Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007802.1 Hibiscus syriacus cultivar Beakdansim tig00110120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 449556
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 3
Found at i:2440 original size:7 final size:7
Alignment explanation
Indices: 2424--2454 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
2414 GTCAAAGAAA
*
2424 GTCAATG
1 GTCAACG
2431 GTCAACG
1 GTCAACG
2438 GTCAACG
1 GTCAACG
2445 GTCAACG
1 GTCAACG
2452 GTC
1 GTC
2455 GGGTCGGGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (7 bp):
GTCAACG
Found at i:2461 original size:5 final size:5
Alignment explanation
Indices: 2451--2540 Score: 99
Period size: 5 Copynumber: 16.8 Consensus size: 5
2441 AACGGTCAAC
* *
2451 GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC GGTCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G GGTCG
*
2500 GGTCG GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTC
1 GGTCG GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTC
2541 AGACCGGTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
5 61 0.84
7 12 0.16
ACGTcount: A:0.07, C:0.22, G:0.52, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:2470 original size:22 final size:22
Alignment explanation
Indices: 2444--2513 Score: 140
Period size: 22 Copynumber: 3.2 Consensus size: 22
2434 AACGGTCAAC
2444 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
2466 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
2488 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
2510 GGTC
1 GGTC
2514 GGGTCGGGTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.09, C:0.23, G:0.50, T:0.19
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:2488 original size:27 final size:27
Alignment explanation
Indices: 2437--2540 Score: 131
Period size: 27 Copynumber: 3.8 Consensus size: 27
2427 AATGGTCAAC
*
2437 GGTCAACGGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCGGGTCG
*
2466 GGTCAACGGTCGGGTCGGGTCGGGTCAAC
1 GGTCAACGGTCGGGTCGGGTCGGGTC--G
*
2495 GGTC--GGGTCGGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCGGGTCG
2520 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
2541 AGACCGGTCA
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
25 4 0.06
27 47 0.71
29 15 0.23
ACGTcount: A:0.10, C:0.23, G:0.49, T:0.18
Consensus pattern (27 bp):
GGTCAACGGTCGGGTCGGGTCGGGTCG
Found at i:2509 original size:32 final size:32
Alignment explanation
Indices: 2473--2540 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
2463 TCGGGTCAAC
2473 GGTCGGGTCGGGTCGGGTCAACGGTCGGGTCG
1 GGTCGGGTCGGGTCGGGTCAACGGTCGGGTCG
2505 GGTCGGGTCGGGTCGGGTCAACGGTCGGGTCG
1 GGTCGGGTCGGGTCGGGTCAACGGTCGGGTCG
2537 GGTC
1 GGTC
2541 AGACCGGTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.06, C:0.22, G:0.53, T:0.19
Consensus pattern (32 bp):
GGTCGGGTCGGGTCGGGTCAACGGTCGGGTCG
Found at i:2555 original size:9 final size:9
Alignment explanation
Indices: 2537--2606 Score: 68
Period size: 9 Copynumber: 7.3 Consensus size: 9
2527 GGTCGGGTCG
*
2537 GGTCAGACC
1 GGTCAAACC
2546 GGTCAAACC
1 GGTCAAACC
*
2555 GGTTGAAACC
1 GG-TCAAACC
2565 GGTCAAACC
1 GGTCAAACC
2574 GGTCAGAACC
1 GGTCA-AACC
*
2584 GGTTGAAAACC
1 GG-T-CAAACC
*
2595 GGTTAAACC
1 GGTCAAACC
2604 GGT
1 GGT
2607 TTCCAGCAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
9 29 0.56
10 15 0.29
11 7 0.13
12 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.29, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:2565 original size:19 final size:18
Alignment explanation
Indices: 2543--2606 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 18
2533 GTCGGGTCAG
2543 ACCGGTCAAACCGGTTGAA
1 ACCGGTCAAACCGGTT-AA
*
2562 ACCGGTCAAACCGGTCAGA
1 ACCGGTCAAACCGGTTA-A
*
2581 ACCGGTTGAAAACCGGTTAA
1 ACCGG-T-CAAACCGGTTAA
2601 ACCGGT
1 ACCGGT
2607 TTCCAGCAGC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
18 1 0.03
19 22 0.56
20 7 0.18
21 9 0.23
ACGTcount: A:0.31, C:0.27, G:0.27, T:0.16
Consensus pattern (18 bp):
ACCGGTCAAACCGGTTAA
Found at i:3461 original size:81 final size:81
Alignment explanation
Indices: 3326--3524 Score: 265
Period size: 81 Copynumber: 2.4 Consensus size: 81
3316 GGTTGTTACA
* * * * * *
3326 GCCTTTGAGTAAAAGATTAATTTCCTAGCTGTGCATTTGGCAGAAATGTTCCAATATTG-CAAGT
1 GCCTTTGAGTAAAAGATTAATTGCCTAACTGTGCATTTAGAAGAAAGGTTCCAATAATGTC-AGT
*
3390 TAGATGAATGGCTAAAT
65 TAGATGAAAGGCTAAAT
*
3407 GCCTTTGAGTAAAAGATTAAATGCCTAACTGTGCATTTAGAAGAAAGGTTCCAATAATGTCAGTT
1 GCCTTTGAGTAAAAGATTAATTGCCTAACTGTGCATTTAGAAGAAAGGTTCCAATAATGTCAGTT
*
3472 AGATGAAAGGTTAAAT
66 AGATGAAAGGCTAAAT
* * *
3488 GCCTTTGAGATAAAAGACTAATTGTCTATCTGTGCAT
1 GCCTTTGAG-TAAAAGATTAATTGCCTAACTGTGCAT
3525 AGCTGGCATG
Statistics
Matches: 103, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
81 79 0.77
82 24 0.23
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (81 bp):
GCCTTTGAGTAAAAGATTAATTGCCTAACTGTGCATTTAGAAGAAAGGTTCCAATAATGTCAGTT
AGATGAAAGGCTAAAT
Found at i:13233 original size:24 final size:24
Alignment explanation
Indices: 13206--13254 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
13196 AACGTCAGAG
13206 AGCCTAGACTACAACCCCAATCCT
1 AGCCTAGACTACAACCCCAATCCT
13230 AGCCTAGACTACAACCCCAATCCT
1 AGCCTAGACTACAACCCCAATCCT
13254 A
1 A
13255 AAGACAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.41, G:0.08, T:0.16
Consensus pattern (24 bp):
AGCCTAGACTACAACCCCAATCCT
Found at i:24318 original size:2 final size:2
Alignment explanation
Indices: 24311--24337 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24301 CTATACCATC
24311 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24338 CATACATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27500 original size:19 final size:18
Alignment explanation
Indices: 27478--27516 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
27468 CACTACTATA
*
27478 TTACTTGCATCGATTGTGT
1 TTACTTGCATAGATT-TGT
*
27497 TTACTTGTATAGATTTGT
1 TTACTTGCATAGATTTGT
27515 TT
1 TT
27517 GCTTTAGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.18, C:0.10, G:0.18, T:0.54
Consensus pattern (18 bp):
TTACTTGCATAGATTTGT
Found at i:30809 original size:102 final size:102
Alignment explanation
Indices: 30633--30837 Score: 349
Period size: 102 Copynumber: 2.0 Consensus size: 102
30623 TCACGGGATG
30633 ACTCTACCTGACTAGCTCGAGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGGATGGTAGT
1 ACTCTACCTGACTAGCTCGAGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGGATGGTAGT
*
30698 GTGATGAGATGACTCCCCTTAAAGT-CTTCTTAAAAAA
66 GTGATGAGATGACTCCCCTTAAAGTAC-GCTTAAAAAA
* * * *
30735 ACTCTACTTGACTAGCTCGGGGGTGGAAGGTGTTCTCCCTTTCACTTAGAGTGTGGGATGGTAGT
1 ACTCTACCTGACTAGCTCGAGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGGATGGTAGT
30800 GTGATGAGATGACTCCCCTTAAAGTACGCTTAAAAAA
66 GTGATGAGATGACTCCCCTTAAAGTACGCTTAAAAAA
30837 A
1 A
30838 GATATTTGAA
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
102 96 0.99
103 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (102 bp):
ACTCTACCTGACTAGCTCGAGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGGATGGTAGT
GTGATGAGATGACTCCCCTTAAAGTACGCTTAAAAAA
Found at i:33549 original size:59 final size:59
Alignment explanation
Indices: 33468--33587 Score: 195
Period size: 59 Copynumber: 2.0 Consensus size: 59
33458 AAGCCTTGGA
* * *
33468 AACTGGGAGGGTAACCAAAAAAACCAAAACTGAATTTTCCAATCAAGTCGTCATTTCCG
1 AACTGGAAGGGTAACAAAAAAAACCAAAACTGAATTTTCCAATCAAGTCATCATTTCCG
* *
33527 AACTGGAAGGGTAACAAAAAAAACCAAAACTGAATTTTCTAATCAAGTCATCATTTTCG
1 AACTGGAAGGGTAACAAAAAAAACCAAAACTGAATTTTCCAATCAAGTCATCATTTCCG
33586 AA
1 AA
33588 GTAACCTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.23
Consensus pattern (59 bp):
AACTGGAAGGGTAACAAAAAAAACCAAAACTGAATTTTCCAATCAAGTCATCATTTCCG
Found at i:35220 original size:22 final size:23
Alignment explanation
Indices: 35180--35244 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
35170 CAGTTATTGA
*
35180 ATATAT-ATATATATATATATATG
1 ATATATGATAT-TATTTATATATG
* *
35203 ATA-ATGATATTATTTATATTTT
1 ATATATGATATTATTTATATATG
*
35225 ATATATGAGA-TATTTATATA
1 ATATATGATATTATTTATATA
35245 GTTTTTCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
22 23 0.66
23 12 0.34
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (23 bp):
ATATATGATATTATTTATATATG
Found at i:42775 original size:3 final size:3
Alignment explanation
Indices: 42767--42843 Score: 120
Period size: 3 Copynumber: 25.3 Consensus size: 3
42757 TATTTTTAAA
*
42767 ATT ATT ATT ATT ATT AAAT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
42813 ATT ATT A-T ATAT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A
