGA
7957 TGACGATGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:7913 original size:6 final size:6
Alignment explanation
Indices: 7889--7985 Score: 61
Period size: 6 Copynumber: 16.3 Consensus size: 6
7879 ATCGGTCGCA
* * * * * *
7889 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
7937 GAAGCT GGCGAT GAAGAT GATGAC GATG-T GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
7984 GA
1 GA
7986 TGATCCAAAC
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
5 4 0.06
6 68 0.94
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.22
Consensus pattern (6 bp):
GAAGAT
Found at i:7924 original size:3 final size:3
Alignment explanation
Indices: 7904--7989 Score: 75
Period size: 3 Copynumber: 29.0 Consensus size: 3
7894 TGAAGCTGAC
* * * * * ** *
7904 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
7952 GAT GAT GAC GAT G-T GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
7990 CCAAACAAGT
Statistics
Matches: 63, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
2 2 0.03
3 61 0.97
ACGTcount: A:0.35, C:0.06, G:0.35, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:7986 original size:12 final size:12
Alignment explanation
Indices: 7892--7989 Score: 72
Period size: 12 Copynumber: 8.2 Consensus size: 12
7882 GGTCGCAGAA
* *
7892 GATGAAGCTGAC
1 GATGAAGATGAT
*
7904 GATGAAGATGAC
1 GATGAAGATGAT
*
7916 GATGATGATGAT
1 GATGAAGATGAT
* *
7928 GATGACGATGAA
1 GATGAAGATGAT
* ** *
7940 GCTGGCGATGAA
1 GATGAAGATGAT
* *
7952 GATGATGACGAT
1 GATGAAGATGAT
*
7964 G-TGATGATGAT
1 GATGAAGATGAT
7975 GATGAAGATGAT
1 GATGAAGATGAT
7987 GAT
1 GAT
7990 CCAAACAAGT
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
11 10 0.14
12 61 0.86
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (12 bp):
GATGAAGATGAT
Found at i:9857 original size:184 final size:184
Alignment explanation
Indices: 9350--10019 Score: 1272
Period size: 184 Copynumber: 3.7 Consensus size: 184
9340 CTTTCAACAT
* *
9350 ATTATAAT-AAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
9414 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
9479 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
9533 ATTATAATGTAATAGATAA-TTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
9597 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
9662 AATGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
9716 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
9781 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
9846 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
9900 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
*
9965 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
10020 CCATTTAAAA
Statistics
Matches: 478, Mismatches: 7, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
183 189 0.40
184 289 0.60
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:10633 original size:23 final size:23
Alignment explanation
Indices: 10602--10664 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
10592 ATAGGTAAAC
*
10602 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
10625 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
10648 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
10665 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:10672 original size:23 final size:23
Alignment explanation
Indices: 10602--10674 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
10592 ATAGGTAAAC
* * **
10602 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
10625 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
10648 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
10671 ATAT
1 ATAT
10675 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:11095 original size:23 final size:23
Alignment explanation
Indices: 11032--11096 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
11022 ATAGGTAAAC
* *
11032 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCCCTT
**
11055 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCCCTT
11078 ATATAATGTAATAGGTATC
1 ATATAATGTAATAGGTATC
11097 TATCTCGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCCCTT
Found at i:11321 original size:18 final size:18
Alignment explanation
Indices: 11300--11336 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
11290 GTAATTGGAG
11300 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
11318 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
11336 T
1 T
11337 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:11344 original size:24 final size:24
Alignment explanation
Indices: 11292--11338 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
11282 TTTCATATGT
* *
11292 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
11316 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
11339 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:12767 original size:18 final size:18
Alignment explanation
Indices: 12744--12782 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
12734 GTTGAACTAG
* *
12744 TAAGATGAAACATTTAAA
1 TAAGATAAAAAATTTAAA
*
12762 TAAGATAAAAAATTTGAA
1 TAAGATAAAAAATTTAAA
12780 TAA
1 TAA
12783 TGACACTCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (18 bp):
TAAGATAAAAAATTTAAA
Found at i:13809 original size:2 final size:2
Alignment explanation
Indices: 13798--13832 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
13788 ATCATGGATA
13798 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13833 GGTGTTCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:14069 original size:17 final size:17
Alignment explanation
Indices: 14042--14080 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
14032 AATTTACAAT
14042 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
14058 TAATTATAAATAATATC
1 TAATTATAAATAATATC
14075 TAATTA
1 TAATTA
14081 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:14116 original size:25 final size:25
Alignment explanation
Indices: 14082--14204 Score: 246
Period size: 25 Copynumber: 4.9 Consensus size: 25
14072 ATCTAATTAA
14082 TTTGATTCAAACATTTGCATTTAGT
1 TTTGATTCAAACATTTGCATTTAGT
14107 TTTGATTCAAACATTTGCATTTAGT
1 TTTGATTCAAACATTTGCATTTAGT
14132 TTTGATTCAAACATTTGCATTTAGT
1 TTTGATTCAAACATTTGCATTTAGT
14157 TTTGATTCAAACATTTGCATTTAGT
1 TTTGATTCAAACATTTGCATTTAGT
14182 TTTGATTCAAACATTTGCATTTA
1 TTTGATTCAAACATTTGCATTTA
14205 TCCACTACCC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 98 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.48
Consensus pattern (25 bp):
TTTGATTCAAACATTTGCATTTAGT
Found at i:15302 original size:2 final size:2
Alignment explanation
Indices: 15295--15322 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15285 AACACCCCTT
15295 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15323 GTTGTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20013 original size:34 final size:34
Alignment explanation
Indices: 19975--20045 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
19965 TATATAAGTA
19975 AAAATGGAATTTATTTGACATCATTTTATAAAAT
1 AAAATGGAATTTATTTGACATCATTTTATAAAAT
20009 AAAATGGAATTTATTTGACATCATTTTATAAAAT
1 AAAATGGAATTTATTTGACATCATTTTATAAAAT
20043 AAA
1 AAA
20046 CTTAGTGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (34 bp):
AAAATGGAATTTATTTGACATCATTTTATAAAAT
Found at i:24896 original size:26 final size:26
Alignment explanation
Indices: 24867--24918 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24857 TCATACTGAA
*
24867 GCTTTGTACTACCATATTAGAATTAG
1 GCTTTATACTACCATATTAGAATTAG
* *
24893 GCTTTATAGTAGCATATTAGAATTAG
1 GCTTTATACTACCATATTAGAATTAG
24919 TCATCTAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (26 bp):
GCTTTATACTACCATATTAGAATTAG
Found at i:26153 original size:118 final size:118
Alignment explanation
Indices: 25928--26242 Score: 365
Period size: 118 Copynumber: 2.7 Consensus size: 118
25918 TATATTAAAA
* *
25928 ATAT-TTTAAAATATTTAAATTCTTAGCTATAAATATATATTATTATTATTATTATTTCTTAATT
1 ATATATTTAAAATATTTAAATTCTTAACTATAAA-A-ATA-TA-TATT-TTATTTTTTCTTAATT
* * * * *
25992 TATAAAATTTAT-TTTTTTGGTTTAAATTAGGCCAATTTTATTATTTGAGGTAAGAAT
61 TATAGAATATATATTTTTTGGTTTAAAGTAGGCCAAGTTTATTATTTAAGGTAAGAAT
* *
26049 ATATATTTAAAATATTTAAATTATTAACTATAAAAATATATATTTTATTTTTTCTTAATTTATCG
1 ATATATTTAAAATATTTAAATTCTTAACTATAAAAATATATATTTTATTTTTTCTTAATTTATAG
* *
26114 AATATATATTTTTTGGTTTAAAGTAGGCCAAGTTTATTATTTAAGTTAATAAT
66 AATATATATTTTTTGGTTTAAAGTAGGCCAAGTTTATTATTTAAGGTAAGAAT
* * *
26167 ATATATTTAAAATATATATTCAAATTCCTAACTAT--AAA-ATAT-TTTT-TTTATTCTTATTTT
1 ATATATTT-AAA-ATAT-TT-AAATTCTTAACTATAAAAATATATATTTTATTTTTTCTTAATTT
*
26227 ATTGAATATATATTTT
62 ATAGAATATATATTTT
26243 AAAATATTAT
Statistics
Matches: 172, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
117 51 0.30
118 56 0.33
119 9 0.05
120 10 0.06
121 7 0.04
122 39 0.23
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.52
Consensus pattern (118 bp):
ATATATTTAAAATATTTAAATTCTTAACTATAAAAATATATATTTTATTTTTTCTTAATTTATAG
AATATATATTTTTTGGTTTAAAGTAGGCCAAGTTTATTATTTAAGGTAAGAAT
Found at i:26305 original size:26 final size:25
Alignment explanation
Indices: 26263--26311 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
26253 AAAAAAATTT
26263 AAATATTTAAGTTAAG-ATTTAAAA
1 AAATATTTAAGTTAAGAATTTAAAA
26287 AAATATTTTATAGTTAAGAATTTAA
