Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3994936
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 14
Found at i:2326589 original size:47 final size:46
Alignment explanation
Indices: 2326499--2326589 Score: 112
Period size: 47 Copynumber: 2.0 Consensus size: 46
2326489 CCTCTTAAAT
* * * *
2326499 TTTTAACTTTTTCTTTTCTCTTTCTTTATTAATTTTTTCTCTTTCA
1 TTTTAACTTTTACTTTTCTCTTTCTTCATTAATCTTCTCTCTTTCA
*
2326545 TTTTAACTTTTACTTTTTCTCTTTCCTTCATTCATCTTCT-TCTTT
1 TTTTAACTTTTAC-TTTTCTCTTT-CTTCATTAATCTTCTCTCTTT
2326590 TGTTATTCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
46 12 0.32
47 15 0.39
48 11 0.29
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (46 bp):
TTTTAACTTTTACTTTTCTCTTTCTTCATTAATCTTCTCTCTTTCA
Found at i:2329875 original size:24 final size:24
Alignment explanation
Indices: 2329848--2329897 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
2329838 TGGTGATTGA
*
2329848 TTTAATGGT-TGTTTGAACTTTATT
1 TTTAATGGTATATTT-AACTTTATT
*
2329872 TTTAATGGTATATTTAAGTTTATT
1 TTTAATGGTATATTTAACTTTATT
2329896 TT
1 TT
2329898 GGTTGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (24 bp):
TTTAATGGTATATTTAACTTTATT
Found at i:2331677 original size:21 final size:21
Alignment explanation
Indices: 2331638--2331678 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2331628 TTAACTTTTT
* **
2331638 GGTCAATGTCAAAGTTAAAGA
1 GGTCAAAGTCAAAACTAAAGA
2331659 GGTCAAAGTCAAAACTAAAG
1 GGTCAAAGTCAAAACTAAAG
2331679 TCAACGGGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.20
Consensus pattern (21 bp):
GGTCAAAGTCAAAACTAAAGA
Found at i:2335853 original size:46 final size:46
Alignment explanation
Indices: 2335786--2335877 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
2335776 TTACTTCTTT
2335786 TGAGTACTTGGGGCATCTGTGCCCAGTTAGCAAATGAAGTGCCTTG
1 TGAGTACTTGGGGCATCTGTGCCCAGTTAGCAAATGAAGTGCCTTG
* * *
2335832 TGAGTTCTTGGGGCATTTGTGCCCAGTTAGTAAATGAAGTGCCTTG
1 TGAGTACTTGGGGCATCTGTGCCCAGTTAGCAAATGAAGTGCCTTG
2335878 GCACTTGCTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (46 bp):
TGAGTACTTGGGGCATCTGTGCCCAGTTAGCAAATGAAGTGCCTTG
Found at i:2338373 original size:32 final size:31
Alignment explanation
Indices: 2338337--2338459 Score: 138
Period size: 32 Copynumber: 3.8 Consensus size: 31
2338327 TGTGCATCAT
*
2338337 TTGAATCTGATATCCATTATCTAAATGTAATA
1 TTGAATCT-ATATGCATTATCTAAATGTAATA
* *
2338369 TTGAATCTTCTATGCATTATCTAAATGCAATA
1 TTGAATC-TATATGCATTATCTAAATGTAATA
* * *
2338401 TTGAATCTATTGTGCACTATCTAAATGTAATT
1 TTGAATCTA-TATGCATTATCTAAATGTAATA
* *
2338433 TTGAATCTACTATGCACTATCTGAATG
1 TTGAATCTA-TATGCATTATCTAAATG
2338460 CAATGTTAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
31 1 0.01
32 76 0.97
33 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (31 bp):
TTGAATCTATATGCATTATCTAAATGTAATA
Found at i:2338480 original size:32 final size:32
Alignment explanation
Indices: 2338380--2338480 Score: 85
Period size: 32 Copynumber: 3.2 Consensus size: 32
2338370 TGAATCTTCT
* * * * **
2338380 ATGCATTATCTAAATGCAATATTGAATCTATT
1 ATGCACTATCTAAATGCAATGTTAAAACTACC
* * * * * *
2338412 GTGCACTATCTAAATGTAATTTTGAATCTACT
1 ATGCACTATCTAAATGCAATGTTAAAACTACC
*
2338444 ATGCACTATCTGAATGCAATGTTAAAACTACC
1 ATGCACTATCTAAATGCAATGTTAAAACTACC
2338476 ATGCA
1 ATGCA
2338481 ATAGACAAGT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (32 bp):
ATGCACTATCTAAATGCAATGTTAAAACTACC
Found at i:2342479 original size:32 final size:32
Alignment explanation
Indices: 2342443--2342526 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
2342433 TATTAACCCG
2342443 CTATGCATTATCTAAATGCAATACTAG-CTCTA
1 CTATGCATTATCTAAATGCAATA-TAGACTCTA
* * * *
2342475 CTATGTATTATTTAAATGCAATATTGATTCTA
1 CTATGCATTATCTAAATGCAATATAGACTCTA
*
2342507 CTATGCATTATCTTAATGCA
1 CTATGCATTATCTAAATGCA
2342527 GCACGGACTC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 2 0.05
32 42 0.95
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (32 bp):
CTATGCATTATCTAAATGCAATATAGACTCTA
Found at i:2348528 original size:16 final size:16
Alignment explanation
Indices: 2348507--2348538 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2348497 CCTAACTGTT
2348507 ACTATTACTATTTCTA
1 ACTATTACTATTTCTA
*
2348523 ACTATTATTATTTCTA
1 ACTATTACTATTTCTA
2348539 GATGTAGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (16 bp):
ACTATTACTATTTCTA
Found at i:2356243 original size:34 final size:33
Alignment explanation
Indices: 2356203--2356290 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 33
2356193 AATGGTAATA
*
2356203 AACAAAATTATCAAAATAAA-TTAAGAAAAAGTCC
1 AACAAAATTAACAAAATAAATTTAAG-AAAA-TCC
*
2356237 AACAAAA-TAAGCAAAATAAATTTTTAGAAAATCC
1 AACAAAATTAA-CAAAATAAA-TTTAAGAAAATCC
*
2356271 AACCAAATTAACAAAATAAA
1 AACAAAATTAACAAAATAAA
2356291 GACCCTGGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
33 2 0.04
34 34 0.72
35 7 0.15
36 4 0.09
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.20
Consensus pattern (33 bp):
AACAAAATTAACAAAATAAATTTAAGAAAATCC
Found at i:2358310 original size:16 final size:16
Alignment explanation
Indices: 2358286--2358333 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
2358276 TATCTACAAA
*
2358286 AAAAT-TTAATTAAAT
1 AAAATATTAAATAAAT
*
2358301 AAAATATTAAAAAAAT
1 AAAATATTAAATAAAT
*
2358317 TAAATAATTAAATAAAT
1 AAAAT-ATTAAATAAAT
2358334 TACTAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 5 0.19
16 12 0.44
17 10 0.37
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATATTAAATAAAT
Found at i:2361390 original size:13 final size:13
Alignment explanation
Indices: 2361369--2361398 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2361359 GGTAGTTTAG
*
2361369 GTTTGCTTTAAAT
1 GTTTACTTTAAAT
2361382 GTTTACTTTAAAT
1 GTTTACTTTAAAT
2361395 GTTT
1 GTTT
2361399 GCTAATCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.13, T:0.57
Consensus pattern (13 bp):
GTTTACTTTAAAT
Found at i:2365394 original size:54 final size:55
Alignment explanation
Indices: 2365333--2365470 Score: 161
Period size: 55 Copynumber: 2.5 Consensus size: 55
2365323 TACTATACGA
* *
2365333 AAATTCATATACTTAGTATGAATTTCTTAG-TTCGCACACATAGTACCCATACAG
1 AAATTCATAAACTTAGTATGAATTTCTTAGTTTCACACACATAGTACCCATACAG
* * * * ***
2365387 AAATTCATACACTTAGTATGAACTTCTTAGTTTTACACCCATAGTGTTCATACAG
1 AAATTCATAAACTTAGTATGAATTTCTTAGTTTCACACACATAGTACCCATACAG
** *
2365442 AAATTCATAAACAAATTATGAATTTCTTA
1 AAATTCATAAACTTAGTATGAATTTCTTA
2365471 ACTTTTTGCA
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
54 28 0.40
55 42 0.60
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (55 bp):
AAATTCATAAACTTAGTATGAATTTCTTAGTTTCACACACATAGTACCCATACAG
Found at i:2365449 original size:55 final size:54
Alignment explanation
Indices: 2365333--2365450 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
2365323 TACTATACGA
* * *
2365333 AAATTCATATACTTAGTATGAATTTCTTAGTTCGCACACATAGTACCCATACAG
1 AAATTCATACACTTAGTATGAACTTCTTAGTTCACACACATAGTACCCATACAG
* * ***
2365387 AAATTCATACACTTAGTATGAACTTCTTAGTTTTACACCCATAGTGTTCATACAG
1 AAATTCATACACTTAGTATGAACTTCTTAG-TTCACACACATAGTACCCATACAG
2365442 AAATTCATA
1 AAATTCATA
2365451 AACAAATTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
54 28 0.51
55 27 0.49
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (54 bp):
AAATTCATACACTTAGTATGAACTTCTTAGTTCACACACATAGTACCCATACAG
Found at i:2365505 original size:57 final size:57
Alignment explanation
Indices: 2365435--2365719 Score: 434
Period size: 57 Copynumber: 5.0 Consensus size: 57
2365425 CCATAGTGTT
* *
2365435 CATACAGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACATGAAATGCC
1 CATACTGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAATGCC
*
2365492 CATACTGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAGTGCC
1 CATACTGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAATGCC
*
2365549 CATAC-GAAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACATGAAATGCC
1 CATACTG-AAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAATGCC
2365606 CATACAT-AAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACAC-AAAGTGGCC
1 CATAC-TGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAA-T-GCC
* * * *
2365664 C-TACGGAAATTCATAAACCAATTATGAATTTATTAACTTTTTGCACACGAAGTGCC
1 CATACTGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAATGCC
2365720 TGTAATACCC
Statistics
Matches: 211, Mismatches: 10, Indels: 15
