Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007799.1 Hibiscus syriacus cultivar Beakdansim tig00110109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1433344
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 6
Found at i:3551 original size:6 final size:6
Alignment explanation
Indices: 3537--3570 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
3527 GGACGGTTAA
*
3537 GATTCC GATTTC GATTCC GATTCC GATTTCC GAT
1 GATTCC GATTCC GATTCC GATTCC GA-TTCC GAT
3571 CTTAATCGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (6 bp):
GATTCC
Found at i:6484 original size:14 final size:15
Alignment explanation
Indices: 6457--6487 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
6447 GAATATATTA
6457 ATATTTTAAAATAAT
1 ATATTTTAAAATAAT
6472 ATATTTT-AAATAAT
1 ATATTTTAAAATAAT
6486 AT
1 AT
6488 TTATAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATTTTAAAATAAT
Found at i:7396 original size:2 final size:2
Alignment explanation
Indices: 7389--7442 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
7379 AACAATACAA
7389 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7431 AT AT AT AT AT AT
1 AT AT AT AT AT AT
7443 TGTATATGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9276 original size:46 final size:46
Alignment explanation
Indices: 9226--9389 Score: 285
Period size: 46 Copynumber: 3.6 Consensus size: 46
9216 TCCATTTATA
* *
9226 CATTTTAATTATGACATCCTTTCATGTCTTAATTCATCCTTTCATG
1 CATTTTAATTATGACATCCTTTCATGCCTTAATGCATCCTTTCATG
9272 CATTTTAATTATGACATCCTTTCATGCCTTAATGCATCCTTTCATG
1 CATTTTAATTATGACATCCTTTCATGCCTTAATGCATCCTTTCATG
*
9318 CATTTTAATTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATG
1 CATTTTAATTATGACATCCTTTCATGCCTTAATGCATCCTTTCATG
*
9364 CATTTTAATTATGGCATCC-TTCATGC
1 CATTTTAATTATGACATCCTTTCATGC
9390 ATTTTACATA
Statistics
Matches: 115, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
45 7 0.06
46 108 0.94
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (46 bp):
CATTTTAATTATGACATCCTTTCATGCCTTAATGCATCCTTTCATG
Found at i:9296 original size:26 final size:25
Alignment explanation
Indices: 9226--9395 Score: 165
Period size: 20 Copynumber: 7.3 Consensus size: 25
9216 TCCATTTATA
9226 CATTTTAATTATGACATCCTTTCATG
1 CATTTTAATTATG-CATCCTTTCATG
*
9252 --TCTTAA-T-T-CATCCTTTCATG
1 CATTTTAATTATGCATCCTTTCATG
9272 CATTTTAATTATGACATCCTTTCATG
1 CATTTTAATTATG-CATCCTTTCATG
*
9298 C--CTT-A--ATGCATCCTTTCATG
1 CATTTTAATTATGCATCCTTTCATG
9318 CATTTTAATTATGGCATCCTTTCATG
1 CATTTTAATTAT-GCATCCTTTCATG
*
9344 C--CTT-A--ATGCATCCTTTCATG
1 CATTTTAATTATGCATCCTTTCATG
9364 CATTTTAATTATGGCATCC-TTCATG
1 CATTTTAATTAT-GCATCCTTTCATG
9389 CATTTTA
1 CATTTTA
9396 CATATTCTAA
Statistics
Matches: 120, Mismatches: 6, Indels: 37
0.74 0.04 0.23
Matches are distributed among these distances:
20 39 0.32
21 5 0.04
22 10 0.08
23 6 0.05
24 10 0.08
25 17 0.14
26 33 0.28
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.45
Consensus pattern (25 bp):
CATTTTAATTATGCATCCTTTCATG
Found at i:9901 original size:20 final size:19
Alignment explanation
Indices: 9876--9925 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 19
9866 TGAAATAAGA
9876 AAAATAAAATAAATAAAAT-G
1 AAAATAAAAT-AAT-AAATGG
9896 AAAATAATAATAATAAATGG
1 AAAATAA-AATAATAAATGG
9916 AAAATAAAAT
1 AAAATAAAAT
9926 GCTAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.25
20 18 0.64
21 3 0.11
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (19 bp):
AAAATAAAATAATAAATGG
Found at i:9997 original size:38 final size:38
Alignment explanation
Indices: 9949--10068 Score: 125
Period size: 38 Copynumber: 3.1 Consensus size: 38
9939 TGTATATATT
* **
9949 AAAAAAACGTTTTTAAAAACTATATGCTATATGTTTTC
1 AAAAAAACGTTTTAAAAAACTATATAATATATGTTTTC
* * *
9987 AAAAATACGTTTTCAAAAACTATATTATATATACGTTTTC
1 AAAAAAACGTTTTAAAAAACTATA-TA-ATATATGTTTTC
* * *
10027 AAAAAGAA-ATTTTAAAAAACTACATATTATATGTTTTC
1 AAAAA-AACGTTTTAAAAAACTATATAATATATGTTTTC
10065 AAAA
1 AAAA
10069 TGTGTTCTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 36 0.53
39 3 0.04
40 28 0.41
41 1 0.01
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.38
Consensus pattern (38 bp):
AAAAAAACGTTTTAAAAAACTATATAATATATGTTTTC
Found at i:10080 original size:38 final size:39
Alignment explanation
Indices: 9976--10094 Score: 102
Period size: 38 Copynumber: 3.0 Consensus size: 39
9966 AACTATATGC
* *
9976 TATATGTTTTCAAAAAT-ACGTTTTCAAAAACTATATTATA
1 TATATGTTTTC-AAAATGA-GTTTTAAAAAACTACATTATA
* * *
10016 TATACGTTTTCAAAAAGAAATTTTAAAAAACTACA-TAT-
1 TATATGTTTTCAAAATG-AGTTTTAAAAAACTACATTATA
* *
10054 TATATGTTTTCAAAATGTGTTCTTAAAATTA-TACATTATA
1 TATATGTTTTCAAAATGAGTT-TTAAAA-AACTACATTATA
10094 T
1 T
10095 GTCTTCCAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
37 2 0.03
38 25 0.40
39 11 0.17
40 24 0.38
41 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (39 bp):
TATATGTTTTCAAAATGAGTTTTAAAAAACTACATTATA
Found at i:10203 original size:37 final size:37
Alignment explanation
Indices: 10146--10218 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 37
10136 TTTTAAAATA
*
10146 TGTTTTCAAAACTATATATATAC-GTTTTCAAAAACG
1 TGTTTTCAAAACCATATATATACAGTTTTCAAAAACG
*
10182 TGTTTTCAAAACCATATTATATACATTTTTCAAAAAC
1 TGTTTTCAAAACCATA-TATATACAGTTTTCAAAAAC
10219 CGATTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 15 0.45
37 7 0.21
38 11 0.33
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (37 bp):
TGTTTTCAAAACCATATATATACAGTTTTCAAAAACG
Found at i:14145 original size:19 final size:19
Alignment explanation
Indices: 14105--14176 Score: 126
Period size: 19 Copynumber: 3.7 Consensus size: 19
14095 GGCTGCTGGA
*
14105 AACCGGTTTAACCGGTTTTC
1 AACCGGTTTGACCGG-TTTC
14125 AACCGGTTTGACCGGTTTC
1 AACCGGTTTGACCGGTTTC
14144 AACCGGTTTGACCGGTTTC
1 AACCGGTTTGACCGGTTTC
14163 AACCGGTTTGACCG
1 AACCGGTTTGACCG
14177 ATCTGACCCG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
19 37 0.73
20 14 0.27
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (19 bp):
AACCGGTTTGACCGGTTTC
Found at i:14150 original size:10 final size:9
Alignment explanation
Indices: 14105--14176 Score: 81
Period size: 9 Copynumber: 7.6 Consensus size: 9
14095 GGCTGCTGGA
14105 AACCGGTTT
1 AACCGGTTT
14114 AACCGGTTTT
1 AACCGG-TTT
14124 CAACCGGTTT
1 -AACCGGTTT
*
14134 GACCGGTTT
1 AACCGGTTT
14143 CAACCGGTTT
1 -AACCGGTTT
*
14153 GACCGGTTT
1 AACCGGTTT
14162 CAACCGGTTT
1 -AACCGGTTT
*
14172 GACCG
1 AACCG
14177 ATCTGACCCG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
9 26 0.48
10 22 0.41
11 6 0.11
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (9 bp):
AACCGGTTT
Found at i:14202 original size:17 final size:17
Alignment explanation
Indices: 14180--14218 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
14170 TTGACCGATC
14180 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
14197 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
14214 TGACC
1 TGACC
14219 GTTGACTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.18, C:0.46, G:0.23, T:0.13
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:21417 original size:10 final size:9
Alignment explanation
Indices: 21402--21491 Score: 63
Period size: 10 Copynumber: 9.3 Consensus size: 9
21392 GCTGCTGGAA
21402 ACCGGTTATG
1 ACCGGTT-TG
*
21412 ACCGGTTTTCA
1 ACCGG-TTT-G
*
21423 ACCGGTTCG
1 ACCGGTTTG
21432 AACCGGTTTG
1 -ACCGGTTTG
*
21442 ACCGGTCTG
1 ACCGGTTTG
21451 AACCGGTTTG
1 -ACCGGTTTG
*
21461 ACCGGTCTG
1 ACCGGTTTG
* *
21470 AATCAGTTTG
1 -ACCGGTTTG
*
21480 ACCGGTCTG
1 ACCGGTTTG
21489 ACC
1 ACC
21492 CGACCCGACC
Statistics
Matches: 62, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
9 25 0.40
10 30 0.48
11 7 0.11
ACGTcount: A:0.18, C:0.27, G:0.28, T:0.28
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:21447 original size:19 final size:19
Alignment explanation
Indices: 21431--21489 Score: 100
Period size: 19 Copynumber: 3.1 Consensus size: 19
21421 CAACCGGTTC
21431 GAACCGGTTTGACCGGTCT
1 GAACCGGTTTGACCGGTCT
21450 GAACCGGTTTGACCGGTCT
1 GAACCGGTTTGACCGGTCT
* *
21469 GAATCAGTTTGACCGGTCT
1 GAACCGGTTTGACCGGTCT
21488 GA
1 GA
21490 CCCGACCCGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.27
Consensus pattern (19 bp):
GAACCGGTTTGACCGGTCT
Found at i:21514 original size:22 final size:22
Alignment explanation
Indices: 21488--21530 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
21478 TGACCGGTCT
21488 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
*
21510 GACCCGACCCGACTGTTGACC
1 GACCCGACCCGACCGTTGACC
21531 GTTGACCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.47, G:0.23, T:0.12
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:23381 original size:59 final size:59
Alignment explanation
Indices: 23254--23386 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
23244 AAAGTATACC
* * * *
23254 ATCATTTTAAATTGATCCTTAAACTTTTAAATATTCTAATTTCATCCCCAAACTATGAAT
1 ATCATTCTAAATTG-TCCTTAAACTTTTAAATATTCTAATTACATACCCAAAATATGAAT
*
23314 ATCATTCTAAATTAGTCCTTAAACTTTTGAACAT-TTC-AATTACA-ACCCAAAATATGACCT
1 ATCATTCTAAATT-GTCCTTAAACTTTT-AA-ATATTCTAATTACATACCCAAAATATGA-AT
23374 -TCATTCTAAATTG
1 ATCATTCTAAATTG
23387 GTCCCCAAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
58 1 0.02
59 23 0.36
60 32 0.50
61 6 0.09
62 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.39
Consensus pattern (59 bp):
ATCATTCTAAATTGTCCTTAAACTTTTAAATATTCTAATTACATACCCAAAATATGAAT
Found at i:32941 original size:4 final size:4
Alignment explanation
Indices: 32932--32966 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
32922 ATATCTTCGG
32932 TATT TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TATT TAT