1 AAATA-TTTA-AGTTAAGAATTTAA
26312 TATTATACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.23
25 4 0.18
26 7 0.32
27 6 0.27
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (25 bp):
AAATATTTAAGTTAAGAATTTAAAA
Found at i:27167 original size:59 final size:58
Alignment explanation
Indices: 27090--27224 Score: 139
Period size: 59 Copynumber: 2.3 Consensus size: 58
27080 GTCCATACAT
* * *
27090 TTTAAAACATTTCATATCAGTCCT-AAACTATAACCCTTATACTAAATTAG-TCTCTAAAC
1 TTTAAAATATTT-ATATCAATCCTCAAACTATAA-CCTCATACTAAATTAGTTCT-TAAAC
* * * * *
27149 TTTAAAATATTCTATATCAATCCTCAAATTATGACCTCATTCTAAATTAGTTCTTCAAT
1 TTTAAAATATT-TATATCAATCCTCAAACTATAACCTCATACTAAATTAGTTCTTAAAC
27208 TTTAAAATATTTTATAT
1 TTTAAAATA-TTTATAT
27225 ATCAATTCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
59 51 0.80
60 13 0.20
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (58 bp):
TTTAAAATATTTATATCAATCCTCAAACTATAACCTCATACTAAATTAGTTCTTAAAC
Found at i:27751 original size:3 final size:3
Alignment explanation
Indices: 27743--27769 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
27733 ACCCACTTAA
27743 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
27770 TTAAACCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:32312 original size:2 final size:2
Alignment explanation
Indices: 32305--32332 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32295 ATTATTTTTC
32305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32333 GAATGTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32690 original size:28 final size:28
Alignment explanation
Indices: 32658--32721 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
32648 AATATGAAAT
* *
32658 TATAAAAA-TCAAGGGCCTTAATTATAAA
1 TATAAAAATTCAA-AGCCCTAATTATAAA
*
32686 TATAAAAATTGAAAGCCCTAATTATAAA
1 TATAAAAATTCAAAGCCCTAATTATAAA
*
32714 TACAAAAA
1 TATAAAAA
32722 AATTGAAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 28 0.90
29 3 0.10
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.27
Consensus pattern (28 bp):
TATAAAAATTCAAAGCCCTAATTATAAA
Found at i:34271 original size:15 final size:16
Alignment explanation
Indices: 34244--34283 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
34234 AACACTTAAA
34244 ATTTAATTATTTTTTT
1 ATTTAATTATTTTTTT
34260 ATTTAA-TATTTTTTT
1 ATTTAATTATTTTTTT
*
34275 -TTCAATTAT
1 ATTTAATTAT
34284 GTAATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 4 0.18
15 12 0.55
16 6 0.27
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTAATTATTTTTTT
Found at i:37889 original size:23 final size:24
Alignment explanation
Indices: 37847--37893 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
37837 TTTATATAAT
*
37847 TTAATTATTATATTTATATTTTTA
1 TTAATAATTATATTTATATTTTTA
*
37871 TTAATAATT-TATTTCTATTTTTA
1 TTAATAATTATATTTATATTTTTA
37894 AAATTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (24 bp):
TTAATAATTATATTTATATTTTTA
Found at i:38098 original size:7 final size:7
Alignment explanation
Indices: 38086--38184 Score: 198
Period size: 7 Copynumber: 14.1 Consensus size: 7
38076 AACTACCAAT
38086 TTCTTCA
1 TTCTTCA
38093 TTCTTCA
1 TTCTTCA
38100 TTCTTCA
1 TTCTTCA
38107 TTCTTCA
1 TTCTTCA
38114 TTCTTCA
1 TTCTTCA
38121 TTCTTCA
1 TTCTTCA
38128 TTCTTCA
1 TTCTTCA
38135 TTCTTCA
1 TTCTTCA
38142 TTCTTCA
1 TTCTTCA
38149 TTCTTCA
1 TTCTTCA
38156 TTCTTCA
1 TTCTTCA
38163 TTCTTCA
1 TTCTTCA
38170 TTCTTCA
1 TTCTTCA
38177 TTCTTCA
1 TTCTTCA
38184 T
1 T
38185 ATTCCGTACA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 92 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (7 bp):
TTCTTCA
Found at i:41873 original size:843 final size:844
Alignment explanation
Indices: 40218--41895 Score: 3108
Period size: 843 Copynumber: 2.0 Consensus size: 844
40208 CAACCATTAT
*
40218 CATTTGTTAATCATGCGTATTCTTTTTTTGATTCAAGAAGAGTCGCAACGTCGTCATCTTTCTGG
1 CATTTGTTAATCATGCATATTCTTTTTTTGATTCAAGAAGAGTCGCAACGTCGTCATCTTTCTGG
*
40283 CGTTTCTCCATTTGTGATTCATCTGCGATGTTTTTCGGTTCTTCAGTTGTTTCTTCTGTTAATCA
66 CGTTTCTCCATTTGTGATTCATCTGCGATGTTTTTCGGTTCTTCAGCTGTTTCTTCTGTTAATCA
* * *
40348 GACTTCTTTGGGATCTCGTAGGCATTTTTTCAGGCAATTACGATCATTGTGGGATCAAAGGTCCC
131 GACTTCTTCGGGATCTCGTAGGCATTTTTTAAGGCAATTACAATCATTGTGGGATCAAAGGTCCC
*
40413 AAATGTGACCAATGTTACCGTTTGATAATTTTTCCTTCTGATTTTAAGTTCGACCATAAGAAGAA
196 AAATGTGACCAATGTTACCGTTTGATAATTTTTCCTACTGATTTTAAGTTCGACCATAAGAAGAA
40478 TGCTCCTACTGCCTTGAATGTTAATTTGGAGGGTTCACAATCTAATTCTACTTCTGGTTCTTCAG
261 TGCTCCTACTGCCTTGAATGTTAATTTGGAGGGTTCACAATCTAATTCTACTTCTGGTTCTTCAG
* *
40543 CTCCTCCTGCTCTCGTGTCTGTAGCACCTTTGGTTTCAGTCTTCACTCAAAATCAATATCGTCAT
326 CTCCTCATGCTCTCGTGTCTGTAGCACCTTTGGTTTCAGTCTTCACTCAAAATCAATATCGTCAG
40608 ATTTTGGAGCTTCTTAACAAGCCATCTGTTGTCAACATGGCTGGTGTTGATGGTAAGCACTCTGC
391 ATTTTGGAGCTTCTTAACAAGCCATCTGTTGTCAACATGGCTGGTGTTGATGGTAAGCACTCTGC
40673 AACTGTTAGGTCTCTTACCTAGATTTTAGATTCTAGAGCAACTAATCATGTCTTATCTGATCCTC
456 AACTGTTAGGTCTCTTACCTAGATTTTAGATTCTAGAGCAACTAATCATGTCTTATCTGATCCTC
40738 AATTCTTGAATAATCCTATTGATTGTACTTCTATTCAACGTCTTGTTCATCTTCCCAATGGTAAA
521 AATTCTTGAATAATCCTATTGATTGTACTTCTATTCAACGTCTTGTTCATCTTCCCAATGGTAAA
*
40803 ACATCTTTTATTACACATATGAGTTCTATTTTCTTAGATTCTACTCATGAGTTGCAGCATGTTTT
586 ACATCTTTTATTACACATATGAGTTCTATTTTCTTAGATTCTACTCATGAGTTGCAACATGTTTT
40868 ATATGTACCTCATTTCACTCATAATTTATTGTCAGTGTTAAAATTATCCAAATATTTTCATTGTT
651 ATATGTACCTCATTTCACTCATAATTTATTGTCAGTGTTAAAATTATCCAAATATTTTCATTGTT
* * * *
40933 CAGTTGATTCTACCTCAATTTTTGCCTTTTACAGGATCTCTCTAATGACAAGATTTAGGGGATTG
716 CAATTGATTCTACCCCAATTTTTGCCTTTTACAGGACCTCTCCAATGACAAGATTTAGGGGATTG
*
40998 GTAGGGTTGTTGGTGGTATGTATTTGTTTGAGTTCTTTGTTTCATCATCTATTTTCATTGGTCA
781 GTAGGGCTGTTGGTGGTATGTATTTGTTTGAGTTCTTTGTTTCATCATCTATTTTCATTGGTCA
*
41062 CATTTGTTAATCATGCATATTCTTTTTTTTTATTCAAGAAGAGTCGCAACGTCGTCATCTTTCTG
1 CATTTGTTAATCATGCATATTC-TTTTTTTGATTCAAGAAGAGTCGCAACGTCGTCATCTTTCTG
*
41127 GCGTTTCTCCATTTGTGATTCATCTGCGATGTTTTTCGGTTCTTCGGCTGTTTCTTCTGTTAATC
65 GCGTTTCTCCATTTGTGATTCATCTGCGATGTTTTTCGGTTCTTCAGCTGTTTCTTCTGTTAATC
* *
41192 AGATTTCTTCGGGATCTCGTAGGCGTTTTTTAAGGCAATTACAATCATTGTGGGATCAAAGGTCC
130 AGACTTCTTCGGGATCTCGTAGGCATTTTTTAAGGCAATTACAATCATTGTGGGATCAAAGGTCC
** *
41257 CAAATGTGACCAATGTTACCGTTTGATCGTTTTTCCTACTGATTTTAAGTTCGGCCATAA-AA-A
195 CAAATGTGACCAATGTTACCGTTTGATAATTTTTCCTACTGATTTTAAGTTCGACCATAAGAAGA
41320 ATGCTCCTACTGCCTTGAATGTTAATTTGGAGGGTTCACAATCTAATTCTACTTCTGGTTCTTCA
260 ATGCTCCTACTGCCTTGAATGTTAATTTGGAGGGTTCACAATCTAATTCTACTTCTGGTTCTTCA
41385 GCTCCTCATGCTCTCGTGTCTGTAGCACCTTTGGTTTCAGTCTTCACTCAAAATCAATATCGTCA
325 GCTCCTCATGCTCTCGTGTCTGTAGCACCTTTGGTTTCAGTCTTCACTCAAAATCAATATCGTCA
41450 GATTTTGGAGCTTCTTAACAAGCCATCTGTTGTCAACATGGCTGGTGTTGATGGTAAGCACTCTG
390 GATTTTGGAGCTTCTTAACAAGCCATCTGTTGTCAACATGGCTGGTGTTGATGGTAAGCACTCTG
41515 CAACTGTTAGGTCTCTTACCTAGATTTTAGATTCTAGAGCAACTAATCATGTCTTATCTGATCCT
455 CAACTGTTAGGTCTCTTACCTAGATTTTAGATTCTAGAGCAACTAATCATGTCTTATCTGATCCT
41580 CAATTCTTGAATAATCCTATTGATTGTACTTCTATTCAACGTCTTGTTCATCTTCCCAATGGTAA
520 CAATTCTTGAATAATCCTATTGATTGTACTTCTATTCAACGTCTTGTTCATCTTCCCAATGGTAA
41645 AACATCTTTTATTACACATATGAGTTCTATTTTCTTAGATTCTACTCATGAGTTGCAACATGTTT
585 AACATCTTTTATTACACATATGAGTTCTATTTTCTTAGATTCTACTCATGAGTTGCAACATGTTT
41710 TATATGTACCTCATTTCACTCATAATTTATTGTCAGTGTTAAAATTATCCAAATATTTTCATTGT
650 TATATGTACCTCATTTCACTCATAATTTATTGTCAGTGTTAAAATTATCCAAATATTTTCATTGT
* *
41775 TCAATTGATTCTACCCCAATTTTTTCCTTTTACAGGACCTCTCCAATGATAAGATTTAGGGGATT
715 TCAATTGATTCTACCCCAATTTTTGCCTTTTACAGGACCTCTCCAATGACAAGATTTAGGGGATT
* *
41840 TGTAGGGCTGTTGGTGGTATGTATTTTTTTGAGTTCTTTGTTTCATCATCTATTTT
780 GGTAGGGCTGTTGGTGGTATGTATTTGTTTGAGTTCTTTGTTTCATCATCTATTTT
41896 GAATTCCTGT
Statistics
Matches: 808, Mismatches: 25, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
843 565 0.70
844 23 0.03
845 220 0.27
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (844 bp):
CATTTGTTAATCATGCATATTCTTTTTTTGATTCAAGAAGAGTCGCAACGTCGTCATCTTTCTGG
CGTTTCTCCATTTGTGATTCATCTGCGATGTTTTTCGGTTCTTCAGCTGTTTCTTCTGTTAATCA
GACTTCTTCGGGATCTCGTAGGCATTTTTTAAGGCAATTACAATCATTGTGGGATCAAAGGTCCC
AAATGTGACCAATGTTACCGTTTGATAATTTTTCCTACTGATTTTAAGTTCGACCATAAGAAGAA
TGCTCCTACTGCCTTGAATGTTAATTTGGAGGGTTCACAATCTAATTCTACTTCTGGTTCTTCAG
CTCCTCATGCTCTCGTGTCTGTAGCACCTTTGGTTTCAGTCTTCACTCAAAATCAATATCGTCAG
ATTTTGGAGCTTCTTAACAAGCCATCTGTTGTCAACATGGCTGGTGTTGATGGTAAGCACTCTGC
AACTGTTAGGTCTCTTACCTAGATTTTAGATTCTAGAGCAACTAATCATGTCTTATCTGATCCTC
AATTCTTGAATAATCCTATTGATTGTACTTCTATTCAACGTCTTGTTCATCTTCCCAATGGTAAA
ACATCTTTTATTACACATATGAGTTCTATTTTCTTAGATTCTACTCATGAGTTGCAACATGTTTT
ATATGTACCTCATTTCACTCATAATTTATTGTCAGTGTTAAAATTATCCAAATATTTTCATTGTT
CAATTGATTCTACCCCAATTTTTGCCTTTTACAGGACCTCTCCAATGACAAGATTTAGGGGATTG
GTAGGGCTGTTGGTGGTATGTATTTGTTTGAGTTCTTTGTTTCATCATCTATTTTCATTGGTCA
Found at i:45816 original size:12 final size:12
Alignment explanation
Indices: 45783--45816 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
45773 CAAATATTTC
*
45783 ACTGTTCATAGT
1 ACTGTTCATGGT
45795 ACTGTTCATGGT
1 ACTGTTCATGGT
45807 ACTGTTCATG
1 ACTGTTCATG
45817 CGTATATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (12 bp):
ACTGTTCATGGT
Found at i:49052 original size:21 final size:21
Alignment explanation
Indices: 49028--49074 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
49018 CTTGATACTC
*
