genome.fa.s7809.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007809.1 Hibiscus syriacus cultivar Beakdansim tig00110130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109776

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437--1493	27	2.1	27	93	6	98	45	3	19	31	1.67
4052--4150	2	49.5	2	100	0	198	50	0	0	49	1.00
5331--5400	7	8.9	7	74	22	59	17	4	1	77	1.01
5330--5397	26	2.7	25	80	13	77	17	4	1	76	1.03
5330--5406	17	4.7	16	73	12	75	16	3	1	77	0.98
5330--5406	24	3.1	25	78	9	77	16	3	1	77	0.98
5362--5413	16	3.1	16	80	8	59	23	0	0	76	0.78
6495--6599	19	5.2	19	79	13	102	35	4	27	32	1.78
7017--7290	21	13.4	21	77	6	240	33	24	19	21	1.97
7009--7363	61	5.9	59	76	7	297	35	22	19	22	1.96
7057--7363	101	3.1	102	86	5	387	34	23	19	22	1.96
7017--7363	40	8.7	40	76	9	253	35	23	19	22	1.96
7010--7354	21	17.3	19	73	12	140	35	22	20	22	1.96
8529--8569	21	2.0	21	85	9	57	56	19	2	21	1.54
12108--12143	18	2.0	18	88	0	54	25	19	36	19	1.95
13122--13162	21	2.0	21	85	9	57	56	19	2	21	1.54
14935--14975	3	12.7	3	85	14	55	0	36	0	63	0.95
14935--14975	10	4.2	10	87	3	57	0	36	0	63	0.95
14936--14984	7	7.3	7	86	6	66	0	40	0	59	0.98
14978--15038	3	20.3	3	100	0	122	0	65	0	34	0.93
21348--21454	54	2.0	54	88	0	160	31	17	2	47	1.62
27656--27708	15	3.6	15	82	5	72	33	20	7	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28306--28358	21	2.5	21	81	0	70	20	22	20	35	1.96
28348--28403	20	2.8	20	97	0	103	35	16	21	26	1.94
28348--28480	20	6.7	20	85	4	101	32	21	19	27	1.97
28657--28767	48	2.4	44	81	13	143	28	42	11	17	1.84
28657--28767	22	4.9	22	82	12	143	28	42	11	17	1.84
29164--29228	20	3.2	20	82	0	76	16	18	21	43	1.88
29200--29240	20	2.0	20	95	0	73	12	14	17	56	1.68
29204--29247	20	2.2	20	87	0	61	13	13	18	54	1.71
30967--31017	18	2.8	18	93	0	93	35	19	3	41	1.70
31167--31211	20	2.2	20	88	0	63	37	26	17	17	1.93
31766--31852	21	4.1	21	74	0	84	20	36	19	22	1.95
31774--31856	42	2.0	42	83	4	105	21	38	19	20	1.93
32626--32738	20	5.7	20	81	6	131	34	21	18	25	1.96
32929--32989	14	4.3	14	77	8	61	47	14	0	37	1.45
33657--33806	20	7.8	20	75	8	141	28	18	20	33	1.96
33621--33806	54	3.3	54	77	8	201	26	16	22	34	1.95
36262--36315	24	2.2	24	96	0	99	42	20	16	20	1.89
36262--36329	24	2.8	24	86	0	64	39	19	16	25	1.91
37136--37243	20	5.4	20	94	0	171	25	20	26	27	1.99
37137--37270	60	2.2	59	82	3	153	26	20	23	29	1.99
39163--39219	23	2.4	23	79	5	60	43	1	3	50	1.29
41971--42037	3	21.7	3	82	11	82	37	1	1	59	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42345--42389	20	2.2	20	96	0	81	33	11	26	28	1.91
42778--43167	146	2.7	144	79	4	415	34	22	22	20	1.96
46997--47021	4	6.2	4	100	0	50	24	0	0	76	0.80
47710--47757	14	3.5	14	82	2	53	47	12	0	39	1.41