32967 ACGTCTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:36146 original size:20 final size:20
Alignment explanation
Indices: 36121--36161 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36111 ATTCATATCT
36121 TATATAAATACAAATAATTA
1 TATATAAATACAAATAATTA
* * *
36141 TATATATATATATATAATTA
1 TATATAAATACAAATAATTA
36161 T
1 T
36162 TAATTTGAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TATATAAATACAAATAATTA
Found at i:44300 original size:8 final size:8
Alignment explanation
Indices: 44287--44327 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
44277 CTCATTTTCA
44287 GAGAATTT
1 GAGAATTT
44295 GAGAATTT
1 GAGAATTT
*
44303 -AGAGTTT
1 GAGAATTT
*
44310 GGGAATTT
1 GAGAATTT
44318 GAGAATTT
1 GAGAATTT
44326 GA
1 GA
44328 AAGTTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:44319 original size:23 final size:24
Alignment explanation
Indices: 44289--44334 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
44279 CATTTTCAGA
*
44289 GAATTTGAGAATTT-AGAGTTTGG
1 GAATTTGAGAATTTGAAAGTTTGG
44312 GAATTTGAGAATTTGAAAGTTTG
1 GAATTTGAGAATTTGAAAGTTTG
44335 TGAACTGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.39
Consensus pattern (24 bp):
GAATTTGAGAATTTGAAAGTTTGG
Found at i:44613 original size:128 final size:128
Alignment explanation
Indices: 44398--45150 Score: 1295
Period size: 128 Copynumber: 5.9 Consensus size: 128
44388 TAATCGGAGT
*
44398 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTA--TT-TAAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
44460 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
44523 ACTATTCACATGAAGGCGCGCTCCCGGGGGCGCGCCTTCCACTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
44588 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
44651 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
*
44716 CATTGCCCTATTATGTCACTCATATCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
44779 ACTATTCACATGAAGGCGCGTTCCCGGGGG-GCACCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
*
44843 CATTGCCCTATTATGTCACTCATGTCCCCCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
44906 ACTATTCACTTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* *
44971 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACATTA-TTCATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGAT-ATATCAGTACCTATTATTTC
* *** *
45034 TC-AGGGGAC-TAGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTT
1 ACTA-TTCACAT-GAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTT
45097 ATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
64 ATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
45151 AATCAGGTAA
Statistics
Matches: 599, Mismatches: 21, Indels: 13
0.95 0.03 0.02
Matches are distributed among these distances:
125 42 0.07
127 128 0.21
128 428 0.71
129 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (128 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:44922 original size:255 final size:256
Alignment explanation
Indices: 44398--45150 Score: 1295
Period size: 255 Copynumber: 3.0 Consensus size: 256
44388 TAATCGGAGT
*
44398 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTA--TT-TAAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
44460 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
* *
44525 TATTCACATGAAGGCGCGCTCCCGGGGGCGCGCCTTCCACTATTTTGTCAGAGAATATGTTATCA
131 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCA
44590 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
196 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
44651 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
*
44716 CATTGCCCTATTATGTCACTCATATCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
*
44781 TATTCACATGAAGGCGCGTTCCCGGGGG-GCACCTTCCATTATTTTGTCAGAGAATATGTTATCA
131 TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCA
*
44845 TTGCCCTATTATGTCACTCATGTCCCCCGGGGACACTAGATATATCAGTACCTATTATTTC
196 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
44906 ACTATTCACTTGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* * *
44971 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACATTA-TTCATATCAGTACCTATTATTTCT
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGAT-ATATCAGTACCTATTATTTCA
*** *
45035 C-AGGGGAC-TAGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTA
130 CTA-TTCACAT-GAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTA
45098 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
193 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
45151 AATCAGGTAA
Statistics
Matches: 475, Mismatches: 18, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
253 44 0.09
254 3 0.01
255 239 0.50
256 189 0.40
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (256 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTCAC
TATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCA
TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:45589 original size:34 final size:34
Alignment explanation
Indices: 45551--45651 Score: 148
Period size: 34 Copynumber: 3.0 Consensus size: 34
45541 AAATTTAATG
*
45551 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
45585 TTAAATTTCGAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
45619 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
45652 AACATTTATC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:46201 original size:21 final size:21
Alignment explanation
Indices: 46171--46264 Score: 145
Period size: 21 Copynumber: 4.5 Consensus size: 21
46161 TATGGTATAA
*
46171 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
46192 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
46213 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
*
46234 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
46255 AACCCTGCGG
1 AACCCTGCGG
46265 AGATGGCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 3 0.04
21 63 0.91
22 3 0.04
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:46294 original size:21 final size:21
Alignment explanation
Indices: 46268--46315 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
46258 CCTGCGGAGA
*
46268 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
46289 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
46310 GGGCAT
1 TGGCAT
46316 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.40, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:48083 original size:31 final size:33
Alignment explanation
Indices: 48041--48115 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 33
48031 ATAATTCTAA
* * *
48041 ATAAATAATAATTATATAAAT-ATTATTTTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
* *
48073 A-AAAAAATAA-TATTTACATAAATATATTAAT
1 ATAAAAAATAATTATATAAATAAATATATTAAT
48104 ATAAAAAATAAT
1 ATAAAAAATAAT
48116 AACTATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 7 0.20
31 18 0.51
32 10 0.29
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
ATAAAAAATAATTATATAAATAAATATATTAAT
Found at i:48083 original size:34 final size:31
Alignment explanation
Indices: 48038--48126 Score: 97
Period size: 34 Copynumber: 2.7 Consensus size: 31
48028 TTAATAATTC
*
48038 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTATATAAATA-TA--TTAA
* *
48072 TAAAAAAATAATATTTACATAAATATATTAA
1 TAAAAAAATAATAATTATATAAATATATTAA
* *
48103 TATAAAAAATAATAACTATTTAAA
1 TA-AAAAAATAATAATTATATAAA
48127 AAAATACTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 6 0.13
32 17 0.36
33 2 0.04
34 22 0.47
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (31 bp):
TAAAAAAATAATAATTATATAAATATATTAA
Found at i:49285 original size:63 final size:63
Alignment explanation
Indices: 49199--49322 Score: 203
Period size: 63 Copynumber: 2.0 Consensus size: 63
49189 AATACGATAC
* * *
49199 ATCGAGCTGTTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGT
1 ATCGAGCTGTTAATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTAGT
* *
49262 ATCGAGTTGTTTATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTA
1 ATCGAGCTGTTAATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTA
49323 TCTATTGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (63 bp):
ATCGAGCTGTTAATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTAGT
Found at i:49801 original size:63 final size:63
Alignment explanation
Indices: 49715--49838 Score: 203
Period size: 63 Copynumber: 2.0 Consensus size: 63
49705 AATACGATAC
* * *
49715 ATCGAGCTGTTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGT
1 ATCGAGCTGTTAATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTAGT
* *
49778 ATCGAGTTGTTTATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTA
1 ATCGAGCTGTTAATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTA
49839 TCTATTGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (63 bp):
ATCGAGCTGTTAATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTAGT
Found at i:49921 original size:516 final size:517
Alignment explanation
Indices: 48948--49981 Score: 2061
Period size: 516 Copynumber: 2.0 Consensus size: 517
48938 TAATTGAAAA
48948 AAATAATATATAGAGGGGTATTGTTGTAATTATTTTTGAATATATAAGGTAAAATTATATTTTTT
1 AAATAATATATAGAGGGGTATTGTTGTAATTATTTTTGAATATATAAGGTAAAATTATATTTTTT
49013 GGTCGAATATTTTTCACCCTAAAACCGAAACCGACCCGAACCTGGAATTTTTTTTTTTAAAAAAA
66 GGTCGAATATTTTTCACCCTAAAACCGAAACCGACCCGAACCTGGAATTTTTTTTTTTAAAAAAA
49078 TCCTGCCCAATTGGATTGGGTCGAAACACGTCTGATTCGAGTCTCATGTCCATCCCTAATCATAT
131 TCCTGCCCAATTGGATTGGGTCGAAACACGTCTGATTCGAGTCTCATGTCCATCCCTAATCATAT
49143 ACTTTTTTTATCAACTTTACCTTTTCTTTTCCTTTATGGTAAATATAATACGATACATCGAGCTG
196 ACTTTTTTTATCAACTTTACCTTTTCTTTTCCTTTATGGTAAATATAATACGATACATCGAGCTG