49028 GCAATAGCACCTGTTATTGTG
1 GCAATAGCACCTGTTAATGTG
49049 GCAATAGCACCTGTTAATGTG
1 GCAATAGCACCTGTTAATGTG
49070 GCAAT
1 GCAAT
49075 CACAATAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (21 bp):
GCAATAGCACCTGTTAATGTG
Found at i:51387 original size:2 final size:2
Alignment explanation
Indices: 51380--51415 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
51370 GCCAAAAATA
51380 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51416 GTGAATGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62153 original size:38 final size:38
Alignment explanation
Indices: 62100--62174 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
62090 TGGGAGTTTT
62100 ATATTGAACTCGATTCTCAAGTTACCTCTCTTGGAAGG
1 ATATTGAACTCGATTCTCAAGTTACCTCTCTTGGAAGG
* *
62138 ATATTGAACTTGATTCTCAAGTTGCCTCTCTTGGAAG
1 ATATTGAACTCGATTCTCAAGTTACCTCTCTTGGAAG
62175 AATTTTTGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (38 bp):
ATATTGAACTCGATTCTCAAGTTACCTCTCTTGGAAGG
Found at i:65046 original size:15 final size:16
Alignment explanation
Indices: 65028--65058 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
65018 AAAAGGGTTT
65028 TAAAAAATAA-TAAAA
1 TAAAAAATAATTAAAA
65043 TAAAAAATAATTAAAA
1 TAAAAAATAATTAAAA
65059 GGGATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAAAAATAATTAAAA
Found at i:65087 original size:5 final size:5
Alignment explanation
Indices: 65064--65097 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
65054 TAAAAGGGAT
65064 AATAA AATAA TAATGAA AATAA AATAA AATAA AA
1 AATAA AATAA -AAT-AA AATAA AATAA AATAA AA
65098 AGGAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 19 0.70
6 6 0.22
7 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:65107 original size:36 final size:39
Alignment explanation
Indices: 65028--65119 Score: 99
Period size: 36 Copynumber: 2.5 Consensus size: 39
65018 AAAAGGGTTT
*
65028 TAAAA-AATAAT-AAAATAAAAAATAATTAAAAGGGATAA
1 TAAAATAATAATGAAAATAAAAAATAATTAAAAAGGA-AA
65066 TAAAATAATAATGAAAATAAAATAA-AA-TAAAAAGG-AA
1 TAAAATAATAATGAAAATAAAA-AATAATTAAAAAGGAAA
65103 -AAAATGAA-AATGAAAAT
1 TAAAAT-AATAATGAAAAT
65120 TCAAATTAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
36 14 0.29
37 4 0.08
38 5 0.10
39 13 0.27
40 11 0.22
41 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.20
Consensus pattern (39 bp):
TAAAATAATAATGAAAATAAAAAATAATTAAAAAGGAAA
Found at i:73322 original size:21 final size:21
Alignment explanation
Indices: 73296--73337 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
73286 CCACGATAGG
73296 GGGTATCGGTACCCCTTCATA
1 GGGTATCGGTACCCCTTCATA
*
73317 GGGTATCGGTACTCCTTCATA
1 GGGTATCGGTACCCCTTCATA
73338 AAATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (21 bp):
GGGTATCGGTACCCCTTCATA
Found at i:73413 original size:32 final size:33
Alignment explanation
Indices: 73371--73432 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
73361 GCAGCCAGGG
* *
73371 GGTATAGATACCCTGGGG-GTATGGATACCCAT
1 GGTATAGATACCATGGGGAGTATAGATACCCAT
*
73403 GGTATCGATACCATGGGGAGTATAGATACC
1 GGTATAGATACCATGGGGAGTATAGATACC
73433 ATCCGAGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 16 0.62
33 10 0.38
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (33 bp):
GGTATAGATACCATGGGGAGTATAGATACCCAT
Found at i:73430 original size:18 final size:17
Alignment explanation
Indices: 73368--73434 Score: 68
Period size: 18 Copynumber: 4.0 Consensus size: 17
73358 GTTGCAGCCA
*
73368 GGGGGTATAGATACCCT
1 GGGGGTATAGATACCAT
*
73385 GGGGGTATGGATACCCAT
1 GGGGGTATAGATA-CCAT
*
73403 ---GGTATCGATACCAT
1 GGGGGTATAGATACCAT
73417 GGGGAGTATAGATACCAT
1 GGGG-GTATAGATACCAT
73435 CCGAGCAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
14 4 0.10
15 9 0.22
17 13 0.32
18 15 0.37
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (17 bp):
GGGGGTATAGATACCAT
Found at i:73585 original size:30 final size:29
Alignment explanation
Indices: 73551--73619 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 29
73541 ATTATTTTTG
*
73551 AAACATTTTAAAACTTCAATTTAAGTCCAA
1 AAACATTTTAAAA-TTCAATTCAAGTCCAA
*
73581 AAACATTTTTTAAATTCAATTCAAGTCCAA
1 AAACA-TTTTAAAATTCAATTCAAGTCCAA
73611 AAACATTTT
1 AAACATTTT
73620 GCCTTAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 4 0.11
30 25 0.69
31 7 0.19
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.36
Consensus pattern (29 bp):
AAACATTTTAAAATTCAATTCAAGTCCAA
Found at i:73806 original size:24 final size:24
Alignment explanation
Indices: 73774--73822 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
73764 ATATATGAAA
*
73774 ATGTTAAGCTCCCCCTTTTTCATT
1 ATGTTAAGCTCCCCCTGTTTCATT
73798 ATGTTAAGCTCCCCCTGTTTCATT
1 ATGTTAAGCTCCCCCTGTTTCATT
73822 A
1 A
73823 AGAAATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.29, G:0.10, T:0.43
Consensus pattern (24 bp):
ATGTTAAGCTCCCCCTGTTTCATT
Found at i:74953 original size:19 final size:18
Alignment explanation
Indices: 74917--74969 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
74907 CTCTAAATTA
74917 TTTTTCAAAATTTC-ATTTT
1 TTTTTCAAAA--TCAATTTT
74936 GTTTTTCAAAATCAATTTT
1 -TTTTTCAAAATCAATTTT
*
74955 TGCTTTCAAAATCAA
1 T-TTTTCAAAATCAA
74970 ATTATCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 17 0.57
20 10 0.33
ACGTcount: A:0.32, C:0.13, G:0.04, T:0.51
Consensus pattern (18 bp):
TTTTTCAAAATCAATTTT
Found at i:75001 original size:19 final size:20
Alignment explanation
Indices: 74977--75017 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
74967 CAAATTATCT
74977 TTAATTTTG-AGT-TTTGAAA
1 TTAATTTTGTA-TATTTGAAA
74996 TTAATTTTGTATATTTGAAA
1 TTAATTTTGTATATTTGAAA
75016 TT
1 TT
75018 CATGGTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (20 bp):
TTAATTTTGTATATTTGAAA
Found at i:76932 original size:16 final size:17
Alignment explanation
Indices: 76878--76941 Score: 92
Period size: 17 Copynumber: 3.7 Consensus size: 17
76868 TTGCAGCCAA
* *
76878 GGGGTATAGATACCCTAG
1 GGGGTATCGATACCAT-G
76896 GGGGTATCGATACCATG
1 GGGGTATCGATACCATG
76913 GGGGTATCGATACCATG
1 GGGGTATCGATACCATG
*
76930 GGGGTATAGATA
1 GGGGTATCGATA
76942 TCATTCGAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
17 29 0.67
18 14 0.33
ACGTcount: A:0.27, C:0.14, G:0.36, T:0.23
Consensus pattern (17 bp):
GGGGTATCGATACCATG
Found at i:77220 original size:14 final size:13
Alignment explanation
Indices: 77201--77265 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 13
77191 AAAATAAAAT
77201 TAAATAAATAAGTAA
1 TAAAT-AATAA-TAA
*
77216 TAATATAAAAATAA
1 TAA-ATAATAATAA
*
77230 TAAATAATCATAAA
1 TAAATAATAAT-AA
77244 TAAATATATAA-AA
1 TAAATA-ATAATAA
*
77257 TATATAATA
1 TAAATAATA
77266 TTATTTTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
12 3 0.07
13 13 0.31
14 14 0.33
15 10 0.24
16 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (13 bp):
TAAATAATAATAA
Found at i:77231 original size:21 final size:21
Alignment explanation
Indices: 77187--77265 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 21
77177 ACCTGTAAAA
77187 AAATAA-AATAAAATTAAATAAAT
1 AAATAATAAT-AAA-TAAAT-AAT
*
77210 AAGTAATAATATAA-AAATAAT
1 AAATAATAATA-AATAAATAAT
*
77231 AAATAATCATAAATAAATATAT
1 AAATAATAATAAATAAATA-AT
77253 AAAATATATAATA
1 -AAATA-ATAATA
77266 TTATTTTTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.04
21 17 0.37
22 6 0.13
23 11 0.24
24 10 0.22
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (21 bp):
AAATAATAATAAATAAATAAT
Found at i:77249 original size:18 final size:17
Alignment explanation
Indices: 77204--77254 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
77194 ATAAAATTAA
*
77204 ATAAATAAGT-AATAAT
1 ATAAATAAATAAATAAT
*
77220 ATAAAAATAATAAATAAT
1 ATAAATA-AATAAATAAT
*
77238 CATAAATAAATATATAA
1 -ATAAATAAATAAATAA
77255 AATATATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.21
17 2 0.07
18 14 0.50
19 6 0.21
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
ATAAATAAATAAATAAT
Found at i:77254 original size:25 final size:25
Alignment explanation
Indices: 77188--77236 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
77178 CCTGTAAAAA
* *
77188 AATAAAATAAAATTAAATAAATAAGT
1 AATAATATAAAAAT-AATAAATAAGT
77214 AATAATATAAAAATAATAAATAA
1 AATAATATAAAAATAATAAATAA
77237 TCATAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (25 bp):
AATAATATAAAAATAATAAATAAGT
Found at i:77346 original size:26 final size:23
Alignment explanation
Indices: 77253--77375 Score: 93
Period size: 26 Copynumber: 5.4 Consensus size: 23
77243 ATAAATATAT
77253 AAAATATATA-ATATTATTTTTCA
1 AAAATATATATATA-TATTTTTCA
*
77276 GAAA-ATA-A-A-ATA-TTTT-A
1 AAAATATATATATATATTTTTCA
77293 AAAAT-TATATATCATATGTTTTCA
1 AAAATATATATAT-ATAT-TTTTCA
*
77317 AAAACTATATTATATATACTTTTTTA
1 AAAA-TATA-TATATATA-TTTTTCA
77343 AAAAGTATATATTATATATTTTTCA
1 AAAA-TATATA-TATATATTTTTCA
77368 AAAA-ATAT
1 AAAATATAT
77376 TTTCAAAACT
Statistics
Matches: 82, Mismatches: 5, Indels: 26
0.73 0.04 0.23
Matches are distributed among these distances:
17 6 0.07
18 5 0.06
19 3 0.04
20 1 0.01
21 5 0.06
22 3 0.04
23 11 0.13
24 5 0.06
25 13 0.16
26 24 0.29
27 6 0.07
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (23 bp):
AAAATATATATATATATTTTTCA
Found at i:77416 original size:36 final size:36
Alignment explanation
Indices: 77338--77565 Score: 208
