genome.fa.s7795.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007795.1 Hibiscus syriacus cultivar Beakdansim tig00110085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213162

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4169--4208	21	2.0	20	90	5	62	47	0	0	52	1.00
3962--4396	186	2.4	184	82	8	494	46	8	5	39	1.57
5490--5536	18	2.7	17	78	12	51	63	4	2	29	1.25
12495--12525	15	2.1	15	93	0	53	58	0	0	41	0.98
12753--12818	31	2.1	32	94	2	116	24	16	22	36	1.94
15653--15687	14	2.5	14	90	9	54	40	0	0	60	0.97
15684--15742	17	3.4	16	73	26	57	42	1	3	52	1.28
15872--15936	25	2.6	26	78	14	73	43	0	1	55	1.09
15886--15935	24	2.1	24	88	7	75	44	0	2	54	1.11
17163--17200	18	2.0	20	85	10	53	7	13	10	68	1.39
17239--17283	18	2.6	18	82	3	56	13	20	4	62	1.48
17322--17379	25	2.4	25	85	2	73	37	15	25	20	1.92
17879--17924	21	2.0	23	84	12	60	47	19	15	17	1.82
17949--17991	21	2.0	21	95	0	77	23	27	25	23	2.00
18696--18777	23	3.5	23	77	12	87	28	26	26	18	1.98
18981--19013	16	2.0	17	88	5	50	36	24	6	33	1.80
32277--32363	35	2.5	34	80	12	97	55	10	8	26	1.61
34808--34949	51	2.7	52	82	12	150	23	26	31	18	1.97
35000--35078	29	2.7	29	86	0	113	39	10	20	30	1.85
35663--35701	20	1.9	21	85	15	55	46	5	2	46	1.38
42811--42837	2	13.5	2	100	0	54	51	48	0	0	1.00
43058--43116	23	2.6	23	86	10	93	38	27	16	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43904--44358	228	2.0	229	98	0	876	31	22	13	31	1.93
44855--44911	23	2.5	23	91	0	87	21	42	12	24	1.87
48912--48938	2	13.5	2	100	0	54	51	0	48	0	1.00
59271--59295	10	2.5	10	100	0	50	28	0	0	72	0.86
66412--66469	2	29.0	2	100	0	116	50	0	0	50	1.00
69732--69805	29	2.5	31	88	8	125	32	14	36	16	1.89
69859--69930	35	2.0	38	89	8	114	55	0	0	44	0.99
71031--71078	23	2.1	23	88	0	69	50	16	12	20	1.78
72754--72879	41	3.1	41	87	3	141	35	11	21	30	1.90
72781--72879	41	2.4	41	94	1	173	34	11	23	31	1.90
76636--76743	47	2.2	49	83	8	130	55	1	1	40	1.21
76631--76715	18	5.1	18	68	18	67	56	2	1	40	1.20
76671--76751	25	3.0	29	68	17	75	56	0	2	40	1.12
79023--79061	7	5.6	7	96	0	69	15	15	43	25	1.86
81268--81349	22	3.7	22	95	0	137	36	24	17	21	1.94
81267--81370	44	2.4	43	83	4	136	38	23	14	24	1.92
88329--88367	13	2.9	13	92	3	60	23	12	0	64	1.28
88378--88503	36	3.6	36	94	4	213	34	17	10	37	1.84
89307--89385	34	2.3	34	95	0	140	50	7	15	26	1.70
100486--100577	30	3.1	30	96	0	166	18	27	36	17	1.93
102498--102757	136	1.9	136	83	3	335	41	16	15	26	1.88
120190--120308	24	5.0	24	79	4	132	27	15	17	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120190--120308	48	2.5	48	86	2	159	27	15	17	39	1.90
129800--129862	24	2.6	24	76	0	72	31	4	39	23	1.76
130614--130654	16	2.7	15	92	7	66	48	12	21	17	1.79
132891--132991	51	2.0	51	92	3	168	34	10	20	33	1.88
134747--134793	16	3.1	15	85	11	69	55	12	19	12	1.69
137650--137694	23	2.0	22	87	8	65	57	0	0	42	0.98