42844 AATAAATAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
2 2 0.03
3 62 0.90
4 5 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:44113 original size:22 final size:21
Alignment explanation
Indices: 44088--44128 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
44078 TAGTTTGATA
*
44088 ATTTTTATTTAATATATTTTGC
1 ATTTTAATTTAATA-ATTTTGC
*
44110 ATTTTAATTTTATAATTTT
1 ATTTTAATTTAATAATTTT
44129 AATTTTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
ATTTTAATTTAATAATTTTGC
Found at i:44129 original size:14 final size:14
Alignment explanation
Indices: 44110--44147 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
44100 TATATTTTGC
44110 ATTTTAATTTTATA
1 ATTTTAATTTTATA
44124 ATTTTAATTTTATA
1 ATTTTAATTTTATA
44138 ATTTTAATTT
1 ATTTTAATTT
44148 CTTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTTAATTTTATA
Found at i:44229 original size:23 final size:23
Alignment explanation
Indices: 44171--44239 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
44161 TTATTTACAA
44171 TATTATTTTATTATTACTTT--T
1 TATTATTTTATTATTACTTTCAT
* *
44192 GATATATTTAAATTATTACTTTCAT
1 TAT-TATTT-TATTATTACTTTCAT
*
44217 TATTATTTTATTATTATTTTCAT
1 TATTATTTTATTATTACTTTCAT
44240 CTTAGTTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 2 0.05
22 5 0.13
23 24 0.62
24 5 0.13
25 3 0.08
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (23 bp):
TATTATTTTATTATTACTTTCAT
Found at i:44231 original size:11 final size:11
Alignment explanation
Indices: 44171--44236 Score: 64
Period size: 11 Copynumber: 5.8 Consensus size: 11
44161 TTATTTACAA
44171 TATTATTTTAT
1 TATTATTTTAT
44182 TATTACTTTTGA-
1 TATTA-TTTT-AT
*
44194 TA-TATTTAAAT
1 TATTATTT-TAT
*
44205 TATTACTTTCAT
1 TATTA-TTTTAT
44217 TATTATTTTAT
1 TATTATTTTAT
44228 TATTATTTT
1 TATTATTTT
44237 CATCTTAGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
10 4 0.09
11 23 0.50
12 15 0.33
13 4 0.09
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:44456 original size:148 final size:154
Alignment explanation
Indices: 44288--44684 Score: 417
Period size: 148 Copynumber: 2.6 Consensus size: 154
44278 TTTAAATAAT
* *
44288 AATATTTATTTATTTTTTAATATTAAGAAATGGCAGTCTTAATATAACTAGATGTCTTATTTTTG
1 AATATTTATTTATTTATTAATATTAAGAAATGGCAGTCTTAAAATAACTAGATGTCTTATTTTTG
*
44353 -TA-TTTTAAATAAATAAATATT-ATAAAAAT-TATATATATTTTATTTTA-TTTCAATTATTTT
66 ATATTTTTAAATAAATAAATATTCATAAAAATGTATATATA-TTTA-CTTAGTTTCAATTATTTT
44413 TTAGG-AAAAATGATCACA-T-TT-TC
129 TTAGGAAAAAAT-ATCACATTATTATC
* * * *
44436 AATATTTATTTATTTCTTAATATTAAGAAAGGGCGGTCTTAAAATAACTAGATGT-TCTA-TTCT
1 AATATTTATTTATTTATTAATATTAAGAAATGGCAGTCTTAAAATAACTAGATGTCT-TATTTTT
* * **
44499 GATATTTTTAAAATATATATATATATATATTGCTTATAAATGTATATATATTTACTTAGTTTTTA
65 GATATTTTT--AA-ATA-A-ATA-A-ATATT-CATAAAAATGTATATATATTTACTTAGTTTCAA
* * *
44564 TTATTTTTTAGGAAAAAATATTATATTATTATT
122 TTATTTTTTAGGAAAAAATATCACATTATTATC
* * *
44597 AATATTTATTTATTTATTAATATTAAAAAAAT-ACAGTCTTAAAACAACTAGATGTC--ATTTTC
1 AATATTTATTTATTTATTAATATT-AAGAAATGGCAGTCTTAAAATAACTAGATGTCTTATTTT-
44659 TGATATTTTTAAATAAATAAATATTC
64 TGATATTTTTAAATAAATAAATATTC
44685 TATTTACAAA
Statistics
Matches: 207, Mismatches: 20, Indels: 39
0.78 0.08 0.15
Matches are distributed among these distances:
147 5 0.02
148 55 0.27
149 4 0.02
151 2 0.01
152 3 0.01
153 2 0.01
154 8 0.04
155 2 0.01
156 8 0.04
157 4 0.02
158 33 0.16
159 18 0.09
160 4 0.02
161 54 0.26
162 5 0.02
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (154 bp):
AATATTTATTTATTTATTAATATTAAGAAATGGCAGTCTTAAAATAACTAGATGTCTTATTTTTG
ATATTTTTAAATAAATAAATATTCATAAAAATGTATATATATTTACTTAGTTTCAATTATTTTTT
AGGAAAAAATATCACATTATTATC
Found at i:44613 original size:18 final size:18
Alignment explanation
Indices: 44580--44620 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
44570 TTTAGGAAAA
44580 AATA-TTATATTATTATT
1 AATATTTATATTATTATT
44597 AATATTTAT-TTATTTATT
1 AATATTTATATTA-TTATT
44615 AATATT
1 AATATT
44621 AAAAAAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
AATATTTATATTATTATT
Found at i:44709 original size:2 final size:2
Alignment explanation
Indices: 44702--44738 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
44692 AAAACCCTAA
44702 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44739 TTTGAAAGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45969 original size:18 final size:18
Alignment explanation
Indices: 45918--45971 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
45908 AGTTATTCAT
*
45918 CATTAAAATATTAATAGA
1 CATTAAAATATTAATTGA
45936 CATTAAAATATTAATTGA
1 CATTAAAATATTAATTGA
45954 CATTAAAATATTAATTGA
1 CATTAAAATATTAATTGA
45972 ATTGTAAGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.37
Consensus pattern (18 bp):
CATTAAAATATTAATTGA
Found at i:47219 original size:20 final size:21
Alignment explanation
Indices: 47194--47245 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
47184 TTTTCCCAAT
*
47194 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
47214 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
47235 TCGCAATGCGA
1 TCGCAATGCGA
47246 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:47259 original size:20 final size:20
Alignment explanation
Indices: 47234--47347 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
47224 AATTGGGAAA
*
47234 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
47254 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
47274 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
47295 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
47315 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
47335 TTCGCAACGCGAT
1 ATCGCAACGCGAT
47348 TTACATAGCA
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:47278 original size:61 final size:61
Alignment explanation
Indices: 47231--47347 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
47221 GCGAATTGGG
* * * * *
47231 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
47292 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
47348 TTACATAGCA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:47952 original size:19 final size:19
Alignment explanation
Indices: 47905--47946 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
47895 ACGAGATAAT
*
47905 CGCAACGCGAAATAAAAAA
1 CGCAACGCGAAACAAAAAA
*
47924 CGCAACGCGAAACAAAAAT
1 CGCAACGCGAAACAAAAAA
47943 CGCA
1 CGCA
47947 TTGCGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.52, C:0.26, G:0.17, T:0.05
Consensus pattern (19 bp):
CGCAACGCGAAACAAAAAA
Found at i:47964 original size:19 final size:19
Alignment explanation
Indices: 47942--48125 Score: 156
Period size: 19 Copynumber: 10.1 Consensus size: 19
47932 GAAACAAAAA
* *
47942 TCGCATTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
47961 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
47980 TCGCGTTGCGATTTT-ATT
1 TCGCGTTGCGATTTTCATT
47998 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
48018 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
48034 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
48051 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * **
48065 TCTCGTTGCAATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
48084 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
48104 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
48124 TC
1 TC
48126 AACAAAAAGA
Statistics
Matches: 135, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
14 19 0.14
15 1 0.01
16 3 0.02
17 3 0.02
18 8 0.06
19 63 0.47
20 37 0.27
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:48095 original size:34 final size:33
Alignment explanation
Indices: 48013--48100 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
48003 GTTGCGATTT
* * *
48013 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCAATAG
*
48046 TCATTTCGCGTTGCGATTCTCTCGTTGCAATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCAATAG
48079 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
48101 ATTATCTCGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 35 0.70
34 15 0.30
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCAATAG
Found at i:48102 original size:20 final size:20
Alignment explanation
Indices: 48079--48125 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
48069 GTTGCAATAG
48079 TCATTTCCGCGTTGCGATTC
1 TCATTTCCGCGTTGCGATTC
* *
48099 TCATTAT-CTCGTTGCGATTT
1 TCATT-TCCGCGTTGCGATTC
48119 TCATTTC
1 TCATTTC
48126 AACAAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.04
20 21 0.91
21 1 0.04
ACGTcount: A:0.13, C:0.26, G:0.15, T:0.47
Consensus pattern (20 bp):
TCATTTCCGCGTTGCGATTC
Found at i:49422 original size:21 final size:21