49208 TTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGTATCGAGTTGTT
261 TTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGTATCGAGTTGTT
49273 TATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTATCTATTGAAAATATT
326 TATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTATCTATTGAAAATATT
49338 TGACAGAGTAGTCGACATTTCATCATTTGATTGAATGATTAAATTAAAATTAATATCAAATTTAT
391 TGACAGAGTAGTCGACATTTCATCATTTGATTGAATGATTAAATTAAAATTAATATCAAATTTAT
49403 ATAATATTTAAATAATGGTGATCAAGTGTATACTTTATAATTATATCAAATTTGTTAACTGT
456 ATAATATTTAAATAATGGTGATCAAGTGTATACTTTATAATTATATCAAATTTGTTAACTGT
49465 AAATAATATATAGAGGGGTATTGTTGTAATTATTTTTGAATATATAAGGTAAAATTATATTTTTT
1 AAATAATATATAGAGGGGTATTGTTGTAATTATTTTTGAATATATAAGGTAAAATTATATTTTTT
49530 GGTCGAATATTTTTCACCCTAAAACCGAAACCGACCCGAACCTGGAA-TTTTTTTTTTAAAAAAA
66 GGTCGAATATTTTTCACCCTAAAACCGAAACCGACCCGAACCTGGAATTTTTTTTTTTAAAAAAA
49594 TCCTGCCCAATTGGATTGGGTCGAAACACGTCTGATTCGAGTCTCATGTCCATCCCTAATCATAT
131 TCCTGCCCAATTGGATTGGGTCGAAACACGTCTGATTCGAGTCTCATGTCCATCCCTAATCATAT
49659 ACTTTTTTTATCAACTTTACCTTTTCTTTTCCTTTATGGTAAATATAATACGATACATCGAGCTG
196 ACTTTTTTTATCAACTTTACCTTTTCTTTTCCTTTATGGTAAATATAATACGATACATCGAGCTG
49724 TTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGTATCGAGTTGTT
261 TTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGTATCGAGTTGTT
49789 TATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTATCTATTGAAAATATT
326 TATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTATCTATTGAAAATATT
49854 TGACAGAGTAGTCGACATTTCATCATTTGATTGAATGATTAAATTAAAATTAATATCAAATTTAT
391 TGACAGAGTAGTCGACATTTCATCATTTGATTGAATGATTAAATTAAAATTAATATCAAATTTAT
49919 ATAATATTTAAATAATGGTGATCAAGTGTATACTTTATAATTATATCAAATTTGTTAACTGT
456 ATAATATTTAAATAATGGTGATCAAGTGTATACTTTATAATTATATCAAATTTGTTAACTGT
49981 A
1 A
49982 GTGTCAGTCC
Statistics
Matches: 517, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
516 405 0.78
517 112 0.22
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (517 bp):
AAATAATATATAGAGGGGTATTGTTGTAATTATTTTTGAATATATAAGGTAAAATTATATTTTTT
GGTCGAATATTTTTCACCCTAAAACCGAAACCGACCCGAACCTGGAATTTTTTTTTTTAAAAAAA
TCCTGCCCAATTGGATTGGGTCGAAACACGTCTGATTCGAGTCTCATGTCCATCCCTAATCATAT
ACTTTTTTTATCAACTTTACCTTTTCTTTTCCTTTATGGTAAATATAATACGATACATCGAGCTG
TTAATTTTATCAATTATATCTTTTAATTGTTTAAATAAGATCGATTAATTTAGTATCGAGTTGTT
TATTTTACCAATTAGATCTTTTAATTGTCTAAATAAGATCGATTAATTTATCTATTGAAAATATT
TGACAGAGTAGTCGACATTTCATCATTTGATTGAATGATTAAATTAAAATTAATATCAAATTTAT
ATAATATTTAAATAATGGTGATCAAGTGTATACTTTATAATTATATCAAATTTGTTAACTGT
Found at i:53230 original size:18 final size:18
Alignment explanation
Indices: 53207--53244 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
53197 GATCAGATTG
53207 CACAAGTTTCATGTTAAC
1 CACAAGTTTCATGTTAAC
53225 CACAAGTTTCATGTTAAC
1 CACAAGTTTCATGTTAAC
53243 CA
1 CA
53245 TATTGATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (18 bp):
CACAAGTTTCATGTTAAC
Found at i:53568 original size:32 final size:31
Alignment explanation
Indices: 53492--53568 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
53482 CTAATGTGAC
* *
53492 TCTTAGGTAGGCTCTGCGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTGCGGCCCTAAGATCAT
* **
53523 TCTCAGGTAGGCCCTGCGGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCTGCGGCCCTAAGAT-CAT
53555 TCTTAGGTAGGCCC
1 TCTTAGGTAGGCCC
53569 CGTGGCCCCG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 25 0.64
32 14 0.36
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTGCGGCCCTAAGATCAT
Found at i:54813 original size:16 final size:16
Alignment explanation
Indices: 54794--54840 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
54784 AAGTTGAATT
54794 ATTTTAAATTTAAGTA
1 ATTTTAAATTTAAGTA
* *
54810 ATTTTATATTATAATTA
1 ATTTTAAATT-TAAGTA
*
54827 A-TTTAAATTAAAGT
1 ATTTTAAATTTAAGT
54841 TTTTCTTCTC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 3 0.12
16 16 0.64
17 6 0.24
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (16 bp):
ATTTTAAATTTAAGTA
Found at i:54830 original size:17 final size:16
Alignment explanation
Indices: 54780--54835 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
54770 GATTCGAAAT
* *
54780 TTTTAAGTTGAATT-A
1 TTTTAAATTTAATTAA
*
54795 TTTTAAATTTAAGTAA
1 TTTTAAATTTAATTAA
*
54811 TTTTATATTATAATTAA
1 TTTTAAATT-TAATTAA
54828 -TTTAAATT
1 TTTTAAATT
54836 AAAGTTTTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.33
16 16 0.48
17 6 0.18
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
TTTTAAATTTAATTAA
Found at i:55261 original size:37 final size:36
Alignment explanation
Indices: 55220--55330 Score: 92
Period size: 37 Copynumber: 3.2 Consensus size: 36
55210 GTTACTCGAT
55220 TATTATTTAGGGTAAATTACCTATTTGGTCACTTATA
1 TATTATTTAGGGTAAATTACCTATTTGGTCA-TTATA
* ** *
55257 TATTA--TA---TAATTTATGT-TTTGATCATTCGAT-
1 TATTATTTAGGGTAAATTACCTATTTGGTCATT--ATA
*
55288 TATTATTTAGGGTAAACTACCTATTTGGTCAATTATA
1 TATTATTTAGGGTAAATTACCTATTTGGTC-ATTATA
55325 TATTAT
1 TATTAT
55331 CTAATATAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
30 2 0.04
31 12 0.22
32 9 0.16
33 2 0.04
35 2 0.04
36 8 0.15
37 17 0.31
38 3 0.05
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.49
Consensus pattern (36 bp):
TATTATTTAGGGTAAATTACCTATTTGGTCATTATA
Found at i:55271 original size:68 final size:68
Alignment explanation
Indices: 55157--55425 Score: 372
Period size: 68 Copynumber: 4.0 Consensus size: 68
55147 TTAGGGAATT
* *
55157 TTTATGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTTACTCGATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCACTCGATTA
55222 TTA
66 TTA
* * * *
55225 TTTAGGGTAAATTACCTATTTGGTCACTTATATATTATATAATTTATGTTTTGATCATTCGATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCACTCGATTA
55290 TTA
66 TTA
* * **
55293 TTTAGGGTAAACTACCTATTTGGTCAATTATATATTATCTAATATAAT-TCAT-GT-A-T--A-T
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAAT-TTATGTTTTGGTCACTCGATT
55351 ATTA
65 ATTA
**
55355 TTTAGGGTAAACTACCTATTTGGTCACTTCGATATTATCTAATTTATGTTTTGGTCACTCGATTA
1 TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCACTCGATTA
55420 TTA
66 TTA
55423 TTT
1 TTT
55426 TTTTGAAAAT
Statistics
Matches: 174, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
61 3 0.02
62 47 0.27
63 3 0.02
64 1 0.01
65 2 0.01
66 1 0.01
67 2 0.01
68 112 0.64
69 3 0.02
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (68 bp):
TTTAGGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTCACTCGATTA
TTA
Found at i:55401 original size:130 final size:135
Alignment explanation
Indices: 55157--55425 Score: 379
Period size: 130 Copynumber: 2.0 Consensus size: 135
55147 TTAGGGAATT
* * * **
55157 TTTATGGTAAACTACCTATTTGGTCACTTATATATTATCTAATTTATGTTTTGGTTACTCGATTA
1 TTTAGGGTAAACTACCTATTTGGTCAATTATATATTATCTAATTAATGTCATGGTTACTC-ATTA
* * *
55222 TTATTTAGGGTAAATTACCTATTTGGTCACTTATATATTATATAATTTATGTTTTGATCATTCGA
65 TTATTTAGGGTAAACTACCTATTTGGTCACTTAGATATTATATAATTTATGTTTTGATCACTCGA
55287 TTATTA
130 TTATTA
55293 TTTAGGGTAAACTACCTATTTGGTCAATTATATATTATCTAATATAAT-TCAT-G-TA-T-A-TA
1 TTTAGGGTAAACTACCTATTTGGTCAATTATATATTATCTAAT-TAATGTCATGGTTACTCATTA
* * *
55352 TTATTTAGGGTAAACTACCTATTTGGTCACTTCGATATTATCTAATTTATGTTTTGGTCACTCGA
65 TTATTTAGGGTAAACTACCTATTTGGTCACTTAGATATTATATAATTTATGTTTTGATCACTCGA
55417 TTATTA
130 TTATTA
55423 TTT
1 TTT
55426 TTTTGAAAAT
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
130 70 0.58
131 1 0.01
133 1 0.01
134 2 0.02
135 1 0.01
136 43 0.36
137 3 0.02
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (135 bp):
TTTAGGGTAAACTACCTATTTGGTCAATTATATATTATCTAATTAATGTCATGGTTACTCATTAT
TATTTAGGGTAAACTACCTATTTGGTCACTTAGATATTATATAATTTATGTTTTGATCACTCGAT
TATTA
Found at i:56243 original size:20 final size:20
Alignment explanation
Indices: 56149--56517 Score: 440
Period size: 20 Copynumber: 18.4 Consensus size: 20
56139 GATTTTCCAT
* ** *
56149 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
56169 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
56189 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56209 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
56229 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
56249 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56269 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
56289 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
56309 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
56329 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
56349 AACCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
56369 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
56389 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
*
56409 AATCGCAACGCGTATTCGTA
1 AATCGCAACGCGTATCCGTA
*
56429 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
56449 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
56469 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
56489 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
56509 AATCACAAC
1 AATCGCAAC
56518 ACTGAAATTT
Statistics
Matches: 301, Mismatches: 40, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
19 3 0.01
20 295 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:57239 original size:24 final size:24
Alignment explanation
Indices: 57200--57246 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
57190 AAATTTGGTC
57200 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
57224 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
57247 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:57438 original size:12 final size:12
Alignment explanation