Period size: 36 Copynumber: 6.0 Consensus size: 36
77328 ATATATACTT
* * *
77338 TTTTAAAAAGTATATATTATATAT-TTTTCAAAAAATA
1 TTTTCAAAACTATATATTATATATATTTT--TAAAATA
*
77375 TTTTCAAAACTATATATTATATATATTTTTAAAATG
1 TTTTCAAAACTATATATTATATATATTTTTAAAATA
* * *
77411 TTTTCAAAACTATATATTATATACATTTTCAAAATG
1 TTTTCAAAACTATATATTATATATATTTTTAAAATA
* *
77447 TTTTCAAAACTATATATTAGATATATTTTTCAAAAAACA
1 TTTTCAAAACTATATATTATATATATTTTT---AAAATA
*
77486 TTTGC-AAACTATATATATATATATATATATATATTCAAAAATCA
1 TTTTCAAAAC--TATATAT-TATATATAT-T-T-TT--AAAAT-A
* *
77530 TTTTCAAAGCTATATAATATATATATTTTTAAAATA
1 TTTTCAAAACTATATATTATATATATTTTTAAAATA
77566 AATTTAAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
36 67 0.42
37 27 0.17
38 8 0.05
39 10 0.06
40 8 0.05
41 9 0.06
42 10 0.06
43 12 0.07
44 7 0.04
45 3 0.02
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (36 bp):
TTTTCAAAACTATATATTATATATATTTTTAAAATA
Found at i:77500 original size:2 final size:2
Alignment explanation
Indices: 77495--77519 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77485 ATTTGCAAAC
77495 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
77520 TCAAAAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77523 original size:44 final size:44
Alignment explanation
Indices: 77457--77555 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
77447 TTTTCAAAAC
* *
77457 TATATAT-TAGATATATTTTTCAAAAAACATTTGCAAA-CTATA
1 TATATATATATATATATTATTCAAAAAACATTTGCAAAGCTATA
* *
77499 TATATATATATATATATATATTCAAAAATCATTTTCAAAGCTATA
1 TATATATATATATATAT-TATTCAAAAAACATTTGCAAAGCTATA
77544 TA-ATATATATAT
1 TATATATATATAT
77556 TTTTAAAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
42 7 0.14
43 8 0.16
44 28 0.56
45 7 0.14
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (44 bp):
TATATATATATATATATTATTCAAAAAACATTTGCAAAGCTATA
Found at i:80403 original size:72 final size:72
Alignment explanation
Indices: 80277--80412 Score: 227
Period size: 72 Copynumber: 1.9 Consensus size: 72
80267 TCTCAACATG
**
80277 CCTCTTTTGCTAAGTGGTCGGCCATCCCATTTTGCGTTCTCAGAATATAAAAGTACTGCAGTGTC
1 CCTCTTTTGCTAAGTGGTCGGCCATCCCATTAGGCGTTCTCAGAATATAAAAGTACTGCAGTGTC
80342 GAGCATA
66 GAGCATA
* * *
80349 CCTCTTTTGCTAAGTGGTCGGCCATCCCGTTAGGCGTTCTCAGATTATAGAAGTACTGCAGTGT
1 CCTCTTTTGCTAAGTGGTCGGCCATCCCATTAGGCGTTCTCAGAATATAAAAGTACTGCAGTGT
80413 TGAAATTGTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 59 1.00
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (72 bp):
CCTCTTTTGCTAAGTGGTCGGCCATCCCATTAGGCGTTCTCAGAATATAAAAGTACTGCAGTGTC
GAGCATA
Found at i:85726 original size:20 final size:19
Alignment explanation
Indices: 85688--85726 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
85678 TAAGAGAATT
* *
85688 TAATTTTTTATAAATATAA
1 TAATTTTTTAAAAAAATAA
85707 TAATTTTTTAAAGAAAATAA
1 TAATTTTTTAAA-AAAATAA
85727 ATTTCAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTTTTTAAAAAAATAA
Found at i:90819 original size:15 final size:15
Alignment explanation
Indices: 90785--90819 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
90775 AAATTACATG
* *
90785 AAAAGAAATATTTTT
1 AAAATAAATATTTGT
90800 AAAATAAATATTTGT
1 AAAATAAATATTTGT
90815 AAAAT
1 AAAAT
90820 CTAATCTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (15 bp):
AAAATAAATATTTGT
Found at i:96314 original size:23 final size:23
Alignment explanation
Indices: 96284--96343 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
96274 TAGCAACCGG
*
96284 CAAGCATCAATGTACCAATTCAA
1 CAAGCATCATTGTACCAATTCAA
* * *
96307 CAAGCATCATTGCATCAATTCAG
1 CAAGCATCATTGTACCAATTCAA
96330 CAAGCATCATTGTA
1 CAAGCATCATTGTA
96344 ATACGAATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (23 bp):
CAAGCATCATTGTACCAATTCAA
Found at i:96380 original size:6 final size:6
Alignment explanation
Indices: 96371--96407 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
96361 AATAAAATAT
* *
96371 AGATAC AGATAC AGATAT AGATAC AGATAC AAATAC A
1 AGATAC AGATAC AGATAC AGATAC AGATAC AGATAC A
96408 AATATCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.19
Consensus pattern (6 bp):
AGATAC
Found at i:96390 original size:18 final size:18
Alignment explanation
Indices: 96367--96401 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
96357 TATGAATAAA
96367 ATATAGATACAGATACAG
1 ATATAGATACAGATACAG
96385 ATATAGATACAGATACA
1 ATATAGATACAGATACA
96402 AATACAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.23
Consensus pattern (18 bp):
ATATAGATACAGATACAG
Found at i:96484 original size:9 final size:9
Alignment explanation
Indices: 96451--96525 Score: 59
Period size: 9 Copynumber: 8.4 Consensus size: 9
96441 ATCATATTAC
96451 TATATATATA
1 TATATATA-A
96461 TATATATAA
1 TATATATAA
96470 -ACTATATAA
1 TA-TATATAA
* *
96479 TTTATACAA
1 TATATATAA
96488 TATATAT--
1 TATATATAA
*
96495 TATTTATAA
1 TATATATAA
*
96504 TTATACATAA
1 -TATATATAA
96514 TATATA-AA
1 TATATATAA
96522 TATA
1 TATA
96526 AATTGTATAG
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.12
8 7 0.13
9 24 0.46
10 15 0.29
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATATAA
Found at i:96621 original size:25 final size:22
Alignment explanation
Indices: 96588--96650 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 22
96578 AATATATTAC
*
96588 TATATATATATATACTCTATAATT
1 TATACATATATATA-TCTATAA-T
*
96612 TATACAATATATATTATTTATAAT
1 TATAC-ATATATA-TATCTATAAT
96636 TATACATAATATATA
1 TATACAT-ATATATA
96651 AATATAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 4 0.12
24 15 0.44
25 13 0.38
26 2 0.06
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (22 bp):
TATACATATATATATCTATAAT
Found at i:96629 original size:131 final size:134
Alignment explanation
Indices: 96403--96840 Score: 555
Period size: 131 Copynumber: 3.1 Consensus size: 134
96393 ACAGATACAA
* *
96403 ATACAAATATCA-ATATAAATATAAACTCTAAACCCTTAATCATATTACTATATA-TATATATAT
1 ATAC-AATATCATATATAAATATAAACCCTAAACCC-TAA-CA-ACTA-TAT-TACTATATATAT
* *
96466 ATAAACTATATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTG
60 ATATACTCTATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTG
96531 TATAGTTTAT
125 TATAGTTTAT
96541 ATACAATATCA-ATATAAATATAAACCCTAAACCCTAA-AA-TATATTACTATATATATATATAC
1 ATACAATATCATATATAAATATAAACCCTAAACCCTAACAACTATATTACTATATATATATATAC
96603 TCTATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTGTATAGT
66 TCTATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTGTATAG-
96668 TTATAT
130 TT-TAT
* *
96674 ACAATATCAATATCAATATCAATATCAATATAAACCCTAAACCTTGAACCTTGAACCATATTACT
1 ---ATA-CAATATC-ATAT--ATA--AATATAAACCCTAAACCCT-AA-C---AACTATATTAC-
96739 ATATATATATATATACTCTATAATTTATACAATATATATTATTTATAATTATACATAATATATAA
51 -TATATATATATATACTCTATAATTTATACAATATATATTATTTATAATTATACATAATATATAA
96804 ATATAAATTGTATAGTTTAT
115 ATATAAATTGTATAGTTTAT
*
96824 ATATAAT-TCATATATAA
1 ATACAATATCATATATAA
96841 TTTATATATA
Statistics
Matches: 272, Mismatches: 6, Indels: 42
0.85 0.02 0.13
Matches are distributed among these distances:
130 2 0.01
131 80 0.29
132 4 0.01
133 4 0.01
134 1 0.00
136 6 0.02
137 36 0.13
138 5 0.02
139 2 0.01
140 1 0.00
141 3 0.01
142 3 0.01
143 18 0.07
144 6 0.02
145 2 0.01
146 3 0.01
147 3 0.01
149 2 0.01
150 10 0.04
151 2 0.01
152 79 0.29
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.40
Consensus pattern (134 bp):
ATACAATATCATATATAAATATAAACCCTAAACCCTAACAACTATATTACTATATATATATATAC
TCTATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTGTATAGT
TTAT
Found at i:96686 original size:6 final size:6
Alignment explanation
Indices: 96670--96704 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
96660 TGTATAGTTT
96670 ATATACA ATATCA ATATCA ATATCA ATATCA ATAT
1 ATAT-CA ATATCA ATATCA ATATCA ATATCA ATAT
96705 AAACCCTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATCA
Found at i:96745 original size:2 final size:2
Alignment explanation
Indices: 96738--96993 Score: 86
Period size: 2 Copynumber: 126.0 Consensus size: 2
96728 ACCATATTAC
* * *
96738 TA TA TA TA TA TA TA TA CTC TA TA -A TT TA TA CA -A TA TA TA T-
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
96778 TA TT TA TA -A T- TA TA CA TA -A TA TA TA AA TA TA AA T- TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
96816 TA GTT TA TA TA TA -A T- TCA TA TA TA -A TT TA TA TA TA AA CTA
1 TA -TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA -TA
* * * *
96856 TG TA GTT TC TA TA TA GTA TA TA TA GTT TA TA TA TA TA -A TA TA
1 TA TA -TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * ** *
96898 TA GTA TA TA AA TA TA AA CTA TA GTA TA TA TA TA TA GG TCA TA TG
1 TA -TA TA TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA T-A TA TA
* *
96942 TA AA CTA TA TA GTA TA TA AA TA TCA -A CTA TA GTA TA TA TA TA TA
1 TA TA -TA TA TA -TA TA TA TA TA T-A TA -TA TA -TA TA TA TA TA TA
96986 TA TA TA TA
1 TA TA TA TA
96994 GGTCATATGT
Statistics
Matches: 185, Mismatches: 41, Indels: 56
0.66 0.15 0.20
Matches are distributed among these distances:
1 12 0.06
2 152 0.82
3 21 0.11
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.45
Consensus pattern (2 bp):
TA
Found at i:96846 original size:9 final size:10
Alignment explanation
Indices: 96770--96851 Score: 53
Period size: 11 Copynumber: 7.8 Consensus size: 10
96760 AATTTATACA
96770 ATATAT-ATT