0.89 0.04 0.06
Matches are distributed among these distances:
56 7 0.03
57 198 0.94
58 6 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (57 bp):
CATACTGAAATTCATAAACAAATTATGAATTTCTTAACTTTTTGCACACGAAATGCC
Found at i:2368094 original size:20 final size:20
Alignment explanation
Indices: 2368057--2368099 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2368047 TATATTGGGC
* *
2368057 TATTTTCTATTGTTTATGGT
1 TATTTTCTATGGTATATGGT
*
2368077 TATTTTCTATGGTATATGTT
1 TATTTTCTATGGTATATGGT
2368097 TAT
1 TAT
2368100 GGAATAATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.05, G:0.14, T:0.63
Consensus pattern (20 bp):
TATTTTCTATGGTATATGGT
Found at i:2375020 original size:20 final size:20
Alignment explanation
Indices: 2374983--2375025 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
2374973 TATATTGGGC
* *
2374983 TATTGTCTATTGTTTATGGT
1 TATTGTCTATGGTATATGGT
* *
2375003 TATTTTCTATGGTATATGTT
1 TATTGTCTATGGTATATGGT
2375023 TAT
1 TAT
2375026 GGAATAATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.16, T:0.60
Consensus pattern (20 bp):
TATTGTCTATGGTATATGGT
Found at i:2379692 original size:55 final size:55
Alignment explanation
Indices: 2379627--2380265 Score: 392
Period size: 55 Copynumber: 11.7 Consensus size: 55
2379617 GAGCAGACTT
* * *
2379627 ATTTTTTGAATATTTTTCAAGTCCTACACTCCCTGAAAGAAA-AGGGAGCGA-ACCC
1 ATTTTCTGAAGATTTTTCAAGTCCTATACTCCCTGAAA-AAAGAGGGAGC-ACACCC
*
2379682 ATTTTCTGAATATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
1 ATTTTCTGAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* *
2379737 ATTTTCTAAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCA-ACAC
1 ATTTTCTGAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* * *
2379791 ATTTTCTGAAGATTGTTT-GAGTCCTATACTCCCTGAAAAAAGAAGGAGCATACCC
1 ATTTTCTGAAGATT-TTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* * * *** *
2379846 ATTTT-TCAAAGATATTTCGAGTCCTATACTCCCT-AAAAGAAGAGGGAGCGGTCAC
1 ATTTTCT-GAAGATTTTTCAAGTCCTATACTCCCTGAAAA-AAGAGGGAGCACACCC
* * * * * * *
2379901 GTTTGTC-GAAGATTGTTCGAGTCATATACTCCTTGGAAGAAAA-A-GGAGCAGATCC
1 ATTT-TCTGAAGATTTTTCAAGTCCTATACTCCCT-GAA-AAAAGAGGGAGCACACCC
* * * *
2379956 ATTTTCTGAAGATTGTTT---GTCCTTTACTCCCTGAAAGAAGAGGGAGCAGACAC
1 ATTTTCTGAAGATT-TTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* * * * * * * ** ** *
2380009 GTTTATC-GAAGATTGTTCGAGTCCTATGCTCCTTGGAAGAAGAAAGAGCGGATCC
1 ATTT-TCTGAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* * * * * * * *
2380064 GTTTT-TCAAAAATTGTTCGAGTCCTATACTCCCT-AAAAGAAGAGGGTGCAGACAC
1 ATTTTCT-GAAGATTTTTCAAGTCCTATACTCCCTGAAAA-AAGAGGGAGCACACCC
* * * * * * * * *
2380119 ATTTT-TCGAAGATTGTTCGAGTCCTATATTTCTTGAAAGAAGAAGGAGCAGACTC
1 ATTTTCT-GAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* * * * * * * * * ***
2380174 GTTTTCTAAACATTGTCCGAGTCCTATACTCCTTGAAAGAAGAAGGAGTGGACCC
1 ATTTTCTGAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
* * * * *
2380229 ATTTTCTAAAGATTGTTCGAGTCATATACTCCTTGAA
1 ATTTTCTGAAGATTTTTCAAGTCCTATACTCCCTGAA
2380266 GGAAGGAGTG
Statistics
Matches: 479, Mismatches: 80, Indels: 50
0.79 0.13 0.08
Matches are distributed among these distances:
51 3 0.01
52 6 0.01
53 30 0.06
54 65 0.14
55 361 0.75
56 8 0.02
57 4 0.01
58 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (55 bp):
ATTTTCTGAAGATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCACACCC
Found at i:2379831 original size:110 final size:109
Alignment explanation
Indices: 2379638--2380265 Score: 587
Period size: 110 Copynumber: 5.7 Consensus size: 109
2379628 TTTTTTGAAT
* * * * * *
2379638 ATTTTTCAAGTCCTACACTCCCTGAAAGAAA-AGGGAGCGAACCCATTTTCTGAATATTTTTCAA
1 ATTTTTCGAGTCCTATACTCCCTGAAA-AAAGAGGGAGC-AACACATTTTCTGAAGATTGTTCGA
* * *
2379702 GTCCTATACTCCCTGAAAAAAGAGGGAGCACACCCATTTTCTAAAG
64 GTCCTATACTCCTTGAAAAAAGAAGGAGCAGACCCATTTTCTAAAG
* *
2379748 ATTTTTCAAGTCCTATACTCCCTGAAAAAAGAGGGAGCAACACATTTTCTGAAGATTGTTTGAGT
1 ATTTTTCGAGTCCTATACTCCCTGAAAAAAGAGGGAGCAACACATTTTCTGAAGATTGTTCGAGT
* *
2379813 CCTATACTCCCTGAAAAAAGAAGGAGCATACCCATTTT-TCAAAG
66 CCTATACTCCTTGAAAAAAGAAGGAGCAGACCCATTTTCT-AAAG
* ** *
2379857 ATATTTCGAGTCCTATACTCCCT-AAAAGAAGAGGGAGCGGTCACGTTTGTC-GAAGATTGTTCG
1 ATTTTTCGAGTCCTATACTCCCTGAAAA-AAGAGGGAGC-AACACATTT-TCTGAAGATTGTTCG
* * * *
2379920 AGTCATATACTCCTTGGAAGAAA-AAGGAGCAGATCCATTTTCTGAAG
63 AGTCCTATACTCCTT-GAAAAAAGAAGGAGCAGACCCATTTTCTAAAG
* * *
2379967 ATTGTTT---GTCCTTTACTCCCTGAAAGAAGAGGGAGCAGACACGTTTATC-GAAGATTGTTCG
1 ATT-TTTCGAGTCCTATACTCCCTGAAAAAAGAGGGAGCA-ACACATTT-TCTGAAGATTGTTCG
* * * * * * * *
2380028 AGTCCTATGCTCCTTGGAAGAAGAAAGAGCGGATCCGTTTT-TCAAAA
63 AGTCCTATACTCCTTGAAAAAAGAAGGAGCAGACCCATTTTCT-AAAG
* *
2380075 ATTGTTCGAGTCCTATACTCCCT-AAAAGAAGAGGGTGCAGACACATTTT-TCGAAGATTGTTCG
1 ATTTTTCGAGTCCTATACTCCCTGAAAA-AAGAGGGAGCA-ACACATTTTCT-GAAGATTGTTCG
* * * * * *
2380138 AGTCCTATATTTCTTGAAAGAAGAAGGAGCAGACTCGTTTTCTAAAC
63 AGTCCTATACTCCTTGAAAAAAGAAGGAGCAGACCCATTTTCTAAAG
* * * * * ** * *
2380185 ATTGTCCGAGTCCTATACTCCTTGAAAGAAGAAGGAGTGGACCCATTTTCTAAAGATTGTTCGAG
1 ATTTTTCGAGTCCTATACTCCCTGAAAAAAGAGGGAG-CAACACATTTTCTGAAGATTGTTCGAG
*
2380250 TCATATACTCCTTGAA
65 TCCTATACTCCTTGAA
2380266 GGAAGGAGTG
Statistics
Matches: 434, Mismatches: 62, Indels: 44
0.80 0.11 0.08
Matches are distributed among these distances:
107 7 0.02
108 82 0.19
109 103 0.24
110 225 0.52
111 17 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (109 bp):
ATTTTTCGAGTCCTATACTCCCTGAAAAAAGAGGGAGCAACACATTTTCTGAAGATTGTTCGAGT
CCTATACTCCTTGAAAAAAGAAGGAGCAGACCCATTTTCTAAAG
Found at i:2380089 original size:218 final size:216
Alignment explanation
Indices: 2379641--2380265 Score: 659
Period size: 218 Copynumber: 2.9 Consensus size: 216
2379631 TTTGAATATT
* * * * * * * * *
2379641 TTTCAAGTCCTACACTCCCTGAAAGAAAAGGGAGCGAACCCATTTTCTGAATATTTTTCAAGTCC
1 TTTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGCGGACACATTTTC-GAAGATTGTTCGAGTCC
* *
2379706 TATACTCCCT-GAA-AAAAGAGGGAGCACACCCATTTTCTAAAGATT-TTTCAAGTCCTATACTC
65 TATACTCCTTGGAAGAAAA-A-GGAGCAGA-CCATTTTCTAAAGATTGTTT---GTCCTATACTC
* * *
2379768 CCTGAAAAAAGAGGGAGCA-ACACATTTTCTGAAGATTGTTTGAGTCCTATACTCCCTGAAAAAA
124 CCTGAAAGAAGAGGGAGCAGACACATTTTCTGAAGATTGTTCGAGTCCTATACTCCTTGAAAAAA
* * *
2379832 GAAGGAGCATACCCATTTTTCAAAGATA
189 GAAAGAGCAGACCCATTTTTCAAAAATA
* * *
2379860 TTTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGCGGTCACGTTTGTCGAAGATTGTTCGAGTCA
1 TTTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGCGGACACATTT-TCGAAGATTGTTCGAGTCC
* *
2379925 TATACTCCTTGGAAGAAAAAGGAGCAGATCCATTTTCTGAAGATTGTTTGTCCTTTACTCCCTGA
65 TATACTCCTTGGAAGAAAAAGGAGCAGA-CCATTTTCTAAAGATTGTTTGTCCTATACTCCCTGA
* * * *
2379990 AAGAAGAGGGAGCAGACACGTTTATC-GAAGATTGTTCGAGTCCTATGCTCCTTGGAAGAAGAAA
129 AAGAAGAGGGAGCAGACACATTT-TCTGAAGATTGTTCGAGTCCTATACTCCTTGAAAAAAGAAA
* * *
2380054 GAGCGGATCCGTTTTTCAAAAAT-
193 GAGCAGACCCATTTTTCAAAAATA
* *
2380077 TGTTCGAGTCCTATACTCCCTAAAAGAAGAGGGTGCAGACACATTTTTCGAAGATTGTTCGAGTC
1 T-TTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGCGGACACA-TTTTCGAAGATTGTTCGAGTC
* * * * * * ** *
2380142 CTATATTTCTTGAAAGAAGAAGGAGCAGACTCGTTTTCTAAACATTGTCCGAGTCCTATACTCCT
64 CTATACTCCTTGGAAGAAAAAGGAGCAGAC-CATTTTCTAAAGATTGT--TTGTCCTATACTCCC
* ** * * *
2380207 TGAAAGAAGAAGGAGTGGACCCATTTTCTAAAGATTGTTCGAGTCATATACTCCTTGAA
126 TGAAAGAAGAGGGAGCAGACACATTTTCTGAAGATTGTTCGAGTCCTATACTCCTTGAA
2380266 GGAAGGAGTG
Statistics
Matches: 339, Mismatches: 55, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
217 30 0.09
218 150 0.44
219 88 0.26
220 67 0.20
221 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (216 bp):
TTTCGAGTCCTATACTCCCTAAAAGAAGAGGGAGCGGACACATTTTCGAAGATTGTTCGAGTCCT
ATACTCCTTGGAAGAAAAAGGAGCAGACCATTTTCTAAAGATTGTTTGTCCTATACTCCCTGAAA
GAAGAGGGAGCAGACACATTTTCTGAAGATTGTTCGAGTCCTATACTCCTTGAAAAAAGAAAGAG
CAGACCCATTTTTCAAAAATA
Found at i:2384897 original size:30 final size:29
Alignment explanation
Indices: 2384795--2384987 Score: 127
Period size: 30 Copynumber: 6.5 Consensus size: 29
2384785 TTATTAAAAC
* *
2384795 AAAGGACTAAATAGCAAAAACAACAATTT
1 AAAGGACTAAATAGCAAAAACAAAAACTT
* * * *
2384824 ACATGACTAAAATAACAAAAAAAAAAACTT
1 AAAGGACT-AAATAGCAAAAACAAAAACTT
* *
2384854 AAGGGACGTAAATAGCACAAACAAAAACTT
1 AAAGGAC-TAAATAGCAAAAACAAAAACTT
* * *
2384884 AAAGTACTAAAATAGAAAAAAC-ATAACTTT
1 AAAGGACT-AAATAGCAAAAACAAAAAC-TT
** * ** *
2384914 AAAGGGTTGAAATAGAAAAAAACTGAAACTC