Indices: 57421--57445 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57411 ATATAATCCT
57421 GAAGAAGAAAAA
1 GAAGAAGAAAAA
57433 GAAGAAGAAAAA
1 GAAGAAGAAAAA
57445 G
1 G
57446 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:59814 original size:33 final size:34
Alignment explanation
Indices: 59727--60050 Score: 254
Period size: 33 Copynumber: 9.5 Consensus size: 34
59717 CGGAAAATAC
* *
59727 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
59760 AATCGCAATGCGGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGATGAA
59794 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
59832 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
* *
59865 AATCGCAATGCGAAATGAAAATCGCAACGA-CAG
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
59898 AATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
59936 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
59969 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
60002 AATCGCAATGCGAAATGAAAATCGCAACGA-GAT
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
60035 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
60051 TATAAACGCA
Statistics
Matches: 256, Mismatches: 13, Indels: 44
0.82 0.04 0.14
Matches are distributed among these distances:
33 160 0.62
34 32 0.12
35 12 0.05
36 12 0.05
37 3 0.01
38 37 0.14
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATGAA
Found at i:59842 original size:52 final size:52
Alignment explanation
Indices: 59755--60028 Score: 423
Period size: 52 Copynumber: 5.2 Consensus size: 52
59745 AAATCCCAAC
59755 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
59808 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
59860 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
59912 ATTAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
59964 ATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
60016 ATGAAAATCGCAA
1 ATGAAAATCGCAA
60029 CGAGATAATC
Statistics
Matches: 210, Mismatches: 6, Indels: 11
0.93 0.03 0.05
Matches are distributed among these distances:
47 8 0.04
49 3 0.01
50 5 0.02
51 1 0.00
52 177 0.84
53 16 0.08
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:60010 original size:85 final size:85
Alignment explanation
Indices: 59813--60050 Score: 351
Period size: 85 Copynumber: 2.8 Consensus size: 85
59803 GCGAAATGAA
*
59813 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAAA-G--AATCGCAA
*
59873 TGCGAAATGAAAATCGCAACGACAG
61 TGCGAAATGAAAATCGCAACGAAAG
*
59898 AATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
59963 AATGAAAATCGCAACGAAAG
66 AATGAAAATCGCAACGAAAG
* *
59983 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
60048 AAT
66 AAT
60051 TATAAACGCA
Statistics
Matches: 142, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
85 123 0.87
87 3 0.02
88 5 0.04
89 1 0.01
90 10 0.07
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (85 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
AATGAAAATCGCAACGAAAG
Found at i:60166 original size:19 final size:19
Alignment explanation
Indices: 60057--60158 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
60047 AAATTATAAA
60057 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
60076 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
60096 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
60112 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
60129 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
60148 CGCATTGCGAT
1 CGCATTGCGAT
60159 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:60284 original size:14 final size:14
Alignment explanation
Indices: 60265--60301 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
60255 CATCAATTAC
60265 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
60279 ACAAATCATCTTTT
1 ACAAATCAACTTTT
60293 ACAAATCAA
1 ACAAATCAA
60302 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:62301 original size:14 final size:14
Alignment explanation
Indices: 62282--62338 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
62272 GCGAAATGAA
*
62282 AATCGCAACGACAG
1 AATCGCAACGAAAG
62296 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
62313 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
62329 AATCGCAACG
1 AATCGCAACG
62339 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:62309 original size:33 final size:33
Alignment explanation
Indices: 62263--62351 Score: 160
Period size: 33 Copynumber: 2.7 Consensus size: 33
62253 GCGAAACCAA
*
62263 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
62296 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
62329 AATCGCAACGCGAAATGAAAATC
1 AATCGCAACGCGAAATGAAAATC
62352 ACAATGCGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:62360 original size:19 final size:19
Alignment explanation
Indices: 62226--62351 Score: 119
Period size: 19 Copynumber: 7.1 Consensus size: 19
62216 TAGTTTACTT
* *
62226 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
62246 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
62265 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
62284 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
62298 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
62317 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
62331 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
62350 TC
1 TC
62352 ACAATGCGAT
Statistics
Matches: 89, Mismatches: 7, Indels: 21
0.76 0.06 0.18
Matches are distributed among these distances:
14 16 0.18
16 11 0.12
17 11 0.12
19 39 0.44
20 12 0.13
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:62378 original size:19 final size:19
Alignment explanation
Indices: 62356--62484 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
62346 AAAATCACAA
62356 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
62375 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
62389 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
62408 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
62422 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
62441 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
62460 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
62480 TGCGA
1 TGCGA
62485 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:62398 original size:33 final size:33
Alignment explanation
Indices: 62356--62447 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
62346 AAAATCACAA
62356 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
62389 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
62422 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
62448 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:62675 original size:93 final size:93
Alignment explanation
Indices: 62516--62982 Score: 918
Period size: 93 Copynumber: 5.0 Consensus size: 93
62506 GCAAATTGAA
62516 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
62581 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
62609 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
62674 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
62702 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
62767 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
62795 ACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
62859 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
62887 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
*
62952 GCAGAATTGGCAGCAACCGAATAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
62980 ACT
1 ACT
62983 AAGCAATCTA
Statistics
Matches: 372, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.25
93 280 0.75
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
GCAGAATTGGCAGCAACCGAACAAATTT
Found at i:62953 original size:185 final size:186
Alignment explanation
Indices: 62516--62982 Score: 918
Period size: 185 Copynumber: 2.5 Consensus size: 186
62506 GCAAATTGAA
62516 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
62581 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
66 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
62646 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
131 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
62702 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
62767 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TAT
66 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
62831 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
131 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
62887 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
*
62952 GCAGAATTGGCAGCAACCGAATAAATTTACT
66 GCAGAATTGGCAGCAACCGAACAAATTTACT
62983 AAGCAATCTA
Statistics
Matches: 280, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
185 154 0.55
186 126 0.45
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
Found at i:64708 original size:14 final size:14
Alignment explanation
Indices: 64689--64778 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
64679 TTGAAATGAA
64689 AATCGCAACGAGAG
1 AATCGCAACGAGAG
64703 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
64720 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
64736 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
64755 AATCGCAACGAGAG
1 AATCGCAACGAGAG
64769 AATCGCAACG
1 AATCGCAACG
64779 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:64726 original size:33 final size:33
Alignment explanation
Indices: 64681--64795 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
64671 TCTTTTGGTT
64681 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
64714 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
