Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000780.1 Hibiscus syriacus cultivar Beakdansim tig00001515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63533

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--453
55
8.4
55
84
6
552
28
16
25
28
1.97
1--477
108
4.4
108
85
5
626
28
16
25
29
1.97
1--453
218
2.1
215
88
5
664
28
16
25
28
1.97
5217--5270
20
2.7
20
97
0
99
38
16
14
29
1.89
5260--5308
20
2.5
20
96
0
89
44
22
14
18
1.85
5880--5933
20
2.7
19
85
2
72
14
16
20
48
1.81
6804--6959
31
5.0
31
88
1
206
39
19
17
23
1.93
7940--7999
20
2.9
21
85
7
86
18
26
23
31
1.97
11729--11885
31
5.1
31
92
1
244
40
22
17
20
1.92
12800--12859
22
2.7
22
100
0
120
15
26
33
25
1.95
12893--12952
20
2.9
21
87
7
86
18
25
25
31
1.97
13837--13878
17
2.5
17
80
3
50
40
21
0
38
1.53
16682--16823
31
4.6
31
97
0
257
38
22
19
19
1.93
17810--17869
20
2.9
21
87
7
86
16
26
25
31
1.96
20013--20056
21
2.1
21
83
8
54
20
9
38
31
1.84
20071--20129
21
2.8
21
94
0
100
20
15
28
35
1.93
20422--20515
42
2.2
42
86
3
127
19
37
21
22
1.95
20422--20515
21
4.5
21
75
4
82
19
37
21
22
1.95
21841--21989
64
2.3
64
92
0
244
29
1
17
51
1.53
21890--21940
27
1.9
26
92
4
84
29
0
19
50
1.48
23952--24001
25
2.0
25
92
0
82
44
20
8
28
1.79
24410--24445
18
2.0
18
94
0
63
19
2
22
55
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26718--26771
24
2.2
24
83
0
63
42
14
16
25
1.87
26898--26931
12
2.8
12
90
0
50
14
0
29
55
1.40
27477--27514
16
2.5
15
84
12
51
65
0
5
28
1.14
27527--27574
22
2.2
22
81
7
53
25
8
37
29
1.85
27652--27779
20
6.5
19
78
10
73
33
12
22
31
1.91
27691--27784
20
4.7
19
83
11
107
29
12
25
31
1.93
27792--27843
20
2.5
20
96
3
95
21
17
25
36
1.94
31138--31169
13
2.5
13
94
0
55
18
21
31
28
1.97
32710--32763
24
2.2
24
93
0
90
61
18
9
11
1.55
32713--32768
14
4.3
14
73
17
57
58
19
12
8
1.60
34410--34472
29
2.2
29
83
11
76
50
0
7
41
1.31
37262--37507
54
4.6
54
90
1
377
32
20
18
28
1.96
37836--38006
94
1.8
93
86
7
247
29
23
12
34
1.91
38024--38074
20
2.5
21
84
9
70
17
31
17
33
1.94
38038--38075
20
1.9
20
100
0
76
15
36
15
31
1.90
38820--38855
17
2.1
18
89
5
56
33
30
0
36
1.58
44129--44445
54
5.9
54
89
0
456
33
19
17
28
1.95
44412--44476
33
2.0
33
90
0
103
30
24
15
29
1.96
44359--44532
87
2.0
86
88
1
258
32
20
17
29
1.95
44445--44617
54
3.2
54
88
1
258
33
19
17
30
1.94
45148--45185
20
1.9
20
94
0
67
18
36
13
31
1.89
51234--51585
54
6.6
54
87
3
496
32
19
18
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52002--52073
22
3.5
20
78
14
76
26
26
15
31
1.95
52002--52073
19
3.6
19
77
15
74
26
26
15
31
1.95
51905--52086
95
1.9
94
85
6
251
26
24
12
36
1.91
55251--55292
6
6.5
6
86
10
57
80
0
2
16
0.81
55253--55299
21
2.2
22
88
7
71
76
0
4
19
0.95
57342--57392
2
26.5
2
84
7
70
50
0
0
49
1.00

Tables:   1

The End!