Alignment explanation
Indices: 49398--49465 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
49388 CGAGAGCCAT
49398 CACCTGATCGACCCGACTATA
1 CACCTGATCGACCCGACTATA
* * ** *
49419 CACCT-CTACAACGAGAGCCAT-
1 CACCTGAT-CGACCCGA-CTATA
49440 CACCTGATCGACCCGACTATA
1 CACCTGATCGACCCGACTATA
49461 CACCT
1 CACCT
49466 CTACAACGAG
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
20 4 0.12
21 25 0.76
22 4 0.12
ACGTcount: A:0.29, C:0.40, G:0.13, T:0.18
Consensus pattern (21 bp):
CACCTGATCGACCCGACTATA
Found at i:49447 original size:42 final size:42
Alignment explanation
Indices: 49388--49486 Score: 198
Period size: 42 Copynumber: 2.4 Consensus size: 42
49378 TCCTCCACTT
49388 CGAGAGCCATCACCTGATCGACCCGACTATACACCTCTACAA
1 CGAGAGCCATCACCTGATCGACCCGACTATACACCTCTACAA
49430 CGAGAGCCATCACCTGATCGACCCGACTATACACCTCTACAA
1 CGAGAGCCATCACCTGATCGACCCGACTATACACCTCTACAA
49472 CGAGAGCCATCACCT
1 CGAGAGCCATCACCT
49487 ATCCCGTCAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.30, C:0.38, G:0.15, T:0.16
Consensus pattern (42 bp):
CGAGAGCCATCACCTGATCGACCCGACTATACACCTCTACAA
Found at i:49485 original size:21 final size:21
Alignment explanation
Indices: 49419--49486 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
49409 CCCGACTATA
49419 CACCTCTACAACGAGAGCCAT
1 CACCTCTACAACGAGAGCCAT
* * ** *
49440 CACCT-GATCGACCCGA-CTAT
1 CACCTCTA-CAACGAGAGCCAT
49460 ACACCTCTACAACGAGAGCCAT
1 -CACCTCTACAACGAGAGCCAT
49482 CACCT
1 CACCT
49487 ATCCCGTCAC
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
20 4 0.12
21 25 0.76
22 4 0.12
ACGTcount: A:0.31, C:0.40, G:0.13, T:0.16
Consensus pattern (21 bp):
CACCTCTACAACGAGAGCCAT
Found at i:50211 original size:42 final size:42
Alignment explanation
Indices: 50151--50243 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
50141 GCCCGACTCG
* * *
50151 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
50193 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* *
50235 ACTGTCATC
1 CCTATCATC
50244 GTTGAAGAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.22, C:0.39, G:0.16, T:0.24
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:51649 original size:14 final size:14
Alignment explanation
Indices: 51630--51665 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
51620 ATTGTTTAAT
51630 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
51644 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
51658 TGATTTGT
1 TGATTTGT
51666 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:51889 original size:33 final size:31
Alignment explanation
Indices: 51846--52006 Score: 196
Period size: 33 Copynumber: 4.9 Consensus size: 31
51836 AATTAAATTC
* *
51846 GCGTTGCGATTTTCATTTCGTATTGCGATTCCC
1 GCGTTGCGATTTTCATTTCGCATTGCGATT--A
* *
51879 TCGTTGCGATTTTCATTTCGCATTACGAAATTA
1 GCGTTGCGATTTTCATTTCGCATTGCG--ATTA
51912 GCGTTGCGATTTTCATTTCGCATTGCGAAATTA
1 GCGTTGCGATTTTCATTTCGCATTGCG--ATTA
*
51945 GCGTTGCGATTTTCATTTCGCATTGCGATTCTC
1 GCGTTGCGATTTTCATTTCGCATTGCGA-T-TA
*
51978 TCGTTGCGATTTTCATTTCGCATTGCGAT
1 GCGTTGCGATTTTCATTTCGCATTGCGAT
52007 AGTAATTTCC
Statistics
Matches: 116, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
31 1 0.01
32 2 0.02
33 110 0.95
35 3 0.03
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.42
Consensus pattern (31 bp):
GCGTTGCGATTTTCATTTCGCATTGCGATTA
Found at i:51937 original size:66 final size:64
Alignment explanation
Indices: 51840--52006 Score: 219
Period size: 66 Copynumber: 2.5 Consensus size: 64
51830 ACGCGAAATT
* **
51840 AAATTCGCGTTGCGATTTTCATTTCGTATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTAC
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATT--AGCGTTGCGATTTTCATTTCGCATTAC
51905 G
64 G
* *
51906 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGAAATTAGCGTTGCGATTTTCATTTCGCATTGC
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG--ATTAGCGTTGCGATTTTCATTTCGCATTAC
51971 G
64 G
* *
51972 -ATTCTCTCGTTGCGATTTTCATTTCGCATTGCGAT
1 AAAT-TCGCGTTGCGATTTTCATTTCGCATTGCGAT
52007 AGTAATTTCC
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
64 2 0.02
65 2 0.02
66 83 0.92
68 3 0.03
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (64 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTAGCGTTGCGATTTTCATTTCGCATTACG
Found at i:54308 original size:12 final size:12
Alignment explanation
Indices: 54291--54315 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
54281 TCTTCAGGGA
54291 CTTTTTCTTCTT
1 CTTTTTCTTCTT
54303 CTTTTTCTTCTT
1 CTTTTTCTTCTT
54315 C
1 C
54316 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:54524 original size:24 final size:24
Alignment explanation
Indices: 54490--54543 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
54480 CTGAAACATC
* *
54490 ATCAAAATCCGTGTATTAACCAAT
1 ATCAAAATCCGGGTATTAACCAAG
* *
54514 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTAACCAAG
54538 ATCAAA
1 ATCAAA
54544 TTTCGAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTAACCAAG
Found at i:55626 original size:20 final size:20
Alignment explanation
Indices: 55601--55651 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
55591 ATTCATTTGA
55601 CTATCGCAACGCAAAAATGG
1 CTATCGCAACGCAAAAATGG
*
55621 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCAAAAATGG
55641 CTATCGCAACG
1 CTATCGCAACG
55652 AGAAAATCGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCAAAAATGG
Found at i:55656 original size:20 final size:20
Alignment explanation
Indices: 55601--55658 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
55591 ATTCATTTGA
55601 CTATCGCAACGCA-AAAATGG
1 CTATCGCAACG-AGAAAATGG
*
55621 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
55641 CTATCGCAACGAGAAAAT
1 CTATCGCAACGAGAAAAT
55659 CGCAATGCGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:55720 original size:19 final size:19
Alignment explanation
Indices: 55677--55763 Score: 130
Period size: 19 Copynumber: 4.8 Consensus size: 19
55667 GAAATGAAAA
55677 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
55693 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
55710 TTGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
55729 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
55748 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
55764 TCGTTGCGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
14 11 0.17
16 3 0.05
17 2 0.03
19 48 0.75
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.48
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:55899 original size:14 final size:14
Alignment explanation
Indices: 55880--55916 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
55870 CATCAATTAA
55880 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
55894 ACAAATCATCTTTT
1 ACAAATCAACATTT
55908 ACAAATCAA
1 ACAAATCAA
55917 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:57820 original size:20 final size:19
Alignment explanation
Indices: 57788--57851 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
57778 ACTTAAAATT
57788 GCAACGCGAAATGACTATC
1 GCAACGCGAAATGACTATC
*
57807 GCAACGCGGAAATGGCTATC
1 GCAACGC-GAAATGACTATC
* * **
57827 GCAATGTGAAATGAAAATC
1 GCAACGCGAAATGACTATC
57846 GCAACG
1 GCAACG
57852 ACAAAATCGC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
19 21 0.57
20 16 0.43
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.16
Consensus pattern (19 bp):
GCAACGCGAAATGACTATC
Found at i:57859 original size:14 final size:14
Alignment explanation
Indices: 57840--57897 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
57830 ATGTGAAATG
57840 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
57854 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
57870 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
57886 AAAATCGCAACG
1 AAAATCGCAACG
57898 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:57882 original size:32 final size:33
Alignment explanation
Indices: 57824--57902 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
57814 GGAAATGGCT
* *
57824 ATCGCAATGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
57857 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
57889 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
57903 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 30 0.68
33 14 0.32
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:57950 original size:14 final size:14
Alignment explanation
Indices: 57931--57988 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
57921 TTTCATTTCG
57931 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
57945 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
