Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007813.1 Hibiscus syriacus cultivar Beakdansim tig00110144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170288

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19439--19491
24
2.3
24
83
6
65
7
16
15
60
1.57
20999--21042
18
2.4
18
100
0
88
18
13
36
31
1.90
22120--22161
11
3.7
12
87
3
52
14
11
0
73
1.09
22495--22534
19
2.1
19
90
9
64
75
15
10
0
1.05
27885--27952
24
2.8
25
80
10
70
77
11
5
4
1.08
30180--30222
18
2.4
18
100
0
86
51
34
9
4
1.55
31822--31907
43
2.0
43
100
0
172
46
13
9
30
1.75
33693--33731
12
3.5
11
86
13
53
69
0
12
17
1.19
34000--34031
14
2.3
14
100
0
64
40
31
21
6
1.78
38410--38452
11
3.8
12
87
9
56
67
0
16
16
1.24
43230--43279
8
5.9
8
82
13
64
2
4
8
86
0.78
43229--43280
27
2.0
26
85
7
70
1
5
7
84
0.84
43610--43648
12
3.5
11
86
13
53
69
0
12
17
1.19
47979--48085
50
2.1
50
81
6
119
20
20
22
36
1.95
48182--48224
23
1.9
22
90
4
68
13
11
4
69
1.33
53575--53617
19
2.2
20
87
4
61
48
6
9
34
1.62
58401--58440
19
2.0
20
90
4
64
20
15
0
65
1.28
62026--62191
89
1.9
90
92
1
280
36
12
5
45
1.65
67694--67805
35
3.2
35
85
1
143
29
33
3
33
1.75
67952--67990
15
2.5
15
83
4
51
17
20
0
61
1.34
78454--78501
11
4.4
11
89
5
62
0
4
10
85
0.73
85321--85356
5
7.6
5
90
9
58
83
0
16
0
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85321--85356
14
2.5
15
91
8
58
83
0
16
0
0.65
86578--86632
24
2.4
22
78
9
56
36
14
16
32
1.89
90468--90529
28
2.2
27
81
13
72
62
16
14
6
1.50
97908--97933
13
2.0
13
100
0
52
38
0
30
30
1.58
99797--99837
16
2.5
17
80
15
50
24
2
12
60
1.43
100224--100265
22
1.9
22
90
9
68
14
11
4
69
1.34
104892--104933
22
1.9
22
90
9
68
11
14
4
69
1.34
110887--110953
9
7.4
9
73
18
59
0
13
11
74
1.07
110894--110944
17
2.9
17
85
11
68
0
11
9
78
0.97
110906--110945
16
2.4
17
91
8
73
0
10
10
80
0.92
110887--110965
20
3.7
20
75
15
68
0
11
12
75
1.04
124962--124999
17
2.3
16
95
4
67
18
15
2
63
1.43
126032--126079
23
2.1
23
100
0
96
37
25
12
25
1.91
126642--127529
445
2.0
445
85
6
1204
40
11
22
25
1.87
131089--131125
9
4.0
9
96
3
65
0
13
0
86
0.57
131092--131124
15
2.2
15
89
10
50
0
12
0
87
0.53
131116--131167
23
2.3
22
87
6
77
9
13
13
63
1.52
146913--146968
25
2.2
25
96
0
103
14
26
19
39
1.90
155552--155594
6
7.2
6
84
10
61
79
0
20
0
0.74
155552--155594
11
3.6
11
85
14
59
79
0
20
0
0.74
155552--155594
19
2.4
19
88
7
63
79
0
20
0
0.74
156948--157018
24
3.0
24
76
0
88
36
15
21
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
159604--159660
11
4.9
11
74
18
53
29
36
1
31
1.68
165208--165264
11
4.9
11
74
18
53
29
36
1
31
1.68
166997--167039
14
2.9
15
79
10
52
76
2
16
4
1.05

Tables:   1

The End!