1 AAAGGACT-AAATAG-CAAAAACAAAAACTT
* * * * *
2384945 AGAGGATTAAATAGTAAAAATAGAAACTT
1 AAAGGACTAAATAGCAAAAACAAAAACTT
2384974 AAAGGACTAAATAG
1 AAAGGACTAAATAG
2384988 AAATTCCAAA
Statistics
Matches: 126, Mismatches: 32, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
29 34 0.27
30 74 0.59
31 15 0.12
32 3 0.02
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (29 bp):
AAAGGACTAAATAGCAAAAACAAAAACTT
Found at i:2386331 original size:15 final size:14
Alignment explanation
Indices: 2386309--2386350 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
2386299 ATGTAATATG
2386309 TAAATTAATAATAA
1 TAAATTAATAATAA
2386323 TAAACTTAATAATAAA
1 TAAA-TTAATAAT-AA
*
2386339 TATATT-ATAATA
1 TAAATTAATAATA
2386351 GTATTTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 10 0.40
16 5 0.20
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAATTAATAATAA
Found at i:2386759 original size:133 final size:130
Alignment explanation
Indices: 2386548--2386808 Score: 343
Period size: 133 Copynumber: 2.0 Consensus size: 130
2386538 GTCATCTAAA
**
2386548 GGTGACACGACTCCTACGTGATGAGGAGGTTTGGTCGGTGGATGACACGACTCGTACGTGATGAA
1 GGTGACACGACTCCTACGTGATGAGGAGGACTGGTCGGTGGATGACACGACTCGTACGTGATGAA
* *
2386613 GAGTTCTGGCCATCTTTAGGAAGGTGATAACACGGTTCCTATGTGATGAGGACGGCTGGTTATCT
66 GAGTGCTGACCATCTTTAGG-A--TGATAACACGGTTCCTATGTGATGAGGACGGCTGGTTATCT
2386678 AGG
128 AGG
* * *
2386681 GGTGACACGGCTCCTACGTGATGAGGAGGACTGGTCGAG-GGATGACAC-AGTTCGTAGGTGAT-
1 GGTGACACGACTCCTACGTGATGAGGAGGACTGGTCG-GTGGATGACACGA-CTCGTACGTGATG
*
2386743 AAG-GATGGCAT-ACCATCTTTAGGATGATAACACGGTTCCTATGTGATGAGGACGGTTGGTTAT
64 AAGAG-T-GC-TGACCATCTTTAGGATGATAACACGGTTCCTATGTGATGAGGACGGCTGGTTAT
2386806 CTA
126 CTA
2386809 TGTGTGATAA
Statistics
Matches: 115, Mismatches: 8, Indels: 13
0.85 0.06 0.10
Matches are distributed among these distances:
130 41 0.36
131 1 0.01
132 6 0.05
133 65 0.57
134 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (130 bp):
GGTGACACGACTCCTACGTGATGAGGAGGACTGGTCGGTGGATGACACGACTCGTACGTGATGAA
GAGTGCTGACCATCTTTAGGATGATAACACGGTTCCTATGTGATGAGGACGGCTGGTTATCTAGG
Found at i:2386820 original size:46 final size:46
Alignment explanation
Indices: 2386767--2386861 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 46
2386757 ATCTTTAGGA
* * * * *
2386767 TGATAACACGGTTCCTATGTGATGAGGACGGTTGGTTATCTATGTG
1 TGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGTG
2386813 TGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGTG
1 TGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGTG
2386859 TGA
1 TGA
2386862 CGCAGCTCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.31
Consensus pattern (46 bp):
TGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGTG
Found at i:2386846 original size:176 final size:178
Alignment explanation
Indices: 2386636--2386988 Score: 480
Period size: 176 Copynumber: 2.0 Consensus size: 178
2386626 CTTTAGGAAG
* * * *
2386636 GTGATAACACGGTTCCTATGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGGCTCCTACGTG
1 GTGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGGGTGACACAGCTCCTACGTG
* * * *
2386701 ATGA-GGAGGAC-TGGTCGAGGGATGACACAGTTCGTAGGTGATAAGGATGGCATACCATCTTTA
66 AT-ATGGAGG-CTTGGTCGAGGGATGACACAGTTCCTAGGTGATAAGGACGGCAGACAATCTTTA
* *
2386764 GG-AT-GATAACACGGTTCCTATGTGATGAGGACGGTTGGTTATCTATGT
129 GGAATCGATAACACGGTTCCTACGTGATGAGGACGGTCGGTTATCTATGT
* *
2386812 GTGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGTGTGACGCAGCTCCTACGTG
1 GTGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGGGTGACACAGCTCCTACGTG
* * * * *
2386877 ATATGGAGGCTTGGTCGGGGGATGACATAGTTCCTATGTGATGAGGACGGTAGACAATCTTTAGG
66 ATATGGAGGCTTGGTCGAGGGATGACACAGTTCCTAGGTGATAAGGACGGCAGACAATCTTTAGG
*
2386942 AAATGCGATAACACGGTTCCTACGTGATGAGGATGGTCGGTTATCTA
131 -AAT-CGATAACACGGTTCCTACGTGATGAGGACGGTCGGTTATCTA
2386989 GGGGTGACAT
Statistics
Matches: 153, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
175 2 0.01
176 111 0.73
178 2 0.01
180 38 0.25
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (178 bp):
GTGATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGGGTGACACAGCTCCTACGTG
ATATGGAGGCTTGGTCGAGGGATGACACAGTTCCTAGGTGATAAGGACGGCAGACAATCTTTAGG
AATCGATAACACGGTTCCTACGTGATGAGGACGGTCGGTTATCTATGT
Found at i:2387048 original size:134 final size:134
Alignment explanation
Indices: 2386814--2387075 Score: 316
Period size: 134 Copynumber: 2.0 Consensus size: 134
2386804 ATCTATGTGT
* *
2386814 GATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGTGTGACGCAGCTCCTACGTGAT
1 GATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGGGTGACACAGCTCCTACGTGAT
* * * *
2386879 ATGGAGGCTTGGTCGGGGGATGACATAGTTCCTATGTGATGAGGACGGTAGACAATCTTTAGGAA
66 ATGGAGGCTTAGTCGGGGGATGACAGAGTTCCTATGCGATGAGGACGATAGACAATCTTTAGGAA
2386944 ATGC
131 ATGC
* * * **
2386948 GATAACACGGTTCCTACGTGATGAGGATGG-TCGGTTATCTAGGGGTGACATGGCTCCTACGTGA
1 GATAACACGGTTCCCACGTGATGAGAACGGCT-GGTTATCTAGGGGTGACACAGCTCCTACGTGA
* * * * *
2387012 TGA-GGAGG-TCTAGTCGGTGGATGACACGA-TTTCTATGCGATGAGGATGATAGGCCATCTTTA
65 T-ATGGAGGCT-TAGTCGGGGGATGACA-GAGTTCCTATGCGATGAGGACGATAGACAATCTTTA
2387074 GG
127 GG
2387076 GATAATGGTT
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
133 2 0.02
134 104 0.96
135 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (134 bp):
GATAACACGGTTCCCACGTGATGAGAACGGCTGGTTATCTAGGGGTGACACAGCTCCTACGTGAT
ATGGAGGCTTAGTCGGGGGATGACAGAGTTCCTATGCGATGAGGACGATAGACAATCTTTAGGAA
ATGC
Found at i:2387247 original size:66 final size:64
Alignment explanation
Indices: 2387119--2387368 Score: 258
Period size: 66 Copynumber: 3.9 Consensus size: 64
2387109 GATGCTTAAT
* ** * * *
2387119 GAGAAACTGTCTC-AAGAGAGATAAAATTTGTTTCAAGGGAGATGATCTTAAAGAT-TGGTGTTT
1 GAGAAACTGTCTCAAAG-GAGACAAAATTCATTTCAAGGGAAACGA-CTCAAAGATAT--TGTTT
*
2387182 CAC
62 CAA
* * *
2387185 GAGAAACTGTCTCAAAGGAGACAAAATTCATTTCAAGGGAAACAATCTCAAATATATATGTTTAA
1 GAGAAACTGTCTCAAAGGAGACAAAATTCATTTCAAGGGAAACGA-CTCAAAGATAT-TGTTTCA
2387250 A
64 A
* * * *
2387251 GAGAAATTGTCTCAATGGAGACAAAATTCGTTTTAAGGGAAACGACTCAAAGATGATTGTTTCAA
1 GAGAAACTGTCTCAAAGGAGACAAAATTCATTTCAAGGGAAACGACTCAAAGAT-ATTGTTTCAA
*
2387316 TAGAATA-TGTCTCAAA--AGACAAAATTCATTTCAAGGGAAACGACTCAAAGATA
1 GAGAA-ACTGTCTCAAAGGAGACAAAATTCATTTCAAGGGAAACGACTCAAAGATA
2387369 ATTATTATTT
Statistics
Matches: 158, Mismatches: 22, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
62 1 0.01
63 34 0.22
65 27 0.17
66 92 0.58
67 4 0.03
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (64 bp):
GAGAAACTGTCTCAAAGGAGACAAAATTCATTTCAAGGGAAACGACTCAAAGATATTGTTTCAA
Found at i:2387386 original size:131 final size:131
Alignment explanation
Indices: 2387114--2387388 Score: 310
Period size: 132 Copynumber: 2.1 Consensus size: 131
2387104 CAGATGATGC
* * * * *
2387114 TTAATGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAGGGAGATGATCTTAAAGATTGGTG
1 TTAATGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATTGGTG
* *
2387179 TTTCACGAGAAACTGTCTCAAAGGAGACAAAATTCATTTCAAGGGAAACAATCTCAAATATATAT
66 TTTCAAGAGAAACTGTCTCAAA-GAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGATATAT
*
2387244 GT
130 AT
* * * *
2387246 TTAAAGAGAAATTGTCTCAATG-GAGACAAAATTCGTTTTAAGGGAAACGA-CTCAAAGA-TGAT
1 TTAATGAGAAACTGTCTCAA-GAGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATTG-G
* *
2387308 TGTTTCAATAGAATA-TGTCTCAAA-AGACAAAATTCATTTCAAGGGAAACGA-CTCAAAGATAA
64 TGTTTCAAGAGAA-ACTGTCTCAAAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGAT-A
2387370 TTATTAT
127 -TA-TAT
*
2387377 TTCATGAGAAAC
1 TTAATGAGAAAC
2387389 GGCTTCAAGG
Statistics
Matches: 120, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
128 8 0.07
129 27 0.22
130 4 0.03
131 38 0.32
132 42 0.35
133 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.28
Consensus pattern (131 bp):
TTAATGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACGATCTCAAAGATTGGTG
TTTCAAGAGAAACTGTCTCAAAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGATATATA
T
Found at i:2388163 original size:29 final size:29
Alignment explanation
Indices: 2387968--2388161 Score: 117
Period size: 30 Copynumber: 6.5 Consensus size: 29
2387958 TTAGTAAAAC
* *
2387968 AAAGGACTAAATAGAAAAAACAGCAATTT
1 AAAGGACTAAATAGAAAAAACAGAAACTT
*
2387997 ACAA-GACTAAAGTAGAAAAAACAAAAACTT
1 A-AAGGACTAAA-TAGAAAAAACAGAAACTT
** * * * *
2388027 ATGGGATGTAAATAGCACAAACAAAAACTT
1 AAAGGA-CTAAATAGAAAAAACAGAAACTT
*
2388057 AAAGGACTAAAATAG-AAAAATA-AAACTTT