57961 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
57977 CGTTGCGATTTT
1 CGTTGCGATTTT
57989 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:57995 original size:33 final size:33
Alignment explanation
Indices: 57914--58004 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
57904 ACAAATCGCA
*
57914 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
57947 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
57979 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
58005 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:58023 original size:20 final size:19
Alignment explanation
Indices: 57989--58043 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
57979 TTGCGATTTT
*
57989 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
58008 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
58028 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
58044 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:58551 original size:18 final size:18
Alignment explanation
Indices: 58525--58569 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
58515 GTCGATCAGA
*
58525 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
58543 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
58561 TGATGGCTC
1 TGATGGCTC
58570 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:59905 original size:20 final size:20
Alignment explanation
Indices: 59880--59922 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
59870 AATAGTTTCT
59880 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
*
59900 GAAAATGAAAATCGCAACGC
1 GAAAATGAAAATCGCAACAC
59920 GAA
1 GAA
59923 TTCGACTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:60488 original size:40 final size:40
Alignment explanation
Indices: 60410--60489 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
60400 TGGCGCTTTG
* * *
60410 AAAATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTC
1 AAAATCGCATTGCGA-TAAGTAGTATCGCATTGCGAAAGTC
60451 AAAATCGCATTGCGA-AAGTCAGTATCGCATTGCGAAAGT
1 AAAATCGCATTGCGATAAGT-AGTATCGCATTGCGAAAGT
60490 AAGTATCTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 3 0.09
40 17 0.49
41 15 0.43
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (40 bp):
AAAATCGCATTGCGATAAGTAGTATCGCATTGCGAAAGTC
Found at i:60505 original size:20 final size:20
Alignment explanation
Indices: 60433--60496 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
60423 GATTATGTAT
*
60433 TATCGCGTTGCGAAAGTCAA-
1 TATCGCATTGCGAAAGT-AAG
* *
60453 AATCGCATTGCGAAAGTCAG
1 TATCGCATTGCGAAAGTAAG
60473 TATCGCATTGCGAAAGTAAG
1 TATCGCATTGCGAAAGTAAG
60493 TATC
1 TATC
60497 TCGTTGCGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 1 0.03
20 37 0.97
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (20 bp):
TATCGCATTGCGAAAGTAAG
Found at i:60570 original size:21 final size:21
Alignment explanation
Indices: 60537--60612 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
60527 ATAGTCAGTA
*
60537 TCGCATTGTGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
60558 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
60578 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
*
60599 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
60613 ACTTATTCGC
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 28 0.64
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:60581 original size:20 final size:20
Alignment explanation
Indices: 60556--60622 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
60546 GATTTTCCCA
60556 ATTCGCGTTGCGATTTACTT
1 ATTCGCGTTGCGATTTACTT
* * **
60576 ATTCGCATTGCGATTTTCCCA
1 ATTCGCGTTGCGA-TTTACTT
60597 ATTCGCGTTGCGATTTACTT
1 ATTCGCGTTGCGATTTACTT
60617 ATTCGC
1 ATTCGC
60623 ATTGTGAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (20 bp):
ATTCGCGTTGCGATTTACTT
Found at i:60582 original size:41 final size:41
Alignment explanation
Indices: 60537--60629 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
60527 ATAGTCAGTA
60537 TCGCATTGTGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGTGATTTTCCCAATTCGCGTTGCGATTTACTTAT
*
60578 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGTGATTTTCCCAATTCGCGTTGCGATTTACTTAT
60619 TCGCATTGTGA
1 TCGCATTGTGA
60630 ATTGGGAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (41 bp):
TCGCATTGTGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:63850 original size:23 final size:23
Alignment explanation
Indices: 63820--63870 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
63810 TTTGCATTAC
63820 CATATTAAGTACAGCAAATCAAG
1 CATATTAAGTACAGCAAATCAAG
* *
63843 CATATTAAGTGCAGCAAGTCAAG
1 CATATTAAGTACAGCAAATCAAG
63866 CATAT
1 CATAT
63871 GATCTTTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.24
Consensus pattern (23 bp):
CATATTAAGTACAGCAAATCAAG
Found at i:64823 original size:28 final size:27
Alignment explanation
Indices: 64783--64847 Score: 112
Period size: 28 Copynumber: 2.4 Consensus size: 27
64773 TTTACGGTCT
*
64783 GAAACAAAAGCAACAGTATCAGTACCAA
1 GAAACAAAAGCAACAGCATCAGTACC-A
64811 GAAACAAAAGCAACAGCATCAGTACCA
1 GAAACAAAAGCAACAGCATCAGTACCA
64838 GAAACAAAAG
1 GAAACAAAAG
64848 TCTAGGAACT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 25 0.69
ACGTcount: A:0.55, C:0.22, G:0.15, T:0.08
Consensus pattern (27 bp):
GAAACAAAAGCAACAGCATCAGTACCA
Found at i:65256 original size:38 final size:38
Alignment explanation
Indices: 65214--65290 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
65204 TAATCCATTG
65214 CAAATAGCAATTAGAATATTTAGATTGAAATATTAATC
1 CAAATAGCAATTAGAATATTTAGATTGAAATATTAATC
65252 CAAATAGCAATTAGAATATTTAGATTGAAATATTAATC
1 CAAATAGCAATTAGAATATTTAGATTGAAATATTAATC
65290 C
1 C
65291 GAATCCTAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.47, C:0.09, G:0.10, T:0.34
Consensus pattern (38 bp):
CAAATAGCAATTAGAATATTTAGATTGAAATATTAATC
Found at i:66021 original size:3 final size:3
Alignment explanation
Indices: 66013--66044 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
66003 GTTCGAGTTC
66013 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
66045 GTAGACACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:66081 original size:2 final size:2
Alignment explanation
Indices: 66074--66102 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
66064 CGAATTTATT
66074 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
66103 GTTTTGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:66141 original size:38 final size:35
Alignment explanation
Indices: 66090--66371 Score: 282
Period size: 36 Copynumber: 7.8 Consensus size: 35
66080 TATATATATA
* * *
66090 TATATATTATATAGTTTTGAAAACGATTTTTTAAAAT
1 TATATAATATATAGTTTTAAAAAC-A-TTTTGAAAAT
* * *
66127 GTATATATTATATAG-TTTGAAATCATTTTGAAAATT
1 -TATATAATATATAGTTTTAAAAACATTTTGAAAA-T
*
66163 TATATAATATATGGTTTTTAAAAACATTTTGAAAACT
1 TATATAATATATAG-TTTTAAAAACATTTTGAAAA-T
* *
66200 TATATAATATATGATTTTTAAAAAAACATTTTAAAAAT
1 TATATAATATAT-AGTTTT--AAAAACATTTTGAAAAT
*
66238 TATATAATATATATTTTTTAAAAACATTTTGAAAA-
1 TATATAATATATA-GTTTTAAAAACATTTTGAAAAT
*
66273 TATATAATATATGGTTTCT-AAAACATTTTGAAAAT
1 TATATAATATATAGTTT-TAAAAACATTTTGAAAAT
* * *
66308 ATATATATTATATAGTTTTTAAAACATTTTGAAAACA
1 -TATATAATATATAGTTTTAAAAACATTTTGAAAA-T
* *
66345 TATATAATATATAGTTTTTAAACCATT
1 TATATAATATATAGTTTTAAAAACATT
66372 GAAAGCATAT
Statistics
Matches: 214, Mismatches: 18, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
34 18 0.08
35 34 0.16
36 72 0.34
37 43 0.20
38 32 0.15
39 15 0.07
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.45
Consensus pattern (35 bp):
TATATAATATATAGTTTTAAAAACATTTTGAAAAT
Found at i:66385 original size:2 final size:2
Alignment explanation
Indices: 66378--66445 Score: 129
Period size: 2 Copynumber: 34.5 Consensus size: 2
66368 CATTGAAAGC
66378 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66420 AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
66446 GTTTTTAAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 64 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66472 original size:38 final size:36
Alignment explanation
Indices: 66430--66639 Score: 212
Period size: 38 Copynumber: 5.7 Consensus size: 36
66420 ATATATATAT
66430 ATATATATATTATATAGTTTTTAAAATATTTTGAAAA
1 ATATATATATTATATAGTTTTTAAAATATTTTG-AAA
*
66467 CATATATATATTATATAGTTTTGAAAATATTTTGAAA
1 -ATATATATATTATATAGTTTTTAAAATATTTTGAAA
* *
66504 ATATATATATTATATAGGTTTTGAAAACATTTTGAAA
1 ATATATATATTATATA-GTTTTTAAAATATTTTGAAA
** * * **
66541 AT-TATATAATATATGATTTTTTTTGAAATTGTTTTTTAA
1 ATATATAT-AT-TAT-ATAGTTTTT-AAAATATTTTGAAA
*
66580 ATATATA-A-TATATAG-TTTCAAAATATTTTTGAAA
1 ATATATATATTATATAGTTTTTAAAATA-TTTTGAAA