64747 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
64780 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
64796 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:64727 original size:19 final size:18
Alignment explanation
Indices: 64688--64800 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
64678 GTTGAAATGA
64688 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
64703 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
64720 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
64736 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
64753 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
64769 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
64786 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
64801 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:64831 original size:14 final size:14
Alignment explanation
Indices: 64812--64866 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
64802 TTTGGTTTCG
64812 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
64826 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
64845 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
64859 CGTTGCGA
1 CGTTGCGA
64867 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:64844 original size:33 final size:33
Alignment explanation
Indices: 64796--64866 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
64786 AAAATCGCAA
**
64796 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
64829 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
64862 TGCGA
1 TGCGA
64867 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:64874 original size:33 final size:33
Alignment explanation
Indices: 64807--64888 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
64797 GCGATTTTGG
***
64807 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
64840 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
64873 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
64889 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:64893 original size:20 final size:20
Alignment explanation
Indices: 64819--64907 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
64809 TCGCGTTGCG
64819 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
64839 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
64852 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
64872 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
64892 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
64908 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:65035 original size:33 final size:33
Alignment explanation
Indices: 64993--65063 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
64983 AATACTAACT
*
64993 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
65026 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
65059 TGAAA
1 TGAAA
65064 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:65296 original size:22 final size:22
Alignment explanation
Indices: 65244--65298 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
65234 TGGTTGTGAG
**
65244 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
65266 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
65288 GGATTTCTTCG
1 GGATTTCTTCG
65299 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:65469 original size:20 final size:20
Alignment explanation
Indices: 65444--65636 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
65434 CTTTAAATAT
65444 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
65464 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
65486 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
65505 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
65525 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
65545 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
65565 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
65585 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
65605 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
65625 CGCGTTGCGATT
1 CGCGTTGCGATT
65637 ATGGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:65631 original size:60 final size:60
Alignment explanation
Indices: 65444--65636 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
65434 CTTTAAATAT
**
65444 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
65505 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
65565 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
65625 CGCGTTGCGATT
1 CGCGTTGCGATT
65637 ATGGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:65717 original size:20 final size:20
Alignment explanation
Indices: 65692--65743 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
65682 AAGAATCGCG
*
65692 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
65712 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
65732 TTGCGATTCTGG
1 TTGCGATTCTGG
65744 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:70072 original size:37 final size:36
Alignment explanation
Indices: 70031--70111 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 36
70021 TCATTAAATC
*
70031 ATTTTTAAATTATATATTTTGTAAAAAAAATATATAA
1 ATTTTTAAATT-TAAATTTTGTAAAAAAAATATATAA
* * *
70068 ATTTTATGAATTTAAATTTTTTAAAGAAAATATATAA
1 ATTTT-TAAATTTAAATTTTGTAAAAAAAATATATAA
70105 ATATTTT
1 AT-TTTT
70112 TCAACTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 30 0.79
38 8 0.21
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (36 bp):
ATTTTTAAATTTAAATTTTGTAAAAAAAATATATAA
Found at i:79146 original size:2 final size:2
Alignment explanation
Indices: 79101--79127 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79091 CTTCTAGTGT
79101 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
79128 TCTTTACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:79937 original size:229 final size:227
Alignment explanation
Indices: 79527--79975 Score: 790
Period size: 229 Copynumber: 2.0 Consensus size: 227
79517 GTAAATTATC
* * *
79527 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
**
79592 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
*
79657 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAATTG
79722 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTT-AAAAAAGTATA
*
79755 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
79820 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
* *
79885 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAATAAATT
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAATT
79950 GAAACATAAATTACATAACTTTAAAA
195 GAAACATAAATTACATAACTTTAAAA
79976 GCAGTTTTAA
Statistics
Matches: 210, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
228 40 0.19
229 170 0.81
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATAAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:80071 original size:19 final size:19
Alignment explanation
Indices: 80026--80083 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
80016 TATATCGATC
* *
80026 CAAAACGATATACCAGGTAA
1 CAAAATGATAAACC-GGTAA
*
80046 -AATATGATAAACCGGTAA
1 CAAAATGATAAACCGGTAA
80064 CAAAATGATAAAACCGGTAA
1 CAAAATGAT-AAACCGGTAA
80084 AATTAAAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 5 0.16
19 17 0.53
20 10 0.31
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.17
Consensus pattern (19 bp):
CAAAATGATAAACCGGTAA
Found at i:80229 original size:20 final size:19
Alignment explanation
Indices: 80206--80252 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
80196 CGATATAACA
*
80206 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
80226 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
80246 GGTAAAA
1 GGTAAAA
80253 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:82597 original size:33 final size:33
Alignment explanation
Indices: 82555--82620 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
82545 AAATAGATGG
*
82555 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
82588 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
82621 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:84479 original size:19 final size:19
Alignment explanation
Indices: 84416--84473 Score: 107
Period size: 19 Copynumber: 3.1 Consensus size: 19
84406 AATGTCGAGT
*
84416 TAATTTTGTATAAGATTTA
1 TAATTTTGTATACGATTTA
84435 TAATTTTGTATACGATTTA
1 TAATTTTGTATACGATTTA
84454 TAATTTTGTATACGATTTA
1 TAATTTTGTATACGATTTA
84473 T
1 T
84474 TTTTTTTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.53
Consensus pattern (19 bp):
TAATTTTGTATACGATTTA
Found at i:85185 original size:198 final size:200
Alignment explanation
Indices: 84560--85782 Score: 2179
Period size: 200 Copynumber: 6.1 Consensus size: 200
84550 TTAAGGGTCA
* * *** *
84560 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-TTTACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
84624 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
84689 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
84754 TAATG
196 TAATG
84759 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
*
84824 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
84889 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
84954 TAATG
196 TAATG
* *** *
84959 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-TTTACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
85023 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
85087 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
85152 TAATG
196 TAATG
85157 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
*
85222 CATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