1 AAAGGACT-AAATAGAAAAAACAGAAAC-TT
* * *
2388086 AAACGACTGGAATAGCAAACAAATC-GAAACTC
1 AAAGGACT-AAATAG-AAA-AAA-CAGAAACTT
* * * *
2388118 AAACGATTAAAATAGTAAAAATAGAAACTT
1 AAAGGACT-AAATAGAAAAAACAGAAACTT
2388148 AAAGGACTAAATAG
1 AAAGGACTAAATAG
2388162 TAATTACAAA
Statistics
Matches: 127, Mismatches: 26, Indels: 24
0.72 0.15 0.14
Matches are distributed among these distances:
28 4 0.03
29 34 0.27
30 61 0.48
31 8 0.06
32 16 0.13
33 4 0.03
ACGTcount: A:0.57, C:0.12, G:0.13, T:0.18
Consensus pattern (29 bp):
AAAGGACTAAATAGAAAAAACAGAAACTT
Found at i:2389501 original size:12 final size:12
Alignment explanation
Indices: 2389483--2389530 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
2389473 CATGTAAATT
2389483 AATAATAATAAA
1 AATAATAATAAA
*
2389495 CATAATAATAAA
1 AATAATAATAAA
*
2389507 AATAAAAAATATAA
1 AAT-AATAATA-AA
*
2389521 TATAATAATA
1 AATAATAATA
2389531 TTTTTGGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 13 0.45
13 12 0.41
14 4 0.14
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:2402756 original size:60 final size:59
Alignment explanation
Indices: 2402675--2402788 Score: 183
Period size: 60 Copynumber: 1.9 Consensus size: 59
2402665 GAATACACTA
** * *
2402675 AAGGATACCTAGTGTATATGGTGGGCACGACCTTATGTGTCATATTCAGGAATTGTACTT
1 AAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATA-TCAGGAATTGTACTT
2402735 AAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATATCAGGAATTG
1 AAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATATCAGGAATTG
2402789 CACTACGGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 10 0.20
60 40 0.80
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (59 bp):
AAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATATCAGGAATTGTACTT
Found at i:2402869 original size:20 final size:20
Alignment explanation
Indices: 2402844--2402889 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
2402834 TTGTATATTG
* * *
2402844 GGTTATTTTCTATTGTTTAT
1 GGTTATTGTCTATGGTATAT
2402864 GGTTATTGTCTATGGTATAT
1 GGTTATTGTCTATGGTATAT
2402884 GGTTAT
1 GGTTAT
2402890 GGAATAATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.04, G:0.22, T:0.57
Consensus pattern (20 bp):
GGTTATTGTCTATGGTATAT
Found at i:2402956 original size:46 final size:45
Alignment explanation
Indices: 2402886--2402993 Score: 155
Period size: 46 Copynumber: 2.4 Consensus size: 45
2402876 TGGTATATGG
* * *
2402886 TTATGGAAT-AATGGCAAGTGTATTGGTAAAATAAGCTTACGAGC
1 TTATGGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
* *
2402930 TTATGGTATTAAATGGTAAGTATATTGGTAAAATAAGCTTACTAGC
1 TTATGGGA-TAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
2402976 TTATGGGATAAATGGTAA
1 TTATGGGATAAATGGTAA
2402994 AAGATTTTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
44 7 0.12
45 11 0.19
46 39 0.68
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.33
Consensus pattern (45 bp):
TTATGGGATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
Found at i:2409603 original size:20 final size:20
Alignment explanation
Indices: 2409578--2409620 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
2409568 TATATTGGGG
* *
2409578 TATTGTCTATTGTTTATGGT
1 TATTGTCTATGGTATATGGT
2409598 TATTGTCTATGGTATATGGT
1 TATTGTCTATGGTATATGGT
2409618 TAT
1 TAT
2409621 GGAATAATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.05, G:0.21, T:0.56
Consensus pattern (20 bp):
TATTGTCTATGGTATATGGT
Found at i:2414886 original size:2 final size:2
Alignment explanation
Indices: 2414879--2414934 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
2414869 CATCAAAAAC
2414879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2414921 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
2414935 GATTCTAAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2417128 original size:3 final size:3
Alignment explanation
Indices: 2417122--2417278 Score: 165
Period size: 3 Copynumber: 51.7 Consensus size: 3
2417112 TCATTTAAAT
* *
2417122 TTA TTA TTA TTA TTA -AA TTTA TTA TTA TTA TTA TTA TTAA ATA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
* * * *
2417168 TTA TTA GTA TTA TTA TTA TTA TAA TAA TAA TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * *
2417214 TTA TTA TTA TAA TAA TAA TAA TTA TTA TTA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
2417260 ATA TTA -TA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
2417279 TAATAAATAA
Statistics
Matches: 136, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
2 3 0.02
3 124 0.91
4 9 0.07
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:2417168 original size:37 final size:34
Alignment explanation
Indices: 2417126--2417280 Score: 190
Period size: 34 Copynumber: 4.4 Consensus size: 34
2417116 TTAAATTTAT
* *
2417126 TATTATTATTAAATTTATTATTATTATTATTATTAAA
1 TATTATTATT--ATTTATTATTATTA-TAATAATAAA
*
2417163 TATTATTATTAGTATTATTATTATTATAATAATAAT
1 TATTATTATTA-T-TTATTATTATTATAATAATAAA
2417199 TATTATTATTATTTATTATTATTATAATAAT-AA
1 TATTATTATTATTTATTATTATTATAATAATAAA
*
2417232 TAATTATTATTATTTATTATTATTAT--TAATATTA
1 T-ATTATTATTATTTATTATTATTATAATAATA-AA
2417266 TATTATTATTATTTA
1 TATTATTATTATTTA
2417281 ATAAATAATT
Statistics
Matches: 108, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
32 4 0.04
33 16 0.15
34 45 0.42
35 2 0.02
36 19 0.18
37 22 0.20
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (34 bp):
TATTATTATTATTTATTATTATTATAATAATAAA
Found at i:2417179 original size:34 final size:36
Alignment explanation
Indices: 2417141--2417278 Score: 174
Period size: 37 Copynumber: 3.9 Consensus size: 36
2417131 TTATTAAATT
* *
2417141 TATTATTATTATTATTAT--TAAATATTATTATTAG
1 TATTATTATTATTATTATAATAATTATTATTATTAT
*
2417175 TATTATTATTATTATAATAATAATTATTATTATTATT
1 TATTATTATTATTATTATAATAATTATTATTATTA-T
* *
2417212 TATTATTATTATAATAATAATAATTATTATTATTTAT
1 TATTATTATTATTATTATAATAATTATTATTA-TTAT
* *
2417249 TATTATTATTAATATTAT-ATTATTATTATT
1 TATTATTATTATTATTATAATAATTATTATT
2417279 TAATAAATAA
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
34 17 0.18
36 25 0.27
37 47 0.51
38 3 0.03
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (36 bp):
TATTATTATTATTATTATAATAATTATTATTATTAT
Found at i:2423711 original size:3 final size:3
Alignment explanation
Indices: 2423705--2423772 Score: 111
Period size: 3 Copynumber: 22.7 Consensus size: 3
2423695 CTCTATTTAC
*
2423705 TAT TAT TAT TATT TAT TAT TAT TAT TAT GAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2423751 TAT TAT TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
2423773 CAAACCGGCC
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.92
4 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:2425854 original size:27 final size:27
Alignment explanation
Indices: 2425814--2425878 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
2425804 AAAAGTTCAT
* *
2425814 ATATTTAATTTTTAATTCTTTCTTTCAAA
1 ATATTT-ATATTTAATTATTT-TTTCAAA
* *
2425843 AT-TTTATATTTACTTATTTTTTCATA
1 ATATTTATATTTAATTATTTTTTCAAA
2425869 ATATTTATAT
1 ATATTTATAT
2425879 GTTTCATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 8 0.26
27 18 0.58
28 3 0.10
29 2 0.06
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTTATATTTAATTATTTTTTCAAA
Found at i:2437594 original size:83 final size:83
Alignment explanation
Indices: 2437479--2437881 Score: 664
Period size: 83 Copynumber: 4.8 Consensus size: 83
2437469 ACATTAGTTG
* * *
2437479 GAAAGATGAATGTGCCCAATAGCATCTTCTGGAAGTGTTTTTTGAGTTATCTAATCTGGTTTGGT
1 GAAAGATGAATGTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGT
2437544 AAAACCAATCATTGAATTT
65 AAAACCAATCATTGAATTT
2437563 GAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
1 GAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
* *
2437628 AAACCAGTTATTGAATTT
66 AAACCAATCATTGAATTT
* *
2437646 GGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
1 GAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
2437711 AAACCAATCATTGAATTT
66 AAACCAATCATTGAATTT
*
2437729 GAAAGATGAATGTGCTCATAGCATCATCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
1 GAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
* *
2437794 AAA-CAGTTATTGAATTT
66 AAACCAATCATTGAATTT
* * *
2437811 GGAAGATGAATGTGCTCATAGCATCTTCTAGAAGTGTGCTTTGAGTTATCTGATCTGGTTTGGTA
1 GAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
2437876 TAAACC
66 -AAACC
2437882 CCAAAACCAA
Statistics
