Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007800.1 Hibiscus syriacus cultivar Beakdansim tig00110114_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4652821
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 20 of 23
Found at i:3897264 original size:15 final size:15
Alignment explanation
Indices: 3897244--3897273 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3897234 GCAAAGTATA
3897244 TACAAATTCTAAAAC
1 TACAAATTCTAAAAC
3897259 TACAAATTCTAAAAC
1 TACAAATTCTAAAAC
3897274 CTAATTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
TACAAATTCTAAAAC
Found at i:3900073 original size:90 final size:90
Alignment explanation
Indices: 3899963--3900129 Score: 298
Period size: 90 Copynumber: 1.9 Consensus size: 90
3899953 ATTTAATTTT
* * *
3899963 AATTAATTAAATATATATTTAATTAATTTGAAATAATAAAATCCCTAATATGATTAGGGTAATTT
1 AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGGTAACTT
3900028 GGATATAAAAGGATTATTAAATTCC
66 GGATATAAAAGGATTATTAAATTCC
3900053 AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGGTAACTT
1 AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGGTAACTT
*
3900118 GGCTATAAAAGG
66 GGATATAAAAGG
3900130 GTGTGCTAGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 73 1.00
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (90 bp):
AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGGTAACTT
GGATATAAAAGGATTATTAAATTCC
Found at i:3905589 original size:12 final size:12
Alignment explanation
Indices: 3905569--3905623 Score: 85
Period size: 12 Copynumber: 4.7 Consensus size: 12
3905559 CCATCAATTT
*
3905569 AGTTTGGTGAAG
1 AGTTAGGTGAAG
3905581 AGTTAGGTGAAG
1 AGTTAGGTGAAG
*
3905593 AATTAGGTGAAG
1 AGTTAGGTGAAG
3905605 AGTTAGGTG-AG
1 AGTTAGGTGAAG
3905616 AGTTAGGT
1 AGTTAGGT
3905624 ATTTGTATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
11 10 0.25
12 30 0.75
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.29
Consensus pattern (12 bp):
AGTTAGGTGAAG
Found at i:3910134 original size:12 final size:12
Alignment explanation
Indices: 3910117--3910160 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
3910107 ACATGAATTT
3910117 AGTTAGGTGAAG
1 AGTTAGGTGAAG
*
3910129 AGTTAGATGAAG
1 AGTTAGGTGAAG
*
3910141 AATTAGGTGAAG
1 AGTTAGGTGAAG
3910153 AGTTAGGT
1 AGTTAGGT
3910161 ATTTGTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.27
Consensus pattern (12 bp):
AGTTAGGTGAAG
Found at i:3918710 original size:8 final size:8
Alignment explanation
Indices: 3918697--3918737 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
3918687 CTCATTTTCA
3918697 GAGAATTT
1 GAGAATTT
3918705 GAGAATTT
1 GAGAATTT
*
3918713 -AGAGTTT
1 GAGAATTT
*
3918720 GGGAATTT
1 GAGAATTT
3918728 GAGAATTT
1 GAGAATTT
3918736 GA
1 GA
3918738 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:3919036 original size:128 final size:128
Alignment explanation
Indices: 3918808--3919436 Score: 1084
Period size: 128 Copynumber: 4.9 Consensus size: 128
3918798 TAATCGGAGT
*
3918808 ACTATTCACATGAAGGCGCGTTCTCGGGGTG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTA
1 ACTATTCACATGAAGGCGCGTTCCCGGGG-GCGCGCCTTCCATTATTTTGTCAGAGAATATGTTA
3918872 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
65 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *
3918936 ACTATTCACATAAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAAAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
3919001 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
3919064 ACTATTCACATGAATGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
3919129 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
3919192 ACTATTCACATGAAGGCGCGTTCCCTGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* *
3919257 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACATTA-TTCATATCAGTACCTATTATTTC
66 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGAT-ATATCAGTACCTATTATTTC
* *** * * *
3919320 TC-AGGGGACTTGAAGGCGCGTTCCTGGGGGCGCGCCTTCCATTATTTTGTCATAGAATATGTTA
1 ACTA-TTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTA
3919384 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
65 TCATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
3919437 AATCAGGTAA
Statistics
Matches: 477, Mismatches: 20, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
127 3 0.01
128 473 0.99
129 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (128 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:3919875 original size:34 final size:34
Alignment explanation
Indices: 3919837--3919937 Score: 139
Period size: 34 Copynumber: 3.0 Consensus size: 34
3919827 AAATTTAATG
* *
3919837 TTAAATTTTGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
3919871 TTAAATTTCGAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
3919905 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
3919938 AACATTTATC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:3920853 original size:18 final size:20
Alignment explanation
Indices: 3920830--3920868 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
3920820 AAAATTGGGG
3920830 TAGTCA-TTTC-CGTTGCGA
1 TAGTCATTTTCGCGTTGCGA
3920848 TAGTCATTTTCGCGTTGCGA
1 TAGTCATTTTCGCGTTGCGA
3920868 T
1 T
3920869 TTTAAGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (20 bp):
TAGTCATTTTCGCGTTGCGA
Found at i:3922727 original size:20 final size:20
Alignment explanation
Indices: 3922675--3922741 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
3922665 AAAACTTAAA
* **
3922675 ATCGCAACACAAAAATGAAA
1 ATCGCAACACGAAAATGACT
3922695 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
* **
3922715 ATCGCAACGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
3922735 ATCGCAA
1 ATCGCAA
3922742 TGAGATAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.45, C:0.24, G:0.15, T:0.16
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:3923190 original size:22 final size:22
Alignment explanation
Indices: 3923163--3923213 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
3923153 GATGGAGATA
3923163 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
* *
3923185 GACGGATTTTGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
3923207 GACGGAT
1 GACGGAT
3923214 GTCACCGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.14, G:0.45, T:0.22
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:3923411 original size:20 final size:20
Alignment explanation
Indices: 3923388--3923533 Score: 152
Period size: 20 Copynumber: 7.2 Consensus size: 20
3923378 TTATCGCAAC
3923388 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
*
3923408 GCGATAGTCAGAATCACGTT
1 GCGATAGTCAGAATCGCGTT
3923428 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
* **
3923448 GCTATTACGT-ATTATCGCGTT
1 GCGA-TA-GTCAGAATCGCGTT
* * *
3923469 GCAATAGTTAGAACCGCGTT
1 GCGATAGTCAGAATCGCGTT
* * *
3923489 GCGATA-TACATATTCGCATT
1 GCGATAGT-CAGAATCGCGTT
*
3923509 GCGATAGTCAGAATCGCATT
1 GCGATAGTCAGAATCGCGTT
3923529 GCGAT
1 GCGAT
3923534 TTACATATTT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
19 3 0.03
20 84 0.81
21 15 0.14
22 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (20 bp):
GCGATAGTCAGAATCGCGTT
Found at i:3923539 original size:40 final size:40
Alignment explanation
Indices: 3923388--3923553 Score: 165
Period size: 40 Copynumber: 4.1 Consensus size: 40
3923378 TTATCGCAAC
* * * * *
3923388 GCGATAGTCAGAATCGCGTTGCGATAGT-CAGAATCACGTT
1 GCGATAGTCAGAATCGCGTTGCGAT-TTACATATTCGCATT
* * *
3923428 GCGATAGTCAGAATCGCGTTGCTA-TTACGTATTATCGCGTT
1 GCGATAGTCAGAATCGCGTTGCGATTTACATA-T-TCGCATT
* * * *
3923469 GCAATAGTTAGAACCGCGTTGCGATATACATATTCGCATT
1 GCGATAGTCAGAATCGCGTTGCGATTTACATATTCGCATT
* *
3923509 GCGATAGTCAGAATCGCATTGCGATTTACATATTTGCATT
1 GCGATAGTCAGAATCGCGTTGCGATTTACATATTCGCATT
3923549 GCGAT
1 GCGAT
3923554 TTTCTAAAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 68 0.66
41 27 0.26
42 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (40 bp):
GCGATAGTCAGAATCGCGTTGCGATTTACATATTCGCATT
Found at i:3923547 original size:20 final size:20
Alignment explanation
Indices: 3923487--3923555 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
3923477 TAGAACCGCG
*
3923487 TTGCGATATACATATTCGCA
1 TTGCGATTTACATATTCGCA
* * *
3923507 TTGCGATAGT-CAGAATCGCA
1 TTGCGAT-TTACATATTCGCA
*
3923527 TTGCGATTTACATATTTGCA
1 TTGCGATTTACATATTCGCA
3923547 TTGCGATTT
1 TTGCGATTT
3923556 TCTAAAATCG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (20 bp):
TTGCGATTTACATATTCGCA
Found at i:3924008 original size:32 final size:31
Alignment explanation
Indices: 3923966--3924054 Score: 81
Period size: 33 Copynumber: 2.7 Consensus size: 31
3923956 TAAATAGTTT
*
3923966 TTATATTTTATACTAATATAATTATATAAATA
1 TTATTTTTTATA-TAATATAATTATATAAATA
* * *
3923998 TTATTTTTTATTAAAATAATATTTATATAATTA
1 TTATTTTTTA-TATAAT-ATAATTATATAAATA
*
3924031 TTATTTATTTAAATTAAT-TAATTA
1 TTATTT-TTTATA-TAATATAATTA
3924055 ATTATTTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
32 17 0.37
33 22 0.48
34 7 0.15
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (31 bp):
TTATTTTTTATATAATATAATTATATAAATA
Found at i:3924017 original size:30 final size:31
Alignment explanation
Indices: 3923969--3924064 Score: 78
Period size: 30 Copynumber: 3.3 Consensus size: 31
3923959 ATAGTTTTTA
* * *
3923969 TATTTTATACTAATATAATTATATAAAT-AT
1 TATTTTTTATTAAAATAATTATATAAATAAT
* *
3923999 TATTTTTTATTAAAATAA-TATTTATATAAT
1 TATTTTTTATTAAAATAATTATATAAATAAT
* *
3924029 TATTATTTATTTAAATTAATTA-AT---TAAT
1 TATTTTTTA-TTAAAATAATTATATAAATAAT
3924057 TATTTTTT
1 TATTTTTT
3924065 GTGTTAATTA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
28 11 0.20
29 7 0.13
30 25 0.46
31 9 0.17
32 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (31 bp):
TATTTTTTATTAAAATAATTATATAAATAAT
Found at i:3924073 original size:20 final size:17
Alignment explanation
Indices: 3924052--3924086 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
3924042 AATTAATTAA
*
3924052 TTAATTAT-TTTTTGTG
1 TTAATTATATTTTTTTG
3924068 TTAATTATATTTTTTTG
1 TTAATTATATTTTTTTG
3924085 TT
1 TT
3924087 TACAGTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (17 bp):
TTAATTATATTTTTTTG
Found at i:3924255 original size:26 final size:27
Alignment explanation
Indices: 3924200--3924259 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
3924190 ATTATTTTTT
*
3924200 TTAATTTAAATTTATAATGAATTTATA
1 TTAATTTAAATTTATAATGAATGTATA
*
3924227 TTAATTATAAATTT-TTAT-AATGTATA
1 TTAATT-TAAATTTATAATGAATGTATA
3924253 TT-ATTTA
1 TTAATTTA
3924260 GGAAACTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.07
25 3 0.10
26 9 0.30
27 9 0.30
28 7 0.23
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (27 bp):
TTAATTTAAATTTATAATGAATGTATA
Found at i:3926433 original size:34 final size:33
Alignment explanation
Indices: 3926389--3926483 Score: 120
Period size: 36 Copynumber: 2.8 Consensus size: 33
3926379 GTAGGAGATT
*
3926389 CTTAGGGTTCGAGAGAATACTTAGGTAAC-ATATC
1 CTTAGTGTTCGAGAGAA-AC-TAGGTAACTATATC
*
3926423 CTTAGTGTTCGAGAGAAACTAGGGAGGAACTATATC
1 CTTAGTGTTCGAGAGAAACTA--G-GTAACTATATC
3926459 CTTAGTGTTCGAGAGAAACTAGGTA
1 CTTAGTGTTCGAGAGAAACTAGGTA
3926484 GTAACTAGGC
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
32 2 0.04
33 4 0.07
34 18 0.33
35 4 0.07
36 26 0.48
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (33 bp):
CTTAGTGTTCGAGAGAAACTAGGTAACTATATC
Found at i:3926464 original size:36 final size:36
Alignment explanation
Indices: 3926418--3926490 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
3926408 CTTAGGTAAC
3926418 ATATCCTTAGTGTTCGAGAGAAACTAGGGAGGAACT
1 ATATCCTTAGTGTTCGAGAGAAACTAGGGAGGAACT
* *
3926454 ATATCCTTAGTGTTCGAGAGAAACTAGGTAGTAACT
1 ATATCCTTAGTGTTCGAGAGAAACTAGGGAGGAACT
3926490 A
1 A
3926491 GGCCTAATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (36 bp):
ATATCCTTAGTGTTCGAGAGAAACTAGGGAGGAACT
Found at i:3933108 original size:21 final size:21
Alignment explanation
Indices: 3933084--3933152 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
3933074 CCATCTTCGT
*
3933084 AGGGTTACATTCCTAGCCCTC
1 AGGGTTACATTCCTAGCCCCC
*
3933105 AGGGTTACATTTCTAGCCCGCC