85287 GTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
85352 TAATG
196 TAATG
* *** *
85357 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATT-TTTACAAGGTGCATC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
85421 AATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
85485 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
85550 TAATG
196 TAATG
85555 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
*
85620 CATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
66 AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
85684 GTAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCTAAA
131 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
85749 TAATG
196 TAATG
*
85754 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
85783 CTAATTTAAA
Statistics
Matches: 983, Mismatches: 37, Indels: 8
0.96 0.04 0.01
Matches are distributed among these distances:
198 318 0.32
199 313 0.32
200 352 0.36
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (200 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGCACC
AATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAA
TAATG
Found at i:85304 original size:398 final size:398
Alignment explanation
Indices: 84560--85782 Score: 2376
Period size: 398 Copynumber: 3.1 Consensus size: 398
84550 TTAAGGGTCA
*
84560 TGTCGATACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
84625 ATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
66 ATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATG
*
84690 TAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
130 TAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAAT
84755 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
195 AATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTG
84820 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
260 CACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
84885 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
325 TAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTC
84950 TAAATAATG
390 TAAATAATG
84959 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
85024 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
66 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
85089 AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
85154 ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
196 ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
85219 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
85284 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
326 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
85349 AAATAATG
391 AAATAATG
85357 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
1 TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
85422 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
66 ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
85487 AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
131 AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
85552 ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
196 ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
85617 ACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
261 ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
* * *
85681 AATGTAATATGTAATTTTTCAATCTAACCGGTACAATAATACCGGTTTTATGAGAGAATATGTCT
326 AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
85746 AAATAATG
391 AAATAATG
*
85754 TGTCGACACTAATATATTTTGTGTCGATA
1 TGTCGACACTAATATAGTTTGTGTCGATA
85783 CTAATTTAAA
Statistics
Matches: 818, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
397 137 0.17
398 596 0.73
399 85 0.10
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (398 bp):
TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATTTTTACAAGGTGCATCA
ATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGT
AATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCTAAATA
ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAATTAAAAACAAGGTGC
ACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTAT
AATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATAAGTCT
AAATAATG
Found at i:87268 original size:18 final size:18
Alignment explanation
Indices: 87245--87306 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
87235 ATCGGTCGCA
* * *
87245 GAAGATGAAGCTGACGAT
1 GAAGATGACGATGATGAT
87263 GAAGATGACGATGATGAT
1 GAAGATGACGATGATGAT
*
87281 GATGATGACGATGATGAT
1 GAAGATGACGATGATGAT
87299 GAAGATGA
1 GAAGATGA
87307 TGATCCAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.39, C:0.06, G:0.34, T:0.21
Consensus pattern (18 bp):
GAAGATGACGATGATGAT
Found at i:87269 original size:6 final size:6
Alignment explanation
Indices: 87245--87306 Score: 61
Period size: 6 Copynumber: 10.3 Consensus size: 6
87235 ATCGGTCGCA
* * * * * *
87245 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
*
87293 GATGAT GAAGAT GA
1 GAAGAT GAAGAT GA
87307 TGATCCAAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.39, C:0.06, G:0.34, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:87280 original size:3 final size:3
Alignment explanation
Indices: 87260--87310 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
87250 TGAAGCTGAC
* * * *
87260 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAT GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
87308 GAT
1 GAT
87311 CCAAACAAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.37, C:0.04, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:87307 original size:12 final size:12
Alignment explanation
Indices: 87248--87310 Score: 81
Period size: 12 Copynumber: 5.2 Consensus size: 12
87238 GGTCGCAGAA
* *
87248 GATGAAGCTGAC
1 GATGAAGATGAT
*
87260 GATGAAGATGAC
1 GATGAAGATGAT
*
87272 GATGATGATGAT
1 GATGAAGATGAT
*
87284 GATGACGATGAT
1 GATGAAGATGAT
87296 GATGAAGATGAT
1 GATGAAGATGAT
87308 GAT
1 GAT
87311 CCAAACAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (12 bp):
GATGAAGATGAT
Found at i:89139 original size:23 final size:23
Alignment explanation
Indices: 89112--89169 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
89102 ATTACATAAG
89112 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTAGCCCTTATATA
* **
89135 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCCCTTATATA
89158 ATGTAATAGGTA
1 ATGTAATAGGTA
89170 ATGGTTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (23 bp):
ATGTAATAGGTAGCCCTTATATA
Found at i:89177 original size:23 final size:23
Alignment explanation
Indices: 89112--89179 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
89102 ATTACATAAG
* **
89112 ATGTAATAGGTAGCCCTTATATA
1 ATGTAATAGGTATCGGTTATATA
*
89135 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTATCGGTTATATA
89158 ATGTAATAGGTAAT-GGTTATAT
1 ATGTAATAGGT-ATCGGTTATAT
89180 TGTAAAGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 38 0.95
24 2 0.05
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (23 bp):
ATGTAATAGGTATCGGTTATATA
Found at i:89570 original size:23 final size:23
Alignment explanation
Indices: 89539--89601 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
89529 ATAGGTAAAC
*
89539 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
89562 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
89585 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
89602 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:89609 original size:23 final size:23
Alignment explanation
Indices: 89539--89611 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
89529 ATAGGTAAAC
* * **
89539 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
89562 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
89585 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
89608 ATAT
1 ATAT
89612 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:90278 original size:16 final size:16
Alignment explanation
Indices: 90254--90304 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
90244 ATAAAGATTG
*
90254 TTTAATTATATATTTA
1 TTTATTTATATATTTA
**
90270 TTTATTTATATATGCA
1 TTTATTTATATATTTA
*
90286 TTGCATTT-TATATTTA
1 TT-TATTTATATATTTA
90302 TTT
1 TTT
90305 TTAACTTTCT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
16 23 0.85
17 4 0.15
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (16 bp):
TTTATTTATATATTTA
Found at i:90856 original size:29 final size:29
Alignment explanation
Indices: 90787--90856 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
90777 ATACTATAAG
**
90787 ACAAAATAATCACCCTAACATCTTATATA
1 ACAAAATAATTTCCCTAACATCTTATATA
90816 ACAAAATAATTTCCCTAACATCTTATATGA
1 ACAAAATAATTTCCCTAACATCTTATAT-A
*
90846 A-AAAATTATTT
1 ACAAAATAATTT
90857 TTTTAAAGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (29 bp):
ACAAAATAATTTCCCTAACATCTTATATA
Found at i:97342 original size:2 final size:2
Alignment explanation
Indices: 97337--97363 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
97327 TCTCTCTCTC
97337 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
97364 TAATATTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:98497 original size:2 final size:2
Alignment explanation
Indices: 98490--98514 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98480 ATATTCCCTC
98490 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
98515 ACCTTGCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:99599 original size:9 final size:10
Alignment explanation
Indices: 99580--99612 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
99570 ATTTTTAATC
99580 AAAACTAAAA
1 AAAACTAAAA
99590 AAAACTAAAAA
1 AAAACT-AAAA
99601 AAAAC-AAAA
1 AAAACTAAAA
99610 AAA
1 AAA
