genome.fa.s7815.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007815.1 Hibiscus syriacus cultivar Beakdansim tig00110147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  279268

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4020--4076	11	4.9	11	74	18	53	31	1	36	29	1.68
16706--16730	13	1.9	13	100	0	50	72	12	16	0	1.13
22626--22673	19	2.6	19	93	3	80	31	22	8	37	1.84
23115--23159	24	2.0	22	82	8	54	33	15	15	35	1.89
25347--25389	23	1.9	21	81	13	50	32	18	13	34	1.90
30229--30263	17	2.0	18	88	5	54	31	11	11	45	1.76
63496--63520	13	1.9	13	100	0	50	80	4	16	0	0.87
65364--65395	16	2.0	16	93	0	55	31	18	3	46	1.65
69727--69816	35	2.5	35	83	1	117	31	5	36	26	1.79
71254--71282	13	2.1	14	93	6	51	24	34	3	37	1.72
75249--75580	165	2.0	165	89	2	515	22	15	22	40	1.91
76212--76275	26	2.5	26	83	14	80	7	17	4	70	1.29
76228--76284	17	3.5	15	79	13	60	3	17	5	73	1.16
83061--83186	58	2.2	58	92	1	207	26	17	29	26	1.97
86934--87000	25	2.6	26	92	2	109	19	32	19	28	1.96
87855--87908	24	2.3	23	81	9	65	61	14	16	7	1.55
90892--90955	25	2.5	26	89	2	94	18	34	20	26	1.96
92389--92440	19	2.6	21	90	6	81	46	5	13	34	1.67
96516--96567	19	2.6	21	90	6	81	46	5	13	34	1.67
97864--97932	33	2.1	33	83	5	86	31	1	36	30	1.67
102327--102395	33	2.1	33	83	5	86	31	1	36	30	1.67
104786--104966	91	2.0	90	80	8	206	23	27	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111944--111972	15	2.0	15	93	6	51	0	20	3	75	0.94
115121--115225	35	2.9	36	84	7	151	26	36	3	33	1.75
116808--116865	13	4.7	13	75	12	59	29	41	0	29	1.56
116807--116960	35	4.3	35	85	5	182	27	35	3	33	1.73
116807--116956	73	2.0	74	84	1	194	28	35	3	33	1.74
117229--117333	52	2.0	52	92	0	174	31	26	15	26	1.96
117461--117520	14	4.6	13	75	21	63	66	0	18	15	1.25
117451--117525	19	3.9	19	94	1	132	64	0	18	17	1.30
119325--119480	69	2.3	69	95	0	276	23	20	17	37	1.94
126525--126572	12	4.1	12	82	10	55	75	8	14	2	1.13
126535--126566	13	2.5	13	94	0	55	81	3	12	3	0.93
133037--133066	13	2.4	13	94	5	53	26	30	0	43	1.55
139309--139362	22	2.5	22	77	17	60	79	1	12	5	0.98
143958--144008	20	2.6	20	90	3	77	35	15	5	43	1.71
145374--145426	21	2.5	21	90	3	79	69	5	7	16	1.31
149332--149361	13	2.4	13	94	5	53	43	0	30	26	1.55
151374--151400	13	2.1	13	100	0	54	29	18	22	29	1.97
151709--151746	15	2.4	16	82	8	51	81	5	13	0	0.85
158226--158294	10	6.5	10	76	12	66	0	5	11	82	0.83
158236--158291	15	3.8	15	81	11	62	0	7	8	83	0.80
161335--161403	33	2.1	33	83	5	86	31	1	36	30	1.67
161374--161486	36	3.2	36	88	1	156	27	4	35	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165754--165822	33	2.1	33	83	5	86	31	1	36	30	1.67
165793--165905	36	3.2	36	87	1	156	26	3	35	34	1.74
169467--169496	13	2.4	13	94	5	53	26	30	0	43	1.55
171833--171890	11	5.1	11	84	13	73	84	1	12	1	0.78
171833--171886	25	2.2	25	82	0	63	85	1	11	1	0.76
171843--171889	25	1.9	24	91	4	76	82	2	12	2	0.84
175284--175313	13	2.4	13	94	5	53	26	30	0	43	1.55
180692--180721	15	2.1	15	93	6	53	0	20	3	76	0.92
181684--181727	23	1.9	23	100	0	88	27	18	34	20	1.96
181815--181858	18	2.4	18	100	0	88	18	13	36	31	1.90
188054--188138	36	2.4	36	97	0	161	29	36	4	29	1.78
188057--188148	11	7.8	11	73	21	71	30	36	3	29	1.73
188675--188767	11	7.9	11	71	18	55	30	3	36	30	1.73
188676--188745	11	5.8	12	75	20	58	30	2	37	30	1.72
188686--188770	36	2.4	36	97	0	161	29	4	36	29	1.78
190759--190844	13	7.2	12	72	22	58	29	3	37	30	1.74
190741--190845	36	2.9	36	94	1	176	27	4	37	30	1.77
195728--195784	24	2.4	24	77	8	64	59	0	28	12	1.33
196223--196260	16	2.4	16	82	4	51	55	0	26	18	1.43
196407--196458	22	2.3	23	90	3	79	26	3	36	32	1.75
198063--198095	9	3.8	9	88	4	50	0	18	3	78	0.87
198062--198095	13	2.6	14	90	9	54	0	20	2	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211526--211568	23	1.9	21	81	13	50	32	18	13	34	1.90
214312--214371	30	2.0	31	83	3	77	28	10	8	53	1.63
216342--216384	23	1.9	21	81	13	50	34	13	18	32	1.90
222252--222298	16	2.9	16	100	0	94	48	6	19	25	1.72
224367--224402	14	2.6	14	86	0	54	33	2	30	33	1.72
233305--233390	13	7.2	12	72	22	58	29	3	37	30	1.74
233287--233391	36	2.9	36	94	1	176	29	4	35	30	1.78
236518--236550	16	2.1	16	100	0	66	42	6	18	33	1.75
244138--244181	19	2.3	19	96	0	79	65	0	22	11	1.24
245078--245118	17	2.4	17	84	15	50	36	7	7	48	1.59
247364--247396	16	2.1	16	100	0	66	42	6	18	33	1.75
250101--250529	215	2.0	211	98	1	822	33	17	17	32	1.93
250956--250988	16	2.1	16	100	0	66	42	6	18	33	1.75
254463--254495	16	2.1	16	94	0	57	42	3	18	36	1.66
255567--255635	33	2.1	33	83	5	86	31	1	36	30	1.67
255621--255717	13	8.0	12	72	22	62	29	3	36	30	1.73
255606--255718	36	3.2	36	89	1	165	28	3	35	32	1.74
257013--257062	23	2.2	22	86	10	66	66	0	8	26	1.19
262990--263075	13	7.2	12	72	22	58	29	3	37	30	1.74
262972--263076	36	2.9	36	94	1	176	29	4	36	29	1.78
272156--272206	24	2.1	24	85	0	66	37	11	17	33	1.86
278691--278778	11	7.8	11	70	22	58	32	37	1	28	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278689--278737	12	4.2	12	77	17	50	30	38	2	28	1.68

Tables:   1

The End!