genome.fa.s7814.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007814.1 Hibiscus syriacus cultivar Beakdansim tig00110146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  367404

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578--619	6	6.7	6	84	10	57	80	0	19	0	0.70
580--624	15	2.7	16	86	13	56	80	0	20	0	0.72
13908--13967	30	2.0	31	83	3	77	26	10	6	56	1.57
20146--20175	13	2.4	13	94	5	53	26	30	0	43	1.55
25666--25847	91	2.0	91	89	0	274	29	22	27	20	1.99
29311--29340	8	3.6	8	91	8	51	86	0	13	0	0.57
29311--29371	24	2.5	24	78	0	68	78	1	13	6	1.01
33112--33141	8	3.6	8	91	8	51	86	0	13	0	0.57
33120--33165	24	1.9	24	86	0	65	78	2	13	6	1.04
36053--36111	25	2.4	24	83	8	73	10	13	15	61	1.57
38478--38533	27	2.1	26	86	3	76	55	0	28	16	1.41
39073--39109	19	1.9	19	94	0	65	43	5	13	37	1.67
40704--40741	19	2.0	20	89	5	60	15	18	0	65	1.27
40998--41045	13	3.7	12	79	17	51	75	2	18	4	1.07
45276--45313	19	2.0	20	89	5	60	15	18	0	65	1.27
49829--49866	19	2.0	20	89	5	60	15	18	0	65	1.27
59224--59308	11	7.2	11	72	22	66	31	36	3	28	1.74
59222--59325	36	2.9	36	94	1	174	30	37	3	27	1.75
64940--65024	11	7.2	11	72	22	66	32	35	3	28	1.74
64937--65041	36	2.9	36	92	1	167	31	36	4	27	1.78
69165--69221	11	4.9	11	74	18	53	31	1	36	29	1.68
74408--74437	12	2.4	13	94	5	53	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74805--74861	11	4.9	11	74	18	53	31	1	36	29	1.68
112513--112571	23	2.5	24	80	5	75	66	8	15	10	1.45
121670--121722	23	2.2	24	90	3	81	9	16	11	62	1.54
125308--125336	14	2.0	15	93	6	51	75	0	24	0	0.80
127928--128013	13	7.2	12	72	22	58	29	3	37	30	1.74
127910--128014	36	2.9	36	94	1	176	29	4	36	29	1.78
133632--133726	36	2.7	36	93	1	156	30	5	35	28	1.79
138744--138774	5	6.2	5	92	0	53	0	19	3	77	0.90
158273--158323	18	2.8	17	82	11	57	76	5	13	3	1.11
163545--163622	39	2.0	39	92	2	131	34	23	12	29	1.92
163739--163788	24	2.1	24	85	3	66	62	16	12	10	1.55
168609--168635	11	2.5	11	100	0	54	25	11	0	62	1.28
168982--169009	12	2.3	12	100	0	56	78	7	14	0	0.95
168965--169026	19	3.2	19	78	14	65	80	11	8	0	0.90
173330--173371	22	1.9	22	90	9	68	14	11	4	69	1.34
186952--187055	33	3.1	33	82	9	95	30	36	1	30	1.69
187462--187509	15	3.1	15	78	6	51	75	6	16	2	1.11
190903--191006	33	3.1	33	82	9	95	30	36	1	30	1.69
192628--192684	11	4.9	11	74	18	53	29	36	1	31	1.68
193102--193149	15	3.1	15	78	6	51	75	6	16	2	1.11
198238--198294	11	4.9	11	74	18	53	29	36	1	31	1.68
208302--208343	11	3.8	11	78	9	50	2	2	11	83	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208669--208714	11	4.0	12	77	8	51	71	4	10	13	1.27
208669--208711	23	1.9	22	90	4	68	69	4	11	13	1.33
213784--213826	20	2.2	20	87	4	61	34	9	6	48	1.62
214162--214189	14	2.0	14	100	0	56	21	42	0	35	1.53
224529--224561	16	2.1	16	100	0	66	33	18	6	42	1.75
228129--228161	16	2.1	16	94	0	57	33	15	9	42	1.78
231750--231782	16	2.1	16	94	0	57	33	15	9	42	1.78
241086--241118	11	3.0	11	100	0	66	54	18	18	9	1.69
242919--242960	22	1.9	22	90	9	68	61	16	14	7	1.53
242993--243025	13	2.5	13	100	0	66	36	33	0	30	1.58
249899--249949	25	2.0	25	100	0	102	31	17	7	43	1.78
253289--253322	9	3.7	9	92	7	59	0	0	11	88	0.52
253289--253324	10	3.7	10	85	7	56	0	0	13	86	0.58
253850--253897	23	2.2	21	85	10	62	0	8	6	85	0.74
254226--254268	11	3.9	10	82	17	50	72	0	13	13	1.13
263149--263173	12	2.1	12	100	0	50	0	16	0	84	0.63
266197--266265	33	2.1	33	83	5	86	30	36	1	31	1.67
268057--268113	11	4.9	11	74	18	53	29	36	1	31	1.68
270698--270801	33	3.1	33	82	9	95	30	36	1	30	1.69
273832--273870	15	2.7	15	96	4	71	17	20	0	61	1.34
278796--278845	22	2.2	23	89	3	75	24	4	36	36	1.74
281422--281478	11	4.9	11	74	18	53	31	1	36	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283547--283593	23	2.0	23	100	0	94	44	8	34	12	1.73
294341--294523	91	2.0	91	90	0	285	29	21	27	20	1.98
301753--301792	19	2.0	20	90	4	64	20	15	0	65	1.28
302058--302116	25	2.4	24	81	15	68	74	3	16	5	1.13
302547--302588	22	2.0	21	85	4	57	21	9	30	38	1.85
306181--306249	13	5.5	13	72	10	54	27	40	2	28	1.71
306684--306723	19	2.0	20	86	13	57	62	2	12	22	1.42
311222--311326	35	3.0	35	82	1	111	32	2	34	30	1.73
311233--311328	35	2.7	35	83	1	120	33	3	35	28	1.73
311669--311719	19	2.6	20	87	3	68	45	5	15	33	1.71
314642--314674	13	2.5	13	100	0	66	60	0	21	18	1.36
314861--314897	5	7.8	5	82	11	51	2	16	0	81	0.81
314863--314897	18	1.9	18	94	0	61	2	17	0	80	0.84
314924--314963	6	6.7	6	86	8	55	0	12	2	85	0.71
314922--314960	13	3.1	13	85	7	53	0	15	2	82	0.79
315342--315443	35	2.9	35	80	1	114	32	5	35	26	1.81
331369--331454	13	7.2	12	72	22	58	29	3	37	30	1.74
331351--331455	36	2.9	36	94	1	176	29	4	36	29	1.78
334252--334315	23	2.8	23	88	6	87	64	18	10	6	1.46
338956--339024	33	2.1	33	83	5	86	31	1	36	30	1.67
343428--343496	33	2.1	33	83	5	86	31	1	36	30	1.67
345121--345174	19	2.7	19	88	5	72	42	9	12	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349682--349752	36	2.0	36	100	0	142	29	36	5	28	1.80
349720--349779	28	2.1	29	90	3	95	30	38	3	28	1.73
360659--360708	20	2.5	20	90	3	75	34	16	6	44	1.72
361852--361936	11	7.2	11	72	22	66	31	36	3	28	1.74
361849--361953	36	2.9	36	94	1	176	29	36	4	29	1.78
364202--364244	22	2.0	22	90	9	70	13	11	4	69	1.33

Tables:   1

The End!