1 AGGGTTACATTCCTAGCCC-CC
* * *
3933127 A-GGTTATATGCCTAGCCCGC
1 AGGGTTACATTCCTAGCCCCC
3933147 AGGGTT
1 AGGGTT
3933153 TTATGACACT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.28
Consensus pattern (21 bp):
AGGGTTACATTCCTAGCCCCC
Found at i:3933704 original size:34 final size:34
Alignment explanation
Indices: 3933661--3933733 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
3933651 TTAAATGTTT
* *
3933661 TTAATATACAAATTATAGTATTCGAAATTTAAAA
1 TTAAAATACAAATTATAGTATTCAAAATTTAAAA
* *
3933695 TTAAAATACAAATTATGGTATTCAAAATTTAACA
1 TTAAAATACAAATTATAGTATTCAAAATTTAAAA
3933729 TTAAA
1 TTAAA
3933734 TTCAACTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (34 bp):
TTAAAATACAAATTATAGTATTCAAAATTTAAAA
Found at i:3934027 original size:63 final size:63
Alignment explanation
Indices: 3933923--3934050 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 63
3933913 TTTCAATGTC
* *
3933923 ACAACCAACTTATCACTTCACATTTATTCAATTTATCCATAACATTTTATCCAATATATTCAA
1 ACAACCAACTGATCACTTCACATTTATTCAATTTATCCATAACATGTTATCCAATATATTCAA
* * *
3933986 ACAACCAACTGATCACTTCACATTTATTCAATTTATTCATAACATGTTATCTAATTTATTCAA
1 ACAACCAACTGATCACTTCACATTTATTCAATTTATCCATAACATGTTATCCAATATATTCAA
3934049 AC
1 AC
3934051 TTCACATAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.38
Consensus pattern (63 bp):
ACAACCAACTGATCACTTCACATTTATTCAATTTATCCATAACATGTTATCCAATATATTCAA
Found at i:3934035 original size:23 final size:22
Alignment explanation
Indices: 3934005--3934047 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
3933995 TGATCACTTC
3934005 ACATTTAT-TCAATTTATTCATA
1 ACATTTATCT-AATTTATTCATA
3934027 ACATGTTATCTAATTTATTCA
1 ACAT-TTATCTAATTTATTCA
3934048 AACTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (22 bp):
ACATTTATCTAATTTATTCATA
Found at i:3934528 original size:137 final size:138
Alignment explanation
Indices: 3934188--3934671 Score: 785
Period size: 138 Copynumber: 3.5 Consensus size: 138
3934178 CTATAGTTTT
* *
3934188 CCGGAGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCG
1 CCGGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTAACAAAATAATGGAAGGCG
* * * *
3934253 TGCCCCCGGTAACGTGCTTTCACCACTTTGCCAAGTCCCCT-AAGAAATAATAGGTACTGACATA
66 CGCCCCCGGGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAA-AAATAATAGGTACTGACATG
3934317 AATAGTTCC
130 AATAGTTCC
*
3934326 CCGGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAATGGAAGGCG
1 CCGGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTAACAAAATAATGGAAGGCG
* * *
3934391 CGCCCCCGGGAACGCGCTTTCACCACTTTGCCAAGTTCACTCAAAAATAATAGGTATTGACATGA
66 CGCCCCCGGGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGA
3934456 ATAGTT-C
131 ATAGTTCC
*
3934463 CCGGGGGATATGAGTGACATAATAGGGCAATGATAACATATTCTCTAACAAAATAATGGAAGGCG
1 CCGGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTAACAAAATAATGGAAGGCG
* * * *
3934528 CGCCCCCGGGAACACGCTTTCATCACTTTGTCAAGTCCCCTCAGAAATAATAGGTACTGACATGA
66 CGCCCCCGGGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGA
3934593 ATAGTTCC
131 ATAGTTCC
*
3934601 CCGGGGGAAATGAGTGACATAATAGGGCATATGATAACATATTCTCTAACAAAATAATGGAAGGC
1 CCGGGGGACATGAGTGACATAATAGGGCA-ATGATAACATATTCTCTAACAAAATAATGGAAGGC
3934666 GC-CCCC
65 GCGCCCC
3934672 TAGGAATGCG
Statistics
Matches: 325, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
137 128 0.39
138 158 0.49
139 39 0.12
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (138 bp):
CCGGGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTAACAAAATAATGGAAGGCG
CGCCCCCGGGAACGCGCTTTCACCACTTTGCCAAGTCCCCTCAAAAATAATAGGTACTGACATGA
ATAGTTCC
Found at i:3937224 original size:21 final size:21
Alignment explanation
Indices: 3937200--3937270 Score: 53
Period size: 22 Copynumber: 3.5 Consensus size: 21
3937190 AAAAATTATT
3937200 TTAAAATATTTATTTAATATA
1 TTAAAATATTTATTTAATATA
*
3937221 TTAATTAATA-TTATTTATTATA
1 TTAA--AATATTTATTTAATATA
* *
3937243 -AAAAATTAATTA-TTAAT-T-
1 TTAAAA-TATTTATTTAATATA
3937261 TTAAAATATT
1 TTAAAATATT
3937271 ATAATAATTC
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
18 3 0.08
19 7 0.17
20 6 0.15
21 9 0.22
22 11 0.28
23 4 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTAAAATATTTATTTAATATA
Found at i:3937271 original size:21 final size:21
Alignment explanation
Indices: 3937230--3937271 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
3937220 ATTAATTAAT
*
3937230 ATTATTTATTATAAAAAATTA
1 ATTATTAATTATAAAAAATTA
* *
3937251 ATTATTAATTTTAAAATATTA
1 ATTATTAATTATAAAAAATTA
3937272 TAATAATTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTAATTATAAAAAATTA
Found at i:3938944 original size:16 final size:16
Alignment explanation
Indices: 3938906--3938947 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
3938896 AAATCACCAT
3938906 ATTTTTAT-ATGTTAA
1 ATTTTTATAATGTTAA
3938921 ATTCTTTATAAT-TCTAA
1 ATT-TTTATAATGT-TAA
3938938 ATTTTTATAA
1 ATTTTTATAA
3938948 ATTAAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.12
16 13 0.54
17 8 0.33
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTTTTATAATGTTAA
Found at i:3950276 original size:16 final size:17
Alignment explanation
Indices: 3950251--3950284 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3950241 CCGAGGTGTC
3950251 ACATTGACTTTT-CAAA
1 ACATTGACTTTTACAAA
*
3950267 ACATTTACTTTTACAAA
1 ACATTGACTTTTACAAA
3950284 A
1 A
3950285 GAACTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (17 bp):
ACATTGACTTTTACAAA
Found at i:3951015 original size:44 final size:44
Alignment explanation
Indices: 3950967--3951052 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
3950957 CATCTCGTAA
* * *
3950967 TTTGCACCTAAGTGCCATATAAATGTCCCGAATGACCACATAGG
1 TTTGCACCGAAATGCCACATAAATGTCCCGAATGACCACATAGG
* **
3951011 TTTGCACCGAAATGTCACATATTTGTCCCGAATGACCACATA
1 TTTGCACCGAAATGCCACATAAATGTCCCGAATGACCACATA
3951053 TTTGTCCCGA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
TTTGCACCGAAATGCCACATAAATGTCCCGAATGACCACATAGG
Found at i:3951041 original size:21 final size:22
Alignment explanation
Indices: 3950990--3951073 Score: 88
Period size: 21 Copynumber: 3.9 Consensus size: 22
3950980 GCCATATAAA
3950990 TGTCCCG-AATGACCACATAGGTT
1 TGTCCCGAAATGACCACATA--TT
*
3951013 TG-CACCGAAATG-TCACATATT
1 TGTC-CCGAAATGACCACATATT
3951034 TGTCCCG-AATGACCACATATT
1 TGTCCCGAAATGACCACATATT
*
3951055 TGTCCCG-AAGGACCACATA
1 TGTCCCGAAATGACCACATA
3951074 AAACCATCGA
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
20 4 0.07
21 33 0.61
22 2 0.04
23 11 0.20
24 4 0.07
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (22 bp):
TGTCCCGAAATGACCACATATT
Found at i:3953014 original size:27 final size:27
Alignment explanation
Indices: 3952983--3953050 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
3952973 TCTATTTACA
3952983 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
3953010 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
3953037 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
3953051 ATTCCTACAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.22
27 32 0.78
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:3956759 original size:27 final size:27
Alignment explanation
Indices: 3956728--3956795 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
3956718 TCTATTTACA
3956728 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
3956755 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
3956782 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
3956796 ATTCCTACAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.22
27 32 0.78
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:3958667 original size:25 final size:26
Alignment explanation
Indices: 3958617--3958667 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
3958607 AGAAACCTGT
*
3958617 CCCTAGCACAAGATCAAAATGAAACC
1 CCCTAGCACAAGATCAAAAAGAAACC
*
3958643 CCCT-GCACAA-ACTCAAAAAGCAACC
1 CCCTAGCACAAGA-TCAAAAAGAAACC
3958668 GTATGGTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 1 0.05
25 17 0.77
26 4 0.18
ACGTcount: A:0.45, C:0.35, G:0.10, T:0.10
Consensus pattern (26 bp):
CCCTAGCACAAGATCAAAAAGAAACC
Found at i:3959448 original size:25 final size:25
Alignment explanation
Indices: 3959401--3959448 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
3959391 AGAACCACCA
*
3959401 CATCTTATGCAACATTCATTAAACT
1 CATCTTATGCAACATTCAATAAACT
*
3959426 CATCTTATGCAACATTTAATAAA
1 CATCTTATGCAACATTCAATAAA
3959449 GCTTAATGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (25 bp):
CATCTTATGCAACATTCAATAAACT
Found at i:3959970 original size:3 final size:3
Alignment explanation
Indices: 3959962--3960041 Score: 72
Period size: 3 Copynumber: 26.0 Consensus size: 3
3959952 AATATTATAC
* * * *
3959962 TTA TTA TTA TTA ATA TTA ATA TTA ATA TTA ATA TTGA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* *
3960007 TTA TTA TTTA TTA TTA ATA TTAA TTA GTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TT-A TTA TTA TTA TTA
3960042 CACTGTTTTG
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
2 1 0.02
3 53 0.87
4 7 0.11
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:3959978 original size:12 final size:12
Alignment explanation
Indices: 3959963--3960041 Score: 90
Period size: 12 Copynumber: 6.7 Consensus size: 12
3959953 ATATTATACT
3959963 TATTATTATTAA
1 TATTATTATTAA
*
3959975 TATTAATATTAA
1 TATTATTATTAA
* *
3959987 TATTAATATTGA
1 TATTATTATTAA
*
3959999 TATTATTATTAT
1 TATTATTATTAA
3960011 TATTTATTATTAA
1 TA-TTATTATTAA
*
3960024 TATTA--ATTAG
1 TATTATTATTAA
3960034 TATTATTA
1 TATTATTA
3960042 CACTGTTTTG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
10 9 0.16
12 37 0.65
13 11 0.19
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:3966756 original size:27 final size:27
Alignment explanation
Indices: 3966721--3966817 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 27
3966711 CTTATCCATC
3966721 AGAAAAAAAGAAGAAAGAAAAGAAAGA
1 AGAAAAAAAGAAGAAAGAAAAGAAAGA
* *
3966748 AGAAAAAAAGAAAAAAAGAAAAGAAAAA
1 AGAAAAAAAG-AAGAAAGAAAAGAAAGA
*
3966776 AGAAAAGAAAAAAGAAAAGAAAAGAAAAGA
1 AGAAAA-AAAGAAG-AAAGAAAAG-AAAGA
*
3966806 AAAGAAAAAAGA
1 AGA-AAAAAAGA
3966818 GATGAAAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
27 10 0.17
28 23 0.40
29 12 0.21
30 10 0.17
31 3 0.05
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (27 bp):
AGAAAAAAAGAAGAAAGAAAAGAAAGA
Found at i:3966836 original size:12 final size:12
Alignment explanation
Indices: 3966724--3966836 Score: 124
Period size: 12 Copynumber: 9.2 Consensus size: 12
3966714 ATCCATCAGA
3966724 AAAAAAGAAGAA-
1 AAAAAAGAA-AAG
*
3966736 AGAAAAG-AAAG
1 AAAAAAGAAAAG
*
3966747 AAGAAA-AAAAG
1 AAAAAAGAAAAG
3966758 AAAAAAAGAAAAG
1 -AAAAAAGAAAAG
3966771 AAAAAAGAAAAG
1 AAAAAAGAAAAG
3966783 AAAAAAGAAAAG
1 AAAAAAGAAAAG
3966795 AAAAGAAAAGAAAAG
1 --AA-AAAAGAAAAG
* *
3966810 AAAAAAGAGATG
1 AAAAAAGAAAAG
3966822 AAAAAAGAAAAG
1 AAAAAAGAAAAG
3966834 AAA
1 AAA
3966837 TTGAATCAAG
Statistics
Matches: 86, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
10 2 0.02
11 9 0.10
12 56 0.65
13 7 0.08
14 2 0.02
15 10 0.12
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.01
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:3968403 original size:52 final size:52
Alignment explanation
Indices: 3968336--3968479 Score: 227
Period size: 52 Copynumber: 2.8 Consensus size: 52
3968326 GGTCCATATT
*
3968336 ATCCATGT-GGGTATCTTGAAGGCTCACATAAGCATGAAAAAGATAGAAGTA
1 ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAAAGATAGAAGTA
* *
3968387 ATCCATATGGGGTATCTTGAAGGTTCACATCAGCATGAAAAAGATAGAAGTA
1 ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAAAGATAGAAGTA
* * *
3968439 ATCCATGTGAGGCATCTTGAAGGCTCACACCAGCATGAAAA
1 ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAA
3968480 TGTTGTAATA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
51 7 0.08
52 77 0.92
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (52 bp):
ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAAAGATAGAAGTA
Found at i:3970198 original size:16 final size:16
Alignment explanation
Indices: 3970179--3970216 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