Matches: 299, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
82 73 0.24
83 209 0.70
84 17 0.06
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (83 bp):
GAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
AAACCAATCATTGAATTT
Found at i:2438915 original size:110 final size:112
Alignment explanation
Indices: 2438712--2439134 Score: 621
Period size: 110 Copynumber: 3.8 Consensus size: 112
2438702 ATTTAAATTC
*
2438712 ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAT
1 ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
2438777 GAAGAAGTTCATAATGAGAAGAATTTGTTCACCTTTTGC-CAAATCT
66 GAAGAAGTTCATAATGAGAAGAATTTGTTCACCTTTTGCTCAAATCT
* * *
2438823 ATCACTTAATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAATAA-TCATCTGAAGAAGGAT
1 ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
*
2438887 GGAGAAGTTCATAATGAGAAGAATTTGTTCAACC-TTTGCTC-AATCT
66 GAAGAAGTTCATAATGAGAAGAATTTGTTC-ACCTTTTGCTCAAATCT
2438933 ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAA-TCA--TGAAGAAGGAA
1 ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
* *
2438995 GGAAGAAGTTCATAAT--GAAGAATTTGTTCAACTTTTGCTCAAATCC
66 -GAAGAAGTTCATAATGAGAAGAATTTGTTCACCTTTTGCTCAAATCT
** * ****
2439041 ATCACTTGATGGATTAGATTTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
1 ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
* *
2439106 GAAGAAGTTCATAATAAGAAGAACTTGTT
66 GAAGAAGTTCATAATGAGAAGAATTTGTT
2439135 TAACCCTTTT
Statistics
Matches: 285, Mismatches: 17, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
106 2 0.01
107 20 0.07
108 55 0.19
109 17 0.06
110 119 0.42
111 61 0.21
112 11 0.04
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (112 bp):
ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAATTTGTTCACCTTTTGCTCAAATCT
Found at i:2439196 original size:113 final size:113
Alignment explanation
Indices: 2438707--2439214 Score: 551
Period size: 110 Copynumber: 4.6 Consensus size: 113
2438697 CAAAGATTTA
* * ***
2438707 AATTC-ATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AATTCTATCACTTGATGGATTAGCATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAG
*
2438771 AAGGATGAAGAAGTTCATAATGAGAAGAATTTGTTC-ACCTTTTGC-C
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * * *** *
2438817 AAATCTATCACTTAATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAATAA-TCATCTGAAG
1 AATTCTATCACTTGATGGATTAGCATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAG
* *
2438881 AAGGATGGAGAAGTTCATAATGAGAAGAATTTGTTCAACC-TTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * ***
2438928 AA-TCTATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAATGAGAAGAA-TCA--TGAAG
1 AATTCTATCACTTGATGGATTAGCATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAG
2438989 AAGGAAGGAAGAAGTTCATAAT--GAAGAATTTGTTCAA-CTTTTGCTC
66 AAGGAA-GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * *
2439035 AAATCCATCACTTGATGGATTAG-ATTTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AATTCTATCACTTGATGGATTAGCATTT-CCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAA
* * * *
2439099 GAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTTAACCCTTTT-CTTG
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CCTTTTGC-TC
* * * *** * *
2439149 AATTC-ATCATTTGAGGGATCAGCAGCACCAAAGAGAGTTCATAATGAGAAGAACTCATCTAAAG
1 AATTCTATCACTTGATGGATTAGCATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAG
2439213 AA
66 AA
2439215 CTTGTTTAAC
Statistics
Matches: 354, Mismatches: 28, Indels: 29
0.86 0.07 0.07
Matches are distributed among these distances:
106 1 0.00
107 27 0.08
108 50 0.14
109 17 0.05
110 121 0.34
111 63 0.18
112 13 0.04
113 51 0.14
114 11 0.03
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (113 bp):
AATTCTATCACTTGATGGATTAGCATTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:2439387 original size:87 final size:86
Alignment explanation
Indices: 2439124--2439387 Score: 386
Period size: 86 Copynumber: 3.1 Consensus size: 86
2439114 TCATAATAAG
* * *
2439124 AAGAACTTGTTTAACCCTTTTCTTGAATTCATCATTTGAGGGATCAGCAGCACCAAAGAGAGTTC
1 AAGAACTTGTTTAACCCTTTTGTTGAATTCATCATTTGATGGATCAGCAACACCAAAGAGAGTTC
2439189 ATAATGAGAAGAACTCATCTA
66 ATAATGAGAAGAACTCATCTA
*
2439210 AAGAACTTGTTTAACCC-TTTGCTTGAATTCATCATTTGATGGATCAGCAACGCCAAAGAGAGTT
1 AAGAACTTGTTTAACCCTTTTG-TTGAATTCATCATTTGATGGATCAGCAACACCAAAGAGAGTT
2439274 CATAATGAGAAGAACTCATCTA
65 CATAATGAGAAGAACTCATCTA
* * * **** *
2439296 AAGAACTTGTTTAACCCTTTTGTTCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAGAGTT
1 AAGAACTTGTTTAACCCTTTTGTT-GAATTCATCATTTGATGGATCAGCAACACCAAAGAGAGTT
*
2439361 CATAATGAGAAGAACTCATCTG
65 CATAATGAGAAGAACTCATCTA
2439383 AAGAA
1 AAGAA
2439388 GGAAGAAGAA
Statistics
Matches: 162, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
85 3 0.02
86 97 0.60
87 62 0.38
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (86 bp):
AAGAACTTGTTTAACCCTTTTGTTGAATTCATCATTTGATGGATCAGCAACACCAAAGAGAGTTC
ATAATGAGAAGAACTCATCTA
Found at i:2439479 original size:113 final size:110
Alignment explanation
Indices: 2439296--2439650 Score: 420
Period size: 113 Copynumber: 3.2 Consensus size: 110
2439286 AACTCATCTA
* *
2439296 AAGAACTTGTTTAACCCTTTTGTTCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAGAGTT
1 AAGAACTTGTTCAA-CCTTTTGTTCAAATCCATCACTTGATGAAT-AGCTTTTCCAG-GAGAGTT
2439361 CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAG
63 CATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCATAATAAG
* * * * * * *
2439410 AAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGAATTAACATTGCCAGGTAGAGTTC
1 AAGAACTTGTTCAACCTTTTGTTCAAATCCATCACTTGATGAA-TAGCTTTTCCAGG-AGAGTTC
*
2439475 ATAATGAGAAGAACTCGTCATCTGAAGAAGAAG-A-AA-TTCATAATGAG
64 ATAATGAGAAGAA--C-TCATCTGAAGAAGAAGAAGAAGTTCATAATAAG
* *
2439522 AAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATAGAGA-AGCTTTTCCA-GAGAAGTT
1 AAGAACTTGTTCAACCTTTTGTTCAAATCCATCACTTGAT-GA-ATAGCTTTTCCAGGAG-AGTT
2439585 CATAATGAGAAGAACTCATCT---GAAGAAGAAGAAGTTCATAATAAG
63 CATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATAAG
* *
2439630 AAGAGCTTGTTCAACTTTTTG
1 AAGAACTTGTTCAACCTTTTG
2439651 CATAATTATA
Statistics
Matches: 209, Mismatches: 21, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
105 7 0.03
106 1 0.00
107 2 0.01
108 34 0.16
109 1 0.00
110 2 0.01
111 19 0.09
112 54 0.26
113 57 0.27
114 15 0.07
115 5 0.02
116 12 0.06
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (110 bp):
AAGAACTTGTTCAACCTTTTGTTCAAATCCATCACTTGATGAATAGCTTTTCCAGGAGAGTTCAT
AATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATAAG
Found at i:2439632 original size:17 final size:17
Alignment explanation
Indices: 2439578--2439633 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
2439568 GCTTTTCCAG
*
2439578 AGAAGTTCATAATGAGA
1 AGAAGTTCATAATAAGA
* *
2439595 AGAA-CTCATCTGAAGAAGA
1 AGAAGTTCA--T-AATAAGA
2439614 AGAAGTTCATAATAAGA
1 AGAAGTTCATAATAAGA
2439631 AGA
1 AGA
2439634 GCTTGTTCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
16 3 0.10
17 13 0.43
18 2 0.07
19 9 0.30
20 3 0.10
ACGTcount: A:0.50, C:0.09, G:0.21, T:0.20
Consensus pattern (17 bp):
AGAAGTTCATAATAAGA
Found at i:2439640 original size:108 final size:107
Alignment explanation
Indices: 2439296--2439651 Score: 419
Period size: 112 Copynumber: 3.2 Consensus size: 107
2439286 AACTCATCTA
* * *
2439296 AAGAACTTGTTTAACCCTTTTGTTCAAATCCATCACTTGATGGATCAGCTTTTCCAGAGAGAGTT
1 AAGAACTTGTTCAA-CCTTTTGCTCAAATCCATCACTTGAT-GA-AAGCTTTTCCAGAGAGAGTT
2439361 CATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAG
63 CATAATGAGAAGAACTCATCT---GAA-GAAGAAGAAGTTCATAATAAG
* * * * * * * *
2439410 AAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGAATTAACATTGCCAG-GTAGAGTT
1 AAGAACTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAA--AGCTTTTCCAGAG-AGAGTT
* *
2439474 CATAATGAGAAGAACTCGTCATCTGAAGAAGAAGAAATTCATAATGAG
63 CATAATGAGAAGAA--C-TCATCTGAAGAAGAAGAAGTTCATAATAAG
*
2439522 AAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATAGAGAAGCTTTTCCAGAGA-AGTTC
1 AAGAACTTGTTCAACCTTTTGCTCAAATCCATCACTTGAT-GA-AAGCTTTTCCAGAGAGAGTTC
2439586 ATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATAAG
64 ATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATAAG
* *
2439630 AAGAGCTTGTTCAACTTTTTGC
1 AAGAACTTGTTCAACCTTTTGC
2439652 ATAATTATAT
Statistics
Matches: 210, Mismatches: 23, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
108 47 0.22
