genome.fa.s7802.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007802.1 Hibiscus syriacus cultivar Beakdansim tig00110120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  449556

Tables:   1   2   3   

This is table  3  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356686--356729	13	3.5	13	81	6	54	29	20	15	34	1.94
356695--356738	13	3.5	13	84	3	63	31	20	9	38	1.84
356708--356939	85	2.7	85	85	2	261	32	19	15	31	1.93
357701--357758	28	2.1	28	90	0	89	27	17	22	32	1.96
357702--357788	45	1.9	45	81	9	106	27	17	20	34	1.95
369128--369169	15	2.7	15	88	3	57	11	19	11	57	1.65
375315--375436	39	3.2	38	82	8	140	30	23	28	17	1.97
375336--375437	39	2.6	39	87	1	143	30	21	31	16	1.96
381172--381210	16	2.4	16	86	0	60	56	15	0	28	1.40
381604--381709	39	2.7	41	81	8	123	33	22	26	16	1.96
381603--381730	39	3.3	38	77	6	114	32	21	28	17	1.96
383309--383505	53	3.8	51	82	4	214	42	4	29	23	1.74
383354--383505	52	2.9	53	88	1	216	41	3	29	25	1.71
383317--383505	105	1.8	105	85	0	270	43	4	29	22	1.74
383317--383559	53	4.6	53	78	4	168	44	4	28	22	1.73
383338--383579	105	2.3	105	83	5	267	40	5	29	24	1.77
383769--383973	100	2.1	97	85	7	270	30	5	31	33	1.80
384271--384379	22	4.8	22	68	18	62	39	3	5	51	1.43
384310--384347	18	2.1	18	90	0	58	34	5	7	52	1.53
384412--384445	18	1.9	18	88	5	52	41	0	0	58	0.98
388592--388633	22	2.0	22	90	4	68	57	7	2	33	1.39
389215--389248	14	2.3	15	90	5	52	50	20	14	14	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390272--390301	3	10.3	3	92	7	53	63	0	0	36	0.95
390497--390853	134	2.7	133	84	2	473	25	18	30	25	1.98
390863--390943	28	2.9	28	85	7	94	50	13	12	23	1.75
391123--391182	30	2.0	31	86	3	86	43	11	8	36	1.71
391620--391744	67	1.9	66	85	3	171	42	12	15	29	1.84
391643--391865	120	1.8	122	82	6	292	39	12	16	31	1.85
392577--392719	36	4.0	35	85	2	178	40	10	16	32	1.83
392585--392717	71	1.9	72	88	1	205	38	11	16	33	1.84
393087--393121	16	2.2	16	89	0	52	25	2	22	48	1.64
398542--398583	22	2.0	22	90	4	68	57	7	2	33	1.39
400216--400256	3	13.3	3	94	5	73	63	0	0	36	0.95
402604--402683	32	2.6	30	77	16	83	31	16	12	40	1.85
403013--403076	20	3.2	20	84	2	76	35	10	15	37	1.83
403342--403587	124	2.0	124	95	0	449	35	3	15	45	1.64
403935--404001	20	3.4	19	71	8	62	46	17	2	32	1.64
403924--404009	40	2.2	40	97	0	163	43	16	4	36	1.69
403924--404025	40	2.5	39	89	6	116	44	16	3	35	1.67
404972--405018	24	1.9	25	82	4	60	80	2	2	14	0.89
404973--405020	7	6.7	7	77	13	53	81	2	2	14	0.88
409036--409089	28	1.9	28	81	7	65	51	9	3	35	1.52
410331--410404	3	24.3	3	73	22	57	60	0	4	35	1.15
426441--426479	16	2.4	16	86	0	51	71	5	12	10	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434625--434686	32	1.9	32	83	0	79	30	16	14	38	1.88
441578--441623	13	3.5	13	87	0	74	34	19	15	30	1.93
448581--448623	17	2.5	17	92	7	70	37	34	11	16	1.85

Tables:   1   2   3

The End!