3970169 TTGATTCTAT
3970179 TCAACTCGATAACATA
1 TCAACTCGATAACATA
3970195 TCAACTCGATAACATA
1 TCAACTCGATAACATA
*
3970211 TAAACT
1 TCAACT
3970217 GCATTGTAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (16 bp):
TCAACTCGATAACATA
Found at i:3970886 original size:46 final size:44
Alignment explanation
Indices: 3970836--3971131 Score: 206
Period size: 46 Copynumber: 6.8 Consensus size: 44
3970826 TCCTTGATAA
* *
3970836 CCAGAACTCTTCATCACGTGTGAGTCGTGTTATCACCTTTAGATG
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCACCTTT-GATG
*
3970881 CCCAGAACTCTTCATCACGTATGAGTCATGTCATCACC--TGA--
1 -CCAGAACTCTTCATCACGTATGAGTCGTGTCATCACCTTTGATG
* * * * * * *
3970922 CCTGATCTCCTCATCATGTAGGAGCCGTGTCA--ATCC-TTGATAA
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCA-CCTTTGAT-G
* * *
3970965 CCAGAACTCTTCATCACATATGAGTCGTGTTATCACATTTAGATGG
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCACCTTT-GAT-G
*
3971011 CCAGAACTCTTCATCACGTATGAATCGTGTCATCACC--TGA--
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCACCTTTGATG
** * * * * * *
3971051 CTTGATCTCCCTCATCATGTAAGAGTTGTGTCA--ATCC-TTGATAA
1 CCAGAACT-CTTCATCACGTATGAGTCGTGTCATCA-CCTTTGAT-G
*
3971095 CCAGAACTCTTCATCACGTATGAGTCGTGTTATCACC
1 CCAGAACTCTTCATCACGTATGAGTCGTGTCATCACC
3971132 CTTCCTAAAG
Statistics
Matches: 192, Mismatches: 41, Indels: 36
0.71 0.15 0.13
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 35 0.18
41 22 0.11
43 47 0.24
44 10 0.05
45 4 0.02
46 70 0.36
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (44 bp):
CCAGAACTCTTCATCACGTATGAGTCGTGTCATCACCTTTGATG
Found at i:3970897 original size:129 final size:129
Alignment explanation
Indices: 3970764--3971393 Score: 569
Period size: 129 Copynumber: 4.8 Consensus size: 129
3970754 TGACGTTCTC
* * * ** *
3970764 CATCACGTAGGAA-CTGTGTCATCACCCGACCTGATCTTCTCATCGCGTAGGAGCCATGTCAATC
1 CATCACGTATGAATC-GTGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATC
*
3970828 CTTGATAACCAGAACTCTTCATCACGTGTGAGTCGTGTTATCACCTTTAGATGCCCAGAACTCTT
65 CTTGATAACCAGAACTCTTCATCACGTATGAGTCGTGTTATCACCTTTAGATGCCCAGAACTCTT
* *
3970893 CATCACGTATGAGTCATGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCC
1 CATCACGTATGAATCGTGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCC
* * *
3970958 TTGATAACCAGAACTCTTCATCACATATGAGTCGTGTTATCACATTTAGATGGCCAGAACTCTT
66 TTGATAACCAGAACTCTTCATCACGTATGAGTCGTGTTATCACCTTTAGATGCCCAGAACTCTT
* * **
3971022 CATCACGTATGAATCGTGTCATCACCTGACTTGATCTCCCTCATCATGTAAGAGTTGTGTCAATC
1 CATCACGTATGAATCGTGTCATCACCTGACCTGATCT-CCTCATCATGTAGGAGCCGTGTCAATC
** *
3971087 CTTGATAACCAGAACTCTTCATCACGTATGAGTCGTGTTATCACCCTTCCTAAAGATGGCAAATA
65 CTTGATAACCAGAACTCTTCATCACGTATGAGTCGTGTTATCA-CCTT--T--AGAT-GCCCAGA
3971152 ACTCTT
124 ACTCTT
* * * * * * **
3971158 CATCACGTATG-AGCAGTGTCATTACCAGA-CTAGATTTCCTCTTTATGTAGGAGCTATGTCAA-
1 CATCACGTATGAATC-GTGTCATCACCTGACCT-GATCTCCTCATCATGTAGGAGCCGTGTCAAT
** * * * * * *
3971220 CCCAGATAACCAG-TCGTCCTCATCACGTAGGA-ACTGAGTTATCACCCTTCCTAAAGATGGCCA
64 CCTTGATAACCAGAAC-TCTTCATCACGTATGAGTC-GTGTTATCA-CCTT--T--AGAT-GCCC
*
3971283 AGAAATCTT
121 AGAACTCTT
* * * * * * *
3971292 CATCACGTATG-AGCAGTGTCATC-CCTTAACTAGATCTTCTCATTATGTAGGAGTCTTGTC-A-
1 CATCACGTATGAATC-GTGTCATCACCTGACCT-GATCTCCTCATCATGTAGGAGCCGTGTCAAT
** * *
3971353 CCTTTAGACGATCAGAACTCTTCAACACGTATGAGTCGTGT
64 CC-TT-GATAACCAGAACTCTTCATCACGTATGAGTCGTGT
3971394 CGTCTCCCAA
Statistics
Matches: 420, Mismatches: 64, Indels: 28
0.82 0.12 0.05
Matches are distributed among these distances:
129 149 0.35
130 67 0.16
131 3 0.01
133 9 0.02
134 105 0.25
135 49 0.12
136 38 0.09
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (129 bp):
CATCACGTATGAATCGTGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCC
TTGATAACCAGAACTCTTCATCACGTATGAGTCGTGTTATCACCTTTAGATGCCCAGAACTCTT
Found at i:3971560 original size:3 final size:3
Alignment explanation
Indices: 3971552--3971616 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
3971542 AATATTATAC
* *
3971552 TTA TTA TTA TTA ATA TTA ATA TTGA -TA TTA TTA TTA TTTA TTA TTCA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA -TTA TTA TT-A
*
3971599 -TA TTAA TTA GTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA
3971617 CACTTTTTGC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
2 2 0.04
3 40 0.80
4 8 0.16
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:3973667 original size:2 final size:2
Alignment explanation
Indices: 3973660--3973694 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
3973650 ACTTTTTATT
3973660 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3973695 AATGTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:3977195 original size:11 final size:11
Alignment explanation
Indices: 3977179--3977207 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
3977169 CATGGCAAGT
3977179 GAAATGGTTGA
1 GAAATGGTTGA
3977190 GAAATGGTTGA
1 GAAATGGTTGA
3977201 GAAATGG
1 GAAATGG
3977208 AGAGCAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.24
Consensus pattern (11 bp):
GAAATGGTTGA
Found at i:3978341 original size:12 final size:12
Alignment explanation
Indices: 3978324--3978422 Score: 82
Period size: 12 Copynumber: 8.2 Consensus size: 12
3978314 ATCCATCAGA
3978324 AAAAAAAGAAAG
1 AAAAAAAGAAAG
*
3978336 AAAAAAATAAAG
1 AAAAAAAGAAAG
3978348 AAAAAAA-AGAAG
1 AAAAAAAGA-AAG
3978360 AAAAAAAAGAAA-
1 -AAAAAAAGAAAG
3978372 AGAAAAAAGAAA-
1 A-AAAAAAGAAAG
* *
3978384 AGAAAAGGAAAG
1 AAAAAAAGAAAG
*
3978396 -AAAAAAGAGATG
1 AAAAAAAGA-AAG
3978408 -AAAAAAGAAAAG
1 AAAAAAAG-AAAG
3978420 AAA
1 AAA
3978423 TTGAATCAAG
Statistics
Matches: 72, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
11 16 0.22
12 43 0.60
13 12 0.17
14 1 0.01
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:3978356 original size:21 final size:21
Alignment explanation
Indices: 3978326--3978418 Score: 84
Period size: 21 Copynumber: 4.2 Consensus size: 21
3978316 CCATCAGAAA
3978326 AAAAAGAAAGAA-AAAAATAAAG
1 AAAAA-AAAGAAGAAAAA-AAAG
3978348 AAAAAAAAGAAGAAAAAAAAG
1 AAAAAAAAGAAGAAAAAAAAG
3978369 AAAAGAAAA-AAGAAAAGAAAAGG
1 AAAA-AAAAGAAGAAAA-AAAA-G
*
3978392 AAAGAAAAA-AGAGATGAAAAAAG
1 AAA-AAAAAGA-AGA-AAAAAAAG
3978415 AAAA
1 AAAA
3978419 GAAATTGAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 14
0.81 0.01 0.18
Matches are distributed among these distances:
21 21 0.33
22 19 0.30
23 13 0.21
24 8 0.13
25 2 0.03
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (21 bp):
AAAAAAAAGAAGAAAAAAAAG
Found at i:3978360 original size:24 final size:23
Alignment explanation
Indices: 3978321--3978422 Score: 100
Period size: 24 Copynumber: 4.2 Consensus size: 23
3978311 CTTATCCATC
3978321 AGAAAAAAAAGAAAGAAAAAAATAA
1 AGAAAAAAAAG-AAGAAAAAAA-AA
3978346 AGAAAAAAAAGAAGAAAAAAAAGA
1 AGAAAAAAAAGAAGAAAAAAAA-A
*
3978370 A-AAGAAAAAAGAA-AAGAAAAGGAA
1 AGAA-AAAAAAGAAGAA-AAAA-AAA
* *
3978394 AGAAAAAAGAGATGAAAAAAGAAA
1 AGAAAAAAAAGAAGAAAAAA-AAA
3978418 AGAAA
1 AGAAA
3978423 TTGAATCAAG
Statistics
Matches: 67, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
23 5 0.07
24 46 0.69
25 16 0.24
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (23 bp):
AGAAAAAAAAGAAGAAAAAAAAA
Found at i:3978390 original size:34 final size:33
Alignment explanation
Indices: 3978324--3978422 Score: 121
Period size: 34 Copynumber: 2.9 Consensus size: 33
3978314 ATCCATCAGA
3978324 AAAAAAAGAAAGAAAA-AAATAAAGAAAA-AAAAG
1 AAAAAAA-AAAGAAAAGAAA-AAAGAAAAGAAAAG
3978357 AAGAAAAAAAAGAAAAGAAAAAAGAAAAGAAAAGG
1 AA-AAAAAAAAGAAAAGAAAAAAGAAAAGAAAA-G
* * *
3978392 AAAGAAAAAAGAGATGAAAAAAGAAAAGAAA
1 AAAAAAAAAAGAAAAGAAAAAAGAAAAGAAA
3978423 TTGAATCAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
33 18 0.31
34 38 0.64
35 3 0.05
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (33 bp):
AAAAAAAAAAGAAAAGAAAAAAGAAAAGAAAAG
Found at i:3980065 original size:52 final size:52
Alignment explanation
Indices: 3979924--3980067 Score: 227
Period size: 52 Copynumber: 2.8 Consensus size: 52
3979914 GGTCCATATT
*
3979924 ATCCATGT-GGGTATCTTGAAGGCTCACATAAGCATGAAAAAGATAGAAGTA
1 ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAAAGATAGAAGTA
* *
3979975 ATCCATATGGGGTATCTTGAAGGTTCACATCAGCATGAAAAAGATAGAAGTA
1 ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAAAGATAGAAGTA
* * *
3980027 ATCCATGTGGGGCATCTTGAAGGCTCACACCAGTATGAAAA
1 ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAA
3980068 TGTTGTAATA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
51 7 0.08
52 77 0.92
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (52 bp):
ATCCATGTGGGGTATCTTGAAGGCTCACATCAGCATGAAAAAGATAGAAGTA
Found at i:3982485 original size:46 final size:44
Alignment explanation
Indices: 3982395--3982625 Score: 190
Period size: 46 Copynumber: 5.3 Consensus size: 44
3982385 CTGATCTTTC
* **
3982395 TCATCGCGTATGAGCCATGTCA--ATCCTTGATAACCAGAACTCT
1 TCATCACGTATGAGCCATGTCATCA-CCTTGATGGCCAGAACTCT
* *
3982438 TCATCACGTGTGAGCCATGTTATCACCTTGAGATGGCCAGAACTCT
1 TCATCACGTATGAGCCATGTCATCACCTT--GATGGCCAGAACTCT
* * * *
3982484 TCATCACGTATGAGTCATGTCATCACC-TGA---CCTGATCTCC
1 TCATCACGTATGAGCCATGTCATCACCTTGATGGCCAGAACTCT
* * * **
3982524 TCATCATGTAGGAGCCGTGTCA--ATCCTTGATAACCAGAACTCT
1 TCATCACGTATGAGCCATGTCATCA-CCTTGATGGCCAGAACTCT
* * * *
3982567 TCATCACATATGAGTCATGTTATCACATTTAGATGGCCAGAACTCT
1 TCATCACGTATGAGCCATGTCATCAC-CTT-GATGGCCAGAACTCT
3982613 TCATCACGTATGA
1 TCATCACGTATGA
3982626 ATCGTATCAT
Statistics
Matches: 147, Mismatches: 28, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
38 1 0.01
39 2 0.01
40 28 0.19
43 44 0.30
44 5 0.03
45 5 0.03
46 62 0.42
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (44 bp):
TCATCACGTATGAGCCATGTCATCACCTTGATGGCCAGAACTCT
Found at i:3982558 original size:129 final size:129
Alignment explanation
Indices: 3982371--3982931 Score: 530
Period size: 129 Copynumber: 4.3 Consensus size: 129
3982361 GTAGGAACCG
* * ** * *
3982371 TGTCATCACCCGACCTGATCTTTCTCATCGCGTATGAGCCATGTCAATCCTTGATAACCAGAACT
1 TGTCATCACCTGACCTGATC-TCCTCATCATGTAGGAGCCGTGTCAATCCTTGATAACCAGAACT
* *
3982436 CTTCATCACGTGTGAGCCATGTTATCACCTTGAGATGGCCAGAACTCTTCATCACGTATGAGTCA
65 CTTCATCACGTGTGAGTCATGTTATCACCTTAAGATGGCCAGAACTCTTCATCACGTATGAGTCA
3982501 TGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCCTTGATAACCAGAACTC
1 TGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCCTTGATAACCAGAACTC
* * * * * *
3982566 TTCATCACATATGAGTCATGTTATCACATTTAGATGGCCAGAACTCTTCATCACGTATGAATCG
66 TTCATCACGTGTGAGTCATGTTATCACCTTAAGATGGCCAGAACTCTTCATCACGTATGAGTCA
* * * **
3982630 TATCATCACCTGACTTGATCTCCTCATCATGTAAGAGTTGTGTCAATCCTTGATAACCAGAACTC
1 TGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCCTTGATAACCAGAACTC
* * *
3982695 TTCATCACGTGTGAGTCGTGTTATCACCCTTCCTAAAGATGGCAAATAACTCTTCATCACGTATG
66 TTCATCACGTGTGAGTCATGTTATCA-CC-T--T-AAGATGGC-CAGAACTCTTCATCACGTATG
3982760 AG-CA
125 AGTCA
* * * * * * ** *
3982764 GTGTCATTACCAGA-CTAGATTTCCTCTTTATGTAGGAG-CTTCGTCAA-CCCAGATAACCAG-T
1 -TGTCATCACCTGACCT-GATCTCCTCATCATGTAGGAGCCGT-GTCAATCCTTGATAACCAGAA
* * *
3982825 CGTCCTCATCACGTAG-GAACTGA-GTTATCACCCTTCCTAAAGATGGCCAAGAACTCTTCATCA
63 C-TCTTCATCACGT-GTG-AGTCATGTTATCA-CC-T--T-AAGATGGCC-AGAACTCTTCATCA
3982888 CGTATGAG-CA
119 CGTATGAGTCA
* *
3982898 GTGTCATC-CCTTGA-CTAGATCTTCTCATTATGTA
1 -TGTCATCACC-TGACCT-GATCTCCTCATCATGTA
3982932 AGAGTCTTGT
Statistics
Matches: 366, Mismatches: 51, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
129 180 0.49
130 20 0.05
131 1 0.00
133 4 0.01
134 106 0.29
135 55 0.15
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (129 bp):
TGTCATCACCTGACCTGATCTCCTCATCATGTAGGAGCCGTGTCAATCCTTGATAACCAGAACTC
TTCATCACGTGTGAGTCATGTTATCACCTTAAGATGGCCAGAACTCTTCATCACGTATGAGTCA
Found at i:3983151 original size:3 final size:3
Alignment explanation
Indices: 3983143--3983207 Score: 60
Period size: 3 Copynumber: 21.0 Consensus size: 3
3983133 AATATTATAC
* *
3983143 TTA TTA TTA TTA ATA TTA ATA TTGA -TA TTA TTA TTA TTTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA -TTA TTA TTA
* *
3983189 ATA TTAA TTA GTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA
3983208 CACTTTTTGC