109 1 0.00
111 18 0.09
112 67 0.32
113 57 0.27
114 13 0.06
115 1 0.00
116 6 0.03
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (107 bp):
AAGAACTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGAAAGCTTTTCCAGAGAGAGTTCAT
AATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATAAG
Found at i:2439972 original size:3 final size:3
Alignment explanation
Indices: 2439966--2440039 Score: 107
Period size: 3 Copynumber: 24.7 Consensus size: 3
2439956 CTCCATTTAC
2439966 TAT TAT TAT TATT TAT TAT TAT TAT T-T TGAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
*
2440012 TAT TAT TTT TAT TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
2440040 CAAACGGGCC
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
2 4 0.06
3 56 0.86
4 5 0.08
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:2441198 original size:2 final size:2
Alignment explanation
Indices: 2441191--2441223 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
2441181 TTAGTCATAA
*
2441191 AT AT AT AT AT AT AT AT AT AT AT A- AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2441224 TTTTTAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:2444338 original size:34 final size:34
Alignment explanation
Indices: 2444295--2444419 Score: 129
Period size: 34 Copynumber: 3.8 Consensus size: 34
2444285 TTCGTCCTAC
2444295 TAGGATTCAAACTCCTAAAAATATGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATATGATAGAATTT
*
2444329 TAGGATTCAAACTCCTAAAGATATGATAGAATTTT
1 TAGGATTCAAACTCCTAAAAATATGATAGAA-TTT
*
2444364 GCTAGGATTC--A-----AAAAATAGGATAGAATTT
1 --TAGGATTCAAACTCCTAAAAATATGATAGAATTT
* * *
2444393 TATGATTTAAACTCCTAAAGATATGAT
1 TAGGATTCAAACTCCTAAAAATATGAT
2444420 CCACAAGCAC
Statistics
Matches: 74, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
27 6 0.08
29 4 0.05
30 13 0.18
34 39 0.53
35 4 0.05
37 8 0.11
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.33
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATATGATAGAATTT
Found at i:2444803 original size:17 final size:18
Alignment explanation
Indices: 2444777--2444816 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
2444767 ATTATATGGA
2444777 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
2444793 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
2444811 TATTAT
1 TATTAT
2444817 ATATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:2444821 original size:2 final size:2
Alignment explanation
Indices: 2444814--2444892 Score: 51
Period size: 2 Copynumber: 40.5 Consensus size: 2
2444804 ATGTTATTAT
* * * *
2444814 TA TA TA TA TA TA TA TA TA TA -A T- TA T- TT TCA TT TA TT TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
*
2444854 CTA TA T- TT TA CTA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2444893 TTCTTTAATA
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
1 5 0.08
2 53 0.84
3 5 0.08
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (2 bp):
TA
Found at i:2444844 original size:56 final size:54
Alignment explanation
Indices: 2444784--2444934 Score: 164
Period size: 54 Copynumber: 2.7 Consensus size: 54
2444774 GGATATTTTA
* *
2444784 TTCATTTATTTTTATTATTCATGTTATTATTATATATATATATATATATAATTATT
1 TTCATTTATTTTTACTA-T-ATGTTACTATTATATATATATATATATATAATTATT
*
2444840 TTCATTTATTTTTACTATATTTTACTATTATATATATATATATATAT-A-TATAT
1 TTCATTTATTTTTACTATATGTTACTATTATATATATATATATATATAATTAT-T
* * *
2444893 TTC-TTTAATATTCTACTATAAGTCTATTATTACTATATATAT
1 TTCATTT-AT-TTTTACTATATGT-TACTATTA-TATATATAT
2444935 GTAATTATCT
Statistics
Matches: 83, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
52 6 0.07
53 7 0.08
54 37 0.45
55 8 0.10
56 25 0.30
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.58
Consensus pattern (54 bp):
TTCATTTATTTTTACTATATGTTACTATTATATATATATATATATATAATTATT
Found at i:2445356 original size:4 final size:4
Alignment explanation
Indices: 2445332--2445373 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
2445322 ATTACTTTAC
*
2445332 TATT T-TT TCTT TATCT TATT TATT TATT TATT TATTT TATT T
1 TATT TATT TATT TAT-T TATT TATT TATT TATT TA-TT TATT T
2445374 TTCCCTTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
3 3 0.09
4 23 0.68
5 8 0.24
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:2445360 original size:8 final size:8
Alignment explanation
Indices: 2445332--2445373 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 8
2445322 ATTACTTTAC
2445332 TATTT-TT
1 TATTTATT
*
2445339 TCTTTATCT
1 TATTTAT-T
2445348 TATTTATT
1 TATTTATT
2445356 TATTTATT
1 TATTTATT
2445364 TATTTTATT
1 TA-TTTATT
2445373 T
1 T
2445374 TTCCCTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 4 0.13
8 12 0.40
9 14 0.47
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTATT
Found at i:2445366 original size:21 final size:20
Alignment explanation
Indices: 2445332--2445373 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
2445322 ATTACTTTAC
*
2445332 TATTTTTTCTTTATCTTATT
1 TATTTTTTATTTATCTTATT
*
2445352 TATTTATTTATTTATTTTATT
1 TATTT-TTTATTTATCTTATT
2445373 T
1 T
2445374 TTCCCTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (20 bp):
TATTTTTTATTTATCTTATT
Found at i:2448390 original size:7 final size:7
Alignment explanation
Indices: 2448378--2448458 Score: 56
Period size: 7 Copynumber: 10.3 Consensus size: 7
2448368 TCCAATCAAG
2448378 AAGAAAA
1 AAGAAAA
2448385 AAGAAAA
1 AAGAAAA
2448392 GAAGCAAAA
1 -AAG-AAAA
2448401 AA-AAACA
1 AAGAAA-A
2448408 AAGAAAAACA
1 AAG--AAA-A
2448418 AAGAAAA
1 AAGAAAA
2448425 AAGAGAAA
1 AAGA-AAA
*
2448433 CACGAACAA
1 -AAGAA-AA
2448442 AAGGAAAA
1 AA-GAAAA
2448450 AAGAAAA
1 AAGAAAA
2448457 AA
1 AA
2448459 AACAAGAATC
Statistics
Matches: 62, Mismatches: 2, Indels: 20
0.74 0.02 0.24
Matches are distributed among these distances:
6 3 0.05
7 22 0.35
8 17 0.27
9 12 0.19
10 8 0.13
ACGTcount: A:0.78, C:0.07, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:2448414 original size:9 final size:10
Alignment explanation
Indices: 2448396--2448425 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
2448386 AGAAAAGAAG
*
2448396 CAAAAAAAAA
1 CAAAGAAAAA
2448406 CAAAGAAAAA
1 CAAAGAAAAA
2448416 CAAAGAAAAA
1 CAAAGAAAAA
2448426 AGAGAAACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (10 bp):
CAAAGAAAAA
Found at i:2448431 original size:19 final size:21
Alignment explanation
Indices: 2448378--2448432 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
2448368 TCCAATCAAG
2448378 AAGAAAAAAGA-AAAGAAGCA
1 AAGAAAAAAGAGAAAGAAGCA
* *
2448398 AAAAAAAACAAAGAAA-AA-CA
1 AAGAAAAA-AGAGAAAGAAGCA
2448418 AAGAAAAAAGAGAAA
1 AAGAAAAAAGAGAAA
2448433 CACGAACAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 6 0.21
20 16 0.55
21 4 0.14
22 3 0.10
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (21 bp):
AAGAAAAAAGAGAAAGAAGCA
Found at i:2448477 original size:45 final size:46
Alignment explanation
Indices: 2448400--2448488 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 46
2448390 AAGAAGCAAA
2448400 AAAAAACAAAGAAAAACAAAGAAAAAAGAGAAACACGAACAAAAGG
1 AAAAAACAAAGAAAAACAAAGAAAAAAGAGAAACACGAACAAAAGG
* * *
2448446 AAAAAAGAAA-AAAAAC-AAGAATCAAAA-AGAAAGAGGAACAAAA
1 AAAAAACAAAGAAAAACAAAGAA--AAAAGAGAAACACGAACAAAA
2448489 AGCACATGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
44 5 0.13
45 20 0.53
46 13 0.34
ACGTcount: A:0.75, C:0.09, G:0.15, T:0.01
Consensus pattern (46 bp):
AAAAAACAAAGAAAAACAAAGAAAAAAGAGAAACACGAACAAAAGG
Found at i:2448489 original size:29 final size:28
Alignment explanation
Indices: 2448382--2448477 Score: 81
Period size: 25 Copynumber: 3.3 Consensus size: 28
2448372 ATCAAGAAGA
*
2448382 AAAAAGAAAAGAAGCAAAAAAAAACAAAGAAA
1 AAAAAGAAAA-AAG--AAAAAAAAC-AAGAAC
* *
2448414 AACAAAGAAAAAAG---AGAAACACGAAC
1 AA-AAAGAAAAAAGAAAAAAAACAAGAAC
*
2448440 AAAAGGAAAAAAGAAAAAAAACAAGAATC
1 AAAAAGAAAAAAGAAAAAAAACAAGAA-C
2448469 AAAAAGAAA
1 AAAAAGAAA
2448478 GAGGAACAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
25 10 0.19
26 6 0.12
27 5 0.10
28 9 0.17
29 9 0.17
32 5 0.10
33 8 0.15
ACGTcount: A:0.77, C:0.08, G:0.14, T:0.01
Consensus pattern (28 bp):
AAAAAGAAAAAAGAAAAAAAACAAGAAC
Found at i:2449137 original size:22 final size:22
Alignment explanation
Indices: 2449109--2449152 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
2449099 AGCTACCCCA
2449109 TCAAACC-TTTGAGCATCAAATG
1 TCAAACCATTT-AGCATCAAATG
2449131 TCAAACCATTTAGCATCAAATG
