genome.fa.s7810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007810.1 Hibiscus syriacus cultivar Beakdansim tig00110134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70660

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4601--4640	15	2.7	15	92	0	62	22	15	25	37	1.93
4720--4766	16	2.9	16	93	0	85	31	19	10	38	1.86
15829--15935	34	3.1	33	78	14	85	34	0	3	61	1.14
15862--15940	34	2.4	34	85	8	101	37	0	1	60	1.05
17665--17712	21	2.3	21	85	0	60	25	39	12	22	1.89
17703--17809	21	5.1	21	84	8	94	17	30	25	26	1.97
17716--17809	42	2.2	42	87	7	129	17	31	27	23	1.96
18327--18405	28	2.8	28	88	5	106	54	1	2	41	1.22
18327--18421	28	3.2	28	75	16	91	53	2	3	41	1.28
18347--18421	34	2.2	34	87	2	105	53	2	4	40	1.34
18822--19706	128	6.9	128	95	0	1497	32	19	24	22	1.98
27352--27508	68	2.3	68	97	1	298	44	8	14	31	1.76
29295--29382	31	2.9	31	88	6	119	44	6	6	42	1.57
29780--30148	20	18.5	20	85	4	458	34	26	18	20	1.96
30830--30876	24	2.0	24	87	8	69	25	14	21	38	1.92
31051--31075	12	2.1	12	100	0	50	72	0	28	0	0.86
33357--33677	19	18.4	19	78	18	369	47	18	20	14	1.83
33357--33658	33	8.8	33	84	12	323	47	18	20	13	1.83
33357--33677	52	6.2	52	84	12	378	47	18	20	14	1.83
33585--33639	14	3.6	14	78	21	65	49	20	20	10	1.78
33385--33699	85	3.6	85	85	10	442	46	17	21	14	1.83
33706--33807	19	5.6	19	85	12	151	14	23	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33913--33949	14	2.6	14	91	0	65	45	21	0	32	1.52
35924--35980	14	3.7	14	77	20	60	45	22	21	10	1.82
35905--35997	33	2.8	33	95	0	168	47	21	20	10	1.80
35868--36002	19	7.6	19	76	16	128	45	23	19	11	1.82
35998--36126	19	7.3	19	75	17	125	8	17	28	45	1.77
35998--36089	33	2.8	33	93	3	150	7	18	28	45	1.76
36158--36624	93	5.0	93	99	0	918	46	19	12	21	1.83
36158--36624	185	2.5	186	99	0	918	46	19	12	21	1.83
38329--38415	14	5.5	14	73	24	75	42	22	25	9	1.83
38321--38435	33	3.5	33	93	0	203	44	20	25	9	1.82
38328--38440	19	6.8	18	70	23	79	42	22	25	9	1.84
38452--38506	14	3.6	14	73	21	56	9	25	23	41	1.83
38436--38506	33	2.2	33	94	0	124	8	22	25	43	1.81
38447--38528	33	2.5	33	89	2	119	9	25	21	42	1.84
38459--38534	20	4.2	20	69	22	67	11	25	18	44	1.83
38623--38693	33	2.2	33	92	0	115	47	18	22	11	1.80
38874--38928	22	2.5	22	81	0	74	20	16	40	23	1.91
39074--39266	20	9.6	20	82	5	219	19	19	25	35	1.95
39074--39266	60	3.2	60	83	0	251	19	19	25	35	1.95
39322--39373	20	2.6	20	96	0	95	21	13	26	38	1.90
39377--39429	19	2.8	19	100	0	106	9	16	22	50	1.74
43230--43258	14	2.0	15	93	6	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46517--46543	13	2.1	13	100	0	54	44	14	7	33	1.73
49338--49395	18	3.3	18	83	9	75	34	6	29	29	1.83
59523--59669	67	2.2	64	81	10	154	45	10	6	37	1.64
59800--59848	14	3.8	13	82	15	57	44	0	2	53	1.12
59799--59839	12	3.2	12	83	12	55	48	0	0	51	1.00
62266--62309	23	1.9	23	100	0	88	31	18	13	36	1.90
62264--62315	23	2.3	23	86	0	86	32	17	11	38	1.85
63269--63301	18	1.9	18	88	11	52	30	0	0	69	0.88
67723--67760	20	1.9	20	100	0	76	36	10	28	23	1.88
67914--67988	38	2.0	37	84	5	98	48	4	1	46	1.29

Tables:   1

The End!