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
2 1 0.02
3 42 0.84
4 7 0.14
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:3987605 original size:36 final size:36
Alignment explanation
Indices: 3987538--3987607 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
3987528 TCTTAGGTCC
* * ** *
3987538 ATAAGGAATTACTAGCTTGATCGGTGTTGAACCTAT
1 ATAAGGAATTACCAGCTTAATCGAAGCTGAACCTAT
3987574 ATAAGGAATTACCAGCTTAATCGAAGCTGAACCT
1 ATAAGGAATTACCAGCTTAATCGAAGCTGAACCT
3987608 GCAGAGACTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (36 bp):
ATAAGGAATTACCAGCTTAATCGAAGCTGAACCTAT
Found at i:3988774 original size:405 final size:405
Alignment explanation
Indices: 3988023--3988775 Score: 1166
Period size: 405 Copynumber: 1.9 Consensus size: 405
3988013 ACTGTACAGT
* * * * * * *
3988023 AAACTGAGTATTTAACAAAGTTTTAGAACTATACGGGTAATCATAGGTTCTCGCAATTGAGAGGA
1 AAACTGAGTATTGAACAAAGTTGTAGAACTATACGGGTAATCACAAGCTCTCGCAATCGAGAGAA
* ** *
3988088 TTGAAAGGAAACGGGTCGAGCAGATGAACGATTAGGAGATCCATAAATACCCTAAATATAAAATA
66 TTGAAAGGAAACGGGTCGAGAAGACAAACGATTAGGAGATCCACAAATACCCTAAATATAAAATA
** * *
3988153 ACATAAATTAGTCCTTGGTCGTTAAATTAAAAATACTTAATTAAATTACGTATGCATGTTCGAGT
131 ACATAAATTAGTCCTTGACCCTTAAATTAAAAATACTTAATTAAATTACATATGCATGTTCGAGT
3988218 TTAATGGTCAATTCGGAGGCTTTCGGGTTCAAATTTGGCAAAAACAAACTTCGGATTCAGACTCA
196 TTAATGGTCAATTCGGAGGCTTTCGGGTTCAAATTTGGCAAAAACAAACTTCGGATTCAGACTCA
*
3988283 AGATGTCAAAAACCATAAAATATGAATTTTCAAAAATTTTGACTTTTTTGTCAAAGTCAACGGTC
261 AGATGTCAAAAAACATAAAATATGAATTTTCAAAAATTTTGACTTTTTTGTCAAAGTCAACGGTC
3988348 AAATTGGTCAAAGATCAAAGTCAGAGTCAACAAGTCTGGTCAACAGTCATAACATAACATAATTA
326 AAATTGGTCAAAGATCAAAGTCAGAGTCAACAAGTCTGGTCAACAGTCATAACATAACATAATTA
3988413 CTATCAGAGTAGTAC
391 CTATCAGAGTAGTAC
* * **
3988428 AAACTGAGTATTGAACAGAGTTGTAGGACTATACGGGTAATCACAAGCTCTCGCGGTCGAGCA-A
1 AAACTGAGTATTGAACAAAGTTGTAGAACTATACGGGTAATCACAAGCTCTCGCAATCGAG-AGA
* * * * **
3988492 ATTGAGAGGAAACGGGTCGAGAAGACAAACGATTAGGAGATCCACGAGTACCTTAAATATGCAAT
65 ATTGAAAGGAAACGGGTCGAGAAGACAAACGATTAGGAGATCCACAAATACCCTAAATATAAAAT
* *
3988557 AACATAAATTAGTCCTTGACCCTTAAATTAAAAGTACTTAATTAAATTACATATGCATGTTCGTG
130 AACATAAATTAGTCCTTGACCCTTAAATTAAAAATACTTAATTAAATTACATATGCATGTTCGAG
* * * * *
3988622 TTTAATGGTCAATTCGGAGGCTTTTGGGTTCGAATTTGGCAAAAACAGACTTCGGATTCGGAGTC
195 TTTAATGGTCAATTCGGAGGCTTTCGGGTTCAAATTTGGCAAAAACAAACTTCGGATTCAGACTC
* * *
3988687 AAGATGTTAAAAAACATAAAATATGACTTTTCAAAAATTTTGACTTTTTTGTCAAAGTTAACGGT
260 AAGATGTCAAAAAACATAAAATATGAATTTTCAAAAATTTTGACTTTTTTGTCAAAGTCAACGGT
3988752 CAAATTGGTCAAAGATCAAAGTCA
325 CAAATTGGTCAAAGATCAAAGTCA
3988776 ATGGGTTTGG
Statistics
Matches: 311, Mismatches: 36, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
405 310 1.00
406 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (405 bp):
AAACTGAGTATTGAACAAAGTTGTAGAACTATACGGGTAATCACAAGCTCTCGCAATCGAGAGAA
TTGAAAGGAAACGGGTCGAGAAGACAAACGATTAGGAGATCCACAAATACCCTAAATATAAAATA
ACATAAATTAGTCCTTGACCCTTAAATTAAAAATACTTAATTAAATTACATATGCATGTTCGAGT
TTAATGGTCAATTCGGAGGCTTTCGGGTTCAAATTTGGCAAAAACAAACTTCGGATTCAGACTCA
AGATGTCAAAAAACATAAAATATGAATTTTCAAAAATTTTGACTTTTTTGTCAAAGTCAACGGTC
AAATTGGTCAAAGATCAAAGTCAGAGTCAACAAGTCTGGTCAACAGTCATAACATAACATAATTA
CTATCAGAGTAGTAC
Found at i:3988925 original size:17 final size:17
Alignment explanation
Indices: 3988903--3988936 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
3988893 GAACTGGTTC
3988903 TAGGAGGTTCCAAAACT
1 TAGGAGGTTCCAAAACT
3988920 TAGGAGGTTCCAAAACT
1 TAGGAGGTTCCAAAACT
3988937 GGGGAGGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (17 bp):
TAGGAGGTTCCAAAACT
Found at i:3988942 original size:17 final size:17
Alignment explanation
Indices: 3988904--3988943 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
3988894 AACTGGTTCT
*
3988904 AGGAGGTTCCAAAACTT
1 AGGAGGTTCCAAAACTG
3988921 AGGAGGTTCCAAAACTG
1 AGGAGGTTCCAAAACTG
*
3988938 GGGAGG
1 AGGAGG
3988944 AGTCCCACGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.35, T:0.17
Consensus pattern (17 bp):
AGGAGGTTCCAAAACTG
Found at i:3994029 original size:21 final size:23
Alignment explanation
Indices: 3993988--3994029 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
3993978 GTTACGGCTT
3993988 CAAACCCCCACAATCCCTAAATC
1 CAAACCCCCACAATCCCTAAATC
*
3994011 CAAACCTCCA-AAT-CCTAAA
1 CAAACCCCCACAATCCCTAAA
3994030 CACCAACATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 3 0.17
23 9 0.50
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (23 bp):
CAAACCCCCACAATCCCTAAATC
Found at i:3994035 original size:22 final size:23
Alignment explanation
Indices: 3993988--3994035 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
3993978 GTTACGGCTT
*
3993988 CAAACCCCCACAATCCCTAAATC
1 CAAACCCCCACAATCCCTAAAAC
*
3994011 CAAACCTCCA-AAT-CCTAAACAC
1 CAAACCCCCACAATCCCTAAA-AC
3994033 CAA
1 CAA
3994036 CATCCATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 6 0.27
22 7 0.32
23 9 0.41
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (23 bp):
CAAACCCCCACAATCCCTAAAAC
Found at i:3995884 original size:2 final size:2
Alignment explanation
Indices: 3995877--3995916 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
3995867 ACATATACAA
3995877 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3995917 GTGTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3995921 original size:2 final size:2
Alignment explanation
Indices: 3995916--3995940 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3995906 TATATATATA
3995916 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
3995941 ATTTGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:4008088 original size:21 final size:21
Alignment explanation
Indices: 4008064--4008119 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
4008054 ACAAAACCTA
4008064 CTGAAAATTCTACAATCACTG
1 CTGAAAATTCTACAATCACTG
*
4008085 CTGAAAATCCTACAATCACTG
1 CTGAAAATTCTACAATCACTG
4008106 CTG-AAATTCCTACA
1 CTGAAAATT-CTACA
4008120 GCCACTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 4 0.12
21 28 0.88
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.27
Consensus pattern (21 bp):
CTGAAAATTCTACAATCACTG
Found at i:4008125 original size:21 final size:21
Alignment explanation
Indices: 4008064--4008126 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
4008054 ACAAAACCTA
* *
4008064 CTGAAAATTCTACAATCACTG
1 CTGAAAATCCTACAACCACTG
*
4008085 CTGAAAATCCTACAATCACTG
1 CTGAAAATCCTACAACCACTG
* *
4008106 CTGAAATTCCTACAGCCACTG
1 CTGAAAATCCTACAACCACTG
4008127 TAATTCCTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.25
Consensus pattern (21 bp):
CTGAAAATCCTACAACCACTG
Found at i:4017986 original size:26 final size:26
Alignment explanation
Indices: 4017956--4018007 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
4017946 CAAAACCAGG
4017956 AAGAAAGAGTAAAAATATGGGAGTTT
1 AAGAAAGAGTAAAAATATGGGAGTTT
4017982 AAGAAAGAGTAAAAATATGGGAGTTT
1 AAGAAAGAGTAAAAATATGGGAGTTT
4018008 TGTCCCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (26 bp):
AAGAAAGAGTAAAAATATGGGAGTTT
Found at i:4019734 original size:39 final size:39
Alignment explanation
Indices: 4019691--4019913 Score: 230
Period size: 39 Copynumber: 5.8 Consensus size: 39
4019681 TTTTTAAAAA
*
4019691 AAAACACATATATAATATATAGTTTTTAAAAACGTTTTG
1 AAAATACATATATAATATATAGTTTTTAAAAACGTTTTG
* * *
4019730 -AAA-ACTTATATAATATATAGTTTTGAAAATA-TTTTTG
1 AAAATACATATATAATATATAGTTTTTAAAA-ACGTTTTG
** *
4019767 AAAATATTTATATATTATATAGTTTTTAAAAACGTTTTG
1 AAAATACATATATAATATATAGTTTTTAAAAACGTTTTG
* * *
4019806 AAAATATATATA-AATATATAGTTTTTTAAAGACATTTTTG
1 AAAATACATATATAATATATAG-TTTTTAAAAAC-GTTTTG
*
4019846 AAAA-A-ATATATATTATATAGTTTTT-AAAACGTTTTTTG
1 AAAATACATATATAATATATAGTTTTTAAAAACG--TTTTG
*
4019884 AAAATAC--GTATAATATATAGTTTTTAAAAA
1 AAAATACATATATAATATATAGTTTTTAAAAA
4019914 AATATTTCAG
Statistics
Matches: 156, Mismatches: 16, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
37 33 0.21
38 51 0.33
39 63 0.40
40 9 0.06
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.44
Consensus pattern (39 bp):
AAAATACATATATAATATATAGTTTTTAAAAACGTTTTG
Found at i:4019767 original size:12 final size:12
Alignment explanation
Indices: 4019750--4019775 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4019740 TAATATATAG
4019750 TTTTGAAAATAT
1 TTTTGAAAATAT
4019762 TTTTGAAAATAT
1 TTTTGAAAATAT
4019774 TT
1 TT
4019776 ATATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (12 bp):
TTTTGAAAATAT
Found at i:4019868 original size:77 final size:74
Alignment explanation
Indices: 4019698--4019952 Score: 291
Period size: 76 Copynumber: 3.4 Consensus size: 74
4019688 AAAAAAACAC
* * *
4019698 ATATATAATATATAGTTTTTAAAAACGTTTTGAAAACT-TATATAATATATAGTTTTGAAAATAT
1 ATATATATTATATAGTTTTTAAAAACGTTTTGAAAA-TATATATAATATATAGTTTTTAAAAAAT
4019762 TTTTGAAAATA
65 TTTTGAAAA-A
*
4019773 TTTATATATTATATAGTTTTTAAAAACGTTTTGAAAATATATATAAATATATAGTTTTTTAAAGA
1 -ATATATATTATATAGTTTTTAAAAACGTTTTGAAAATATATAT-AATATATAG-TTTTTAAA-A
*
4019838 CATTTTTGAAAAA
62 AATTTTTGAAAAA
**
4019851 ATATATATTATATAGTTTTT-AAAACGTTTTTTGAAAATACGTATAATATATAGTTTTTAAAAAA
1 ATATATATTATATAGTTTTTAAAAACG--TTTTGAAAATATATATAATATATAGTTTTT-AAAAA
* * *
4019915 ATATTTCAGAAAT
63 ATTTTTGA-AAAA
* *
4019928 TTATATATTATAT-GTTTTTGAAAAC
1 ATATATATTATATAGTTTTTAAAAAC
4019953 ATTTATATAT
Statistics
Matches: 158, Mismatches: 12, Indels: 17
0.84 0.06 0.09
Matches are distributed among these distances:
75 1 0.01
76 63 0.40
77 60 0.38
78 22 0.14
79 12 0.08
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (74 bp):
ATATATATTATATAGTTTTTAAAAACGTTTTGAAAATATATATAATATATAGTTTTTAAAAAATT
TTTGAAAAA
Found at i:4019980 original size:3 final size:3
Alignment explanation
Indices: 4019972--4020031 Score: 84
Period size: 3 Copynumber: 19.3 Consensus size: 3
4019962 TATAATATAG
*
4019972 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TATT TCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT
*
4020019 TAT AAT TAT TAT T
1 TAT TAT TAT TAT T
4020032 TATGTTTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
3 46 0.88
4 6 0.12
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4020766 original size:22 final size:22
Alignment explanation
Indices: 4020728--4020770 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4020718 TTTTGTCCTT
*
4020728 CCGGCCACCTAGCACCGCCGTG
1 CCGGCCACCTAGAACCGCCGTG
4020750 CCGGCCACCGT-GAACCGCCGT
1 CCGGCCACC-TAGAACCGCCGT
4020771 ATGCAGTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.14, C:0.49, G:0.28, T:0.09
Consensus pattern (22 bp):
CCGGCCACCTAGAACCGCCGTG
Found at i:4021229 original size:43 final size:45
Alignment explanation
Indices: 4021179--4021279 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 45
4021169 TAATTTTGTT
* * * *
4021179 TTTTATTTTATTTTACCTTGTTTTTATTATCATTCTTA-TCTTTA
1 TTTTATTTTATTTTACCCTCTTTTAATTAACATTCTTATTCTTTA
* *
4021223 -TTTA-TTTATTTTTCCCTCTTTTAATTAACATTTTTATTTCTTTA
1 TTTTATTTTATTTTACCCTCTTTTAATTAACATTCTTA-TTCTTTA
4021267 TTATTATTTTATT
1 TT-TTATTTTATT
4021280 ACTTTCTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
42 26 0.57
43 4 0.09
44 6 0.13
45 1 0.02
46 3 0.07
47 6 0.13
ACGTcount: A:0.20, C:0.11, G:0.01, T:0.68
Consensus pattern (45 bp):
TTTTATTTTATTTTACCCTCTTTTAATTAACATTCTTATTCTTTA
Found at i:4026921 original size:84 final size:84
Alignment explanation
Indices: 4026623--4026921 Score: 333
Period size: 84 Copynumber: 3.6 Consensus size: 84
4026613 GCTCAAGACA
* * *
4026623 AGAAGGGTTATTTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC-CAAGGCACATCAT
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTCTCAAGGCATATCAT
* *
4026687 TTGCAGCATAGCTTAAGTCG
65 TTGCAGCATAACTTAAGTCT
* ** * *
4026707 AGAAGGGCTATCTG---CCAAAGACCCCCGAGTTCGATTACACTCAGCT-TCGAGGGCATATCAT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCTC-AAGGCATATCAT
* *
4026768 TTACAGCATAACTCAA-TGCT
65 TTGCAGCATAACTTAAGT-CT
* *
4026788 AGAAGGGTTATCTGTCACCAAAGATCTTCGAGTTCGACTACACTCAGCTCTC-AGGCATATCATT
1 AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCTCAAGGCATATCATT
* *
4026852 TGCAACACAACTTAAGTCT
66 TGCAGCATAACTTAAGTCT
* * * *
4026871 AGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTC
1 AGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
4026922 AACTCTCAGG
Statistics
Matches: 178, Mismatches: 28, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
80 30 0.17
81 37 0.21
83 38 0.21
84 71 0.40
85 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (84 bp):
AGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGACTACACTCAGCTCTCAAGGCATATCATT
TGCAGCATAACTTAAGTCT
Found at i:4030808 original size:3 final size:3
Alignment explanation
Indices: 4030800--4030834 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4030790 TTAATTATAC
4030800 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
4030835 ATTTTACAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4030984 original size:15 final size:15
Alignment explanation
Indices: 4030964--4030994 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4030954 GACTCGCCAG
*
4030964 CCACTAGATATGCGT
1 CCACTAGAGATGCGT
4030979 CCACTAGAGATGCGT
1 CCACTAGAGATGCGT
4030994 C
1 C
4030995 TGTGCTTCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (15 bp):
CCACTAGAGATGCGT
Found at i:4033506 original size:18 final size:19
Alignment explanation
Indices: 4033485--4033521 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
4033475 TTTTTAATCC
4033485 CTTGTTTGT-TTTGAATTT
1 CTTGTTTGTATTTGAATTT
*
4033503 CTTGTTTGTATTTTAATTT
1 CTTGTTTGTATTTGAATTT
4033522 GTAATTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.14, C:0.05, G:0.14, T:0.68
Consensus pattern (19 bp):
CTTGTTTGTATTTGAATTT
Found at i:4034432 original size:21 final size:21
Alignment explanation
Indices: 4034408--4034463 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
4034398 CAAAACCGGG
4034408 AGACATGAAGACCATTCATAA
1 AGACATGAAGACCATTCATAA
* *
4034429 AGACATAAAGACCCTTCATAA
1 AGACATGAAGACCATTCATAA
4034450 AGACATGAAGACCA
1 AGACATGAAGACCA
4034464 CTTCGCATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.16
Consensus pattern (21 bp):
AGACATGAAGACCATTCATAA
Found at i:4038575 original size:123 final size:124
Alignment explanation
Indices: 4038353--4038724 Score: 498
Period size: 125 Copynumber: 3.0 Consensus size: 124
4038343 AAGTTAGGAT
* * *
4038353 ATATTGGGGCACGACTGAACCCACATCATGTTGAGATGATAAGATTCAGACCAATGAGGCATGAA
1 ATATTGGGGCATGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAAGAGGCATGAA
* * *
4038418 GAATGATCCTTACAATTTGAAGTGATGGGACATTTTGAAGGCCGTA-CGGTATAAGTTA
66 GAATGATCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCGTACCAGTATAAGTTA
* * * *
4038476 ATATTGGGGCATAACTGAACCCACATCATATTGAGATGACAAAATTCAGACCAAAGAGGCGTGAA
1 ATATTGGGGCATGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAAGAGGCATGAA
* *
4038541 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCACGTACCAGTATAAGGTA
66 GAATGATCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGC-CGTACCAGTATAAGTTA
* * * * *
4038601 ATGTTGGGGCGTGACTAAACCCACATCATGTTGAGATGACAAGATACAGACC-AAGAAGGCCTTG
1 ATATTGGGGCATGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAAG-AGG-CATG
* * * *
4038665 -AGAATAATCCTTACAATTTGAGGTGTTGTGGAATTTTGAAGGCCCGTACCAGTATAAGTT
64 AAGAATGATCCTTACAATTTGAGGTGATGGGGCATTTTGAAGG-CCGTACCAGTATAAGTT
4038725 GACGTTGTGG
Statistics
Matches: 218, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
123 97 0.44
124 7 0.03
125 110 0.50
126 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (124 bp):
ATATTGGGGCATGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAAGAGGCATGAA
GAATGATCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCGTACCAGTATAAGTTA
Found at i:4040045 original size:37 final size:37
Alignment explanation
Indices: 4039993--4040151 Score: 198
Period size: 37 Copynumber: 4.3 Consensus size: 37
4039983 ATGAGATTGG
* *
4039993 AGCAAAGTCAATCTTAAGCCTTCACTGAAGAGTAGTGA
1 AGCAAA-TCCATCTTAAGCCTTCACCGAAGAGTAGTGA
* *
4040031 AGCAAATCCATCTTAATCCTTCACCAAAGAGTAGTGA
1 AGCAAATCCATCTTAAGCCTTCACCGAAGAGTAGTGA
*
4040068 AGCAAA-CCATCTTAAGTCTTCACCGAAGAGTAGTGA
1 AGCAAATCCATCTTAAGCCTTCACCGAAGAGTAGTGA
* * * *
4040104 AGCAAATCCATTTTAAGCCTTCTCAGAAGAGT-GTTGG
1 AGCAAATCCATCTTAAGCCTTCACCGAAGAGTAG-TGA
4040141 AGCAAA-CCATC
1 AGCAAATCCATC
4040152 AAATTATCAG
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
36 38 0.36
37 62 0.58
38 6 0.06
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (37 bp):
AGCAAATCCATCTTAAGCCTTCACCGAAGAGTAGTGA
Found at i:4040090 original size:73 final size:73
Alignment explanation
Indices: 4040003--4040151 Score: 212
Period size: 73 Copynumber: 2.0 Consensus size: 73
4039993 AGCAAAGTCA
* *
4040003 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCCATCTTAATCCTTCACCA-AAGAGTAG-T
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTC-CCAGAAGAGT-GTT
4040066 GAAGCAAACC
64 GAAGCAAACC
* * * *
4040076 ATCTTAAGTCTTCACCGAAGAGTAGTGAAGCAAATCCATTTTAAGCCTTCTCAGAAGAGTGTTGG
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCCCAGAAGAGTGTTGA
4040141 AGCAAACC
66 AGCAAACC
4040149 ATC
1 ATC
4040152 AAATTATCAG
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 3 0.04
73 65 0.96
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (73 bp):
ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCCCAGAAGAGTGTTGA
AGCAAACC
Found at i:4040589 original size:54 final size:54
Alignment explanation
Indices: 4040530--4040793 Score: 332
Period size: 54 Copynumber: 4.9 Consensus size: 54
4040520 ATGAAGCAAG
*
4040530 AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCATAAGA
1 AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGA
* * * * **
4040584 AGAAGATGTTTGAGTTCCATACTTCCTAGAGAAAGAGGGAACGAACTCGTTTGA
1 AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGA
* * * * ** *
4040638 AGAAGATGTTCGAGTTCTATACTCCCTAGATAAAGAGAGAGCAAACCCGTTTGT
1 AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGA
* * *
4040692 AGAAGATGTCCGAGTTCTATACTCCCT-GAAGAAAGAGGGAGTGAACCCGTAAGA
1 AGAAGATGTTCGAGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTAAGA
* * *
4040746 AGAAGATGTTCGAGTTTCATACTTCTTAGAGAAAGAGGGAGCGAACCC
1 AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCC
4040794 ATTTGTTGAA
Statistics
Matches: 178, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 176 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (54 bp):
AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGA
Found at i:4040725 original size:108 final size:108
Alignment explanation
Indices: 4040530--4040834 Score: 355
Period size: 108 Copynumber: 2.8 Consensus size: 108
4040520 ATGAAGCAAG
* ** *
4040530 AGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCATAAGAAGAAGATGTTT
1 AGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGTAGAAGATGTTT
* * * **
4040595 GAGTTCCATACTTCCT-AGAGAAAGAGGGAACGAACTCGTTTGA
66 GAGTTCTATACTCCCTGA-AGAAAGAGGGAACGAACCCGTAAGA
* * * * **
4040638 AGAAGATGTTCGAGTTCTATACTCCCTAGATAAAGAGAGAGCAAACCCGTTTGTAGAAGATGTCC
1 AGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGTAGAAGATGTTT
**
4040703 GAGTTCTATACTCCCTGAAGAAAGAGGGAGTGAACCCGTAAGA
66 GAGTTCTATACTCCCTGAAGAAAGAGGGAACGAACCCGTAAGA
* * * *
4040746 AGAAGATGTTCGAGTT-TCATACTTCTTAGAGAAAGAGGGAGCGAACCCATTTGTTGAAAATTGT
1 AGAAGATGTTCGAGTTCT-ATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGTAGAAGA-TGT
*
4040810 TTGAG-TCTTATACTCTCTGAAGAAA
64 TTGAGTTC-TATACTCCCTGAAGAAA
4040835 TAAGGAGCAG
Statistics
Matches: 165, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
107 1 0.01
108 141 0.85
109 23 0.14
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (108 bp):
AGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCATTTGTAGAAGATGTTT
GAGTTCTATACTCCCTGAAGAAAGAGGGAACGAACCCGTAAGA
Found at i:4040934 original size:54 final size:54
Alignment explanation
Indices: 4040797--4041370 Score: 483
Period size: 55 Copynumber: 10.9 Consensus size: 54
4040787 CGAACCCATT
* * * *
4040797 TGTTGAAAATTGTTTGAGTCTTATACTCTCTGAAGAAATAAGGAGCAGACACAA
1 TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
** * *
4040851 TTGTTGAAGATTACTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAAACACGA
1 -TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
* * *
4040906 TGTTGAACATTGTTTGAGTCTTATACTCTCTGAAGAAATAGAGAGCAGACACGA
1 TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
* * *
4040960 TTGCTGAAGATTGTTCGAGTC-TATACTCTCTGAAGAAATAGAGAGCAGACACTA
1 -TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
* * *
4041014 TTATTGAAGATTGTTCGAGTC-T-TACTCTCTGAAGAAATAGGGAGCATATACGA
1 -TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
* *
4041067 TTATTGAA-ATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGTAGACAC--
1 -TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
* * *
4041119 -------GATTGTTCGAGCCTTATACTCTCTGAAGAAAGAGGGAGCAGACACGTT
1 TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACG-A
** ** * * *
4041167 TGTTGAAGGCTGTTTAAGTCCTATACTCTCTGAAGGAATAGGGAGC-GAACACGTT
1 TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAG-ACACG-A
* * * *
4041222 TGTTGAAGA----TCGAGTCCTATACTCTCTGAAGGAATAGAGAGCAGACACGTT
1 TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACG-A
* * * * * *
4041273 TGTT-AA-A--GATCGAGTCCTATACTCTCTGAAGGAATAGGGAAC-GAACCCGT
1 TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAG-ACACGA
* * * * * * *
4041323 TTTATGAAGATTGTTTGAGTTTTACACTCCCTGAAGCAAGAGGGAGCA
1 TGT-TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCA
4041371 AACCCGCTGG
Statistics
Matches: 438, Mismatches: 56, Indels: 49
0.81 0.10 0.09
Matches are distributed among these distances:
45 41 0.09
49 1 0.00
50 6 0.01
51 77 0.18
52 15 0.03
53 37 0.08
54 126 0.29
55 135 0.31
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (54 bp):
TGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGA
Found at i:4041164 original size:45 final size:45
Alignment explanation
Indices: 4041075--4041170 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 45
4041065 GATTATTGAA
* * *
4041075 ATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGTAGACACG
1 ATTGTTCGAGCCTTATACTCTCTGAAGAAAGAGGGAGCAGACACG
4041120 ATTGTTCGAGCCTTATACTCTCTGAAGAAAGAGGGAGCAGACACG
1 ATTGTTCGAGCCTTATACTCTCTGAAGAAAGAGGGAGCAGACACG
*
4041165 TTTGTT
1 ATTGTT
4041171 GAAGGCTGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (45 bp):
ATTGTTCGAGCCTTATACTCTCTGAAGAAAGAGGGAGCAGACACG
Found at i:4041256 original size:51 final size:51
Alignment explanation
Indices: 4040812--4041312 Score: 382
Period size: 54 Copynumber: 9.6 Consensus size: 51
4040802 AAAATTGTTT
* * **
4040812 GAGTCTTATACTCTCTGAAGAAATAAGGAGCAGACACAATTGTTGAAGATTACTC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTGAAG---A-TC
* * * * * *
4040867 GAGTCTTATACTCTCTGAAGGAATAGGGAGCAAACACG-ATGTTGAACATTGTTT
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTG-A-A--GATC
* * * *
4040921 GAGTCTTATACTCTCTGAAGAAATAGAGAGCAGACACGATTGCTGAAGATTGTTC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTGAAGA----TC
* *
4040976 GAGT-CTATACTCTCTGAAGAAATAGAGAGCAGACAC-TATTATTGAAGATTGTTC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGT-TTGTTGAAGA----TC
* * * * *
4041030 GAGT-CT-TACTCTCTGAAGAAATAGGGAGCATATACGATTATTGAAATTGTTC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTG-AA--GATC
* * *
4041082 GAGTCTTATACTCTCTGAAGAAATAGGGAGTAGACACGATTG-T-----TC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTGAAGATC
* *
4041127 GAG-CCTTATACTCTCTGAAGAAAGAGGGAGCAGACACGTTTGTTGAAG-GC
1 GAGTCC-TATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTGAAGATC
*
4041177 TGTTTAAGTCCTATACTCTCTGAAGGAATAGGGAGC-GAACACGTTTGTTGAAGATC
1 -G----AGTCCTATACTCTCTGAAGAAATAGGGAGCAG-ACACGTTTGTTGAAGATC
* * *
4041233 GAGTCCTATACTCTCTGAAGGAATAGAGAGCAGACACGTTTGTTAAAGATC
1 GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTGAAGATC
*
4041284 GAGTCCTATACTCTCTGAAGGAATAGGGA
1 GAGTCCTATACTCTCTGAAGAAATAGGGA
4041313 ACGAACCCGT
Statistics
Matches: 376, Mismatches: 39, Indels: 66
0.78 0.08 0.14
Matches are distributed among these distances:
44 1 0.00
45 38 0.10
46 1 0.00
50 1 0.00
51 76 0.20
52 7 0.02
53 35 0.09
54 126 0.34
55 85 0.23
56 5 0.01
58 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (51 bp):
GAGTCCTATACTCTCTGAAGAAATAGGGAGCAGACACGTTTGTTGAAGATC
