genome.fa.s7796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007796.1 Hibiscus syriacus cultivar Beakdansim tig00110101_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101895

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541--635	31	3.1	31	69	10	77	45	4	3	47	1.38
1344--1800	226	2.0	225	87	0	662	39	14	14	31	1.86
1658--1870	108	2.0	108	89	1	329	38	11	14	35	1.82
2580--2613	17	1.9	18	88	5	52	32	0	0	67	0.91
4524--4563	18	2.2	18	95	0	71	7	15	12	65	1.47
5405--5451	17	2.7	17	83	9	51	68	0	2	29	1.02
5436--5504	21	3.1	21	78	15	68	75	4	4	15	1.12
5595--5646	23	2.3	23	79	0	59	61	5	13	19	1.52
6763--6801	13	2.9	14	85	14	55	74	0	0	25	0.82
6768--6801	15	2.3	15	90	10	52	73	0	0	26	0.83
6826--6858	2	17.0	2	93	6	59	48	0	0	51	1.00
6852--6900	24	2.0	24	84	8	62	46	6	4	42	1.47
6842--7070	37	6.4	36	79	11	213	43	5	3	47	1.44
7035--7132	52	1.9	53	93	6	175	41	2	2	54	1.23
7633--7885	83	3.0	83	80	4	256	27	18	18	35	1.95
9053--9251	99	2.0	99	90	0	308	30	18	17	33	1.94
14486--14566	42	1.9	42	87	5	119	46	4	1	46	1.32
14544--14657	40	3.1	38	80	15	141	42	5	4	48	1.45
14630--14684	27	2.0	27	89	0	83	32	3	7	56	1.44
14699--14779	36	2.2	36	80	10	94	44	8	2	44	1.48
14773--14853	37	2.2	38	82	8	105	41	4	1	51	1.31
14839--14916	2	39.0	2	94	5	140	48	1	0	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16136--16256	60	2.0	60	91	0	197	46	15	3	34	1.63
16545--16604	3	19.7	3	82	3	75	35	0	0	65	0.93
16618--16706	33	2.7	33	82	0	97	49	23	1	25	1.57
17874--18019	21	7.0	21	75	16	133	20	20	23	35	1.96
17880--18019	42	3.3	42	95	0	253	20	20	23	35	1.96
18111--18150	5	7.2	6	83	11	50	37	47	15	0	1.45
18111--18157	11	4.3	11	86	8	60	38	46	12	2	1.54
18765--18826	21	3.0	21	71	13	56	35	19	20	24	1.96
18841--18970	21	6.2	21	82	8	158	23	21	24	30	1.99
18810--18933	62	2.0	62	86	9	173	27	20	21	29	1.98
22140--22178	2	19.5	2	100	0	78	0	48	0	51	1.00
28249--28278	14	2.1	14	93	0	51	50	3	23	23	1.64
34582--34641	29	2.0	31	90	6	97	35	6	16	41	1.75
34706--34772	19	3.5	19	89	4	91	41	10	13	34	1.79
34879--34921	22	2.0	22	90	4	70	23	20	30	25	1.99
34950--34989	20	1.9	21	85	10	55	37	37	10	15	1.80
39124--39165	21	2.0	21	90	0	66	26	28	23	21	1.99
39725--39759	18	1.9	18	100	0	70	25	34	22	17	1.96
44481--44561	24	3.4	24	75	10	67	35	19	13	30	1.91
47549--47581	16	2.1	16	88	5	50	36	9	24	30	1.86
49569--49641	23	3.2	23	88	0	110	39	20	4	35	1.72
49658--49700	22	2.0	21	86	8	61	39	11	6	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49703--50017	157	2.0	158	94	5	561	39	6	6	47	1.55
50198--50270	23	3.2	23	92	0	119	38	21	5	34	1.77
49230--50492	632	2.0	631	92	5	2097	39	9	7	43	1.66
50609--50673	25	2.6	25	95	0	112	38	13	9	38	1.77
53215--53539	160	2.0	164	93	4	563	35	17	13	34	1.89
53098--53994	340	2.6	340	89	7	1282	33	16	14	35	1.90
53384--53994	179	3.4	181	90	7	957	32	17	14	35	1.90
55219--55251	3	11.0	3	93	0	57	30	33	3	33	1.73
55220--55257	9	4.3	9	93	3	51	26	34	5	34	1.79
56745--58124	200	6.9	200	96	0	2415	31	17	14	36	1.91
58229--58289	19	3.3	18	88	2	59	52	11	1	34	1.47
58241--58289	19	2.6	19	96	0	89	55	10	2	32	1.45
60069--60134	33	2.0	33	90	0	105	22	48	0	28	1.51
60168--60211	21	2.1	21	91	0	70	15	31	11	40	1.83
62613--62658	20	2.3	19	89	10	74	17	15	10	56	1.67
62399--62874	181	2.6	182	89	1	695	27	16	13	42	1.86
64367--64402	15	2.4	15	100	0	72	19	38	13	27	1.90
70541--70630	20	4.4	20	78	9	92	31	25	14	28	1.95
70541--70638	41	2.4	41	76	8	103	30	24	14	30	1.94
70456--70659	102	2.0	101	84	8	263	29	26	13	30	1.94
70849--70886	16	2.5	15	84	12	51	28	5	0	65	1.14
74130--74178	20	2.5	20	89	0	71	44	22	16	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74276--74311	16	2.2	16	95	0	63	69	11	0	19	1.18
75687--75740	21	2.6	21	90	0	81	22	20	35	22	1.96
81107--81186	21	3.8	21	77	11	83	18	25	33	22	1.97
81129--81188	23	2.9	20	85	9	77	20	26	31	21	1.98
84997--85039	20	2.2	20	83	8	52	37	4	2	55	1.33
88045--88137	20	4.6	20	72	4	87	24	15	19	40	1.90
88045--88169	41	3.1	42	80	10	143	24	12	20	41	1.88
88113--88190	41	1.9	40	84	2	102	28	10	20	41	1.85
88710--88739	13	2.3	13	94	0	51	10	0	10	80	0.92
91650--91707	25	2.3	25	100	0	116	36	0	0	63	0.94
92179--92224	16	2.8	17	73	6	58	43	0	0	56	0.99

Tables:   1

The End!