139306--139373	24	2.9	23	80	4	82	30	14	11	42	1.82
139317--139373	23	2.4	24	82	2	80	31	15	12	40	1.85
139538--139634	47	2.1	47	90	3	151	51	9	17	21	1.73
144431--144697	134	2.0	134	100	0	534	10	26	21	41	1.85
145227--145265	18	2.2	18	86	9	53	61	0	15	23	1.33
145227--145278	28	1.9	27	84	7	70	65	0	13	21	1.26
145344--145540	71	2.9	67	74	16	172	44	7	4	43	1.52
145482--145568	35	2.4	35	83	14	99	43	5	5	44	1.51
145507--145579	37	1.9	37	86	10	103	42	5	6	45	1.54
145482--145602	39	3.3	36	78	12	104	43	5	4	45	1.49
146252--147011	84	9.2	82	79	6	768	23	20	25	30	1.99
146249--147011	165	4.6	165	87	1	1089	23	20	25	30	1.99
147405--147475	36	2.0	36	97	2	135	46	8	22	22	1.78
150358--150402	19	2.4	19	92	3	74	66	8	13	11	1.44
153512--153549	18	2.2	17	86	13	51	60	0	15	23	1.35
153512--153562	27	1.9	26	88	4	75	64	0	13	21	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153582--153720	33	4.2	32	73	21	85	45	8	3	42	1.52
153769--153851	35	2.3	35	84	14	98	43	6	6	44	1.53
153656--153858	110	1.8	110	80	12	247	41	6	5	45	1.54
153769--153885	39	3.1	36	78	11	103	43	5	5	45	1.50
172609--172657	21	2.3	22	80	20	59	32	28	14	24	1.94
175327--175355	2	14.5	2	100	0	58	51	0	0	48	1.00
175962--176050	46	1.9	46	86	4	126	34	15	20	29	1.93
177377--177674	142	2.1	142	82	6	350	35	9	18	35	1.84
177993--178063	21	3.4	21	72	16	76	21	22	22	33	1.97
177976--178084	42	2.6	42	95	1	193	22	21	26	30	1.98
178055--178228	21	8.4	21	68	17	105	21	20	27	30	1.98
178014--178146	62	2.1	62	92	0	221	21	20	28	30	1.98
178076--178251	41	4.3	41	92	0	289	22	20	25	32	1.98
177976--178187	103	2.0	104	90	0	336	22	20	25	30	1.98
178014--178249	62	3.8	62	73	15	177	21	20	25	31	1.98
179018--179055	5	7.4	5	96	3	67	0	21	57	21	1.40
179137--179210	21	3.5	21	71	14	80	28	31	20	20	1.97
179201--179274	22	3.5	22	92	3	125	41	16	20	21	1.90
179159--179374	85	2.6	84	85	9	273	35	23	19	21	1.96
179266--179336	21	3.5	20	70	18	65	32	30	18	18	1.95
179139--179374	42	5.6	41	83	11	309	34	24	19	21	1.96
179266--179374	21	5.2	20	67	18	62	33	27	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181661--181724	29	2.1	31	88	5	96	57	15	4	21	1.56
186195--186224	13	2.3	13	94	0	51	16	43	23	16	1.87
186173--186218	18	2.6	18	96	0	83	17	50	21	10	1.77
188660--188750	47	1.9	47	82	10	114	20	15	15	48	1.81
188657--188752	24	4.0	24	77	12	92	21	14	15	47	1.81
194202--194237	14	2.6	14	90	0	63	52	16	16	13	1.74
196339--196709	180	2.1	180	97	1	708	29	12	20	38	1.88
197707--197756	25	2.0	25	84	0	64	22	24	24	30	1.99
201372--201470	3	33.7	3	87	4	148	61	0	3	35	1.11
201782--202383	108	5.6	107	84	9	734	29	18	14	37	1.90
201812--202383	316	1.8	315	89	6	897	28	19	14	37	1.90
202993--203422	84	5.1	84	92	1	691	36	21	13	28	1.91
204164--204203	16	2.5	16	88	8	55	52	10	7	30	1.62

Tables:   1

The End!