* *
66614 TTATATATATTATGTAGTTTTTAAAA
1 ATATATATATTATATAGTTTTTAAAA
66640 AAATTTATAT
Statistics
Matches: 142, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
33 4 0.03
34 15 0.11
35 3 0.02
36 30 0.21
37 33 0.23
38 40 0.28
39 13 0.09
40 4 0.03
ACGTcount: A:0.42, C:0.01, G:0.08, T:0.49
Consensus pattern (36 bp):
ATATATATATTATATAGTTTTTAAAATATTTTGAAA
Found at i:66679 original size:10 final size:9
Alignment explanation
Indices: 66662--66722 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 9
66652 ATATATATAA
66662 TATTATTTT
1 TATTATTTT
66671 TATTCA-TTT
1 TATT-ATTTT
*
66680 TATT-TATT
1 TATTATTTT
66688 T-TTATTTT
1 TATTATTTT
*
66696 TAATATTTT
1 TATTATTTT
66705 T-TTA-TTT
1 TATTATTTT
*
66712 TATTTTTTT
1 TATTATTTT
66721 TA
1 TA
66723 ATTCCTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
7 6 0.15
8 11 0.27
9 23 0.56
10 1 0.02
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (9 bp):
TATTATTTT
Found at i:66694 original size:15 final size:14
Alignment explanation
Indices: 66664--66722 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 14
66654 ATATATAATA
*
66664 TTATTTTTATTCATT
1 TTATTTTT-TTTATT
66679 TTATTTATTTTTATTT
1 TTATTT-TTTTTA-TT
66695 TTAATATTTTTTTATT
1 TT-AT-TTTTTTTATT
66711 TTATTTTTTTTA
1 TTATTTTTTTTA
66723 ATTCCTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
14 8 0.21
15 11 0.28
16 10 0.26
17 8 0.21
18 2 0.05
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (14 bp):
TTATTTTTTTTATT
Found at i:66702 original size:19 final size:18
Alignment explanation
Indices: 66659--66712 Score: 67
Period size: 17 Copynumber: 3.0 Consensus size: 18
66649 TATATATATA
66659 TAATATTATTTTTATTCATT
1 TAATATTATTTTTATT--TT
*
66679 TTAT-TTATTTTTATTTT
1 TAATATTATTTTTATTTT
66696 TAATATT-TTTTTATTTT
1 TAATATTATTTTTATTTT
66713 ATTTTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 15 0.48
18 2 0.06
19 11 0.35
20 3 0.10
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (18 bp):
TAATATTATTTTTATTTT
Found at i:67969 original size:9 final size:9
Alignment explanation
Indices: 67955--68077 Score: 75
Period size: 9 Copynumber: 14.2 Consensus size: 9
67945 TTAACCCTAT
67955 TTTTTATTA
1 TTTTTATTA
67964 TTTTTATT-
1 TTTTTATTA
*
67972 TTATTTCATTG
1 TT-TTT-ATTA
67983 TTTTT-TTA
1 TTTTTATTA
67991 -TTTT-TTA
1 TTTTTATTA
*
67998 TTTACT-TTA
1 TTT-TTATTA
*
68007 TTTTTACTCA
1 TTTTTA-TTA
* *
68017 ATTTTATTT
1 TTTTTATTA
68026 TTTTTATT-
1 TTTTTATTA
68034 TTTTTA-T-
1 TTTTTATTA
68041 TTTTTATTA
1 TTTTTATTA
* *
68050 CTATTATTA
1 TTTTTATTA
*
68059 TTTTAATT-
1 TTTTTATTA
68067 TTTTTATTA
1 TTTTTATTA
68076 TT
1 TT
68078 CTTTTTTTCA
Statistics
Matches: 90, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
7 14 0.16
8 21 0.23
9 40 0.44
10 13 0.14
11 2 0.02
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.76
Consensus pattern (9 bp):
TTTTTATTA
Found at i:68045 original size:34 final size:33
Alignment explanation
Indices: 67991--68074 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
67981 TGTTTTTTTA
* *
67991 TTTTTTATTTACTTTA-TTTTTACTCAATTTTATT
1 TTTTTTATTT-TTTTATTTTTTA-TCAATATTATT
* *
68025 TTTTTTATTTTTTTATTTTTTATTACTATTATT
1 TTTTTTATTTTTTTATTTTTTATCAATATTATT
* *
68058 ATTTTAATTTTTTTATT
1 TTTTTTATTTTTTTATT
68075 ATTCTTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
33 27 0.63
34 16 0.37
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (33 bp):
TTTTTTATTTTTTTATTTTTTATCAATATTATT
Found at i:68085 original size:23 final size:24
Alignment explanation
Indices: 67958--68095 Score: 81
Period size: 24 Copynumber: 5.8 Consensus size: 24
67948 ACCCTATTTT
*
67958 TTATTATTTTT-A-TTTTATTTC-A
1 TTATT-TTTTTAATTTTTATTACTA
* *
67980 TTGTTTTTTTATTTTTTATTTACT-
1 TTATTTTTTTAATTTTTA-TTACTA
* ** *
68004 TTATTTTTACTCAA-TTTTATTTTTT
1 TTATTTTT--TTAATTTTTATTACTA
*
68029 TTATTTTTTTATTTTTTATTACTA
1 TTATTTTTTTAATTTTTATTACTA
* *
68053 TTATTATTTTAATTTTT-TTATTA
1 TTATTTTTTTAATTTTTATTACTA
* * *
68076 TTCTTTTTTTCATGTTTATT
1 TTATTTTTTTAATTTTTATT
68096 TTCATTTTTA
Statistics
Matches: 87, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 4 0.05
23 25 0.29
24 38 0.44
25 13 0.15
26 2 0.02
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.75
Consensus pattern (24 bp):
TTATTTTTTTAATTTTTATTACTA
Found at i:73831 original size:84 final size:84
Alignment explanation
Indices: 73690--73843 Score: 263
Period size: 84 Copynumber: 1.8 Consensus size: 84
73680 GCCTATTTGC
* *
73690 AGCATAGCTCAAGGCGAGAAGGGATATTTGTCAATAAAGACCTTCGAGTTCGATTACATTCAGCT
1 AGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
73755 CAAAGGCATTCAAATTTAT
66 CAAAGGCATTCAAATTTAT
* * *
73774 AGCATAGCTCAAGGCGAGGAGGGCTATCTGTCAGCAAAGACCTTCGAGTTCGATTACATTCAGCT
1 AGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
73839 CAAAG
66 CAAAG
73844 ACATAGCTCA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 65 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (84 bp):
AGCATAGCTCAAGGCGAGAAGGGATATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAGCT
CAAAGGCATTCAAATTTAT
Found at i:73890 original size:69 final size:69
Alignment explanation
Indices: 73776--73908 Score: 196
Period size: 69 Copynumber: 1.9 Consensus size: 69
73766 AAATTTATAG
* * * *
73776 CATAGCTCAAGGCGAGGAGGGCTATCTGTCAGCAAAGACCTTCGAGTTCGATTACATTCAGCTCA
1 CATAGCTCAAGGCGAGAAGGGCTATCTATCAACAAAGAACTTCGAGTTCGATTACATTCAGCTCA
73841 AAGA
66 AAGA
* *
73845 CATAGCTCAAGGCGAGAAGGGCTATCTATCAACAAA-AATTGTCGAGTTCGATTTCATTCAGCTC
1 CATAGCTCAAGGCGAGAAGGGCTATCTATCAACAAAGAACT-TCGAGTTCGATTACATTCAGCTC
73909 GATGACACAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
68 2 0.04
69 55 0.96
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (69 bp):
CATAGCTCAAGGCGAGAAGGGCTATCTATCAACAAAGAACTTCGAGTTCGATTACATTCAGCTCA
AAGA
Found at i:74640 original size:2 final size:2
Alignment explanation
Indices: 74633--74663 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
74623 CCGTCCGAAT
74633 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74664 GTTTTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:74718 original size:38 final size:38
Alignment explanation
Indices: 74649--74785 Score: 129
Period size: 36 Copynumber: 3.6 Consensus size: 38
74639 TATATATATA
* *
74649 TATATATATAATATAGTTTTTAAAACGATTTTTTTGAAAAT
1 TATATA-AT-ATATAGATTTTAAATC-ATTTTTTTGAAAAT
* *
74690 GTATATATTATATAG-TTTGAAATCA--TTTTTGAAAACT
1 -TATATAATATATAGATTTTAAATCATTTTTTTGAAAA-T
* **
74727 TATATAATATAT-GATTTTTAATTTTTTTTTTGAAAAT
1 TATATAATATATAGATTTTAAATCATTTTTTTGAAAAT
*
74764 TATATAATATATAGTTTTTAAA
1 TATATAATATATAGATTTTAAA
74786 AACATTTTGA
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
35 1 0.01
36 27 0.34
37 14 0.17
38 18 0.22
39 7 0.09
40 6 0.08
41 1 0.01
42 6 0.08
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (38 bp):
TATATAATATATAGATTTTAAATCATTTTTTTGAAAAT
Found at i:74731 original size:36 final size:34
Alignment explanation
Indices: 74651--74917 Score: 175
Period size: 37 Copynumber: 7.4 Consensus size: 34
74641 TATATATATA
*
74651 TATATATAATATAGTTTTTAAAACGATTTTTTTGAAAAT
1 TATATATTATATAG-TTTTAAAAC-A---TTTTGAAAAT
* *
74690 GTATATATTATATAGTTTGAAATCATTTTTGAAAACT
1 -TATATATTATATAGTTTTAAAACA-TTTTGAAAA-T
* * ****
74727 TATATAATATATGATTTTTAATTTTTTTTTTGAAAAT
1 TATATATTATAT-AGTTTTAA--AACATTTTGAAAAT
*
74764 TATATAATATATAGTTTTTAAAAACATTTTGAAAA-
1 TATATATTATATAG-TTTT-AAAACATTTTGAAAAT
*
74799 TATATAATAAATATATGTTTCTAAAACATTTTG-AAAT
1 TATAT-AT-TATATA-GTTT-TAAAACATTTTGAAAAT
*
74836 ATATATATTATAT-TTTTTAAAACATTTTGAAAA-
1 -TATATATTATATAGTTTTAAAACATTTTGAAAAT
* *
74869 CATATA-TATTATAGTTTTTAAAACATTTTGAAAAA
1 TATATATTA-TATAG-TTTTAAAACATTTTGAAAAT
*
74904 CATATATATATATA
1 TATATAT-TATATA
74918 TATATATATA
Statistics
Matches: 188, Mismatches: 20, Indels: 42
0.75 0.08 0.17
Matches are distributed among these distances:
31 2 0.01
32 8 0.04
33 12 0.06
34 25 0.13
35 11 0.06
36 43 0.23
37 47 0.25
38 19 0.10
39 8 0.04
40 13 0.07
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (34 bp):
TATATATTATATAGTTTTAAAACATTTTGAAAAT
Found at i:74848 original size:34 final size:34
Alignment explanation
Indices: 74648--74916 Score: 179
Period size: 34 Copynumber: 7.4 Consensus size: 34
74638 ATATATATAT
*
74648 ATATATATATAATATAGTTTTTAAAACGATTTTTTTGAAA
1 ATATATATATTATAT-GTTTTTAAAAC-A---TTTTG-AA
* * *
74688 ATGTATATATTATATAG-TTTGAAATCATTTTTGAA
1 ATATATATATTATAT-GTTTTTAAAACA-TTTTGAA
* ****
74723 A-ACTTATATAATATATGATTTTTAATTTTTTTTTTGAA
1 ATA--TATATATTATATG-TTTTTAA--AACATTTTGAA
*
74761 A-ATTATATAATATATAGTTTTTAAAAACATTTTGAAA
1 ATA-TATATATTATAT-GTTTTT-AAAACATTTTG-AA
* *
74798 ATATATAATAAATATATGTTTCTAAAACATTTTGAA