Found at i:4041258 original size:151 final size:150
Alignment explanation
Indices: 4040968--4041276 Score: 374
Period size: 151 Copynumber: 2.0 Consensus size: 150
4040958 GATTGCTGAA
* * * *
4040968 GATTGTTCGAGTCTATACTCTCTGAAGAAATAGAGAGCAGACACTATTATTGAAGATTGTTCGAG
1 GATTGTTCGAGCCTATACTCTCTGAAGAAAGAGAGAGCAGACACTATTATTGAAGACTGTTCAAG
* * *
4041033 TCTTACTCTCTGAAGAAATAGGGAGCATATACGATTATTGAAATTGTTCGAGTCTTATACTCTCT
66 TCTTACTCTCTGAAGAAATAGGGAGCATACACGATTATTGAAA-TGATCGAGTCCTATACTCTCT
* *
4041098 GAAGAAATAGGGAGTAGACAC
130 GAAGAAATAGAGAGCAGACAC
* * * *
4041119 GATTGTTCGAGCCTTATACTCTCTGAAGAAAGAGGGAGCAGACACGT-TTGTTGAAGGCTGTTTA
1 GATTGTTCGAGCC-TATACTCTCTGAAGAAAGAGAGAGCAGACAC-TATTATTGAAGACTGTTCA
* * *
4041183 AGTCCTATACTCTCTGAAGGAATAGGGAGCGA-ACACGTTTGTTG-AA-GATCGAGTCCTATACT
64 AGT-CT-TACTCTCTGAAGAAATAGGGAGC-ATACACGATTATTGAAATGATCGAGTCCTATACT
*
4041245 CTCTGAAGGAATAGAGAGCAGACAC
126 CTCTGAAGAAATAGAGAGCAGACAC
*
4041270 GTTTGTT
1 GATTGTT
4041277 AAAGATCGAG
Statistics
Matches: 135, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
151 54 0.40
152 44 0.33
153 5 0.04
154 31 0.23
155 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (150 bp):
GATTGTTCGAGCCTATACTCTCTGAAGAAAGAGAGAGCAGACACTATTATTGAAGACTGTTCAAG
TCTTACTCTCTGAAGAAATAGGGAGCATACACGATTATTGAAATGATCGAGTCCTATACTCTCTG
AAGAAATAGAGAGCAGACAC
Found at i:4041523 original size:3 final size:3
Alignment explanation
Indices: 4041497--4041536 Score: 53
Period size: 3 Copynumber: 12.7 Consensus size: 3
4041487 ATATTATAAA
*
4041497 TAT TAAT TAT ATAT TAT TAC TAT TAT TAT TAT TAT TAT TA
1 TAT T-AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4041537 ATGTTACATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 27 0.82
4 6 0.18
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:4042931 original size:21 final size:20
Alignment explanation
Indices: 4042891--4042932 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
4042881 GGTCTGCCTT
*
4042891 CATTTTTTTAATTTTGTTTA
1 CATTTTTTTAATTTTATTTA
4042911 CATTTTTTCATAA-TTTATTTA
1 CATTTTTT--TAATTTTATTTA
4042932 C
1 C
4042933 TATTCGAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 8 0.42
22 3 0.16
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (20 bp):
CATTTTTTTAATTTTATTTA
Found at i:4050252 original size:172 final size:166
Alignment explanation
Indices: 4049967--4050305 Score: 592
Period size: 172 Copynumber: 2.0 Consensus size: 166
4049957 TATATTGAAA
4049967 ATTAATCACGTTCAAACATCAAATTAATCTTTAAACTATATTTGAACATAAGTAATTTTCATCAA
1 ATTAATCACGTTCAAACATCAAATTAATCTTTAAACTATATTTGAACATAAGTAATTTTCATCAA
4050032 GAATCATAACTCCCCAACTAATAGCAATGAATGCAATCAAAAAGTACTATT-TAAGCATTTTTCA
66 GAATCATAACTCCCCAACTAATAGCAATGAATGCAATCAAAAAGTACTATTCTAAGCATTTTTCA
4050096 TTTAGTCTTAAAAGTGCT-AAATTATTTTAAACACT
131 TTTAGTCTTAAAAGTGCTAAAATTATTTTAAACACT
4050131 ATTAATCACGTTCAAAAACAATCAAATTAATCTTTAAACTATATTTGAACATAAAGTTAATTTTC
1 ATTAATCACGTTC--AAAC-ATCAAATTAATCTTTAAACTATATTTGAACAT-AAG-TAATTTTC
4050196 ATCAAGAATCATAAACTCCCCCTAACTAATAGCAATGAATGCAATCAAAAAGTACTATTCTAAGC
61 ATCAAGAATCAT-AACT-CCCC-AACTAATAGCAATGAATGCAATCAAAAAGTACTATTCTAAGC
4050261 ATTTTTCATTTAGTCTTAAAAGTGCTAAAATTATTTTAAACACT
123 ATTTTTCATTTAGTCTTAAAAGTGCTAAAATTATTTTAAACACT
4050305 A
1 A
4050306 AGTGAAGATA
Statistics
Matches: 165, Mismatches: 0, Indels: 10
0.94 0.00 0.06
Matches are distributed among these distances:
164 13 0.08
166 4 0.02
167 32 0.19
168 3 0.02
169 20 0.12
170 4 0.02
171 4 0.02
172 36 0.22
173 31 0.19
174 18 0.11
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (166 bp):
ATTAATCACGTTCAAACATCAAATTAATCTTTAAACTATATTTGAACATAAGTAATTTTCATCAA
GAATCATAACTCCCCAACTAATAGCAATGAATGCAATCAAAAAGTACTATTCTAAGCATTTTTCA
TTTAGTCTTAAAAGTGCTAAAATTATTTTAAACACT
Found at i:4055681 original size:19 final size:19
Alignment explanation
Indices: 4055657--4055695 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4055647 TGGAGCGTGG
4055657 GGGGAATCGGTACCCTAAT
1 GGGGAATCGGTACCCTAAT
*
4055676 GGGGAATCGGTCCCCTAAT
1 GGGGAATCGGTACCCTAAT
4055695 G
1 G
4055696 TAAAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (19 bp):
GGGGAATCGGTACCCTAAT
Found at i:4057134 original size:37 final size:36
Alignment explanation
Indices: 4056986--4057277 Score: 320
Period size: 36 Copynumber: 8.0 Consensus size: 36
4056976 TGTTTCGTGA
*
4056986 GAAACTATCTCAAGGGAGAC-AAATTTGTTTCAAGG
1 GAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGG
* * * *
4057021 AAAACTGTCTCAAGGGAGACAAAATTTGTTTCAATG
1 GAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGG
* *
4057057 GAAACTGTCTCAAGAGAGACAAAA-TTGTTTAAAGG
1 GAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGG
*
4057092 GAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGG
1 GAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGG
*
4057128 GAAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGG
1 G-AAACTATCTCAAGAGAGACAAAATTTGTTTCAAGG
* * *
4057165 GAAACTATCTCAAGCGAGATAAAATCTT-TGTTCGAGG
1 GAAACTATCTCAAGAGAGACAAAAT-TTGT-TTCAAGG
* * * * *
4057202 AAAACTATCTCAAAAGAGATAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGAGAGACAAA-ATT-TGTTTCAAGG
* * *
4057240 GAAACTATCTCAAGCGAGATAAATCTTCTGTTTCAAGG
1 GAAACTATCTCAAGAGAGACAAA-ATT-TGTTTCAAGG
4057278 AAAAACAATC
Statistics
Matches: 229, Mismatches: 20, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
35 51 0.22
36 69 0.30
37 65 0.28
38 43 0.19
39 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (36 bp):
GAAACTATCTCAAGAGAGACAAAATTTGTTTCAAGG
Found at i:4057162 original size:21 final size:21
Alignment explanation
Indices: 4057101--4057163 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
4057091 GGAAACTGTC
4057101 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
* *
4057122 TCAAG-G-G--AAAA-CTGTC
1 TCAAGAGAGACAAAATTTGTT
4057138 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
4057159 TCAAG
1 TCAAG
4057164 GGAAACTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
16 8 0.24
17 5 0.15
18 1 0.03
19 1 0.03
20 5 0.15
21 13 0.39
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:4057244 original size:75 final size:74
Alignment explanation
Indices: 4056987--4057281 Score: 320
Period size: 71 Copynumber: 4.0 Consensus size: 74
4056977 GTTTCGTGAG
** * * * *
4056987 AAACTATCTCAAGGGAGAC-AAATTTGTTTCAAGGAAAACTGTCTCAAGGGAGACAAAA--TTTG
1 AAACTATCTCAAAAGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTG
4057049 TTTCAATGG-
66 TTTCAA-GGA
* * * * * *
4057058 AAACTGTCTCAAGAGAGACAAAA-TTGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAA--TTTG
1 AAACTATCTCAAAAGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTG
4057120 TTTCAAGGGA
66 TTTCAA-GGA
* *
4057130 AAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTG
1 AAACTATCTCAAAAGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTG
*
4057195 -TTCGAGGA
66 TTTCAAGGA
* * *
4057203 AAACTATCTCAAAAGAGATAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT-AAATCTT
1 AAACTATCTCAAAAGAGACAAA-ATT-TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTT
4057267 CTGTTTCAAGGA
64 -TGTTTCAAGGA
4057279 AAA
1 AAA
4057282 ACAATCTGAG
Statistics
Matches: 198, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
71 61 0.31
72 26 0.13
73 53 0.27
74 13 0.07
75 35 0.18
76 10 0.05
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (74 bp):
AAACTATCTCAAAAGAGACAAAATTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTG
TTTCAAGGA
Found at i:4057246 original size:38 final size:37
Alignment explanation
Indices: 4056986--4057797 Score: 298
Period size: 40 Copynumber: 21.0 Consensus size: 37
4056976 TGTTTCGTGA
* *
4056986 GAAACTATCTCAAGGGAGACAAA--TTTGTTTCAAGG
1 GAAACTATCTCAAGAGAGATAAATCTTTGTTTCAAGG
* * * * * *
4057021 AAAACTGTCTCAAGGGAGACAAA-ATTTGTTTCAATG
1 GAAACTATCTCAAGAGAGATAAATCTTTGTTTCAAGG
* * * *
4057057 GAAACTGTCTCAAGAGAGACAAA--ATTGTTTAAAGG
1 GAAACTATCTCAAGAGAGATAAATCTTTGTTTCAAGG
* * *
4057092 GAAACTGTCTCAAGAGAGACAAA-ATTTGTTTCAAGG
1 GAAACTATCTCAAGAGAGATAAATCTTTGTTTCAAGG
* * *
4057128 GAAAACTGTCTCAAGAGAGACAAA-ATTTGTTTCAAGG
1 G-AAACTATCTCAAGAGAGATAAATCTTTGTTTCAAGG
* *
4057165 GAAACTATCTCAAGCGAGATAAAATCTTTG-TTCGAGG
1 GAAACTATCTCAAGAGAGAT-AAATCTTTGTTTCAAGG
* * *
4057202 AAAACTATCTCAAAAGAGATAAATCTTCTGTTTCGAGG
1 GAAACTATCTCAAGAGAGATAAATCTT-TGTTTCAAGG
*
4057240 GAAACTATCTCAAGCGAGATAAATCTTCTGTTTCAAGG
1 GAAACTATCTCAAGAGAGATAAATCTT-TGTTTCAAGG
* * * * *
4057278 AAAAACAATCT-GAGCGAGATAAAATCTTCTGTTTAAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* * ** * *
4057317 AAAAACAATCTTGAGTGAGATAAAATC-TTGTTTCAAGA
1 -GAAACTATCTCAAGAGAGAT-AAATCTTTGTTTCAAGG
* ** ** * *
4057355 AAAAAAATCTTGAGTGAGATAAATCTTCTGTTTAAAGG
1 GAAACTATCTCAAGAGAGATAAATCTT-TGTTTCAAGG
* * ** *
4057393 AAAAACAATCTTGAGTGAGATAAAATCTTT-TGTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTTTGT-TTCAAGG
* * ** * *
4057432 AAAAACAATCTTGAGTGAGATAAAATATTTGTTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTTTGTTTCAAGG
* * * ** *
4057471 AAAAACAATATTGAGTGAGATAAAATCTTCTGTTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* * ** *
4057511 AAAAACAATCTTGAGTGAGATGAAATCTTCTGTTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* ** *
4057551 AAAAAACAATCTTGATCTTGAGTGAGATGAAATCTTCTGTTTCAAGG
1 ----GA-AA-C-T-ATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* * ** *
4057598 AAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* * ** *
4057638 AAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* * ** *
4057678 AAAAGCAATCTTGAGTGAGATGAAATCTTCTGTTTCAAGG
1 GAAA-CTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
* * ** *
4057718 AAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGG
1 -GAAACTATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
** *
4057758 AGAAA-TAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGG
1 -GAAACT-ATCTCAAGAGAGAT-AAATCTT-TGTTTCAAGG
4057798 AAAAATGTTT
Statistics
Matches: 704, Mismatches: 46, Indels: 49
0.88 0.06 0.06
Matches are distributed among these distances:
35 53 0.08
36 71 0.10
37 84 0.12
38 70 0.10
39 130 0.18
40 247 0.35
41 4 0.01
42 1 0.00
43 5 0.01
44 5 0.01
45 1 0.00
47 33 0.05
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (37 bp):
GAAACTATCTCAAGAGAGATAAATCTTTGTTTCAAGG
Found at i:4057361 original size:40 final size:40
Alignment explanation
Indices: 4057217--4057802 Score: 868
Period size: 40 Copynumber: 14.7 Consensus size: 40
4057207 TATCTCAAAA
* * * ** *
4057217 GAGAT-AAATCTTCTGTTTCGAGG-GAAACTATCTCAAGC
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057255 GAGAT-AAATCTTCTGTTTCAAGGAAAAACAATC-TGAGC
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057293 GAGATAAAATCTTCTGTTTAAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057333 GAGATAAAATC-T-TGTTTCAA-GAAAAAAAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057370 GAGAT-AAATCTTCTGTTTAAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057409 GAGATAAAATCTTTTG-TTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
4057448 GAGATAAAATATT-TGTTTCAAGGAAAAACAATATTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4057487 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057527 GAGATGAAATCTTCTGTTTCAAGGAAAAAACAATCTTGATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGG-AAAAAC-A-----ATCTTGAGT
*
4057574 GAGATGAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4057614 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057654 GAGATAAAATCTTCTGTTTCAAGGAAAAGCAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4057694 GAGATGAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
4057734 GAGATAAAATCTTCTGTTTCAAGGAGAAATAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4057774 GAGATAAAATCTTCTGTTTCAAGGAAAAA
1 GAGATAAAATCTTCTGTTTCAAGGAAAAA
4057803 TGTTTATTGT
Statistics
Matches: 506, Mismatches: 26, Indels: 30
0.90 0.05 0.05
Matches are distributed among these distances:
36 5 0.01
37 22 0.04
38 46 0.09
39 124 0.25
40 262 0.52
41 6 0.01
42 1 0.00
45 1 0.00
46 6 0.01
47 33 0.07
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (40 bp):
GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
Found at i:4057607 original size:23 final size:23