99613 TTGGATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.32
10 6 0.27
11 9 0.41
ACGTcount: A:0.85, C:0.09, G:0.00, T:0.06
Consensus pattern (10 bp):
AAAACTAAAA
Found at i:99602 original size:11 final size:11
Alignment explanation
Indices: 99580--99612 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
99570 ATTTTTAATC
99580 AAAACT-AAAA
1 AAAACTAAAAA
99590 AAAACTAAAAA
1 AAAACTAAAAA
99601 AAAAC-AAAAA
1 AAAACTAAAAA
99611 AA
1 AA
99613 TTGGATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.85, C:0.09, G:0.00, T:0.06
Consensus pattern (11 bp):
AAAACTAAAAA
Found at i:103046 original size:29 final size:29
Alignment explanation
Indices: 102997--103063 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
102987 CCAATGGGTG
* *
102997 GGTGAGTGGTGGCAGGTTGATAACTTATA
1 GGTGAGTGGTGGCAGGATGATAACTGATA
*
103026 GGTGAGTGGTGGCGGGATGATAACTGATA
1 GGTGAGTGGTGGCAGGATGATAACTGATA
103055 GGTGAGTGG
1 GGTGAGTGG
103064 ATGATCACCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.22, C:0.06, G:0.45, T:0.27
Consensus pattern (29 bp):
GGTGAGTGGTGGCAGGATGATAACTGATA
Found at i:103158 original size:22 final size:20
Alignment explanation
Indices: 103133--103173 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
103123 AAAAATAGAA
103133 AAATTTAAGTTTTATCTTTTTG
1 AAATTTAAG-TTTAT-TTTTTG
*
103155 AAATTTATGTTTATTTTTT
1 AAATTTAAGTTTATTTTTT
103174 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (20 bp):
AAATTTAAGTTTATTTTTTG
Found at i:107242 original size:10 final size:10
Alignment explanation
Indices: 107227--107251 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
107217 TCGCCATTAA
107227 AGAGACGGAG
1 AGAGACGGAG
107237 AGAGACGGAG
1 AGAGACGGAG
107247 AGAGA
1 AGAGA
107252 GAGTGTGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.48, T:0.00
Consensus pattern (10 bp):
AGAGACGGAG
Found at i:109592 original size:16 final size:14
Alignment explanation
Indices: 109569--109608 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
109559 GTTTTTTCAG
109569 TTCGGTTCGGGTTT
1 TTCGGTTCGGGTTT
*
109583 TTAACGGTTCGAGTTT
1 TT--CGGTTCGGGTTT
109599 TTCGGTTCGG
1 TTCGGTTCGG
109609 TTCGGTTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.07, C:0.15, G:0.33, T:0.45
Consensus pattern (14 bp):
TTCGGTTCGGGTTT
Found at i:109802 original size:25 final size:25
Alignment explanation
Indices: 109772--109823 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
109762 AACCAAAAAT
*
109772 CGAACCGTTTAAAGCCAAACTGAAC
1 CGAACCGTTTAAAGCCAAACCGAAC
109797 CGAACCGTTTAAAGCCAAACCGAAC
1 CGAACCGTTTAAAGCCAAACCGAAC
109822 CG
1 CG
109824 TTTTACTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.31, G:0.17, T:0.13
Consensus pattern (25 bp):
CGAACCGTTTAAAGCCAAACCGAAC
Found at i:110744 original size:21 final size:21
Alignment explanation
Indices: 110720--110761 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
110710 GTCGAAAAAT
110720 TCAACAAAATAATCTCTTATA
1 TCAACAAAATAATCTCTTATA
110741 TCAACAAAATAATCTCTTATA
1 TCAACAAAATAATCTCTTATA
110762 GTCGAATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (21 bp):
TCAACAAAATAATCTCTTATA
Found at i:119375 original size:11 final size:11
Alignment explanation
Indices: 119342--119376 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
119332 TCTAGTCCCT
*
119342 GTACCTATAAA
1 GTACTTATAAA
*
119353 CTACTTATAAA
1 GTACTTATAAA
119364 GTACTTATAAA
1 GTACTTATAAA
119375 GT
1 GT
119377 TAAAAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (11 bp):
GTACTTATAAA
Found at i:125824 original size:13 final size:14
Alignment explanation
Indices: 125806--125835 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
125796 GTCCTTTATA
125806 TTTAAA-AAAATCT
1 TTTAAATAAAATCT
125819 TTTAAATAAAATCT
1 TTTAAATAAAATCT
125833 TTT
1 TTT
125836 GATATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
TTTAAATAAAATCT
Found at i:128412 original size:40 final size:41
Alignment explanation
Indices: 128357--128439 Score: 132
Period size: 40 Copynumber: 2.0 Consensus size: 41
128347 AGTAACATGA
*
128357 CTCCTTAAGAGGATCACACCCAGACT-ACTCTTGGAAACTT
1 CTCCTCAAGAGGATCACACCCAGACTAACTCTTGGAAACTT
*
128397 CTCCTCAAGAGGATCACACCCAGACTACACTTTTGGAAACTT
1 CTCCTCAAGAGGATCACACCCAGACTA-ACTCTTGGAAACTT
128439 C
1 C
128440 AAAACCTGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
40 25 0.64
42 14 0.36
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.24
Consensus pattern (41 bp):
CTCCTCAAGAGGATCACACCCAGACTAACTCTTGGAAACTT
Found at i:137035 original size:21 final size:18
Alignment explanation
Indices: 137004--137044 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 18
136994 TTCAAAGAGG
137004 TTTTATTTAATTTATATATA
1 TTTTATTTAATTT-TA-ATA
137024 TTTTATTTTAATTTTAATA
1 TTTTA-TTTAATTTTAATA
137043 TT
1 TT
137045 AATTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
21 8 0.40
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATTTAATTTTAATA
Found at i:137037 original size:11 final size:12
Alignment explanation
Indices: 137031--137166 Score: 91
Period size: 14 Copynumber: 10.8 Consensus size: 12
137021 ATATTTTATT
137031 TTAATTTTAATA
1 TTAATTTTAATA
137043 TTAATTTTTAA-A
1 TTAA-TTTTAATA
* *
137055 -TAAATTAAATA
1 TTAATTTTAATA
137066 TTAATATTTTAATA
1 TT-A-ATTTTAATA
*
137080 TTATATTATAGATA
1 TTA-ATTTTA-ATA
137094 TTAATTTTAATA
1 TTAATTTTAATA
137106 TTAATTTTTAA-A
1 TTAA-TTTTAATA
* *
137118 -TAAATTAAATA
1 TTAATTTTAATA
137129 TTAATTTTTTAATA
1 TTAA--TTTTAATA
*
137143 TTATATTATAGATA
1 TTA-ATTTTA-ATA
137157 TTTAATTTTA
1 -TTAATTTTA
137167 TATCATATAA
Statistics
Matches: 98, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
10 8 0.08
11 8 0.08
12 17 0.17
13 29 0.30
14 32 0.33
15 4 0.04
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (12 bp):
TTAATTTTAATA
Found at i:137065 original size:23 final size:26
Alignment explanation
Indices: 137033--137109 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
137023 ATTTTATTTT
*
137033 AATTTTAATATTAATTTTTAA-A-TA
1 AATTATAATATTAATTTTTAATATTA
137057 AATTA-AATATTAATATTTTAATATTA
1 AATTATAATATTAAT-TTTTAATATTA
*
137083 TATTATAGATATTAA-TTTTAATATTA
1 AATTATA-ATATTAATTTTTAATATTA
137109 A
1 A
137110 TTTTTAAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
23 9 0.20
24 10 0.22
25 1 0.02
26 17 0.38
27 1 0.02
28 7 0.16
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (26 bp):
AATTATAATATTAATTTTTAATATTA
Found at i:137106 original size:63 final size:64
Alignment explanation
Indices: 137030--137166 Score: 258
Period size: 63 Copynumber: 2.2 Consensus size: 64
137020 TATATTTTAT
137030 TTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATATTTTAATATTATATTATAGATA
1 TTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATATTTTAATATTATATTATAGATA
*
137094 -TTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
1 TTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATATTTTAATATTATATTATAGATA
137157 TTTAATTTTA
1 TTTAATTTTA
137167 TATCATATAA
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
63 62 0.87
64 9 0.13
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (64 bp):
TTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATATTTTAATATTATATTATAGATA
Found at i:137145 original size:37 final size:40
Alignment explanation
Indices: 137062--137163 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 40
137052 AAATAAATTA
*
137062 AATATTAATATTTTAATATTATATTATAGATATTAATTTT
1 AATATTAATATTTTAATATTAAATTATAGATATTAATTTT
137102 AATATTAAT-TTTTAA-A-TAAATTA-A-ATATTAATTTTTT
1 AATATTAATATTTTAATATTAAATTATAGATATTAA--TTTT
* *
137139 AATATT-ATATTATAGATATTTAATT
1 AATATTAATATTTTA-ATATTAAATT
137164 TTATATCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
35 7 0.13
36 3 0.06
37 20 0.38
38 2 0.04
39 7 0.13
40 14 0.26
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (40 bp):
AATATTAATATTTTAATATTAAATTATAGATATTAATTTT
Found at i:137221 original size:20 final size:19
Alignment explanation
Indices: 137161--137222 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
137151 TAGATATTTA
*
137161 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
137180 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
137198 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
137218 ATTTT
1 ATTTT
137223 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:137736 original size:31 final size:31
Alignment explanation
Indices: 137678--137737 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
137668 GTAGTTGTAT
* * **
137678 AATTATTTAAATTTTAGTATTGTAAAACTAA
1 AATTATTTAAATATCAGTATTACAAAACTAA
137709 AATTATTTAAATATCAGTATTACAAAACT
1 AATTATTTAAATATCAGTATTACAAAACT
137738 CTTTTAAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (31 bp):
AATTATTTAAATATCAGTATTACAAAACTAA
Found at i:144927 original size:15 final size:15
Alignment explanation
Indices: 144891--144934 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
144881 GGTGTGCAAA
144891 TCCGGGTACCCGGATT
1 TCCGGGTACCC-GATT
*
144907 TTCGGGTACCCGATT
1 TCCGGGTACCCGATT
144922 TCCGGGTACCCGA
1 TCCGGGTACCCGA
144935 AACTTCCGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.25
Consensus pattern (15 bp):
TCCGGGTACCCGATT
Found at i:144993 original size:17 final size:16
Alignment explanation
Indices: 144971--145039 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 16
144961 CCGTGTCCCG
*
144971 ACCCGGATGTTACGGGT
1 ACCCGGATATT-CGGGT
* *
144988 ACCCGG-TAATCGGCT
1 ACCCGGATATTCGGGT
*
145003 ACCCGGATTTTGCGGGT
1 ACCCGGATATT-CGGGT
*
145020 ACCCGG-TAATCGGGT
1 ACCCGGATATTCGGGT
145035 ACCCG
1 ACCCG
145040 ATACCTGGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
15 20 0.48
16 6 0.14
17 16 0.38