1 ATATATAATT
*
96779 ATTTATAATT
1 ATATATAATT
*
96789 ATACATAATAT
1 ATATATAAT-T
96800 ATAAATATAAATT
1 AT--ATAT-AATT
*
96813 GTATAGT--TT
1 ATATA-TAATT
96822 ATATATAATT
1 ATATATAATT
96832 CATATATAATTT
1 -ATATATAA-TT
96844 ATATATAA
1 ATATATAA
96852 ACTATGTAGT
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
8 1 0.02
9 11 0.19
10 12 0.21
11 22 0.39
12 3 0.05
13 5 0.09
14 3 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (10 bp):
ATATATAATT
Found at i:96849 original size:13 final size:11
Alignment explanation
Indices: 96814--96851 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
96804 ATATAAATTG
*
96814 TATAGTTTATA
1 TATAATTTATA
*
96825 TATAATTCATA
1 TATAATTTATA
96836 TATAATTTATA
1 TATAATTTATA
96847 TATAA
1 TATAA
96852 ACTATGTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (11 bp):
TATAATTTATA
Found at i:96911 original size:22 final size:21
Alignment explanation
Indices: 96738--97026 Score: 96
Period size: 22 Copynumber: 13.4 Consensus size: 21
96728 ACCATATTAC
* * *
96738 TATATATATATATATACTCTA
1 TATATATAAATATATAGTATA
* * *
96759 TAATTTATACAATATATATTATT
1 T-ATATATA-AATATATAGTATA
* * *
96782 TATA-AT-TATACATAATATA
1 TATATATAAATATATAGTATA
* *
96801 TAAATATAAATTGTATAGT-T-
1 TATATATAAA-TATATAGTATA
* *
96821 TATATATAATTCATATA-TAATT
1 TATATATAAAT-ATATAGT-ATA
*
96843 TATATATAAACTATGTAGT-T-
1 TATATATAAA-TATATAGTATA
* * *
96863 TCTATATAGTATATATAGTTTA
1 TATATATA-AATATATAGTATA
96885 TATATAT-AATATATAGTATA
1 TATATATAAATATATAGTATA
*
96905 TAAATATAAACTATAGTA-TATA
1 TATATATAAA-TATA-TAGTATA
* * * *
96927 TATATAGGTCATATGTAAACTATA
1 TATATA--T-AAATATATAGTATA
*
96951 TAGTATATAAATATCA-ACTATA
1 TA-TATATAAATAT-ATAGTATA
*
96973 GTATATATATATATATA-TATA
1 -TATATATAAATATATAGTATA
* *
96994 GGTCATATGTAAACTATATAGTTTA
1 --T-ATATATAAA-TATATAGTATA
97019 TATATATA
1 TATATATA
97027 TAGTTCATAT
Statistics
Matches: 201, Mismatches: 38, Indels: 57
0.68 0.13 0.19
Matches are distributed among these distances:
19 14 0.07
20 45 0.22
21 16 0.08
22 74 0.37
23 27 0.13
24 16 0.08
25 9 0.04
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.44
Consensus pattern (21 bp):
TATATATAAATATATAGTATA
Found at i:96929 original size:53 final size:53
Alignment explanation
Indices: 96867--96993 Score: 177
Period size: 53 Copynumber: 2.4 Consensus size: 53
96857 GTAGTTTCTA
96867 TATAGTATATATAGTTTATATATATAA-TATATAGTATATAAATATAAACTATAG
1 TATA-TATATATAGTTTATATATA-AACTATATAGTATATAAATATAAACTATAG
* * * *
96921 TATATATATATAGGTCATATGTAAACTATATAGTATATAAATATCAACTATAG
1 TATATATATATAGTTTATATATAAACTATATAGTATATAAATATAAACTATAG
*
96974 TATATATATATA-TATATATA
1 TATATATATATAGTTTATATA
96994 GGTCATATGT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 6 0.09
53 54 0.84
54 4 0.06
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (53 bp):
TATATATATATAGTTTATATATAAACTATATAGTATATAAATATAAACTATAG
Found at i:97093 original size:20 final size:18
Alignment explanation
Indices: 96998--97155 Score: 87
Period size: 18 Copynumber: 8.8 Consensus size: 18
96988 TATATAGGTC
96998 ATATGTAAACTATATAGTTT
1 ATATGTAAA--ATATAGTTT
* *
97018 ATA--T-ATATATAGTTC
1 ATATGTAAAATATAGTTT
*
97033 ATATGTAAACTATAG-TT
1 ATATGTAAAATATAGTTT
*
97050 AGTATATAAACTATATAGTTT
1 A-TATGTAAA--ATATAGTTT
*
97071 ATATGTAAAATATAGTTC
1 ATATGTAAAATATAGTTT
* **
97089 ATATAT-AAATATCAACTT
1 ATATGTAAAATAT-AGTTT
* *
97107 -TAT-TATATATATAGTTC
1 ATATGTA-AAATATAGTTT
*
97124 ATATGTAAACTATAGTTT
1 ATATGTAAAATATAGTTT
* *
97142 ATATATAATATATA
1 ATATGTAAAATATA
97156 AATATAAACT
Statistics
Matches: 103, Mismatches: 23, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
15 11 0.11
16 1 0.01
17 15 0.15
18 56 0.54
19 2 0.02
20 15 0.15
21 3 0.03
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.44
Consensus pattern (18 bp):
ATATGTAAAATATAGTTT
Found at i:97144 original size:31 final size:31
Alignment explanation
Indices: 97092--97185 Score: 99
Period size: 31 Copynumber: 3.1 Consensus size: 31
97082 ATAGTTCATA
* *
97092 TATAAATATCAACTTTA--TTATATATATAG
1 TATAAATATAAACTATAGTTTATATATATAG
* *
97121 T-TCATATGTAAACTATAGTTTATATATAATA-
1 TAT-AAATATAAACTATAGTTTATATAT-ATAG
97152 TATAAATATAAACTATAGTTTATATA-ATAG
1 TATAAATATAAACTATAGTTTATATATATAG
97182 TATA
1 TATA
97186 TAAATAGTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
28 1 0.02
29 14 0.26
30 4 0.08
31 30 0.57
32 4 0.08
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (31 bp):
TATAAATATAAACTATAGTTTATATATATAG
Found at i:97187 original size:12 final size:11
Alignment explanation
Indices: 97166--97202 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
97156 AATATAAACT
*
97166 ATAGTTTATATA
1 ATAGTATATA-A
97178 ATAGTATATAA
1 ATAGTATATAA
97189 ATAGTATATAA
1 ATAGTATATAA
97200 ATA
1 ATA
97203 TAAATTATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (11 bp):
ATAGTATATAA
Found at i:97191 original size:32 final size:31
Alignment explanation
Indices: 97129--97191 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
97119 AGTTCATATG
97129 TAAACTATAGTTTATATATAATATATAAATA
1 TAAACTATAGTTTATATATAATATATAAATA
*
97160 TAAACTATAGTTTATATAATAGTATATAAATA
1 TAAACTATAGTTTATAT-ATAATATATAAATA
97192 GTATATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 17 0.57
32 13 0.43
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (31 bp):
TAAACTATAGTTTATATATAATATATAAATA
Found at i:97300 original size:2 final size:2
Alignment explanation
Indices: 97293--97649 Score: 158
Period size: 2 Copynumber: 178.0 Consensus size: 2
97283 ACCCTAAACC
97293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
97335 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA ACT AT AT AGT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT
* * * *
97379 AT AT -T A- AT AA ACT AT AT A- AT TT AT AC A- AT AT AT -T AT TT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
97417 AT A- AT -T AT AT AT AT AT AA AT AT A- AT -T GT AT AGT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* * * * * *
97456 AT A- AT -T CAT AT AT A- AT TT AT AT AA ACT AT GT AG GT -T CT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT
*
97496 AT AGT -T CA- AT AGT -T CAT AT AT AA ACT AT AT AGT AT -T AT AGT
1 AT A-T AT -AT AT A-T AT -AT AT AT AT A-T AT AT A-T AT AT AT A-T
* * * * * *
97537 TT AT AC AT GGT AT AT AT AGT TT AT AC AT A- AT AT AT AT AT AA ACT
1 AT AT AT AT -AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT A-T
* * * *
97581 AT AT AGT TT AT AT AT AT A- AT AC AT AT ACT TT AT AT AT AA ACT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T
*
97623 AT AT AGT TT AT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT
97650 TAGTTATTTT
Statistics
Matches: 266, Mismatches: 50, Indels: 78
0.68 0.13 0.20
Matches are distributed among these distances:
1 19 0.07
2 227 0.85
3 20 0.08
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (2 bp):
AT
Found at i:97607 original size:31 final size:31
Alignment explanation
Indices: 97549--97607 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
97539 ATACATGGTA
*
97549 TATATAGTTTATACATAATATATATATAAAC
1 TATATAGTTTATACATAATATACATATAAAC
*
97580 TATATAGTTTATATAT-ATAATACATATA
1 TATATAGTTTATACATAAT-ATACATATA
97608 CTTTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (31 bp):
TATATAGTTTATACATAATATACATATAAAC
Found at i:97616 original size:31 final size:31
Alignment explanation
Indices: 97549--97614 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
97539 ATACATGGTA
*
97549 TATATAGTTTATACATAATATATATATAAAC
1 TATATAGTTTATACATAATATATACATAAAC
* *
97580 TATATAGTTTATATAT-ATA-ATACATATAC
1 TATATAGTTTATACATAATATATACATAAAC
*
97609 TTTATA
1 TATATA
97615 TATAAACTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 13 0.42
30 3 0.10
31 15 0.48
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (31 bp):
TATATAGTTTATACATAATATATACATAAAC
Found at i:99880 original size:19 final size:20
Alignment explanation
Indices: 99856--99901 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
99846 AAATTTGATT
99856 TTTATATTAATTCA-AATTC
1 TTTATATTAATTCATAATTC
*
99875 TTTATATT-ATTTATAATTC
1 TTTATATTAATTCATAATTC
99894 -TTATATTA
1 TTTATATTA
99902 TAAATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATATTAATTCATAATTC
Found at i:99900 original size:37 final size:36
Alignment explanation
Indices: 99786--99901 Score: 98
Period size: 37 Copynumber: 3.2 Consensus size: 36
99776 AAATTTAGTT
*
99786 TTATATTAATTACAATTCTTTATATTTTTTATAATTC
1 TTATATTAATTA-AATTCTTTATATTATTTATAATTC
* ** * *
99823 TTACATT-A-T-AATT-TGAATATTATAAATT-TGATTT
1 TTATATTAATTAAATTCTTTATATTAT---TTATAATTC
99857 TTATATTAATTCAAATTCTTTATATTATTTATAATTC
1 TTATATTAATT-AAATTCTTTATATTATTTATAATTC
99894 TTATATTA
1 TTATATTA
99902 TAAATTTTAT
Statistics
Matches: 59, Mismatches: 11, Indels: 18
0.67 0.12 0.20
Matches are distributed among these distances:
32 7 0.12
33 4 0.07
34 10 0.17
35 4 0.07
36 4 0.07
37 18 0.31
38 4 0.07
39 8 0.14
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (36 bp):
TTATATTAATTAAATTCTTTATATTATTTATAATTC
Found at i:99915 original size:13 final size:14
Alignment explanation
Indices: 99881--99917 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
99871 ATTCTTTATA
99881 TTATTTAT-AATTC
1 TTATTTATAAATTC
99894 TTATATTATAAATT-
1 TTAT-TTATAAATTC