52555--52598	23	2.0	23	86	4	63	61	18	9	11	1.55
53022--53073	21	2.5	21	81	3	61	38	19	25	17	1.93
53062--53175	20	5.7	20	83	6	113	31	25	18	24	1.97
53059--53175	61	1.9	61	85	0	162	33	24	17	23	1.97
53710--53751	19	2.2	19	86	0	57	50	28	16	4	1.66
53747--53859	20	6.1	19	76	13	92	13	24	20	41	1.88
55546--55760	94	2.3	94	92	1	360	20	13	19	47	1.82
56071--56164	42	2.2	42	81	7	102	23	34	21	21	1.97
57524--57559	14	2.6	14	95	0	63	30	0	25	44	1.54
57666--57732	19	3.8	19	77	18	81	44	20	22	11	1.84
57741--57867	33	3.9	32	84	8	175	14	21	19	44	1.87
57743--57867	19	7.4	18	64	24	67	15	20	19	44	1.86
57734--57866	66	2.0	66	94	0	230	16	21	19	42	1.89
60130--60154	12	2.1	12	100	0	50	0	28	0	72	0.86
60329--60382	24	2.2	24	90	0	81	38	20	16	24	1.92
61161--61283	33	3.7	33	86	1	156	45	16	23	14	1.84
61296--61356	19	3.5	19	72	21	69	14	21	18	45	1.84
61284--61356	33	2.2	33	90	0	110	13	19	19	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61580--61637	20	2.9	20	92	0	98	36	24	24	15	1.94
61643--61713	33	2.2	33	81	0	79	19	16	21	42	1.89
61656--61733	33	2.4	33	86	0	102	12	20	21	44	1.85
61827--61864	14	2.7	14	87	0	58	47	23	0	28	1.52
63707--63861	20	8.6	19	71	18	89	43	23	19	13	1.86
63782--63839	14	3.9	14	75	16	62	50	24	15	10	1.75
63766--63856	32	2.8	33	91	3	157	48	21	17	12	1.80
63873--63930	14	3.9	14	79	16	71	10	17	24	48	1.78
63868--63946	32	2.4	33	95	2	142	11	18	22	46	1.81
63931--63974	20	2.2	20	88	4	63	18	25	20	36	1.95
65843--65896	20	2.7	20	88	0	81	38	25	18	16	1.92
66140--66183	22	2.0	22	95	0	79	18	15	45	20	1.85
66376--66423	20	2.4	20	92	0	78	25	20	29	25	1.99
66432--66485	20	2.7	20	97	0	99	25	18	24	31	1.97
66351--66488	61	2.3	61	84	0	186	23	17	23	35	1.95
66351--66506	61	2.6	61	82	2	170	23	18	23	35	1.96
66474--66525	21	2.5	21	84	3	70	17	23	19	40	1.91
66535--66585	21	2.4	21	96	0	93	35	33	17	13	1.89
74451--74511	21	3.1	19	86	6	77	32	6	9	50	1.61
79845--79881	19	1.9	19	100	0	74	43	13	10	32	1.79
85190--85766	106	5.5	106	94	0	940	22	18	25	33	1.96
85943--86041	36	2.7	37	87	1	137	38	17	20	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86111--86186	39	1.9	39	83	0	98	36	13	23	26	1.91
86216--86383	37	4.8	37	66	19	124	36	14	19	29	1.91
86083--86383	102	2.9	102	90	3	451	35	13	20	30	1.91
86317--86401	37	2.3	38	79	2	91	35	14	20	30	1.92
86366--86555	72	2.6	72	82	2	229	40	14	16	28	1.88
90346--90385	21	1.9	21	89	0	62	10	25	40	25	1.86
96952--97032	22	3.7	22	93	0	126	19	11	30	38	1.87
97666--97728	24	2.8	23	81	13	69	0	14	7	77	0.97
97666--97730	22	2.9	23	80	14	73	0	15	9	75	1.04
99654--99683	5	5.8	5	92	7	51	80	0	3	16	0.85
102655--102697	18	2.4	18	88	0	59	20	0	2	76	0.89

Tables:   1

The End!