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (16 bp):
ACCCGGATATTCGGGT
Found at i:145007 original size:15 final size:15
Alignment explanation
Indices: 144983--145039 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
144973 CCGGATGTTA
144983 CGGGTACCCGGTAAT
1 CGGGTACCCGGTAAT
* **
144998 CGGCTACCCGGATTTT
1 CGGGTACCCGG-TAAT
145014 GCGGGTACCCGGTAAT
1 -CGGGTACCCGGTAAT
145030 CGGGTACCCG
1 CGGGTACCCG
145040 ATACCTGGTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.59
16 4 0.12
17 10 0.29
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (15 bp):
CGGGTACCCGGTAAT
Found at i:145007 original size:32 final size:32
Alignment explanation
Indices: 144971--145039 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
144961 CCGTGTCCCG
144971 ACCCGGATGTTACGGGTACCCGGTAATCGGCT
1 ACCCGGATGTTACGGGTACCCGGTAATCGGCT
* * *
145003 ACCCGGATTTTGCGGGTACCCGGTAATCGGGT
1 ACCCGGATGTTACGGGTACCCGGTAATCGGCT
145035 ACCCG
1 ACCCG
145040 ATACCTGGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (32 bp):
ACCCGGATGTTACGGGTACCCGGTAATCGGCT
Found at i:150989 original size:29 final size:30
Alignment explanation
Indices: 150939--150996 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
150929 TAGTATTGGT
* * *
150939 TTTTTTATAAACCGATCTA-TTTTATTTTA
1 TTTTTTACAAACCAATCAATTTTTATTTTA
*
150968 TTTTTTACAAATCAATCAATTTTTATTTT
1 TTTTTTACAAACCAATCAATTTTTATTTT
150997 TGAAAAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (30 bp):
TTTTTTACAAACCAATCAATTTTTATTTTA
Found at i:151872 original size:24 final size:24
Alignment explanation
Indices: 151845--151947 Score: 163
Period size: 24 Copynumber: 4.3 Consensus size: 24
151835 TAGTATATCT
151845 AGCCGTTACATATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTCC
*
151869 AGCCGTTACTTATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTCC
151893 AGCCGTTACATATTTATTATTTTCC
1 AGCCGTTACATATTTATTA-TTTCC
* *
151918 AGCCGTTACTTA-TTATTATTTTC
1 AGCCGTTACATATTTATTATTTCC
151941 AGCCGTT
1 AGCCGTT
151948 GATACAAAAT
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
23 11 0.15
24 47 0.64
25 16 0.22
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (24 bp):
AGCCGTTACATATTTATTATTTCC
Found at i:151882 original size:49 final size:49
Alignment explanation
Indices: 151829--151931 Score: 163
Period size: 48 Copynumber: 2.1 Consensus size: 49
151819 TAATTTATTT
*
151829 TTATTCTAGTATATCTAGCCGTTACATATTTATTA-TTTCCAGCCGTTAC
1 TTATT-TAGTATATCCAGCCGTTACATATTTATTATTTTCCAGCCGTTAC
* *
151878 TTATTTATTATTTCCAGCCGTTACATATTTATTATTTTCCAGCCGTTAC
1 TTATTTAGTATATCCAGCCGTTACATATTTATTATTTTCCAGCCGTTAC
151927 TTATT
1 TTATT
151932 ATTATTTTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
48 26 0.52
49 24 0.48
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (49 bp):
TTATTTAGTATATCCAGCCGTTACATATTTATTATTTTCCAGCCGTTAC
Found at i:151898 original size:48 final size:48
Alignment explanation
Indices: 151845--151947 Score: 181
Period size: 48 Copynumber: 2.1 Consensus size: 48
151835 TAGTATATCT
151845 AGCCGTTACATATTTATTA-TTTCCAGCCGTTACTTATTTATTATTTCC
1 AGCCGTTACATATTTATTATTTTCCAGCCGTTACTTA-TTATTATTTCC
*
151893 AGCCGTTACATATTTATTATTTTCCAGCCGTTACTTATTATTATTTTC
1 AGCCGTTACATATTTATTATTTTCCAGCCGTTACTTATTATTATTTCC
151941 AGCCGTT
1 AGCCGTT
151948 GATACAAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
48 36 0.68
49 17 0.32
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (48 bp):
AGCCGTTACATATTTATTATTTTCCAGCCGTTACTTATTATTATTTCC
Found at i:154614 original size:21 final size:21
Alignment explanation
Indices: 154590--154636 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
154580 CCCCTAATAT
154590 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
154611 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
154632 ATTAA
1 ATTAA
154637 AGTTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTAATTTATTCTTAAATTAA
Found at i:154635 original size:26 final size:26
Alignment explanation
Indices: 154602--154662 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
154592 TAATTTATTC
154602 TTAAATTAAA-TTAATTTATTCTTAAA
1 TTAAATTAAAGTT-ATTTATTCTTAAA
*
154628 TTAAATTAAAGTTATTTATTCTTAAT
1 TTAAATTAAAGTTATTTATTCTTAAA
*
154654 TTATATTAA
1 TTAAATTAA
154663 TATATCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 30 0.94
27 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (26 bp):
TTAAATTAAAGTTATTTATTCTTAAA
Found at i:158349 original size:26 final size:26
Alignment explanation
Indices: 158299--158372 Score: 90
Period size: 21 Copynumber: 3.1 Consensus size: 26
158289 TAATTTATTC
158299 TTAAATTAAATTAATTTA---TTT--
1 TTAAATTAAATTAATTTATTCTTTAA
158320 TTAAATTAAATTAATTTATTCTTTAA
1 TTAAATTAAATTAATTTATTCTTTAA
158346 TTAAATTAAAGTT-ATTTATTC-TTAA
1 TTAAATTAAA-TTAATTTATTCTTTAA
158371 TT
1 TT
158373 TATTAATATT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
21 18 0.38
24 3 0.06
25 6 0.13
26 18 0.38
27 2 0.04
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (26 bp):
TTAAATTAAATTAATTTATTCTTTAA
Found at i:158370 original size:21 final size:21
Alignment explanation
Indices: 158287--158354 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
158277 CTCCCTATAT
158287 ATTAATTTATTCTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
*
158308 ATTAATTTATTTTTAAATTAA
1 ATTAATTTATTCTTAAATTAA
*
158329 ATTAATTTATTCTTTAATTAA
1 ATTAATTTATTCTTAAATTAA
158350 ATTAA
1 ATTAA
158355 AGTTATTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTAATTTATTCTTAAATTAA
Found at i:162666 original size:2 final size:2
Alignment explanation
Indices: 162659--162743 Score: 113
Period size: 2 Copynumber: 44.0 Consensus size: 2
162649 TGGTTCAATG
* *
162659 AT AT AT AT AT CT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
162701 AT AT -T AT AT AT AT AT AG AT AT -T A- AT AT AT CT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
162740 AT AT
1 AT AT
162744 TAATAAAGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
1 3 0.04
2 69 0.96
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:164794 original size:25 final size:25
Alignment explanation
Indices: 164766--164819 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
164756 CTTATGTAGT
*
164766 TAGTCATAATTGTCCTTAGTGTATA
1 TAGTCATAATTGTCCTTAATGTATA
164791 TAGTCATAATTGTCCTTAATGTATA
1 TAGTCATAATTGTCCTTAATGTATA
164816 TAGT
1 TAGT
164820 TACACCATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (25 bp):
TAGTCATAATTGTCCTTAATGTATA
Found at i:172608 original size:334 final size:333
Alignment explanation
Indices: 172000--172667 Score: 1176
Period size: 334 Copynumber: 2.0 Consensus size: 333
171990 GCAACCGATG
172000 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATTCACGACTTTCGTCACGTGTTT
1 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATTCACGACTTTCGTCACGTGTTT
*
172065 GTTTTAAAACAAGATGAATGGTGTGAAATGTGATAGAGTGAATTGATCCAACAATGACAATGGGA
66 GTTTTAAAACAAGATGAATGGTGTGAAATGTGATAGAGTGAATTGATCCAACAATGACAATGAGA
***
172130 ATGGCTTCTGGCGATAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACTC
131 ATGGCTTCCAACGATAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACTC
*
172195 CCATCTCGATTTTGTGTTGGTAAATAAACGAGTAATTTCCCTATAACCAAATTTGTGAGAATGCG
196 CCATCTCGATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAACCAAATTTGTGAGAATGCG
*
172260 AAATAAAAGCGGAAAAATAATACCCGAAATTGATAACGGAGTTCATCCAATTTTGCCTACATCTC
261 AAATAAAAGCGGAAAAATAATACCCGAAATTGATAACGGAGTTCAGCCAATTTTGCCTACATCTC
172325 CGGATTGC
326 CGGATTGC
* * *
172333 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATTTATGGCTTTCGTCACGTGTTT
1 TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATTCACGACTTTCGTCACGTGTTT
* *
172398 GTTTTAAAACAAGATGAATGGTGTGAAATGTGATGGAGTGAATTGATCCAACAATGAGAATGAGA
66 GTTTTAAAACAAGATGAATGGTGTGAAATGTGATAGAGTGAATTGATCCAACAATGACAATGAGA
*
172463 ATGGCTTCCAACGATAAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATATGAACT
131 ATGGCTTCCAACGAT-AACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACT
172528 CCCATCTCGATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAACTC-AATTTGTGAGAATG
195 CCCATCTCGATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAAC-CAAATTTGTGAGAATG
* * *
172592 CGAAATAAAAGCGGAAAAATAATACTCGGAATTGATAACGGAGTTCAGCTAATTTTGCCTACATC
259 CGAAATAAAAGCGGAAAAATAATACCCGAAATTGATAACGGAGTTCAGCCAATTTTGCCTACATC
172657 TCCGGATTGC
324 TCCGGATTGC
172667 T
1 T
172668 GCAGATCTTT
Statistics
Matches: 318, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
333 136 0.43
334 181 0.57
335 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (333 bp):
TAGAGGTTGTCGATGGTCCGACCACACAAAGGGTAAAACTGATTCACGACTTTCGTCACGTGTTT
GTTTTAAAACAAGATGAATGGTGTGAAATGTGATAGAGTGAATTGATCCAACAATGACAATGAGA
ATGGCTTCCAACGATAACTTTCCGAGAATATGGCTTAACCATTTCCTTTGAAATAATACGAACTC
CCATCTCGATTTTATGTTGGTAAATAAACGAGTAATTTCCCTATAACCAAATTTGTGAGAATGCG
AAATAAAAGCGGAAAAATAATACCCGAAATTGATAACGGAGTTCAGCCAATTTTGCCTACATCTC
CGGATTGC
Found at i:180396 original size:2 final size:2
Alignment explanation
Indices: 180389--180413 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
180379 GACTTATACG
180389 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
180414 GGATATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:183039 original size:12 final size:12
Alignment explanation
Indices: 183022--183053 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
183012 AAGCTTTCAA
183022 AACAAGAACTTC
1 AACAAGAACTTC
183034 AACAAGAACTTC
1 AACAAGAACTTC
183046 AACAAGAA
1 AACAAGAA
183054 GAAGAAGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.22, G:0.09, T:0.12
Consensus pattern (12 bp):
AACAAGAACTTC
Done.