genome.fa.s7812.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007812.1 Hibiscus syriacus cultivar Beakdansim tig00110140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  304742

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568--2218	182	3.6	183	95	2	1143	33	16	14	35	1.89
3676--3762	3	29.0	3	77	0	84	24	34	5	35	1.79
3676--3777	18	5.7	18	79	0	87	22	34	6	36	1.81
3684--3774	42	2.2	42	91	0	146	21	35	7	35	1.83
5354--6368	198	5.1	198	97	1	1898	30	16	15	36	1.90
6487--6533	18	2.6	18	90	6	69	55	10	2	31	1.46
14311--14356	22	2.0	23	83	12	58	30	8	26	34	1.86
15139--15201	32	2.0	33	84	12	87	25	4	26	42	1.75
22034--22142	24	4.5	24	79	4	112	22	8	17	52	1.71
22034--22087	12	4.5	13	75	13	53	22	9	14	53	1.69
22032--22140	48	2.3	49	82	6	134	21	9	17	52	1.72
24995--26215	45	27.0	45	90	2	1883	40	10	22	25	1.86
24995--26211	497	2.4	497	97	0	2247	41	10	22	25	1.86
26105--26175	22	3.2	22	61	11	54	38	9	25	26	1.87
26543--26692	81	1.9	81	89	0	237	36	10	23	29	1.88
28657--28699	2	21.5	2	100	0	86	51	0	0	48	1.00
31303--31573	45	6.0	45	90	1	411	41	10	21	26	1.86
31303--31625	90	3.6	90	88	3	445	42	10	21	25	1.85
31972--32138	81	2.1	81	87	0	235	35	10	23	30	1.89
34669--34714	20	2.3	20	92	0	74	45	17	10	26	1.81
35416--35456	14	2.7	16	75	24	52	53	9	7	29	1.60
38369--38419	21	2.5	21	87	3	68	21	19	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38369--38431	21	3.2	20	78	8	67	20	20	20	38	1.94
45664--45871	104	2.0	104	92	1	346	25	24	16	33	1.96
51200--51263	20	3.0	20	88	6	83	34	23	21	20	1.97
53267--53304	20	2.0	20	89	5	60	47	5	13	34	1.65
54234--54270	14	2.6	14	100	0	74	24	5	8	62	1.44
59039--59105	23	2.8	24	79	6	82	79	7	13	0	0.94
59050--59105	14	4.4	13	74	19	55	76	7	16	0	0.99
59039--59112	22	3.2	22	76	16	69	77	8	13	1	1.06
67296--67377	15	5.5	15	85	2	112	39	7	18	35	1.78
67296--67377	30	2.8	30	92	1	130	39	7	18	35	1.78
67291--67377	45	2.0	44	90	2	138	41	6	18	33	1.77
67360--67409	20	2.5	20	93	0	91	40	10	14	36	1.79
67577--67675	27	3.4	29	79	12	89	51	2	1	45	1.19
67575--67675	29	3.6	29	77	14	86	51	1	0	45	1.19
67660--67719	15	3.8	16	70	16	52	46	0	1	51	1.10
67682--67736	27	2.0	28	86	13	78	49	0	0	50	1.00
67652--67799	50	3.0	48	74	13	122	47	0	2	49	1.20
67939--68050	42	2.7	42	91	4	181	47	15	19	17	1.83
72711--72735	13	1.9	13	100	0	50	8	0	20	72	1.10
74585--74611	13	2.1	13	100	0	54	48	14	0	37	1.45
80712--80754	21	2.0	21	82	8	52	27	13	4	53	1.60
83260--83299	13	3.1	13	100	0	80	47	15	0	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87020--87049	14	2.1	14	100	0	60	76	0	0	23	0.78
94148--94205	25	2.3	25	93	0	98	48	10	24	17	1.78
97706--97784	19	4.2	19	75	0	68	37	8	20	32	1.83
97832--97883	25	2.1	25	82	7	61	48	0	26	25	1.52
101702--101752	20	2.6	20	93	3	86	35	13	5	45	1.68
105712--105761	20	2.5	20	90	3	75	38	10	6	46	1.62
106287--106323	4	8.8	4	94	5	56	24	21	0	54	1.45
106835--106884	24	2.1	23	85	3	64	14	20	10	56	1.66
108554--108771	54	4.1	54	82	8	268	38	15	10	35	1.82
112393--112593	55	3.7	55	89	2	307	32	13	20	33	1.91
112394--112608	109	2.0	110	87	4	319	34	13	20	32	1.90