1 TCAAACCATTTAGCATCAAATG
2449153 AACAAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (22 bp):
TCAAACCATTTAGCATCAAATG
Found at i:2449610 original size:18 final size:18
Alignment explanation
Indices: 2449587--2449622 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2449577 TCAACATCAA
*
2449587 ATATTGGGGCATTTTTGG
1 ATATTGGGGCATCTTTGG
2449605 ATATTGGGGCATCTTTGG
1 ATATTGGGGCATCTTTGG
2449623 GGATTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.08, G:0.33, T:0.42
Consensus pattern (18 bp):
ATATTGGGGCATCTTTGG
Found at i:2450146 original size:36 final size:36
Alignment explanation
Indices: 2450103--2450383 Score: 312
Period size: 36 Copynumber: 8.0 Consensus size: 36
2450093 ACTAGAAGAG
2450103 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
2450139 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * *
2450175 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
2450211 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * * * *
2450247 ------ATAT-TTGA-ATATGTTTTCTTTGAAACAAA
1 TTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAACAAA
* * ** * *
2450276 TTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAG
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAA
*
2450313 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
2450348 TTTTCGTCTATCTTGAGACAGTTT-CCTTGAAACAAA
1 TTTT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
2450384 ATCTTTGAAT
Statistics
Matches: 205, Mismatches: 28, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.01
29 19 0.09
30 2 0.01
35 14 0.07
36 135 0.66
37 33 0.16
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:2450146 original size:71 final size:73
Alignment explanation
Indices: 2450061--2450383 Score: 248
Period size: 72 Copynumber: 4.6 Consensus size: 73
2450051 GTTTTTCTTA
* * * * * *
2450061 AAACAAGA-TTTGTCTCGCTTGAGACCGTTTTCACTAG-AA-GAGTTTTGTCTCTCTTGAGACAG
1 AAACAA-ATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACAG
2450123 TTTCCCTTG
65 TTTCCCTTG
* *
2450132 AAACAAATTTTGTCTCTCTTGAGACAG-TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACAGT
2450196 TTCCCTTG
66 TTCCCTTG
* * * * *
2450204 AAATAAATTTTGTCTCTCTTGAGACAG-TTTCCCTTGAAACAAA------ATAT-TTGA-ATATG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACA-G
* *
2450260 TTTTCTTTG
65 TTTCCCTTG
* * ** * * * * *
2450269 AAACAAATTTCGTCTCCCTTGAGACAG-TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAAC-AAATTTCGTCTATCTTGAGACAG
*
2450333 TTTCTCTTG
65 TTTCCCTTG
* *
2450342 AAAC-AATTTTCGTCTATCTTGAGACAG-TTTC-CTTGAAACAAA
1 AAACAAATTTT-GTCTCTCTTGAGACAGTTTTCACTAGAAACAAA
2450384 ATCTTTGAAT
Statistics
Matches: 205, Mismatches: 33, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
64 2 0.01
65 46 0.22
66 5 0.02
70 8 0.04
71 27 0.13
72 82 0.40
73 33 0.16
74 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (73 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTTCACTAGAAACAAATTTCGTCTATCTTGAGACAGT
TTCCCTTG
Found at i:2450327 original size:37 final size:36
Alignment explanation
Indices: 2450261--2450382 Score: 160
Period size: 37 Copynumber: 3.4 Consensus size: 36
2450251 TTGAATATGT
* *
2450261 TTTCT-TTGAAACAAATTTCGTCTCCCTTGAGACAG
1 TTTCTCTTGAAACAATTTTCGTCTCTCTTGAGACAG
* *
2450296 TTTCTTTTGGAACTAAGTTTT-GTCTCTCTTGAGACAG
1 TTTCTCTTGAAAC-AA-TTTTCGTCTCTCTTGAGACAG
*
2450333 TTTCTCTTGAAACAATTTTCGTCTATCTTGAGACAG
1 TTTCTCTTGAAACAATTTTCGTCTCTCTTGAGACAG
2450369 TTTC-CTTGAAACAA
1 TTTCTCTTGAAACAA
2450383 AATCTTTGAA
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
35 19 0.25
36 27 0.35
37 28 0.36
38 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.41
Consensus pattern (36 bp):
TTTCTCTTGAAACAATTTTCGTCTCTCTTGAGACAG
Found at i:2450344 original size:102 final size:102
Alignment explanation
Indices: 2450159--2450347 Score: 299
Period size: 102 Copynumber: 1.9 Consensus size: 102
2450149 CTTGAGACAG
*
2450159 TTTCTCTTGAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
1 TTTCTCTTGAAACAAATTTCGTCTACCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
2450224 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
66 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
* ** * *
2450261 TTTCT-TTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTCTTGAAACAAATTTCGTCTACCTTGAGACAGTTTCCCTT-GAAATAAATTTTGTCTCTCT
*
2450325 TGAGACAGTTTCTCTTGAAACAA
65 TGAGACAGTTTCCCTTGAAACAA
2450348 TTTTCGTCTA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 34 0.43
102 45 0.57
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (102 bp):
TTTCTCTTGAAACAAATTTCGTCTACCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTT
GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
Found at i:2450350 original size:137 final size:135
Alignment explanation
Indices: 2450123--2450444 Score: 441
Period size: 137 Copynumber: 2.4 Consensus size: 135
2450113 CTTGAGACAG
*
2450123 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
*
2450188 GAGACAGTTTCCCTTGAAATAAATTTT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATT
66 GAGACAGTTTCCCTTGAAATAAATTTTCGTCTATCTTGAGACAGTTT-CCTTGAAACAAAATATT
2450252 TGAATAT
130 TGAAT-T
* * * * * * * *
2450259 GTTTTCTTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTC
1 -TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCGTCTATC
* * *
2450324 TTGAGACAGTTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACAGTTTCCTTGAAACAAAATCT
64 TTGAGACAGTTTCCCTTGAAATAAATTTTCGTCTATCTTGAGACAGTTTCCTTGAAACAAAATAT
2450388 TTGAATT
129 TTGAATT
* * * *
2450395 TTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAATTACTCTTGAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
2450445 CAAAATCTTC
Statistics
Matches: 161, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
134 1 0.01
135 40 0.25
136 1 0.01
137 70 0.43
138 49 0.30
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.40
Consensus pattern (135 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
GAGACAGTTTCCCTTGAAATAAATTTTCGTCTATCTTGAGACAGTTTCCTTGAAACAAAATATTT
GAATT
Found at i:2450492 original size:68 final size:62
Alignment explanation
Indices: 2450342--2450496 Score: 168
Period size: 62 Copynumber: 2.4 Consensus size: 62
2450332 GTTTCTCTTG
** * * **
2450342 AAAC-AATTTTCGTCTATCTTGAGACAGTTTCCTTGAAACAAAATCTTTGAATTTTTCCCCTA
1 AAACAAATTTT-GTCTCCCTTGAGACAATTACCTTGAAACAAAATCTTCAAATTTTTCCCCTA
*
2450404 AAACAAATTTTGTCTCCCTTGAGACAATTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTTGTCTCCCTTGAGACAATTAC-CTTG-AA-ACAAAATCTTCAAA-TT-TTTCCCC
2450469 TA
61 TA
*
2450471 AAACATAATTTTGTTTCCCTTGAGAC
1 AAACA-AATTTTGTCTCCCTTGAGAC
2450497 CGTTTCTCAT
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
62 20 0.26
63 10 0.13
64 2 0.03
65 12 0.15
66 2 0.03
67 13 0.17
68 19 0.24
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.37
Consensus pattern (62 bp):
AAACAAATTTTGTCTCCCTTGAGACAATTACCTTGAAACAAAATCTTCAAATTTTTCCCCTA
Found at i:2450510 original size:68 final size:65
Alignment explanation
Indices: 2450342--2450512 Score: 188
Period size: 68 Copynumber: 2.6 Consensus size: 65
2450332 GTTTCTCTTG
** **
2450342 AAAC-AATTTTCGTCTATCTTGAGACAGTTTC-CTTG-AA-ACAAAATCTTTGAATTTTTCCCCT
1 AAACAAATTTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTTTCCCCT
2450403 A
65 A
* * *
2450404 AAACAAATTTTGTCTCCCTTGAGACAATTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAA-TT-TTTCCCC
2450469 TA
64 TA
* * *
2450471 AAACATAATTTTGTTTCCCTTGAGACCGTTTCTCATGAAACA
1 AAACA-AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
2450513 ACAGATATCT
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
62 20 0.22
63 10 0.11
64 2 0.02
65 12 0.13
66 2 0.02
67 13 0.14
68 31 0.34
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (65 bp):
AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTTTCCCCTA
Found at i:2451263 original size:105 final size:104
Alignment explanation
Indices: 2451127--2451317 Score: 296
Period size: 105 Copynumber: 1.8 Consensus size: 104
2451117 ATTTCAACTC
* *
2451127 CACGACGGAGGATATCGTGGCACTCGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTG
1 CACGACGGAGGATATCATGGCACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACCGCTG
2451192 GTTGTCAACGAACAACTTCCCAATTCCAGAACTGATTTTA
66 GTTGTCAAC-AACAACTTCCCAATTCCAGAACTGATTTTA
* *
2451232 CACGACGGAGGATATCAT-GCTAC-CTATGACAACACAAGTTCAACTTCACAACGAAGGGACGGC