1 ATATAT-AT-ATTATATGTTTTTAAAACATTTTGAA
74834 ATATATATATTATAT-TTTTTAAAACATTTTGAAA
1 ATATATATATTATATGTTTTTAAAACATTTTG-AA
*
74868 ACATATATATTATA-GTTTTTAAAACATTTTGAA
1 ATATATATATTATATGTTTTTAAAACATTTTGAA
* *
74901 AAACATATATATATAT
1 ATATATATAT-TATAT
74917 ATATATATAT
Statistics
Matches: 193, Mismatches: 20, Indels: 37
0.77 0.08 0.15
Matches are distributed among these distances:
33 25 0.13
34 41 0.21
35 6 0.03
36 30 0.16
37 40 0.21
38 21 0.11
39 15 0.08
40 15 0.08
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (34 bp):
ATATATATATTATATGTTTTTAAAACATTTTGAA
Found at i:74912 original size:2 final size:2
Alignment explanation
Indices: 74905--74938 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74895 TTTGAAAAAC
74905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74939 TTTTTTGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75121 original size:36 final size:34
Alignment explanation
Indices: 75068--75134 Score: 82
Period size: 36 Copynumber: 1.9 Consensus size: 34
75058 ATATATAATA
*
75068 TTATTATTATTTCTTTTTTATTCATTTTATTTATTT
1 TTATTATTATGTCTTTTTTATTC-TTTT-TTTATTT
*
75104 TTATTATATATGT-TTTTTTTTTCTTTTTTTA
1 TTATTAT-TATGTCTTTTTTATTCTTTTTTTA
75135 ATTCCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 4 0.14
35 4 0.14
36 16 0.57
37 4 0.14
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (34 bp):
TTATTATTATGTCTTTTTTATTCTTTTTTTATTT
Found at i:76373 original size:26 final size:26
Alignment explanation
Indices: 76344--76423 Score: 60
Period size: 26 Copynumber: 3.1 Consensus size: 26
76334 ATTTTCAAAA
76344 TTTAACCATATTTTTTTATTTTTTAT
1 TTTAACCATATTTTTTTATTTTTTAT
** *
76370 TTTATTTCAT-TTTTTATT-TATTTTAT
1 TTTA-ACCATATTTTT-TTATTTTTTAT
*
76396 TTTTACTCA-ATTTTATTTA-TTTTTAT
1 TTTAAC-CATATTTT-TTTATTTTTTAT
76422 TT
1 TT
76424 ATTTTATTAC
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
26 35 0.85
27 6 0.15
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (26 bp):
TTTAACCATATTTTTTTATTTTTTAT
Found at i:76375 original size:20 final size:20
Alignment explanation
Indices: 76352--76486 Score: 71
Period size: 21 Copynumber: 6.3 Consensus size: 20
76342 AATTTAACCA
76352 TATTTTTTTATTTTTTATTT
1 TATTTTTTTATTTTTTATTT
*
76372 TATTTCATTTT-TTATTTATTT
1 TATTT--TTTTATTTTTTATTT
* *
76393 TATTTTTACTCA-ATTTTA-TT
1 TATTTTT--TTATTTTTTATTT
*
76413 TATTTTTATTTATTTTATTACTAT
1 TA-TTTT-TTTATTTT-TTA-TTT
*
76437 TATTATTTTAATATTTTTATTAT
1 TATT-TTTTTAT-TTTTTATT-T
* *
76460 TATTTTTTCA-TGTTTATTT
1 TATTTTTTTATTTTTTATTT
76479 TCATTTTT
1 T-ATTTTT
76487 ACAATCTAAC
Statistics
Matches: 89, Mismatches: 11, Indels: 30
0.68 0.08 0.23
Matches are distributed among these distances:
19 4 0.04
20 24 0.27
21 25 0.28
22 14 0.16
23 14 0.16
24 8 0.09
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.73
Consensus pattern (20 bp):
TATTTTTTTATTTTTTATTT
Found at i:76381 original size:25 final size:26
Alignment explanation
Indices: 76353--76427 Score: 70
Period size: 26 Copynumber: 2.9 Consensus size: 26
76343 ATTTAACCAT
76353 ATTTTTTTATTTTTTATTTTATTTC-
1 ATTTTTTTATTTTTTATTTTATTTCA
*
76378 A-TTTTTTATTTATTTTATTTT-TACTCA
1 ATTTTTTTA-TT-TTTTATTTTAT-TTCA
76405 ATTTTATTTA-TTTTTA-TTTATTT
1 ATTTT-TTTATTTTTTATTTTATTT
76428 TATTACTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 14
0.72 0.04 0.25
Matches are distributed among these distances:
24 7 0.17
25 8 0.20
26 17 0.41
27 2 0.05
28 3 0.07
29 4 0.10
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (26 bp):
ATTTTTTTATTTTTTATTTTATTTCA
Found at i:76383 original size:17 final size:16
Alignment explanation
Indices: 76352--76427 Score: 70
Period size: 16 Copynumber: 4.6 Consensus size: 16
76342 AATTTAACCA
76352 TATTTT-TTTATTTTT
1 TATTTTATTTATTTTT
76367 TATTTTATTTCATTTTT
1 TATTTTATTT-ATTTTT
76384 TA-TTTATTTTATTTTT
1 TATTTTA-TTTATTTTT
76400 ACTCAATTTTATTTA-TTTT
1 --T--ATTTTATTTATTTTT
76419 TA-TTTATTT
1 TATTTTATTT
76428 TATTACTATT
Statistics
Matches: 53, Mismatches: 0, Indels: 17
0.76 0.00 0.24
Matches are distributed among these distances:
14 7 0.13
15 7 0.13
16 13 0.25
17 12 0.23
18 1 0.02
19 4 0.08
20 5 0.09
21 4 0.08
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (16 bp):
TATTTTATTTATTTTT
Found at i:76389 original size:16 final size:16
Alignment explanation
Indices: 76352--76486 Score: 77
Period size: 17 Copynumber: 8.0 Consensus size: 16
76342 AATTTAACCA
76352 TATTT-TTTTATTTTT
1 TATTTATTTTATTTTT
*
76367 TATTTTATTTCATTTTT
1 TA-TTTATTTTATTTTT
76384 TATTTATTTTATTTTT
1 TATTTATTTTATTTTT
76400 ACTCAATTT-TATTTA-TTTT
1 --T--ATTTAT-TTTATTTTT
*
76419 TATTTATTTTATTACTAT
1 TATTTATTTTATT--TTT
76437 TA-TTATTTTAATATTTT
1 TATTTATTTT-AT-TTTT
76454 TA-TTA--TTATTTTT
1 TATTTATTTTATTTTT
76467 TCATGTTTATTTTCATTTTT
1 T-A--TTTATTTT-ATTTTT
76487 ACAATCTAAC
Statistics
Matches: 96, Mismatches: 4, Indels: 35
0.71 0.03 0.26
Matches are distributed among these distances:
13 5 0.05
14 3 0.03
15 12 0.12
16 18 0.19
17 29 0.30
18 7 0.07
19 8 0.08
20 14 0.15
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.73
Consensus pattern (16 bp):
TATTTATTTTATTTTT
Found at i:76956 original size:27 final size:27
Alignment explanation
Indices: 76916--76972 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
76906 CCCAAACCCA
* *
76916 AAGATAAAATGGAGGTCAAGACCTGAG
1 AAGATAAAATGGAGGCCAAGACCCGAG
*
76943 AAGAT-AAATCGGAGGCCCAGACCCGAG
1 AAGATAAAAT-GGAGGCCAAGACCCGAG
76970 AAG
1 AAG
76973 TCCAGCAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.42, C:0.18, G:0.30, T:0.11
Consensus pattern (27 bp):
AAGATAAAATGGAGGCCAAGACCCGAG
Found at i:79218 original size:103 final size:104
Alignment explanation
Indices: 79103--79311 Score: 377
Period size: 104 Copynumber: 2.0 Consensus size: 104
79093 ATTAAAAATA
*
79103 AAAAAAAAATACCTATTTTGTTGAAAAAATATCCTACCTATTTTG-TGAAAAAATCAATATA-TT
1 AAAAAAAAATACCTA-TTTGTTGAAAAAATATCATACCTATTTTGTTGAAAAAATCAATATATTT
79166 TTACTCCATTTTTAAAATTTTAAATTTGTCACTAATGGGT
65 TTACTCCATTTTTAAAATTTTAAATTTGTCACTAATGGGT
*
79206 AAAAAAACATACCTATTTGTTGAAAAAATATCATACCTATTTTGTTGAAAAAATCAATATATTTT
1 AAAAAAAAATACCTATTTGTTGAAAAAATATCATACCTATTTTGTTGAAAAAATCAATATATTTT
79271 TACTCCATTTTTAAAATTTTAAATTTGTCACTAATGGGT
66 TACTCCATTTTTAAAATTTTAAATTTGTCACTAATGGGT
79310 AA
1 AA
79312 TGTTGAAAAA
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
102 28 0.27
103 30 0.29
104 44 0.43
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (104 bp):
AAAAAAAAATACCTATTTGTTGAAAAAATATCATACCTATTTTGTTGAAAAAATCAATATATTTT
TACTCCATTTTTAAAATTTTAAATTTGTCACTAATGGGT
Found at i:79240 original size:24 final size:24
Alignment explanation
Indices: 79206--79259 Score: 85
Period size: 25 Copynumber: 2.3 Consensus size: 24
79196 ACTAATGGGT
79206 AAAAAA-ACATACCTA-TTTGTTG
1 AAAAAATACATACCTATTTTGTTG
79228 AAAAAATATCATACCTATTTTGTTG
1 AAAAAATA-CATACCTATTTTGTTG
79253 AAAAAAT
1 AAAAAAT
79260 CAATATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.21
23 1 0.03
24 8 0.28
25 14 0.48
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (24 bp):
AAAAAATACATACCTATTTTGTTG
Found at i:80189 original size:51 final size:51
Alignment explanation
Indices: 80055--80189 Score: 182
Period size: 51 Copynumber: 2.7 Consensus size: 51
80045 CATACTTATG
*
80055 CCAGTGTAAGTATGTGTTAAGTGCTACAC-TTTTTATTTTATTCACTCACA
1 CCAGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTCACTCACA
** *** *
80105 CCAGTGTAAGTATGCATTAAGTGTTATGTTTTTTTATTTTATTCACTTACA
1 CCAGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTCACTCACA
* *
80156 CCGGTGTAAATATGTGTTAAGTGTTACACTTTTT
1 CCAGTGTAAGTATGTGTTAAGTGTTACACTTTTT
80190 GTAGTGAATT
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
50 23 0.33
51 47 0.67
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (51 bp):
CCAGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTCACTCACA
Found at i:83678 original size:3 final size:3
Alignment explanation
Indices: 83672--83719 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
83662 GTCAAAAAAA
* *
83672 TAT TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT TCT AAT TA- TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
83717 TAT
1 TAT
83720 AATATTTGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:85390 original size:30 final size:30
Alignment explanation
Indices: 85287--85390 Score: 90
Period size: 30 Copynumber: 3.5 Consensus size: 30
85277 CCTTAAATTT
*
85287 TTTTAGTCTTTTAA-ATTCTAGTTTTTACTA
1 TTTTAGTCTTTTAAGATTC-ATTTTTTACTA
** *
85317 TTTT-GTCCATTAA-ATTTC-TGTTTTTACCA
1 TTTTAGTCTTTTAAGA-TTCAT-TTTTTACTA
* * *
85346 TTTTAGTATCTTAAGGTTCATTTTTTACTA
1 TTTTAGTCTTTTAAGATTCATTTTTTACTA
85376 TTTTAGTCTTTTAAG
1 TTTTAGTCTTTTAAG
