genome.fa.s7811.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007811.1 Hibiscus syriacus cultivar Beakdansim tig00110139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68359

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31--87	30	1.9	30	96	0	105	59	5	14	21	1.54
1909--1958	22	2.2	23	86	10	68	14	14	12	60	1.60
13742--13782	18	2.3	18	91	4	66	29	4	2	63	1.28
15463--15502	18	2.2	18	100	0	80	25	32	17	25	1.97
18148--18193	14	3.3	14	82	11	51	60	2	0	36	1.09
21782--22319	202	2.7	196	84	7	682	34	20	13	31	1.91
27484--27703	110	2.0	110	97	0	413	18	25	28	28	1.98
27984--28048	18	3.6	18	100	0	130	24	15	35	24	1.94
31405--31823	8	56.5	8	67	20	126	40	3	5	50	1.41
31447--31605	37	4.3	37	95	2	259	39	3	5	50	1.44
31603--31667	31	2.1	31	97	0	121	43	1	6	49	1.37
31623--31834	76	2.8	76	81	14	280	40	2	5	50	1.40
31405--31823	14	30.9	14	72	16	235	40	3	5	50	1.41
32323--32347	6	4.2	6	100	0	50	20	64	0	16	1.30
34083--34439	171	2.1	172	89	2	549	36	18	5	39	1.74
34897--34940	23	1.9	23	100	0	88	25	40	25	9	1.84
34971--35013	22	2.0	22	95	0	77	16	39	13	30	1.87
34974--35023	22	2.3	22	85	0	73	16	36	14	34	1.88
35045--35129	34	2.5	34	96	0	152	35	24	24	15	1.94
41001--41036	2	18.0	2	100	0	72	50	0	0	50	1.00
44969--45044	37	2.1	37	92	0	125	34	30	9	26	1.87
47420--47501	37	2.2	37	84	4	103	37	32	8	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47430--47505	37	2.1	37	92	0	125	34	30	9	26	1.87
50478--50504	13	2.1	13	100	0	54	25	22	14	37	1.93
56501--56533	17	1.9	17	93	0	57	57	0	9	33	1.30
57773--57821	3	16.3	3	86	0	71	59	6	0	34	1.22
59239--59271	17	2.0	16	94	5	57	36	3	0	60	1.12
65230--65323	32	2.9	33	77	13	81	41	27	12	18	1.86

Tables:   1

The End!