99908 TTATTTATAA
1 TTATTTATAA
99918 TCACTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 8 0.36
15 4 0.18
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTATAAATTC
Found at i:100538 original size:23 final size:23
Alignment explanation
Indices: 100508--100567 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
100498 TAGCAACCGG
*
100508 CAAGCATCAATGTACCAATTCAA
1 CAAGCATCATTGTACCAATTCAA
* * *
100531 CAAGCATCATTGCATCAATTCAG
1 CAAGCATCATTGTACCAATTCAA
100554 CAAGCATCATTGTA
1 CAAGCATCATTGTA
100568 ATACGAATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (23 bp):
CAAGCATCATTGTACCAATTCAA
Found at i:100611 original size:6 final size:6
Alignment explanation
Indices: 100585--100631 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
100575 TACGAATAAA
* * * *
100585 ATACAG ATGCAG ATGCAG ATACAG ATATAG ATACAG ATACAA ATACA
1 ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG ATACAG ATACA
100632 AATATCAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATACAG
Found at i:100714 original size:18 final size:17
Alignment explanation
Indices: 100682--100733 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
100672 CCATATTACT
*
100682 ATATATATATATATAAAA
1 ATATATA-ATTTATAAAA
*
100700 ACTATATAATTTATACAAT
1 A-TATATAATTTATA-AAA
*
100719 ATATATTATTTATAA
1 ATATATAATTTATAA
100734 TTATACATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 1 0.03
18 19 0.66
19 9 0.31
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATATAATTTATAAAA
Found at i:100827 original size:2 final size:2
Alignment explanation
Indices: 100815--100892 Score: 60
Period size: 2 Copynumber: 41.5 Consensus size: 2
100805 AAACCCTAAA
* * *
100815 AT AT AT TT AT AT AT AT AT AT AT AT ACT AT AT AT TT AT AC A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* *
100857 AT AT AT -T AT -T AT A- AT -T AT AC AT A- AT AT AT AA AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
100893 AATTGTATAG
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
1 6 0.10
2 52 0.87
3 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:100890 original size:137 final size:140
Alignment explanation
Indices: 100627--101082 Score: 617
Period size: 146 Copynumber: 3.2 Consensus size: 140
100617 ACAGATACAA
* *
100627 ATACAAATATCAATATAAATATAAATATAAACTCTAAACCCTAAACCATATTACTATATATATAT
1 ATAC-AATATCAATATCAATATAAATATAAACCCTAAACCCTAAA-CATA-TA-TATATATATAT
* *
100692 ATATAAAAACTATATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAA
62 ATATATATACTATATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAA
100757 ATTGTATAGTTTAT
127 ATTGTATAGTTTAT
*
100771 ATACAATATCAATATCAATATAAATATAAACCCTAAACCCTAAA-ATATATTTATATATATATAT
1 ATACAATATCAATATCAATATAAATATAAACCCTAAACCCTAAACATATATATATATATATATAT
100835 ATATACTATAT-ATTTATACAATATATATTA-TTATAATTATACATAATATATAAATATAAATTG
66 ATATACTATATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTG
100898 TATAG-TT-T
131 TATAGTTTAT
* *
100906 ATACAATATCAATATCAATATCAATATAAACCCTAAACCTTGAACCATATACTATATATATATAT
1 ATACAATATCAATATCAATATAAATATAAACCCTAAA-C-----CC-TA-A--ACATATATATAT
100971 ATATATATATATATACTATATAATTTATAC-A-ATATATTATTTATAATTATACATAATATAT-A
56 ATATATATATATATACTATATAATTTATACAATATATATTATTTATAATTATACATAATATATAA
101033 ATATAAATTGTATAGTTTAT
121 ATATAAATTGTATAGTTTAT
* * *
101053 ATATAAT-TCATATAT-AATTTATATATAAAC
1 ATACAATATCA-ATATCAATATAAATATAAAC
101083 TATGTAGTTT
Statistics
Matches: 285, Mismatches: 11, Indels: 30
0.87 0.03 0.09
Matches are distributed among these distances:
135 37 0.13
136 3 0.01
137 38 0.13
138 19 0.07
139 23 0.08
140 2 0.01
141 5 0.02
142 2 0.01
143 39 0.14
144 4 0.01
145 25 0.09
146 69 0.24
147 19 0.07
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (140 bp):
ATACAATATCAATATCAATATAAATATAAACCCTAAACCCTAAACATATATATATATATATATAT
ATATACTATATAATTTATACAATATATATTATTTATAATTATACATAATATATAAATATAAATTG
TATAGTTTAT
Found at i:100965 original size:2 final size:2
Alignment explanation
Indices: 100952--101213 Score: 118
Period size: 2 Copynumber: 129.5 Consensus size: 2
100942 ACCTTGAACC
100952 AT AT ACT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT AT A- AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
* * * *
100995 TT AT AC A- AT AT AT -T AT TT AT A- AT -T AT AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
101032 A- AT AT AA AT -T GT AT AGT TT AT AT AT A- AT -T CAT AT AT A- AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT -AT AT AT AT AT
* * * * * *
101071 TT AT AT AT AA ACT AT GT AGT TT CT AT AT AGT AT AT AT AGT TT AT
1 AT AT AT AT AT A-T AT AT A-T AT AT AT AT A-T AT AT AT A-T AT AT
* *
101115 AT AT AT A- AT AT AT AT AT AT AT AA ACT AT AGT AT AT AT AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A-T AT AT AT AT AT AT
* * * *
101158 GT CAT AT GT AA ACT AT AT AGT AT AT AA AT AT CA- ACT AT AGT AT
1 AT -AT AT AT AT A-T AT AT A-T AT AT AT AT AT -AT A-T AT A-T AT
101201 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
101214 GGTCATATGT
Statistics
Matches: 196, Mismatches: 35, Indels: 58
0.68 0.12 0.20
Matches are distributed among these distances:
1 13 0.07
2 161 0.82
3 22 0.11
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:101149 original size:31 final size:31
Alignment explanation
Indices: 101112--101264 Score: 101
Period size: 31 Copynumber: 5.1 Consensus size: 31
101102 ATATATAGTT
101112 TATATATATAATATATAT-ATATATAAACTA
1 TATATATATAATATATATCATATATAAACTA
** *
101142 TAGTATATAT-ATATAGGTCATATGTAAACTA
1 TA-TATATATAATATATATCATATATAAACTA
*
101173 TATAGTATAT-A-A-ATATCA-ACTAT--AGTA
1 TATA-TATATAATATATATCATA-TATAAACTA
** *
101200 TATATATAT-ATATAGGTCATATGTAAACTA
1 TATATATATAATATATATCATATATAAACTA
* *
101230 TATAGTTTAT-ATATATAGTTCATATGTAAACTA
1 TATA-TATATAATATATA--TCATATATAAACTA
101263 TA
1 TA
101265 GTTAGTATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
26 6 0.06
27 8 0.08
28 7 0.07
29 7 0.07
30 18 0.19
31 35 0.36
33 16 0.16
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (31 bp):
TATATATATAATATATATCATATATAAACTA
Found at i:101177 original size:33 final size:33
Alignment explanation
Indices: 101140--101302 Score: 148
Period size: 33 Copynumber: 5.1 Consensus size: 33
101130 ATATATAAAC
101140 TATAGTATATATATATAGGTCATATGTAAACTA
1 TATAGTATATATATATAGGTCATATGTAAACTA
*
101173 TATAGTATATA-A-ATA--TCA-A-CT--A-TA
1 TATAGTATATATATATAGGTCATATGTAAACTA
101197 GTATA-TATATATATATAGGTCATATGTAAACTA
1 -TATAGTATATATATATAGGTCATATGTAAACTA
* *
101230 TATAGTTTATATATATAGTTCATATGTAAACTA
1 TATAGTATATATATATAGGTCATATGTAAACTA
* * *
101263 TAGTTAGTATATAAACTATATAGTTTATATGTAAAATA
1 TA--TAGTATAT--A-TATATAGGTCATATGTAAACTA
101301 TA
1 TA
101303 GTTCATATAA
Statistics
Matches: 107, Mismatches: 7, Indels: 27
0.76 0.05 0.19
Matches are distributed among these distances:
24 8 0.07
25 6 0.06
26 3 0.03
27 1 0.01
28 4 0.04
29 4 0.04
30 1 0.01
31 3 0.03
32 6 0.06
33 41 0.38
35 7 0.07
37 1 0.01
38 22 0.21
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.41
Consensus pattern (33 bp):
TATAGTATATATATATAGGTCATATGTAAACTA
Found at i:101233 original size:20 final size:19
Alignment explanation
Indices: 101151--101302 Score: 60
Period size: 20 Copynumber: 8.2 Consensus size: 19
101141 ATAGTATATA
101151 TATATAGGTCATATGTAAAC
1 TATATAGGT-ATATGTAAAC
*
101171 TATATA-GTATAT-AAATATC
1 TATATAGGTATATGTAA-A-C
* * *
101190 AACTATA-GTATATATATA-
1 TA-TATAGGTATATGTAAAC
101208 TATATAGGTCATATGTAAAC
1 TATATAGGT-ATATGTAAAC
*
101228 TATATA-G--T-T-TATA-
1 TATATAGGTATATGTAAAC
*
101241 TATATAGTTCATATGTAAAC
1 TATATAGGT-ATATGTAAAC
101261 TATAGTTA-GTATA--TAAAC
1 TATA--TAGGTATATGTAAAC
* *
101279 TATATAGTTTATATGTAAAA
1 TATATAG-GTATATGTAAAC
101299 TATA
1 TATA
101303 GTTCATATAA
Statistics
Matches: 99, Mismatches: 13, Indels: 40
0.65 0.09 0.26
Matches are distributed among these distances:
13 6 0.06
14 3 0.03
15 1 0.01
16 3 0.03
17 7 0.07
18 22 0.22
19 15 0.15
20 38 0.38
21 2 0.02
22 2 0.02
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (19 bp):
TATATAGGTATATGTAAAC
Found at i:101265 original size:31 final size:31
Alignment explanation
Indices: 101130--101275 Score: 121
Period size: 31 Copynumber: 4.8 Consensus size: 31
101120 TAATATATAT
*
101130 ATATATAAAC-TATAGTATATATATATAGGTC
1 ATATGTAAACATATAGT-TATATATATAGGTC
*
101161 ATATGTAAACTATATAG-TATATAAATA--TC
1 ATATGTAAAC-ATATAGTTATATATATAGGTC
* * *
101190 A-A-CTATA-GTATA-TATATATATATAGGTC
1 ATATGTAAACATATAGT-TATATATATAGGTC
*
101218 ATATGTAAACTATATAGTTTATATATATAGTTC
1 ATATGTAAAC-ATATAG-TTATATATATAGGTC
101251 ATATGTAAAC-TATAGTTAGTATATA
1 ATATGTAAACATATAGTTA-TATATA
101276 AACTATATAG
Statistics
Matches: 92, Mismatches: 10, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
25 4 0.04
26 9 0.10
27 3 0.03
28 4 0.04
29 4 0.04
30 6 0.07
31 29 0.32
32 4 0.04
33 28 0.30
34 1 0.01
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (31 bp):
ATATGTAAACATATAGTTATATATATAGGTC
Found at i:101361 original size:18 final size:18
Alignment explanation
Indices: 101190--101408 Score: 89
Period size: 18 Copynumber: 12.8 Consensus size: 18
101180 TATAAATATC
* *
101190 AACTATAGTATATATATA
1 AACTATAGTTTATATGTA
* * *
101208 TA-TATAGGTCATATGTA
1 AACTATAGTTTATATGTA
101225 AACTATATAGTTTATA--T-
1 AAC--TATAGTTTATATGTA
*