85391 TTGTGATTTT
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
29 20 0.34
30 37 0.64
31 1 0.02
ACGTcount: A:0.22, C:0.12, G:0.09, T:0.58
Consensus pattern (30 bp):
TTTTAGTCTTTTAAGATTCATTTTTTACTA
Found at i:85401 original size:30 final size:31
Alignment explanation
Indices: 85287--85410 Score: 82
Period size: 30 Copynumber: 4.2 Consensus size: 31
85277 CCTTAAATTT
*
85287 TTTTAGTCTTTTAAATTCT-AGTTTTTACTA
1 TTTTAGTCTTTTAAGTTCTGAGTTTTTACTA
* * * *
85317 TTTT-GTCCATTAAATTTCT--GTTTTTACCA
1 TTTTAGT-CTTTTAAGTTCTGAGTTTTTACTA
* * *
85346 TTTTAGTATCTTAAGGTTC--ATTTTTTACTA
1 TTTTAGTCTTTTAA-GTTCTGAGTTTTTACTA
* **
85376 TTTTAGTCTTTTAAGTTGTGA-TTTTTGTTA
1 TTTTAGTCTTTTAAGTTCTGAGTTTTTACTA
85406 TTTTA
1 TTTTA
85411 AACCTTTAAA
Statistics
Matches: 72, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
29 21 0.29
30 50 0.69
31 1 0.01
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.60
Consensus pattern (31 bp):
TTTTAGTCTTTTAAGTTCTGAGTTTTTACTA
Found at i:87614 original size:27 final size:27
Alignment explanation
Indices: 87552--87601 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
87542 GGATCAACAT
87552 TTTTGCATATGCATTTGCATCTTTTCA
1 TTTTGCATATGCATTTGCATCTTTTCA
87579 TTTTGCATATGCATTT-CAT-TTTT
1 TTTTGCATATGCATTTGCATCTTTT
87602 AAGCATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 4 0.17
26 3 0.13
27 16 0.70
ACGTcount: A:0.18, C:0.16, G:0.10, T:0.56
Consensus pattern (27 bp):
TTTTGCATATGCATTTGCATCTTTTCA
Found at i:91552 original size:8 final size:8
Alignment explanation
Indices: 91527--91575 Score: 55
Period size: 9 Copynumber: 5.9 Consensus size: 8
91517 ACACTTGAAG
91527 AAGAATAAA
1 AAGAA-AAA
91536 AAGAAAAA
1 AAGAAAAA
*
91544 GAAAAAAAGA
1 -AAGAAAA-A
91554 AAGAAAAA
1 AAGAAAAA
91562 AAG-AAAA
1 AAGAAAAA
91569 AAGAAAA
1 AAGAAAA
91576 GGCAAAGGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
7 7 0.20
8 10 0.29
9 17 0.49
10 1 0.03
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:91568 original size:19 final size:18
Alignment explanation
Indices: 91535--91574 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
91525 AGAAGAATAA
*
91535 AAAGAAAAAGAAAAAAAG
1 AAAGAAAAAAAAAAAAAG
91553 AAAGAAAAAAAGAAAAAAG
1 AAAGAAAAAAA-AAAAAAG
91572 AAA
1 AAA
91575 AGGCAAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAAAAAAAAAG
Found at i:92673 original size:32 final size:32
Alignment explanation
Indices: 92609--92694 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 32
92599 ATCAATAGAT
* *
92609 GGCATCTTTGAAGATTCAACATTAAATGTTGG
1 GGCATCTTTGGAGATTCAACATTAAATATTGG
* * * *
92641 GGTATTTTTGGAGATTCAATATTGAATATTGG
1 GGCATCTTTGGAGATTCAACATTAAATATTGG
*
92673 GGCATCTTTGGGGATTCAACAT
1 GGCATCTTTGGAGATTCAACAT
92695 CCTGATACGA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.37
Consensus pattern (32 bp):
GGCATCTTTGGAGATTCAACATTAAATATTGG
Found at i:94085 original size:128 final size:127
Alignment explanation
Indices: 93749--94254 Score: 509
Period size: 127 Copynumber: 3.9 Consensus size: 127
93739 TGTCAACTTT
* * *
93749 AGATAACCAGTAGTCCTTATCACGTAGGAACAGTGTTATCACCCTTAGATGGCCAAAACTCTTCA
1 AGATAACCA-TCGTCCTCATCACGTAGGAACAGTGTTATCACCTTTAGATGGCCAAAACTCTTCA
* * * *
93814 TCACGTATGAACCGTGTCATCACCCGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCC
65 TCACGTATGAGCCGTGTCATCACCCGACCAGATCTCCTCATTATGTAGGAGTCGTGTCAACCC
* * * * * *
93877 TGGATAACCA-AGAT--TCATCATAGTATGAGCAGTGTTATCACCTTTAGATGGCCAGAACTCTT
1 -AGATAACCATCG-TCCTCATCA-CGTAGGAACAGTGTTATCACCTTTAGATGGCCAAAACTCTT
* * * * * **
93939 CATCATGTATGAGTCGTGTCATCAACTGACCATATCTCCTCATTATGTAGGAGTTATGTCAACCC
63 CATCACGTATGAGCCGTGTCATCACCCGACCAGATCTCCTCATTATGTAGGAGTCGTGTCAACCC
* * *
94004 AGATAGCCATCCGTCCTCATCATGTAGGAACCGTGTTATCACCTTTAGATGGCCATAAA-TCTTC
1 AGATAACCAT-CGTCCTCATCACGTAGGAACAGTGTTATCACCTTTAGATGGCCA-AAACTCTTC
* * * *
94068 ATCACGTATGAGCCGTGTCATCACCCGACCTGATCTTCTTATTATGTAGGAGTCGTGTCAACCTT
64 ATCACGTATGAGCCGTGTCATCACCCGACCAGATCTCCTCATTATGTAGGAGTCGTGTCAACC-C
* * *
94133 TGATAACCAGTCGTCCTCATCACGTAGGAACCGAGTTATCACCCTTCATAAAGATGGCCAAGAAC
1 AGATAACCA-TCGTCCTCATCACGTAGGAACAGTGTTATCA-CCTT--T--AGATGGCCAA-AAC
* * ** * * *
94198 TCTTCATCATGTATAAGAAGTGTTATTC-CCTGACTAGATCTCCTCATTATGTAGGAG
59 TCTTCATCACGTATGAGCCGTGTCA-TCACCCGACCAGATCTCCTCATTATGTAGGAG
94255 CTTTGTCATC
Statistics
Matches: 309, Mismatches: 51, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
126 12 0.04
127 93 0.30
128 89 0.29
129 51 0.17
130 5 0.02
132 1 0.00
133 1 0.00
134 11 0.04
135 44 0.14
136 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (127 bp):
AGATAACCATCGTCCTCATCACGTAGGAACAGTGTTATCACCTTTAGATGGCCAAAACTCTTCAT
CACGTATGAGCCGTGTCATCACCCGACCAGATCTCCTCATTATGTAGGAGTCGTGTCAACCC
Found at i:94469 original size:3 final size:3
Alignment explanation
Indices: 94461--94513 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
94451 GTCGAAAATA
* * * *
94461 TAT TAT TAT TAT TAT TAT AAA TAT TAT TAT TAT TAT TAT TCT AAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
94508 TAT TAT
1 TAT TAT
94514 AATATTTGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:99262 original size:24 final size:23
Alignment explanation
Indices: 99212--99255 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
99202 GGTTCTTTTA
*
99212 TTTTTTTAAATTATTATAAATAAT
1 TTTTTTTAAA-TAATATAAATAAT
99236 TTTTTTTAAA-AATATAAATA
1 TTTTTTTAAATAATATAAATA
99256 TTATTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
24 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTTTTAAATAATATAAATAAT
Found at i:104672 original size:27 final size:29
Alignment explanation
Indices: 104615--104673 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
104605 AAAATATATA
104615 ATTATGTAATTTATATTTTTTGTATTATT
1 ATTATGTAATTTATATTTTTTGTATTATT
*
104644 ATTATG-AATTGTA-ATTTTTT-TATTTTT
1 ATTATGTAATT-TATATTTTTTGTATTATT
104671 ATT
1 ATT
104674 TTTATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 9 0.32
28 11 0.39
29 8 0.29
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (29 bp):
ATTATGTAATTTATATTTTTTGTATTATT
Found at i:107364 original size:2 final size:2
Alignment explanation
Indices: 107359--107415 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
107349 ACACACACAC
107359 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107401 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
107416 ACCTGTCATC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:114630 original size:23 final size:24
Alignment explanation
Indices: 114578--114635 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
114568 TCTCTTGTAT
**
114578 TTTTCTTCTCTTGACATTGATGAA
1 TTTTCTTCTCTCAACATTGATGAA
*
114602 TTTTCTTCTCTCAATATTGAT-AA
1 TTTTCTTCTCTCAACATTGATGAA
114625 TTTTCTTCTCT
1 TTTTCTTCTCT
114636 TTTGCTCGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.19, C:0.19, G:0.07, T:0.55
Consensus pattern (24 bp):
TTTTCTTCTCTCAACATTGATGAA
Found at i:117401 original size:2 final size:2
Alignment explanation
Indices: 117394--117433 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
117384 ATATCTTTTA
*
117394 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
117434 TGAAAACATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:117646 original size:24 final size:24
Alignment explanation
Indices: 117614--117700 Score: 88
Period size: 24 Copynumber: 3.7 Consensus size: 24
117604 GATATCAGAA
*
117614 ATCAAAACAGAATTCAGATAAGAT
1 ATCAGAACAGAATTCAGATAAGAT
* * *
117638 ATCAGAACAGAATCCAGATCAGAA
1 ATCAGAACAGAATTCAGATAAGAT
* *
117662 ATCAGAACAGAA-TCAGGTCATG-T
1 ATCAGAACAGAATTCAGAT-AAGAT
*
117685 ATCAGAACATAATTCA
1 ATCAGAACAGAATTCA
117701 AGTCGGAAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
23 15 0.29
24 36 0.71
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (24 bp):
ATCAGAACAGAATTCAGATAAGAT
Found at i:117655 original size:12 final size:11
Alignment explanation
Indices: 117613--117677 Score: 60
Period size: 12 Copynumber: 5.5 Consensus size: 11
117603 AGATATCAGA
*
117613 AATCAAAACAG
1 AATCAGAACAG
117624 AATTCAGATA-AG
1 AA-TCAGA-ACAG
117636 ATATCAGAACAG
1 A-ATCAGAACAG
*
117648 AATCCAGATCAG
1 AAT-CAGAACAG
117660 AAATCAGAACAG
1 -AATCAGAACAG
117672 AATCAG
1 AATCAG
117678 GTCATGTATC
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
11 11 0.24
12 29 0.64
13 5 0.11
ACGTcount: A:0.52, C:0.17, G:0.15, T:0.15
Consensus pattern (11 bp):
AATCAGAACAG
Found at i:117710 original size:47 final size:48
Alignment explanation
Indices: 117607--117714 Score: 123
Period size: 47 Copynumber: 2.3 Consensus size: 48
117597 AAACGGAGAT
* *
117607 ATCAGAAATCAAAACAGAATTCAGATAAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAGAACAGAATTCAGATAAGATATCAGAACAGAATCAAG
