genome.fa.s78.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000078.1 Hibiscus syriacus cultivar Beakdansim tig00000142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66794

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27--89	18	3.6	17	74	6	63	25	7	19	47	1.76
23--110	35	2.5	36	88	1	124	30	7	15	45	1.75
182--236	22	2.5	23	77	17	62	41	0	9	49	1.34
3843--3900	29	2.0	29	83	6	73	13	32	25	27	1.94
3912--3969	20	2.9	20	97	0	107	25	36	27	10	1.89
3910--4029	10	11.4	10	70	10	87	24	30	35	10	1.88
3954--4040	33	2.6	33	90	0	129	24	28	37	9	1.86
4094--4145	23	2.3	23	89	0	77	9	38	26	25	1.86
4128--4160	14	2.4	14	94	0	57	6	30	39	24	1.79
4133--4193	10	5.6	11	81	15	58	9	26	37	26	1.87
10621--10663	21	2.0	21	82	8	52	46	30	0	23	1.52
21340--21423	33	2.5	33	98	0	159	20	33	7	39	1.80
21608--21697	23	3.9	23	88	2	135	56	18	13	11	1.66
21570--21705	24	5.8	24	79	10	136	56	16	14	12	1.67
21610--21705	47	2.0	47	95	0	174	57	17	13	11	1.65
21851--21917	14	4.8	14	86	0	98	56	17	13	11	1.66
21851--21914	28	2.3	28	94	0	110	57	17	12	12	1.64
22321--22346	2	13.0	2	100	0	52	50	0	0	50	1.00
23646--23699	15	3.5	15	76	16	56	64	3	0	31	1.11
25311--25448	48	2.9	48	88	1	186	50	18	7	24	1.72
26256--26314	22	2.6	23	91	5	102	23	30	27	18	1.98
26967--27020	2	27.0	2	100	0	108	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28043--28087	21	2.1	21	87	0	63	15	24	28	31	1.96
31256--31334	22	3.6	22	91	6	126	25	27	27	18	1.98
33012--33056	21	2.1	21	87	0	63	15	24	28	31	1.96
35361--35404	22	2.0	22	86	8	63	40	2	2	54	1.25
37203--37345	69	2.1	69	100	0	286	18	16	13	51	1.77
41461--41540	41	2.0	41	94	0	142	28	16	21	33	1.95
50636--50693	12	4.9	12	75	14	50	37	22	18	20	1.94
51614--51663	25	2.1	23	82	14	57	28	22	30	20	1.98
64299--64327	13	2.1	14	93	6	51	37	6	24	31	1.82

Tables:   1

The End!