101242 -A-TATAGTTCATATGTA
1 AACTATAGTTTATATGTA
*
101258 AACTATAG-TTAGTATATA
1 AACTATAGTTTA-TATGTA
101276 AACTATATAGTTTATATGTA
1 AAC--TATAGTTTATATGTA
* *
101296 AAATATAGTTCATA--TA
1 AACTATAGTTTATATGTA
* *
101312 AA-TATCAACTTTAT-TATA
1 AACTAT--AGTTTATATGTA
* *
101330 TA-TATAGTTCATATGTA
1 AACTATAGTTTATATGTA
* *
101347 AACTATATTTTATATAT-
1 AACTATAGTTTATATGTA
**
101364 AA-TATA-TAAATAT-T-
1 AACTATAGTTTATATGTA
101378 AACTATAGTTTATA--TA
1 AACTATAGTTTATATGTA
101394 AACTATAGTTTATAT
1 AACTATAGTTTATAT
101409 AAATAGTATA
Statistics
Matches: 151, Mismatches: 28, Indels: 45
0.67 0.12 0.20
Matches are distributed among these distances:
13 10 0.07
14 3 0.02
15 14 0.09
16 32 0.21
17 26 0.17
18 42 0.28
20 21 0.14
21 3 0.02
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (18 bp):
AACTATAGTTTATATGTA
Found at i:101420 original size:11 final size:11
Alignment explanation
Indices: 101404--101435 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
101394 AACTATAGTT
101404 TATATAAATAG
1 TATATAAATAG
101415 TATATAAATAG
1 TATATAAATAG
101426 TATATAAATA
1 TATATAAATA
101436 TAAATTATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (11 bp):
TATATAAATAG
Found at i:101420 original size:13 final size:12
Alignment explanation
Indices: 101398--101435 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
101388 TATATAAACT
101398 ATAGTTTATATAA
1 ATAG-TTATATAA
101411 ATAG-TATATAA
1 ATAGTTATATAA
101422 ATAG-TATATAA
1 ATAGTTATATAA
101433 ATA
1 ATA
101436 TAAATTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 21 0.84
13 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (12 bp):
ATAGTTATATAA
Found at i:101562 original size:22 final size:24
Alignment explanation
Indices: 101528--101655 Score: 97
Period size: 22 Copynumber: 5.3 Consensus size: 24
101518 CTAAACCATA
*
101528 TATATATATATAAACTATATAGTT
1 TATATATATATAAACTATATAATT
101552 TATAT-TA-ATAAACTATATAATT
1 TATATATATATAAACTATATAATT
* * * *
101574 TATACA-ATATATATTAT-TTATAT
1 TATATATATATAAACTATATAAT-T
101597 TATATAATATATAAA-TATA-AATT
1 TATAT-ATATATAAACTATATAATT
* *
101620 GTATAGTTTATATAATTCATATATAATT
1 -TATA-TATATATAA-AC-TATATAATT
101648 TATATATA
1 TATATATA
101656 AACTATGTAG
Statistics
Matches: 81, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
22 22 0.27
23 15 0.19
24 22 0.27
25 7 0.09
26 3 0.04
27 8 0.10
28 4 0.05
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (24 bp):
TATATATATATAAACTATATAATT
Found at i:101577 original size:9 final size:9
Alignment explanation
Indices: 101565--101653 Score: 54
Period size: 9 Copynumber: 9.7 Consensus size: 9
101555 ATTAATAAAC
101565 TATATAATT
1 TATATAATT
* *
101574 TATACAATA
1 TATATAATT
*
101583 TATATTATT
1 TATATAATT
* *
101592 TATATTATA
1 TATATAATT
*
101601 TA-ATATATA
1 TATATA-ATT
* *
101610 AATATAAAT
1 TATATAATT
* *
101619 TGTATAGTT
1 TATATAATT
101628 TATATAATT
1 TATATAATT
101637 CATATATAATT
1 --TATATAATT
101648 TATATA
1 TATATA
101654 TAAACTATGT
Statistics
Matches: 60, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
8 2 0.03
9 46 0.77
10 3 0.05
11 9 0.15
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (9 bp):
TATATAATT
Found at i:101601 original size:18 final size:18
Alignment explanation
Indices: 101565--101651 Score: 54
Period size: 20 Copynumber: 4.7 Consensus size: 18
101555 ATTAATAAAC
101565 TATATAATTTATACAATA
1 TATATAATTTATACAATA
* *
101583 TATATTATTTATATTATATAA
1 TATATAATTTATA-CA-AT-A
*
101604 TATATAA-ATATA-AAT-
1 TATATAATTTATACAATA
* * *
101619 TGTATAGTTTATATAATTCA
1 TATATAATTTATACAA-T-A
101639 TATATAATTTATA
1 TATATAATTTATA
101652 TATAAACTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
15 5 0.10
16 4 0.08
17 4 0.08
18 14 0.27
19 1 0.02
20 17 0.33
21 7 0.13
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (18 bp):
TATATAATTTATACAATA
Found at i:101731 original size:2 final size:2
Alignment explanation
Indices: 101724--101830 Score: 74
Period size: 2 Copynumber: 51.5 Consensus size: 2
101714 TTATACATGG
* * * *
101724 TA TA TA TA GTT TA TA CA TA -A TA TA TA TA TA AA CTA TA TA GTT
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
* * * *
101766 TA TA TA TA TA -A TA CA TA TA CTT TA TA TA TA AA CTA TA TA GTT
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA -TA
101808 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
101831 TAGTTATTTT
Statistics
Matches: 81, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
1 2 0.02
2 73 0.90
3 6 0.07
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:101733 original size:20 final size:20
Alignment explanation
Indices: 101701--101751 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
101691 TATAAACTAT
101701 ATAGTAT-TATAGTTTATAC
1 ATAGTATATATAGTTTATAC
*
101720 ATGGTATATATAGTTTATAC
1 ATAGTATATATAGTTTATAC
*
101740 ATAATATATATA
1 ATAGTATATATA
101752 TAAACTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (20 bp):
ATAGTATATATAGTTTATAC
Found at i:101769 original size:20 final size:20
Alignment explanation
Indices: 101746--101815 Score: 97
Period size: 20 Copynumber: 3.4 Consensus size: 20
101736 ATACATAATA
101746 TATATATAAACTATATAGTT
1 TATATATAAACTATATAGTT
*
101766 TATATATATAA-TACATATACTT
1 TATATATA-AACT--ATATAGTT
101788 TATATATAAACTATATAGTT
1 TATATATAAACTATATAGTT
101808 TATATATA
1 TATATATA
101816 TATATATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
20 24 0.55
21 4 0.09
22 16 0.36
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (20 bp):
TATATATAAACTATATAGTT
Found at i:101771 original size:42 final size:42
Alignment explanation
Indices: 101736--101830 Score: 144
Period size: 42 Copynumber: 2.4 Consensus size: 42
101726 TATATAGTTT
101736 ATACATA-A-TATATATATAAACTATATAGTTTATATATATA
1 ATACATATACTATATATATAAACTATATAGTTTATATATATA
*
101776 ATACATATACTTTATATATAAACTATATAGTTTATATATAT-
1 ATACATATACTATATATATAAACTATATAGTTTATATATATA
*
101817 ATATATATA-TATAT
1 ATACATATACTATAT
101831 TAGTTATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 11 0.22
41 9 0.18
42 30 0.60
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.45
Consensus pattern (42 bp):
ATACATATACTATATATATAAACTATATAGTTTATATATATA
Found at i:101784 original size:31 final size:31
Alignment explanation
Indices: 101726--101784 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
101716 ATACATGGTA
*
101726 TATATAGTTTATACATAATATATATATAAAC
1 TATATAGTTTATACATAATATACATATAAAC
*
101757 TATATAGTTTATATAT-ATAATACATATA
1 TATATAGTTTATACATAAT-ATACATATA
101785 CTTTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (31 bp):
TATATAGTTTATACATAATATACATATAAAC
Found at i:101793 original size:31 final size:31
Alignment explanation
Indices: 101726--101791 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
101716 ATACATGGTA
*
101726 TATATAGTTTATACATAATATATATATAAAC
1 TATATAGTTTATACATAATATATACATAAAC
* *
101757 TATATAGTTTATATAT-ATA-ATACATATAC
1 TATATAGTTTATACATAATATATACATAAAC
*
101786 TTTATA
1 TATATA
101792 TATAAACTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 13 0.42
30 3 0.10
31 15 0.48
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (31 bp):
TATATAGTTTATACATAATATATACATAAAC
Found at i:102406 original size:212 final size:209
Alignment explanation
Indices: 101913--102602 Score: 1030
Period size: 207 Copynumber: 3.3 Consensus size: 209
101903 TGATCCCTTT
* * **
101913 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCATCTACT
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
* * *
101978 TTTTATTTGCATATGAAATTAACCCATACTTATTACTTATTTCTATTATTATTTGGCCATAACTT
66 TTTTATTTGCATATGAAATTGA-CCATACTTATTACTTATTTCTATTTTTAATTGGCCATAACTT
* * *
102043 TTT-AATGAGTATAATTTAGTA-TATTTTTGTATTAATTTCAACCTCAAAATTTAAAATTATTTC
130 TTTAAATGGGTATAATTTAGTACT-TTTTTGTATTAATTTCAACATCACAATTTAAAATTATTTC
* **
102106 TATTTGATCCC-T-TT
194 GATTTGATCCCATCAA
* * *
102120 TGTGTTGTTTAGTTTATTTAAATTTTTATTTGTAATTTTATATTTGTTCAATTTAGTCCTACAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
*
102185 TTTTATTTGCATTTGAAATTGACACATACTTATTACTTATTTCTATTTTTAAATTGGCCATAACT
66 TTTTATTTGCATATGAAATTGAC-CATACTTATTACTTATTTCTATTTTT-AATTGGCCATAACT
102250 TTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAATTTAAAATTATTTC
129 TTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAATTTAAAATTATTTC
102315 GATTTGATCCCATCAA
194 GATTTGATCCCATCAA
*
102331 TGTGTGTGTTTAATTAATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAA
1 TGTGT-TGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAA
* * *
102396 ATTTTATTTGCATATGAAATTGATCCAGACTTTTTACTTAATTCTATTTTTTTAATTGGCCCATA
65 ATTTTATTTGCATATGAAATTGA-CCATACTTATTACTTATTTCTA--TTTTTAATTGG-CCATA
102461 ACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAATTTAAAATTA-
126 ACTTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAATTTAAAATTAT
102525 TTCGATTTGATCCCTCATCAA
191 TTCGATTTGAT-CC-CATCAA
*
102546 TGTGTGTTGTTTAATTTATTTAAATTTTTATTTGCAATTTCATATTTGTTCAATTTA
1 --TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTA
102603 ATTCTTAATT
Statistics
Matches: 441, Mismatches: 27, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
206 1 0.00
207 103 0.23
208 17 0.04
209 65 0.15
210 2 0.00
211 5 0.01
212 95 0.22
213 18 0.04
214 76 0.17
215 6 0.01
216 48 0.11
217 5 0.01
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (209 bp):
TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
TTTTATTTGCATATGAAATTGACCATACTTATTACTTATTTCTATTTTTAATTGGCCATAACTTT
TTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACATCACAATTTAAAATTATTTCGA
TTTGATCCCATCAA
Found at i:103539 original size:17 final size:17
Alignment explanation
Indices: 103495--103540 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
103485 TATTAAAGAA
*
103495 AATATATAAATATTTTAC
1 AATATAT-AATATTATAC
* *
103513 AATTTGTAATATTATAC
1 AATATATAATATTATAC
103530 AATATATAATA
1 AATATATAATA
103541 AGGACATTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (17 bp):
AATATATAATATTATAC
Found at i:103697 original size:20 final size:20
Alignment explanation
Indices: 103661--103698 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103651 ATCCTATTCC
**
103661 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
103681 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
103699 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:104068 original size:19 final size:19
Alignment explanation
Indices: 104044--104098 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
104034 AATCTATATT
104044 TCTATATAGAATTATTAAG
1 TCTATATAGAATTATTAAG
*
104063 TCTATATAGTATTATTAAG
1 TCTATATAGAATTATTAAG
*
104082 -ATATATA-AGATTATTAA
1 TCTATATAGA-ATTATTAA
104099 TATATTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 14 0.44
19 18 0.56
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (19 bp):
TCTATATAGAATTATTAAG
Found at i:104107 original size:11 final size:11
Alignment explanation
Indices: 104091--104205 Score: 66
Period size: 11 Copynumber: 10.6 Consensus size: 11
104081 GATATATAAG
104091 ATTATTAATAT
1 ATTATTAATAT
*
104102 ATTATTAAGAAT
1 ATTATTAA-TAT
*
104114 AATATAATAATAT
1 -AT-TATTAATAT
104127 ATT-TT-AT-T
1 ATTATTAATAT
104135 ATTATATAAT-T
1 ATTAT-TAATAT
* *
104146 CTTATAATATAT
1 ATTATTA-ATAT
*
104158 ATTATTTATAT
1 ATTATTAATAT
*
104169 ATTAATT-TTAT
1 ATT-ATTAATAT
104180 A-TATTAAT-T
1 ATTATTAATAT
104189 ATTATT-ATAT
1 ATTATTAATAT
104199 ATTATTA
1 ATTATTA
104206 TTTAATTATT
Statistics
Matches: 80, Mismatches: 11, Indels: 26
0.68 0.09 0.22
Matches are distributed among these distances:
8 4 0.05
9 10 0.12
10 16 0.20
11 29 0.36
12 12 0.15
13 4 0.05
14 5 0.06
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (11 bp):
ATTATTAATAT
Found at i:104169 original size:18 final size:17
Alignment explanation
Indices: 104116--104208 Score: 57
Period size: 16 Copynumber: 6.0 Consensus size: 17
104106 TTAAGAATAA
104116 TATAATA-ATA-TATTT
1 TATAATATATATTATTT
* *
104131 TATTAT-TATATAATTCT
1 TATAATATATATTATT-T
104148 TATAATATATATTA-TT
1 TATAATATATATTATTT
104164 TAT-ATAT-TA--ATTT
1 TATAATATATATTATTT
104177 TAT-ATAT-TAATTATTAT
1 TATAATATAT-ATTATT-T
104194 TAT-ATAT-TATTATTT
1 TATAATATATATTATTT
104209 AATTATTATT
Statistics
Matches: 65, Mismatches: 4, Indels: 18
0.75 0.05 0.21
Matches are distributed among these distances:
12 1 0.02
13 10 0.15
14 3 0.05
15 13 0.20
16 16 0.25
17 16 0.25
18 6 0.09
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (17 bp):
TATAATATATATTATTT
Found at i:104189 original size:17 final size:17
Alignment explanation
Indices: 104130--104207 Score: 59
Period size: 13 Copynumber: 5.1 Consensus size: 17
104120 ATAATATATT
*
104130 TTATTAT-TATATAATTC
1 TTATTATATAT-TAATTA
*
104147 TTATAATATA-T-ATTA
1 TTATTATATATTAATTA
104162 -T-TTATATATT-A--A
1 TTATTATATATTAATTA
104174 TT-TTATATATTAATTA
1 TTATTATATATTAATTA
104190 TTATTATATATT-ATTA
1 TTATTATATATTAATTA
104206 TT
1 TT
104208 TAATTATTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
12 1 0.02
13 16 0.31
14 4 0.08
15 3 0.06
16 10 0.20
17 15 0.29
18 2 0.04
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTATATATTAATTA
Found at i:104210 original size:24 final size:24
Alignment explanation
Indices: 104131--104218 Score: 89
Period size: 24 Copynumber: 3.9 Consensus size: 24
104121 TAATATATTT
* * *
104131 TATTATTATATAATTCTTATAATA
1 TATTATTATTTAATTATTATTATA
104155 TA-TATTATTT-A-TA-TATTA-A
1 TATTATTATTTAATTATTATTATA
*
104174 TTTTA-TATATTAATTATTATTATA
1 TATTATTAT-TTAATTATTATTATA
104198 TATTATTATTTAATTATTATT
1 TATTATTATTTAATTATTATT
104219 TAAATAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
19 5 0.10
20 8 0.15
21 2 0.04
22 3 0.06
23 12 0.23
24 19 0.37
25 3 0.06
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTATTATTTAATTATTATTATA
Found at i:104215 original size:11 final size:11
Alignment explanation
Indices: 104183--104221 Score: 60
Period size: 11 Copynumber: 3.4 Consensus size: 11
104173 ATTTTATATA
104183 TTAATTATTAT
1 TTAATTATTAT
104194 TATATATTATTAT
1 T-TA-ATTATTAT
104207 TTAATTATTAT
1 TTAATTATTAT
104218 TTAA
1 TTAA
104222 ATAATATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 13 0.50
12 4 0.15
13 9 0.35
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTAATTATTAT
Found at i:108891 original size:21 final size:21
Alignment explanation
Indices: 108867--108907 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
108857 AGGAACAACC
*
108867 AGAACCAAGAGGAGTTCGAGG
1 AGAACCAAGAAGAGTTCGAGG
* *
108888 AGAACGATGAAGAGTTCGAG
1 AGAACCAAGAAGAGTTCGAG
108908 CCATGAAAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.37, T:0.12
Consensus pattern (21 bp):
AGAACCAAGAAGAGTTCGAGG
Found at i:111893 original size:27 final size:26
Alignment explanation
Indices: 111863--111920 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
111853 TGTGTATATT
111863 TTGATTTAATTAAATTAATCGATCTAA
1 TTGATTTAATTAAATTAATCGATC-AA
* * *
111890 TTGAATTAATTTAATTAATTGATCAA
1 TTGATTTAATTAAATTAATCGATCAA
111916 -TGATT
1 TTGATT
111921 ATTATAACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.15
26 2 0.07
27 21 0.78
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (26 bp):
TTGATTTAATTAAATTAATCGATCAA
Found at i:113909 original size:17 final size:17
Alignment explanation
Indices: 113887--113921 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
113877 AGTGGACGAG
113887 TCTCCCAACAAGAATTT
1 TCTCCCAACAAGAATTT
*
113904 TCTCCCAACAAGGATTT
1 TCTCCCAACAAGAATTT
113921 T
1 T
113922 ATACATACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (17 bp):
TCTCCCAACAAGAATTT
Found at i:120473 original size:16 final size:17
Alignment explanation
Indices: 120423--120474 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
120413 AAAATTATTA
120423 AATTTGAAAGTTAGAGT
1 AATTTGAAAGTTAGAGT
*
120440 GA-TT-AAA-TTAGGAGT
1 AATTTGAAAGTTA-GAGT
120455 AATTTGAAAGTTA-AGT
1 AATTTGAAAGTTAGAGT
120471 AATT
1 AATT
120475 ATATTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 3 0.10
15 8 0.28
16 11 0.38
17 4 0.14
18 3 0.10
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (17 bp):
AATTTGAAAGTTAGAGT
Found at i:122536 original size:27 final size:27
Alignment explanation
Indices: 122504--122558 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
122494 ATTTAAACTT
122504 ATTACATCAAAGTGATGAGTTTTAAAA
1 ATTACATCAAAGTGATGAGTTTTAAAA
122531 ATTACATCAAAGTGATGAGTTTTAAAA
1 ATTACATCAAAGTGATGAGTTTTAAAA
122558 A
1 A
122559 GTTATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (27 bp):
ATTACATCAAAGTGATGAGTTTTAAAA
Found at i:124914 original size:21 final size:20
Alignment explanation
Indices: 124881--124920 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
124871 ATAATTATTT
124881 AAAAAATTAAATAAAAATAC
1 AAAAAATTAAATAAAAATAC
*
124901 AAAAATATTTAATAAAAATA
1 AAAAA-ATTAAATAAAAATA
124921 ATTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAAAATTAAATAAAAATAC
Found at i:125071 original size:12 final size:15
Alignment explanation
Indices: 125038--125066 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
125028 AAATAATAAA
125038 TATAATTATAAAAAC
1 TATAATTATAAAAAC
125053 TATAATTA-AAAAAC
1 TATAATTATAAAAAC
125067 AAATTTGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (15 bp):
TATAATTATAAAAAC
Found at i:125638 original size:17 final size:18
Alignment explanation
Indices: 125616--125649 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
125606 TCAGCCGGTC
125616 CGGTTC-GAACGGTTCAA
1 CGGTTCTGAACGGTTCAA
*
125633 CGGTTCTGACCGGTTCA
1 CGGTTCTGAACGGTTCA
125650 CTAATAGCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.26
Consensus pattern (18 bp):
CGGTTCTGAACGGTTCAA
Found at i:132633 original size:18 final size:19
Alignment explanation
Indices: 132610--132646 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
132600 GGCAAGAAAC
132610 AGATTCATTCTG-AGGAAT
1 AGATTCATTCTGCAGGAAT
132628 AGATTCATTCTGCAGGAAT
1 AGATTCATTCTGCAGGAAT
132647 TGAGCAGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (19 bp):
AGATTCATTCTGCAGGAAT
Found at i:132764 original size:45 final size:45
Alignment explanation
Indices: 132672--132764 Score: 105
Period size: 45 Copynumber: 2.1 Consensus size: 45
132662 GGTGGCATTC
* * * *
132672 CCACAATTGCCCCACTACCCTCTTGCAAGGCATTATCCGAAGTCT
1 CCACAATTACCCCACTACCCTCCTGCAAGGCATTAACCGAAGCCT
* * * * *
132717 CCACAATTACCTCACTGCCCTCCTGCAAGTCTTTAACTGAAGCCT
1 CCACAATTACCCCACTACCCTCCTGCAAGGCATTAACCGAAGCCT
132762 CCA
1 CCA
132765 TAGCAGTACC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.25, C:0.39, G:0.12, T:0.25
Consensus pattern (45 bp):
CCACAATTACCCCACTACCCTCCTGCAAGGCATTAACCGAAGCCT
Done.