112806--113554	68	11.0	67	85	4	901	32	13	23	30	1.94
112806--113531	205	3.6	205	85	3	899	32	14	23	30	1.94
113579--113707	46	2.8	46	80	3	145	46	10	21	20	1.81
117739--117995	55	4.7	55	87	3	367	34	12	20	32	1.91
118206--118808	68	9.0	68	87	3	812	31	14	23	30	1.95
118840--118960	46	2.7	46	84	6	165	45	10	25	18	1.81
119905--119999	48	2.0	47	97	2	181	40	27	12	20	1.88
121279--121327	22	2.3	22	89	3	73	61	14	14	10	1.57
124043--124134	46	2.0	46	97	2	177	33	26	15	25	1.95
127998--128022	11	2.3	11	100	0	50	52	32	8	8	1.60
128401--128530	66	2.0	66	96	0	242	34	7	19	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128768--128851	29	2.8	29	78	10	98	33	13	28	25	1.93
128844--128868	11	2.3	11	100	0	50	52	32	8	8	1.60
129998--130163	86	1.9	87	89	6	257	45	6	9	38	1.63
130823--130857	2	17.5	2	88	11	54	45	0	2	51	1.16
130823--130857	13	2.8	13	91	4	54	45	0	2	51	1.16
135812--135864	24	2.4	21	74	17	61	35	9	18	35	1.84
135818--135864	24	2.0	24	95	0	85	34	8	19	38	1.82
135820--135872	24	2.2	24	89	0	79	33	9	20	35	1.85
146299--146402	30	3.5	30	86	0	154	31	13	28	25	1.94
148359--148498	54	2.6	54	85	4	192	36	20	10	32	1.87
148549--148603	22	2.5	22	100	0	110	23	9	23	43	1.82
148577--148754	94	1.9	95	84	3	243	25	21	13	39	1.90
156673--156715	22	1.9	23	95	4	79	48	6	0	44	1.29
156276--156980	238	3.0	235	96	3	1289	45	10	6	38	1.64
168023--168095	33	2.1	34	82	5	85	30	8	16	45	1.76
168023--168099	34	2.3	34	84	4	93	29	9	15	45	1.77
168109--168160	16	3.1	17	78	10	63	38	13	5	42	1.68
170869--170921	24	2.3	24	87	6	74	62	15	13	9	1.54
171715--171815	43	2.3	43	96	1	184	28	1	40	28	1.67
171712--171785	23	3.3	23	62	17	57	28	1	40	29	1.65
174519--174551	16	2.1	16	100	0	66	33	18	6	42	1.75
179010--179051	22	1.9	22	85	9	59	40	19	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181890--181924	13	2.9	12	88	12	54	0	20	0	80	0.72
183474--183515	22	1.9	22	85	9	59	40	19	0	40	1.51
191747--192250	251	2.0	251	97	2	960	27	19	15	37	1.92
194090--194143	17	3.5	17	66	23	55	22	16	35	25	1.95
194088--194150	29	2.2	29	100	0	126	25	19	33	22	1.97
205589--205620	16	1.9	17	93	6	57	0	15	0	84	0.63
209847--209891	6	8.0	6	85	9	60	2	15	0	82	0.77
209843--209891	16	3.0	17	88	8	75	2	16	0	81	0.78
209843--209891	11	4.6	10	90	7	62	2	16	0	81	0.78
214395--214511	53	2.2	53	96	0	216	34	20	20	24	1.97
215223--215262	20	1.9	22	90	10	66	25	20	10	45	1.81
226708--226756	19	2.7	18	78	12	55	77	0	18	4	0.92
234625--234675	24	2.2	23	82	3	57	7	13	15	62	1.52
248971--249076	50	2.3	47	85	14	141	33	1	13	50	1.52
257682--257877	99	2.0	98	97	2	376	28	15	24	31	1.95
259958--260028	31	2.2	33	76	16	78	67	5	15	11	1.39
274055--274096	13	3.2	13	79	0	57	2	11	7	78	1.04
274850--274899	19	2.5	20	87	3	66	46	6	12	36	1.66
284634--284669	14	2.6	14	86	13	56	0	22	0	77	0.76
289113--289152	19	2.0	20	95	4	73	67	0	15	17	1.23
289568--289610	19	2.2	20	87	4	61	48	6	9	34	1.62
292834--292882	13	3.7	13	80	20	57	4	12	6	77	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293602--293644	19	2.2	20	87	4	61	48	4	11	34	1.60
296768--296805	12	3.1	12	82	17	51	73	7	10	7	1.24

Tables:   1

The End!