* * *
117655 ATCAGAAATCAGAACAGAA-TCAGGTCATG-TATCAGAACATAATTCAAG
1 ATCAGAAATCAGAACAGAATTCAGAT-AAGATATCAGAACAGAA-TCAAG
*
117703 -TCGGAAATCAGA
1 ATCAGAAATCAGA
117715 TAAAATATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
47 28 0.54
48 24 0.46
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.19
Consensus pattern (48 bp):
ATCAGAAATCAGAACAGAATTCAGATAAGATATCAGAACAGAATCAAG
Found at i:120438 original size:157 final size:159
Alignment explanation
Indices: 120152--120467 Score: 618
Period size: 157 Copynumber: 2.0 Consensus size: 159
120142 GTCGACAACG
120152 AACACGATGGTTGTTTCGGTTCGTCAAATAGTGGCCGGACGGTGAGTAGATCGGAATGGAAAGGA
1 AACACGATGGTTGTTTCGGTTCGTCAAATAGTGGCCGGACGGTGAGTAGATCGGAATGGAAAGGA
120217 GAGTCAACATGGGAGGGAAATTGGGGATAATTCTGTAGAATATACGGGAAATAGGGGTTTATAAT
66 GAGTCAACATGGGAGGGAAATTGGGGATAATTCTGTAGAATATACGGGAAATAGGGGTTTATAAT
120282 TCTCTTC-AAA-AAAAATGGTTAAACTAT
131 TCTCTTCAAAATAAAAATGGTTAAACTAT
120309 AACACGATGGTTGTTTCGGTTCGTCAAATAGTGGCCGGACGGTGAGTAGATCGGAATGGAAAGGA
1 AACACGATGGTTGTTTCGGTTCGTCAAATAGTGGCCGGACGGTGAGTAGATCGGAATGGAAAGGA
120374 GAGTCAACATGGGAGGGAAATTGGGGATAATTCTGTAGAATATACGGGAAATAGGGGTTTATAAT
66 GAGTCAACATGGGAGGGAAATTGGGGATAATTCTGTAGAATATACGGGAAATAGGGGTTTATAAT
120439 TCTCTTCAAAATAAAAATGGTTAAACTAT
131 TCTCTTCAAAATAAAAATGGTTAAACTAT
120468 GAGTTTAGTC
Statistics
Matches: 157, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
157 137 0.87
158 3 0.02
159 17 0.11
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (159 bp):
AACACGATGGTTGTTTCGGTTCGTCAAATAGTGGCCGGACGGTGAGTAGATCGGAATGGAAAGGA
GAGTCAACATGGGAGGGAAATTGGGGATAATTCTGTAGAATATACGGGAAATAGGGGTTTATAAT
TCTCTTCAAAATAAAAATGGTTAAACTAT
Found at i:121020 original size:2 final size:2
Alignment explanation
Indices: 121013--121037 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121003 AAAATATTTC
121013 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
121038 AAGCAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124553 original size:17 final size:18
Alignment explanation
Indices: 124531--124576 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
124521 ATATATCGGA
*
124531 TACATAACAAACT-AATT
1 TACATAAAAAACTGAATT
124548 TACATAAAAAACTGAATT
1 TACATAAAAAACTGAATT
124566 TA-ATCAAAAAA
1 TACAT-AAAAAA
124577 AACCAAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.26
Consensus pattern (18 bp):
TACATAAAAAACTGAATT
Found at i:126330 original size:21 final size:20
Alignment explanation
Indices: 126306--126354 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
126296 CTCAAAATCA
* *
126306 TTTTTCAAAATTTCATTTTG
1 TTTTTCAAAATCTAATTTTG
126326 TTTTTCAAAATCTAATTTTG
1 TTTTTCAAAATCTAATTTTG
*
126346 -ATTTCAAAA
1 TTTTTCAAAA
126355 GAAAATCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (20 bp):
TTTTTCAAAATCTAATTTTG
Found at i:128692 original size:24 final size:24
Alignment explanation
Indices: 128641--128732 Score: 91
Period size: 23 Copynumber: 3.9 Consensus size: 24
128631 GTCGAGGGTT
* * *
128641 CTATTTGGTCATTCGGGA-TAAAC
1 CTATGTGGTCCTTCGGGACAAAAC
128664 CTATGTGGTCCTTCGGGACAAAAC
1 CTATGTGGTCCTTCGGGACAAAAC
* * *
128688 CTATGTGATCCTTCGAGATAAAA-
1 CTATGTGGTCCTTCGGGACAAAAC
*
128711 CTACGCT-GTCCTTCGGGACAAA
1 CTATG-TGGTCCTTCGGGACAAA
128733 TATATGGCAC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
23 32 0.56
24 25 0.44
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
CTATGTGGTCCTTCGGGACAAAAC
Found at i:130317 original size:20 final size:20
Alignment explanation
Indices: 130288--130330 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
130278 ATTTCACCAC
*
130288 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
130308 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
130328 ATG
1 ATG
130331 GAATTTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:138881 original size:20 final size:20
Alignment explanation
Indices: 138852--138894 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
138842 ATTTCACCAC
*
138852 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
138872 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
138892 ATG
1 ATG
138895 GGCTTTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:145284 original size:18 final size:18
Alignment explanation
Indices: 145261--145301 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
145251 AGGAATTTGA
145261 TCCTCTGGCT-GTGCTTGT
1 TCCTCT-GCTCGTGCTTGT
145279 TCCTCTGCTCGTGCTTGT
1 TCCTCTGCTCGTGCTTGT
145297 TCCTC
1 TCCTC
145302 GTGTTGTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.00, C:0.34, G:0.22, T:0.44
Consensus pattern (18 bp):
TCCTCTGCTCGTGCTTGT
Found at i:146933 original size:23 final size:23
Alignment explanation
Indices: 146904--146976 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
146894 CCCTGTGGGT
*
146904 GGGAATCGGTTCCCCTTCAAAGG
1 GGGAATCGGTTCCCCTTCAAGGG
146927 GGGAATCGGTTCCCCTTCAAGGGG
1 GGGAATCGGTTCCCCTTCAA-GGG
*
146951 GGGTATCGGTTCCCCTTCAAGGG
1 GGGAATCGGTTCCCCTTCAAGGG
146974 GGG
1 GGG
146977 GTATCGATTC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.16, C:0.25, G:0.37, T:0.22
Consensus pattern (23 bp):
GGGAATCGGTTCCCCTTCAAGGG
Found at i:146989 original size:23 final size:24
Alignment explanation
Indices: 146908--146988 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
146898 GTGGGTGGGA
* *
146908 ATCGGTTCCCCTTCAA-AGGGGGA
1 ATCGGTTCCCCTTCAAGGGGGGGT
146931 ATCGGTTCCCCTTCAAGGGGGGGT
1 ATCGGTTCCCCTTCAAGGGGGGGT
146955 ATCGGTTCCCCTTCAAGGGGGGGT
1 ATCGGTTCCCCTTCAAGGGGGGGT
*
146979 ATCGATTCCC
1 ATCGGTTCCC
146989 TCTGCACTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 16 0.30
24 38 0.70
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.25
Consensus pattern (24 bp):
ATCGGTTCCCCTTCAAGGGGGGGT
Found at i:150839 original size:22 final size:21
Alignment explanation
Indices: 150797--150836 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
150787 GAGTTTGTTT
*
150797 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
150818 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
150837 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:155186 original size:24 final size:24
Alignment explanation
Indices: 155135--155226 Score: 136
Period size: 23 Copynumber: 3.9 Consensus size: 24
155125 GTCGATGGTT
*
155135 CTATGTTGTCCTTC-GAGAC-AAAC
1 CTATGTGGTCCTTCAG-GACAAAAC
155158 CTATGTGGTCCTTCAGGACAAAAC
1 CTATGTGGTCCTTCAGGACAAAAC
155182 CTATGTGGTCCTTCAGGACAAAA-
1 CTATGTGGTCCTTCAGGACAAAAC
*
155205 CTATGTGGTCCTTCGGGACAAA
1 CTATGTGGTCCTTCAGGACAAA
155227 TATGTGGCAC
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
23 37 0.57
24 28 0.43
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
CTATGTGGTCCTTCAGGACAAAAC
Found at i:155209 original size:47 final size:47
Alignment explanation
Indices: 155135--155226 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
155125 GTCGATGGTT
* *
155135 CTATGTTGTCCTTCGAGACAAACCTATGTGGTCCTTCAGGACAAAAC
1 CTATGTGGTCCTTCGAGACAAAACTATGTGGTCCTTCAGGACAAAAC
*
155182 CTATGTGGTCCTTC-AGGACAAAACTATGTGGTCCTTCGGGACAAA
1 CTATGTGGTCCTTCGA-GACAAAACTATGTGGTCCTTCAGGACAAA
155227 TATGTGGCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.02
47 40 0.98
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (47 bp):
CTATGTGGTCCTTCGAGACAAAACTATGTGGTCCTTCAGGACAAAAC
Found at i:155693 original size:15 final size:14
Alignment explanation
Indices: 155667--155706 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
155657 TAAAAAGATT
155667 TAATAA-AATAAAA
1 TAATAATAATAAAA
155680 TAGATAATAATAAAA
1 TA-ATAATAATAAAA
155695 TAATAAATAATA
1 TAAT-AATAATA
155707 GTAGTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.08
14 6 0.25
15 16 0.67
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
TAATAATAATAAAA
Found at i:155777 original size:17 final size:18
Alignment explanation
Indices: 155744--155785 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
155734 TTTGTTTTTA
*
155744 AAATAAAATATAATAATT
1 AAATAAAAGATAATAATT
155762 AAATAAAAGA-AATAATT
1 AAATAAAAGATAATAATT
155779 AAATAAA
1 AAATAAA
155786 TAATTTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
AAATAAAAGATAATAATT
Found at i:157158 original size:21 final size:20
Alignment explanation
Indices: 157131--157187 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
157121 TATCTTATAT
157131 CACTATAAATAAAATAATAAG
1 CACTATAAATAAAATAAT-AG
* **
157152 CATTATAAATATTATAATAG
1 CACTATAAATAAAATAATAG
*
157172 CACTATGAATAAAATA
1 CACTATAAATAAAATA
157188 TAATGAAGTG
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (20 bp):
CACTATAAATAAAATAATAG
Done.