Alignment explanation
Indices: 4057581--4057649 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
4057571 AGTGAGATGA
4057581 AATCTTCTGTTTCAAGGAAAAAC
1 AATCTTCTGTTTCAAGGAAAAAC
** * *
4057604 AATC-T-TGAGT-GA-G-ATAA-
1 AATCTTCTGTTTCAAGGAAAAAC
4057621 AATCTTCTGTTTCAAGGAAAAAC
1 AATCTTCTGTTTCAAGGAAAAAC
4057644 AATCTT
1 AATCTT
4057650 GAGTGAGATA
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
17 4 0.12
18 4 0.12
19 4 0.12
20 2 0.06
21 4 0.12
22 4 0.12
23 10 0.31
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (23 bp):
AATCTTCTGTTTCAAGGAAAAAC
Found at i:4057760 original size:23 final size:23
Alignment explanation
Indices: 4057734--4057798 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 23
4057724 AATCTTGAGT
4057734 GAGATAAAATCTTCTGTTTCAAG
1 GAGATAAAATCTTCTGTTTCAAG
4057757 GAGA-AATAATC-T-TG-----AG
1 GAGATAA-AATCTTCTGTTTCAAG
4057773 TGAGATAAAATCTTCTGTTTCAAG
1 -GAGATAAAATCTTCTGTTTCAAG
4057797 GA
1 GA
4057799 AAAATGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 20
0.62 0.00 0.38
Matches are distributed among these distances:
16 2 0.06
17 8 0.25
18 3 0.09
19 2 0.06
21 2 0.06
22 3 0.09
23 10 0.31
24 2 0.06
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (23 bp):
GAGATAAAATCTTCTGTTTCAAG
Found at i:4058381 original size:53 final size:52
Alignment explanation
Indices: 4058324--4058488 Score: 119
Period size: 53 Copynumber: 3.1 Consensus size: 52
4058314 CAAAACTGTT
4058324 TCAAAGGTTTCAAAACCTCCCAAAGAAAGTTTCAAAACATTTAGTCTAGAATG
1 TCAAAGGTTTCAAAACCTCCC-AAGAAAGTTTCAAAACATTTAGTCTAGAATG
* ** * *
4058377 TCAAA-ATGAACAATAA-CTAGCTCAAG--AGTTTCGAAACTATTTTAG-C-A-AATTG
1 TCAAAGGT-TTCAA-AACCT--CCCAAGAAAGTTTCAAAAC-A-TTTAGTCTAGAA-TG
* *
4058429 TTTCAAAGGTTTCGAAACCTCCTGAAGAAAGTTTCAAAACATTTAGTCTAGAATG
1 --TCAAAGGTTTCAAAACCTCC-CAAGAAAGTTTCAAAACATTTAGTCTAGAATG
4058484 TCAAA
1 TCAAA
4058489 ATGAACAATA
Statistics
Matches: 83, Mismatches: 12, Indels: 34
0.64 0.09 0.26
Matches are distributed among these distances:
51 2 0.02
52 15 0.18
53 27 0.33
54 21 0.25
55 16 0.19
56 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (52 bp):
TCAAAGGTTTCAAAACCTCCCAAGAAAGTTTCAAAACATTTAGTCTAGAATG
Found at i:4058509 original size:107 final size:108
Alignment explanation
Indices: 4058307--4058520 Score: 376
Period size: 107 Copynumber: 2.0 Consensus size: 108
4058297 TCAATGCCTC
4058307 ATTTTAGCAAAACTGTTTCAAAGGTTTCAAAACCTCCCAAAGAAAGTTTCAAAACATTTAGTCTA
1 ATTTTAGCAAAACTGTTTCAAAGGTTTCAAAACCTCCCAAAGAAAGTTTCAAAACATTTAGTCTA
*
4058372 GAATGTCAAAATGAACAATAACTAGCTCAAGAGTTTCGAAACT
66 GAATGTCAAAATGAACAATAACTAGATCAAGAGTTTCGAAACT
* * **
4058415 ATTTTAGC-AAATTGTTTCAAAGGTTTCGAAACCTCCTGAAGAAAGTTTCAAAACATTTAGTCTA
1 ATTTTAGCAAAACTGTTTCAAAGGTTTCAAAACCTCCCAAAGAAAGTTTCAAAACATTTAGTCTA
4058479 GAATGTCAAAATGAACAATAACTAGATCAAGAGTTTCGAAAC
66 GAATGTCAAAATGAACAATAACTAGATCAAGAGTTTCGAAAC
4058521 CTATAGGGAA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
107 93 0.92
108 8 0.08
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (108 bp):
ATTTTAGCAAAACTGTTTCAAAGGTTTCAAAACCTCCCAAAGAAAGTTTCAAAACATTTAGTCTA
GAATGTCAAAATGAACAATAACTAGATCAAGAGTTTCGAAACT
Found at i:4059007 original size:28 final size:29
Alignment explanation
Indices: 4058965--4059043 Score: 115
Period size: 31 Copynumber: 2.7 Consensus size: 29
4058955 GATGATATAC
4058965 AAATAAGTACCTAAAGTATTTTTT-GTCA
1 AAATAAGTACCTAAAGTATTTTTTGGTCA
*
4058993 AAATAAGTACTTAAAGTTATCTTTTTGGTCA
1 AAATAAGTACCTAAAG-TAT-TTTTTGGTCA
*
4059024 AAATAGGTACCTAAAGTATT
1 AAATAAGTACCTAAAGTATT
4059044 CAATTTTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
28 15 0.33
29 4 0.09
30 8 0.18
31 18 0.40
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (29 bp):
AAATAAGTACCTAAAGTATTTTTTGGTCA
Found at i:4067059 original size:19 final size:19
Alignment explanation
Indices: 4067035--4067073 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4067025 AAAAAGAGAT
*
4067035 AGAGTTCTTTGAAACTCTC
1 AGAGTTCTCTGAAACTCTC
4067054 AGAGTTCTCTGAAACTCTC
1 AGAGTTCTCTGAAACTCTC
4067073 A
1 A
4067074 ACTCTCTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (19 bp):
AGAGTTCTCTGAAACTCTC
Found at i:4067775 original size:29 final size:29
Alignment explanation
Indices: 4067743--4067802 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
4067733 TGGTGGAGTG
*
4067743 GGTGGAAAGAAATATGATAATGGAAGCTT
1 GGTGGAAAGAAATAGGATAATGGAAGCTT
* **
4067772 GGTGGAAAGAAATGGGATGGTGGAAGCTT
1 GGTGGAAAGAAATAGGATAATGGAAGCTT
4067801 GG
1 GG
4067803 GAGGATGGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.35, C:0.03, G:0.40, T:0.22
Consensus pattern (29 bp):
GGTGGAAAGAAATAGGATAATGGAAGCTT
Found at i:4069032 original size:8 final size:8
Alignment explanation
Indices: 4069019--4069044 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
4069009 ATAAATAATC
4069019 AAAATACT
1 AAAATACT
4069027 AAAATACT
1 AAAATACT
4069035 AAAATACT
1 AAAATACT
4069043 AA
1 AA
4069045 GCCTTTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATACT
Found at i:4069411 original size:29 final size:29
Alignment explanation
Indices: 4069375--4069532 Score: 101
Period size: 29 Copynumber: 5.4 Consensus size: 29
4069365 CATTTTACAG
4069375 AAATAGCACCC-TTTCTAAAATAATTAC-CA
1 AAATAGCACCCTTTTC-AAAATAATT-CTCA
*
4069404 AAATAGCACCCTTTTCAAATTAATTCTCA
1 AAATAGCACCCTTTTCAAAATAATTCTCA
* * * *
4069433 AAATAACACCTTTTTC-GAATGAAATTTTCA
1 AAATAGCACCCTTTTCAAAAT--AATTCTCA
* * * *
4069463 AAATAGCA-CATTTTCCGAATTAAATTCCCA
1 AAATAGCACCCTTTT-CAAAAT-AATTCTCA
* * *
4069493 AAATAGCACCCATTTT-GAATTAATTCCCA
1 AAATAGCACCC-TTTTCAAAATAATTCTCA
*
4069522 AAATATCACCC
1 AAATAGCACCC
4069533 GGTCAACGGT
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
28 3 0.03
29 58 0.54
30 39 0.36
31 3 0.03
32 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (29 bp):
AAATAGCACCCTTTTCAAAATAATTCTCA
Found at i:4069466 original size:30 final size:29
Alignment explanation
Indices: 4069402--4069531 Score: 118
Period size: 30 Copynumber: 4.4 Consensus size: 29
4069392 AAATAATTAC
* * *
4069402 CAAAATAGCACCCTTTTCAAATTAATTCT
1 CAAAATAGCACCTTTTTCGAATAAATTCT
* *
4069431 CAAAATAACACCTTTTTCGAATGAAATTTT
1 CAAAATAGCACCTTTTTCGAAT-AAATTCT
* * *
4069461 CAAAATAGCACATTTTCCGAATTAAATTCC
1 CAAAATAGCACCTTTTTCGAA-TAAATTCT
* * *
4069491 CAAAATAGCACCCATTTT-GAATTAATTCC
1 CAAAATAGCA-CCTTTTTCGAATAAATTCT
*
4069520 CAAAATATCACC
1 CAAAATAGCACC
4069532 CGGTCAACGG
Statistics
Matches: 83, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
28 2 0.02
29 35 0.42
30 41 0.49
31 5 0.06
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (29 bp):
CAAAATAGCACCTTTTTCGAATAAATTCT
Found at i:4076757 original size:28 final size:28
Alignment explanation
Indices: 4076675--4076793 Score: 132
Period size: 29 Copynumber: 4.1 Consensus size: 28
4076665 CATTTTATAG
* * * *
4076675 AAATAGTACCCTTTTTAAAATAATTACCA
1 AAATAGCA-CCTTTTTGAATTAATTCCCA
* * *
4076704 AAATATCACCCTTTTTGAGTTAATTCCTA
1 AAATAGCA-CCTTTTTGAATTAATTCCCA
4076733 AAATAGCA-CTTTTTGAATTAAATTCCCA
1 AAATAGCACCTTTTTGAATT-AATTCCCA
4076761 AAATAGCACCTATTTTGAATTAATTCCCA
1 AAATAGCACCT-TTTTGAATTAATTCCCA
4076790 AAAT
1 AAAT
4076794 GTCACTCGGT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
27 10 0.13
28 15 0.19
29 43 0.56
30 9 0.12
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (28 bp):
AAATAGCACCTTTTTGAATTAATTCCCA
Found at i:4076858 original size:23 final size:22
Alignment explanation
Indices: 4076807--4076859 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
4076797 ACTCGGTCAA
* **
4076807 CGGTTAACGGGTCGGGTCGGGT
1 CGGTCAACGGGTCGGGTCGGAC
4076829 CGTGTCAACGGGTCGGGTCGGAAC
1 CG-GTCAACGGGTCGGGTCGG-AC
4076853 CGGTCAA
1 CGGTCAA
4076860 ACCCTTTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 2 0.08
23 22 0.85
24 2 0.08
ACGTcount: A:0.15, C:0.23, G:0.43, T:0.19
Consensus pattern (22 bp):
CGGTCAACGGGTCGGGTCGGAC
Found at i:4077747 original size:91 final size:86
Alignment explanation
Indices: 4077632--4077803 Score: 231
Period size: 91 Copynumber: 1.9 Consensus size: 86
4077622 CGCGGGTTCT
*
4077632 TCTGAAAATGTTGATCTAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTACCTCATT-GA
1 TCTGAAAATGTTGATCCAAGGTTGAACAAGTTC-T-T-ATTATGAACTTTTTCT-CCT--TTAGA
*
4077696 ATGAGTTCTTCTCATTATGAACTCTCA
60 ACGAGTTCTTCTCATTATGAACTCTCA
* *
4077723 TCTGGAAATGTTGATGCCAA-GTTGAACAAGTTCTTATTATGAACTTTTTCTCCTTTAGGACGAG
1 TCTGAAAATGTTGAT-CCAAGGTTGAACAAGTTCTTATTATGAACTTTTTCTCCTTTAGAACGAG
4077787 TTCTTCTCATTATGAAC
65 TTCTTCTCATTATGAAC
4077804 CCTCCATTAG
Statistics
Matches: 75, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
85 2 0.03
86 22 0.29
87 3 0.04
88 16 0.21
89 1 0.01
90 1 0.01
91 27 0.36
92 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (86 bp):
TCTGAAAATGTTGATCCAAGGTTGAACAAGTTCTTATTATGAACTTTTTCTCCTTTAGAACGAGT
TCTTCTCATTATGAACTCTCA
Found at i:4077817 original size:86 final size:90
Alignment explanation
Indices: 4077637--4077819 Score: 236
Period size: 86 Copynumber: 2.1 Consensus size: 90
4077627 GTTCTTCTGA
* *
4077637 AAATGTTGATCTAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTACCTCATTGAATGAGT
1 AAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTACCT-ATTGAACGAGT
* *
4077702 TCTTCTCATTATGAACTCTCATCTGG
65 TCTTCTCATTATGAACCCTCATCTAG
*
4077728 AAATGTTGATGCCAA-GTTGAACAAGTTC-T-T-ATTATGAACTTTTTCT-CCT-TTAGGACGAG
1 AAATGTTGAT-CCAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTACCTATT-GAACGAG
4077787 TTCTTCTCATTATGAACCCTCCAT-TAG
64 TTCTTCTCATTATGAACCCT-CATCTAG
4077814 AAATGT
1 AAATGT
4077820 CAATCCCTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
85 2 0.02
86 32 0.38
87 6 0.07
88 16 0.19
89 1 0.01
90 1 0.01
91 23 0.27
92 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (90 bp):
AAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTACCTATTGAACGAGTT
CTTCTCATTATGAACCCTCATCTAG
Found at i:4077940 original size:138 final size:138
Alignment explanation
Indices: 4077784--4078044 Score: 405
Period size: 138 Copynumber: 1.9 Consensus size: 138
4077774 CCTTTAGGAC
* *
4077784 GAGTTCTTCTCATTATGAACCCTCCATTAGAAATGTCAATCCCTCAAGCGAGGCATCACTGATTT
1 GAGTTCTTCTCATTATGAACCCTCAATTAGAAATGTCAATCCCTCAAGCGAGGCATCACTGATTC
* * *
4077849 AAAATGTTATGAATCGAGTGATAGGTCAAACAAGCTCTTATTATTATGAACTTCTTCTCCATCTG
66 AAAATGATATAAATCGAGTGATAGGTCAAACAAGCTCTTATCATTATGAACTTCTTCTCCATCTG
4077914 TCGAAGAT
131 TCGAAGAT
* * **
4077922 GAGTTCTTCTCATTATGAACTCTCAATTGGAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTC
1 GAGTTCTTCTCATTATGAACCCTCAATTAGAAATGTCAATCCCTCAAGCGAGGCATCACTGATTC
* * * *
4077987 GAAATGATGTAAATCGAGTGATAGGTCTAACAAGCTCTTCTCATTATGAACTTCTTCT
66 AAAATGATATAAATCGAGTGATAGGTCAAACAAGCTCTTATCATTATGAACTTCTTCT
4078045 TTCTCATTGG
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 110 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (138 bp):
GAGTTCTTCTCATTATGAACCCTCAATTAGAAATGTCAATCCCTCAAGCGAGGCATCACTGATTC
AAAATGATATAAATCGAGTGATAGGTCAAACAAGCTCTTATCATTATGAACTTCTTCTCCATCTG
TCGAAGAT
Found at i:4078491 original size:36 final size:35
Alignment explanation
Indices: 4078401--4078494 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 35
4078391 TCTCAAGGGT
** **
4078401 TTTAAGAAAAACCATCTCAAGTGAGATAAATTTTG
1 TTTAAGAAAAACCATCTCAAGCAAGATAAATTAGG
* *
4078436 TTTCAAAGGAAAACTATCTCAAGCAAGATGAAA-TAGG
1 TTT--AAGAAAAACCATCTCAAGCAAGAT-AAATTAGG
4078473 CTTTAAGAAAAACCATCTCAAG
1 -TTTAAGAAAAACCATCTCAAG
4078495 TGAGATTCAA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
35 3 0.06
36 16 0.34
37 22 0.47
38 6 0.13
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (35 bp):
TTTAAGAAAAACCATCTCAAGCAAGATAAATTAGG
Found at i:4078555 original size:76 final size:76
Alignment explanation
Indices: 4078398--4078651 Score: 388
Period size: 76 Copynumber: 3.4 Consensus size: 76
4078388 TTGTCTCAAG
* * * *
4078398 GGTTTTAAGAAAAACCATCTCAAGTGAGA-T-AAATT-TTGTTTCAAAGGAAAACTATCTCAAGC
1 GGTTTTAAGAAAAACCATCTCAAGTGAGATTCAATTTCTTGTTTCAAGGGAAAACTATCTTAAAC
* * * *
4078460 AAGATGAAATA
66 GAGACGAAGTT
*
4078471 GGCTTTAAGAAAAACCATCTCAAGTGAGATTCAATTTCTTGTTTCAAGGGAAAACTATCTTAAAC
1 GGTTTTAAGAAAAACCATCTCAAGTGAGATTCAATTTCTTGTTTCAAGGGAAAACTATCTTAAAC
4078536 GAGACGAAGTT
66 GAGACGAAGTT
4078547 GGTTTTAAGAAAAACCATCTCAAGTGAGATTCAATTTCTTGTTTCAAGGGAAAACTATCTTAAAC
1 GGTTTTAAGAAAAACCATCTCAAGTGAGATTCAATTTCTTGTTTCAAGGGAAAACTATCTTAAAC
4078612 GAGACGAAGTT
66 GAGACGAAGTT
* *
4078623 GGTTTTAAGAAAAACCATCTTAAGAGAGA
1 GGTTTTAAGAAAAACCATCTCAAGTGAGA
4078652 CAAAACTTTG
Statistics
Matches: 166, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
73 28 0.17
74 1 0.01
75 4 0.02
76 133 0.80
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (76 bp):
GGTTTTAAGAAAAACCATCTCAAGTGAGATTCAATTTCTTGTTTCAAGGGAAAACTATCTTAAAC
GAGACGAAGTT
Found at i:4078652 original size:36 final size:36
Alignment explanation
Indices: 4078521--4078645 Score: 117
Period size: 36 Copynumber: 3.4 Consensus size: 36
4078511 GTTTCAAGGG
*
4078521 AAAACTATCTTAAACGAGACGAAGTTGGTTTTAAGA
1 AAAACCATCTTAAACGAGACGAAGTTGGTTTTAAGA
* ** * * * *
4078557 AAAACCATCTCAAGTGAGATTC-AATTTCTTGTTTCAAGGG
1 AAAACCATCTTAAACGAGA--CGAA-GT-TGGTTTTAA-GA
*
4078597 AAAACTATCTTAAACGAGACGAAGTTGGTTTTAAGA
1 AAAACCATCTTAAACGAGACGAAGTTGGTTTTAAGA
4078633 AAAACCATCTTAA
1 AAAACCATCTTAA
4078646 GAGAGACAAA
Statistics
Matches: 66, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
36 28 0.42
37 9 0.14
38 4 0.06
39 9 0.14
40 16 0.24
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (36 bp):
AAAACCATCTTAAACGAGACGAAGTTGGTTTTAAGA
Found at i:4078692 original size:28 final size:29
Alignment explanation
Indices: 4078653--4078710 Score: 100
Period size: 28 Copynumber: 2.0 Consensus size: 29
4078643 TAAGAGAGAC
4078653 AAAACTTTGTTTCAAGAGAAACTATCTCA
1 AAAACTTTGTTTCAAGAGAAACTATCTCA
*
4078682 AAAAC-TTGTTTCAAGAGAAACTGTCTCA
1 AAAACTTTGTTTCAAGAGAAACTATCTCA
4078710 A
1 A
4078711 GGGAGACAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (29 bp):
AAAACTTTGTTTCAAGAGAAACTATCTCA
Found at i:4078738 original size:36 final size:36
Alignment explanation
Indices: 4078682--4079096 Score: 455
Period size: 36 Copynumber: 11.4 Consensus size: 36
4078672 AACTATCTCA
* * *
4078682 AAAACTTGTTTCAAGAGAAACTGTCTCAAGGGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
**
4078718 AAAATTTGTTTCAAGGGAAAC-GT-T-ATCA-A-A-
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
*** * * * * *
4078748 ATTGTGTGTTTCATGAGAAACTATCTCAAGGGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
* *
4078784 AAAATTTGTTTCAAGGAAAACTGTCTCAAGGGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
*
4078820 AAAATTTGTTTCAATGGAAACTGTCTCAAGAGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
*
4078856 AAAATTTGTTTAAAGGGAAACTGTCTCAAGAGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
4078892 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
4078928 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
* * *
4078964 AAAATTTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
* * * *
4079000 AAAATCTTTTGTTTCGAGGGAAACTATCTCAAAAGAGAT
1 AAAA---TTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
* * * *
4079039 AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT
1 AAAA--TT-TGTTTCAAGGGAAACTGTCTCAAGAGAGAC
4079078 AAAATCTTCTGTTTCAAGG
1 AAAA--TT-TGTTTCAAGG
4079097 AAAAACAATC
Statistics
Matches: 329, Mismatches: 40, Indels: 17
0.85 0.10 0.04
Matches are distributed among these distances:
30 15 0.05
31 2 0.01
32 2 0.01
33 2 0.01
34 2 0.01
35 3 0.01
36 222 0.67
38 2 0.01
39 79 0.24
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (36 bp):
AAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
Found at i:4078777 original size:66 final size:64
Alignment explanation
Indices: 4078624--4079033 Score: 248
Period size: 72 Copynumber: 5.9 Consensus size: 64
4078614 GACGAAGTTG
* * * * * * *
4078624 GTTTTAAGAAAAACCATCTTAAGAGAGACAAAACTTTGTTTCAAGAGAAACTATCTCAAAAACTT
1 GTTTCAAGAGAAACTATCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACTATATCAAAAACTT
* **
4078689 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACGT-TATCAAAATTGT
1 GTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGGAAAC-TATATCAAAA-ACT
4078753 GT
64 -T
* * * *
4078755 GTTTCATGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGAAAACTGTCTCAAGGGAGAC
1 GTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATATC-------A-
*
4078820 AAAATTT
58 AAAACTT
* * * * *
4078827 GTTTCAATG-GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGGAAACTGTCTCAAGAGAGA
1 GTTTCAA-GAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATATCAA-A-A-A
4078891 CAAAATTT
62 C-----TT
* * * * *
4078899 GTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
1 GTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATATCAA-A-A-AC
4078964 AAAATTT
63 -----TT
* * * * *
4078971 GTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATCTCAAAA
1 GTTTCAAGAGAAACTATCTCAAGGGAGACAAAA---TTTGTTTCAAGGGAAACTATATCAAAA
4079034 GAGATAAAAT
Statistics
Matches: 292, Mismatches: 28, Indels: 42
0.81 0.08 0.12
Matches are distributed among these distances:
64 24 0.08
65 32 0.11
66 52 0.18
67 1 0.00
71 1 0.00
72 151 0.52
73 4 0.01
74 4 0.01
75 23 0.08
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (64 bp):
GTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTATATCAAAAACTT
Found at i:4079125 original size:40 final size:40
Alignment explanation
Indices: 4079034--4079676 Score: 977
Period size: 40 Copynumber: 16.0 Consensus size: 40
4079024 TATCTCAAAA
* * * ** *
4079034 GAGATAAAATCTTCTGTTTCGAGG-GAAACTATCTCAAGC
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079073 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGC
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* * *
4079113 GAGATAAAATCTTCTATTTAAAGGAAAAACAATATTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079153 GAGATAAAATCTTCTGTTTCAA-GAAAAAAAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079192 GAGATAAAATCTTCTGTTTAAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
4079232 GAGATAAAATCTTTTGTTTTAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* * *
4079272 GAGATAAAATATTTTGTTTCAAGG-AAAACAATATTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4079311 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079351 GAGATGAAATCTTCTGTTTCAAGGAAAAACAATCTTGATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAAC-A-----ATCTTGAGT
* *
4079397 GAGATGAAATCTTCTGTTTCTAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4079437 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079477 GAGATAAAATCTTCTGTTTCAAGGAAAAGCAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
4079517 GAGATTAAATCTTCTATTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
4079557 GAGATAAAATCTTTTGTTTCAAGGAAAAATAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4079597 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079637 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCCTGAGT
1 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
4079677 CAAATGAAAT
Statistics
Matches: 557, Mismatches: 38, Indels: 17
0.91 0.06 0.03
Matches are distributed among these distances:
39 95 0.17
40 422 0.76
41 1 0.00
45 1 0.00
46 38 0.07
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.31
Consensus pattern (40 bp):
GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
Found at i:4079196 original size:119 final size:119
Alignment explanation
Indices: 4079034--4079676 Score: 953
Period size: 119 Copynumber: 5.3 Consensus size: 119
4079024 TATCTCAAAA
* ** * ** *
4079034 GAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCAAGGAA
1 GAGATAAAATCTTCTGTTTCAAGAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAA
* * * *
4079099 AAACAATCTTGAGCGAGATAAAATCTTCTATTTAAAGGAAAAACAATATTGAGT
66 AAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* *
4079153 GAGATAAAATCTTCTGTTTCAAGAAAAAAAATCTTGAGTGAGATAAAATCTTCTGTTTAAAGGAA
1 GAGATAAAATCTTCTGTTTCAAGAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAA
* *
4079218 AAACAATCTTGAGTGAGATAAAATCTTTTGTTTTAAGGAAAAACAATCTTGAGT
66 AAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* * * *
4079272 GAGATAAAATATTTTGTTTCAAGGAAAACAATATTGAGTGAGATAAAATCTTCTGTTTCAAGGAA
1 GAGATAAAATCTTCTGTTTCAAGAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAA
*
4079337 AAACAATCTTGAGTGAGATGAAATCTTCTGTTTCAAGGAAAAACAATCTTGATCTTGAGT
66 AAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAAC-A-----ATCTTGAGT
* *
4079397 GAGATGAAATCTTCTGTTTCTAGGAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGA
1 GAGATAAAATCTTCTGTTTC-AAGAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGA
*
4079462 AAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAGCAATCTTGAGT
65 AAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
* * *
4079517 GAGATTAAATCTTCTATTTCAAGGAAAAACAATCTTGAGTGAGATAAAATCTTTTGTTTCAAGGA
1 GAGATAAAATCTTCTGTTTCAA-GAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGA
*
4079582 AAAATAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
65 AAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
*
4079637 GAGATAAAATCTTCTGTTTCAAGGAAAAACAATCCTGAGT
1 GAGATAAAATCTTCTGTTTCAA-GAAAAACAATCTTGAGT
4079677 CAAATGAAAT
Statistics
Matches: 476, Mismatches: 40, Indels: 15
0.90 0.08 0.03
Matches are distributed among these distances:
119 206 0.43
120 159 0.33
125 27 0.06
126 84 0.18
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.31
Consensus pattern (119 bp):
GAGATAAAATCTTCTGTTTCAAGAAAAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAA
AAACAATCTTGAGTGAGATAAAATCTTCTGTTTCAAGGAAAAACAATCTTGAGT
Found at i:4088654 original size:18 final size:18
Alignment explanation
Indices: 4088611--4088648 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4088601 GTGAAGTATG
*
4088611 AATGGCGTTGTCGTGGCA
1 AATGGTGTTGTCGTGGCA
*
4088629 AATGGTGTTGTTGTGGCA
1 AATGGTGTTGTCGTGGCA
4088647 AA
1 AA
4088649 GTGTGTAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.11, G:0.37, T:0.32
Consensus pattern (18 bp):
AATGGTGTTGTCGTGGCA
Found at i:4092002 original size:117 final size:117
Alignment explanation
Indices: 4091796--4092025 Score: 451
Period size: 117 Copynumber: 2.0 Consensus size: 117
4091786 CCTTCTTATG
4091796 GATCGTTTGAACATATTTGGATCTCCCAACTTTGACTACATGATTAAGAATTTCTTGTCTCATTA
1 GATCGTTTGAACATATTTGGATCTCCCAACTTTGACTACATGATTAAGAATTTCTTGTCTCATTA
*
4091861 TGACCAGCCTTTTTATTAGTCAATCACTTGTGAAGTAACACCTTTGGAGAAT
66 TGACCAGCCTTTTTATTAATCAATCACTTGTGAAGTAACACCTTTGGAGAAT
4091913 GATCGTTTGAACATATTTGGATCTCCCAACTTTGACTACATGATTAAGAATTTCTTGTCTCATTA
1 GATCGTTTGAACATATTTGGATCTCCCAACTTTGACTACATGATTAAGAATTTCTTGTCTCATTA
4091978 TGACCAGCCTTTTTATTAATCAATCACTTGTGAAGTAACACCTTTGGA
66 TGACCAGCCTTTTTATTAATCAATCACTTGTGAAGTAACACCTTTGGA
4092026 TGACATGAAG
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 112 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (117 bp):
GATCGTTTGAACATATTTGGATCTCCCAACTTTGACTACATGATTAAGAATTTCTTGTCTCATTA
TGACCAGCCTTTTTATTAATCAATCACTTGTGAAGTAACACCTTTGGAGAAT
Found at i:4093542 original size:30 final size:28
Alignment explanation
Indices: 4093469--4093548 Score: 88
Period size: 30 Copynumber: 2.8 Consensus size: 28
4093459 CAAACAAAAC
* *
4093469 TTAATGTACTAAAATAATAAAAAGATAGT
1 TTAATG-AATAAAATAGTAAAAAGATAGT
* * *
4093498 TAAAAGATTAAAATAGTAAAAATGATAGTT
1 TTAATGAATAAAATAGTAAAAA-GATAG-T
4093528 TTAATGAATAAAATAGTAAAA
1 TTAATGAATAAAATAGTAAAA
4093549 TAAACATTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 14 0.33
29 9 0.21
30 19 0.45
ACGTcount: A:0.57, C:0.01, G:0.11, T:0.30
Consensus pattern (28 bp):
TTAATGAATAAAATAGTAAAAAGATAGT
Found at i:4093548 original size:29 final size:28
Alignment explanation
Indices: 4093469--4093549 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
4093459 CAAACAAAAC
* * *
4093469 TTAATGTACTAAAATAATAAAAAGATAGT
1 TTAATG-AATAAAATAGTAAAATGATAGT
* * *
4093498 TAAAAGATTAAAATAGTAAAAATGATAGTT
1 TTAATGAATAAAATAGT-AAAATGATAG-T
4093528 TTAATGAATAAAATAGTAAAAT
1 TTAATGAATAAAATAGTAAAAT
4093550 AAACATTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 9 0.21
29 18 0.43
30 15 0.36
ACGTcount: A:0.57, C:0.01, G:0.11, T:0.31
Consensus pattern (28 bp):
TTAATGAATAAAATAGTAAAATGATAGT
Done.