1 CACGACGGAGGATATCATGGC-ACTCGA-GACAACACAAGTTCAACTTCACAACGAAGGGACCGC
*
2451295 TGGTTGTCAACAACAATTTCCCA
64 TGGTTGTCAACAACAACTTCCCA
2451318 GTTTCAGGGC
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
104 15 0.19
105 64 0.81
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (104 bp):
CACGACGGAGGATATCATGGCACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACCGCTG
GTTGTCAACAACAACTTCCCAATTCCAGAACTGATTTTA
Found at i:2452113 original size:34 final size:34
Alignment explanation
Indices: 2452070--2452186 Score: 122
Period size: 34 Copynumber: 3.6 Consensus size: 34
2452060 TTCGTCCTAC
2452070 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* *
2452104 TAGGATTCAAACTCCTAAAGATATGATAGAATTTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
2452139 GCTAGGATTC--A-----AAAAATAGGATAGAATTT
1 --TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* *
2452168 TATGATTTAAACTCCTAAA
1 TAGGATTCAAACTCCTAAA
2452187 GATATGATCC
Statistics
Matches: 67, Mismatches: 6, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
27 6 0.09
29 4 0.06
30 13 0.19
34 32 0.48
35 4 0.06
37 8 0.12
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:2452600 original size:2 final size:2
Alignment explanation
Indices: 2452593--2452676 Score: 59
Period size: 2 Copynumber: 42.5 Consensus size: 2
2452583 TTATTATTAT
* * *
2452593 TA TA TA TA TA TA TA TA TA TA TA T- TA AA T- TA T- TT TCA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA
* * *
2452633 TT TT TA CTA TA TT TA CTA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2452676 T
1 T
2452677 TTCTTTAATA
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
1 4 0.06
2 57 0.86
3 5 0.08
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:2452705 original size:53 final size:55
Alignment explanation
Indices: 2452597--2452719 Score: 132
Period size: 53 Copynumber: 2.3 Consensus size: 55
2452587 TATTATTATA
* **
2452597 TATATATATATATATATATTAAATTATTTTCATTTATTTTTACTATATTTACTAT
1 TATATATATATATATATATTAAATTATTTTCATTTATTTCTACTATAAGTACTAT
*
2452652 TATATATATATATATATA-TATA-TA-TTTC-TTTAATATTCTACTTATAAGT-CTAT
1 TATATATATATATATATATTAAATTATTTTCATTT-AT-TTCTAC-TATAAGTACTAT
2452705 TAT-TACTATATATAT
1 TATATA-TATATATAT
2452720 TGTAATTATC
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
51 3 0.05
52 8 0.13
53 23 0.38
54 8 0.13
55 18 0.30
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.55
Consensus pattern (55 bp):
TATATATATATATATATATTAAATTATTTTCATTTATTTCTACTATAAGTACTAT
Found at i:2453153 original size:4 final size:4
Alignment explanation
Indices: 2453140--2453171 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
2453130 ATTTTTTTTC
2453140 TTTA TCTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTT
2453172 TTCCCTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:2453750 original size:11 final size:11
Alignment explanation
Indices: 2453734--2453758 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
2453724 TTATTAAATT
2453734 AAAAAATTAAA
1 AAAAAATTAAA
2453745 AAAAAATTAAA
1 AAAAAATTAAA
2453756 AAA
1 AAA
2453759 TAAAATACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAATTAAA
Found at i:2454729 original size:2 final size:2
Alignment explanation
Indices: 2454722--2454747 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2454712 TTCGAACATC
2454722 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2454748 GAATATCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2474006 original size:29 final size:30
Alignment explanation
Indices: 2473974--2474030 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
2473964 CAAAAATAAA
**
2473974 GGACCAAAATAGCATTA-ATAGAAACTTGG
1 GGACCAAAATAGCAAAATATAGAAACTTGG
2474003 GGACCAAAATAGCAAAATATAGAAACTT
1 GGACCAAAATAGCAAAATATAGAAACTT
2474031 AAGGAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
GGACCAAAATAGCAAAATATAGAAACTTGG
Found at i:2474183 original size:30 final size:29
Alignment explanation
Indices: 2474057--2474172 Score: 142
Period size: 30 Copynumber: 3.9 Consensus size: 29
2474047 GAATTCATAC
* *
2474057 ATTTAAAGGATTAAAATAGATAAAATAGAA
1 ATTTAAAGGACTAAAATA-AAAAAATAGAA
* * *
2474087 ATTTAAAGGACTAAAATAATAATATAGAC
1 ATTTAAAGGACTAAAATAAAAAAATAGAA
2474116 ATTTAAAGGACTAAAATAACAAAAATAGAA
1 ATTTAAAGGACTAAAATAA-AAAAATAGAA
* *
2474146 AGTTAAAGGAATAAAATAGAAAAAATA
1 ATTTAAAGGACTAAAATA-AAAAAATA
2474173 TAAACCTAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
29 28 0.37
30 47 0.62
31 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.12, T:0.23
Consensus pattern (29 bp):
ATTTAAAGGACTAAAATAAAAAAATAGAA
Found at i:2475797 original size:3 final size:3
Alignment explanation
Indices: 2475789--2475832 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
2475779 GTAAATTAAT
*
2475789 TAA TAA TAA TAA TAA TAA -AA T-A TAA TAA TAA TGA TAA -AA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2475833 TTTTGTGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 6 0.17
3 30 0.83
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:2475815 original size:19 final size:19
Alignment explanation
Indices: 2475791--2475829 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
2475781 AAATTAATTA
2475791 ATAATAATAATAATAAAAT
1 ATAATAATAATAATAAAAT
*
2475810 ATAATAATAATGATAAAAT
1 ATAATAATAATAATAAAAT
2475829 A
1 A
2475830 ATATTTTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAATAATAATAATAAAAT
Found at i:2475817 original size:22 final size:22
Alignment explanation
Indices: 2475780--2475833 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
2475770 TATAAAATTG
*
2475780 TAAATTAAT-TAATAATAATAA
1 TAAAATAATATAATAATAATAA
*
2475801 TAATAA-AATATAATAATAATGA
1 TAA-AATAATATAATAATAATAA
2475823 TAAAATAATAT
1 TAAAATAATAT
2475834 TTTGTGACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 8 0.29
22 20 0.71
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
TAAAATAATATAATAATAATAA
Found at i:2476272 original size:130 final size:130
Alignment explanation
Indices: 2476133--2476479 Score: 520
Period size: 130 Copynumber: 2.7 Consensus size: 130
2476123 GGTTCCTATG
*
2476133 TGATGAGGACGGCTGGGTATCTGTTGGTGACACGGCTCCTGCATATGAGGAGGTTTGGTCAGGGG
1 TGATGAGGACGGCTGGGTATCTGTTGGTGACACGGCTCCTGCATATGAGGAGGTTTGGTTAGGGG
2476198 ATGACACGGTTCCTACGCGATGATGATGACATGCTATCTTCAAGGATGATAACACGATTCCTACA
66 ATGACACGGTTCCTACGCGATGATGATGACATGCTATCTTCAAGGATGATAACACGATTCCTACA
2476263 TGATGAGGACGGCTGGGTATCTGTTGGTGACACGGCTCCTGCATATGAGGAGGTTTGGTTAGGGG
1 TGATGAGGACGGCTGGGTATCTGTTGGTGACACGGCTCCTGCATATGAGGAGGTTTGGTTAGGGG
* *
2476328 ATGACATGGTTCCTACGCGATGATGATGACATGCTATCTTCAAGGATGATAACACGGTTCCTACA
66 ATGACACGGTTCCTACGCGATGATGATGACATGCTATCTTCAAGGATGATAACACGATTCCTACA
* * * * * * * * * *
2476393 TGATGAGGA-GGCAGGTTATCAG-GGGTGACTCGACTCTTACGTTATGAGGA-GTTCTGGTTGGG
1 TGATGAGGACGGCTGGGTATCTGTTGGTGACACGGCTCCTGC-ATATGAGGAGGTT-TGGTTAGG
* *
2476455 GGATGACACAGTTCCTACGTGATGA
64 GGATGACACGGTTCCTACGCGATGA
2476480 GGACGGCAAG
Statistics
Matches: 199, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
128 16 0.08
129 47 0.24
130 136 0.68
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (130 bp):
TGATGAGGACGGCTGGGTATCTGTTGGTGACACGGCTCCTGCATATGAGGAGGTTTGGTTAGGGG
ATGACACGGTTCCTACGCGATGATGATGACATGCTATCTTCAAGGATGATAACACGATTCCTACA
Found at i:2482556 original size:30 final size:30
Alignment explanation
Indices: 2482486--2482595 Score: 116
Period size: 30 Copynumber: 3.7 Consensus size: 30
2482476 GCAGATATTG
* *
2482486 AAAGGATT-AAATAG-ATAAAATATAAACTT
1 AAAGGATTAAAATAGTA-AAAATAGAAAGTT
* * * *
2482515 AAGGGATTAAAATAGTAAATATAGACATTT
1 AAAGGATTAAAATAGTAAAAATAGAAAGTT
* *
2482545 AAAGGACTAAAATAATAAAAATAGAAAGTT
1 AAAGGATTAAAATAGTAAAAATAGAAAGTT
*
2482575 AAAGGATTAAAATAGCAAAAA
1 AAAGGATTAAAATAGTAAAAA
2482596 GAAAATCTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
29 7 0.11
30 57 0.88
31 1 0.02
ACGTcount: A:0.59, C:0.04, G:0.14, T:0.24
Consensus pattern (30 bp):
AAAGGATTAAAATAGTAAAAATAGAAAGTT
Found at i:2482587 original size:60 final size:59
Alignment explanation
Indices: 2482443--2482593 Score: 162
Period size: 59 Copynumber: 2.5 Consensus size: 59
2482433 AATAGTAAAA
* * * * *
2482443 AAAATATAAACTT-AAGTAGTTAAAATAGCAAATGCAGATATTGAAAGGATTAAATAGAT
1 AAAATAGAAACTTAAAGGA-TTAAAATAGCAAATACAGACATTGAAAGGATAAAATAGAT
* * * * *
2482502 AAAATATAAACTTAAGGGATTAAAATAGTAAATATAGACATTTAAAGGACTAAAATA-AT
1 AAAATAGAAACTTAAAGGATTAAAATAGCAAATACAGACATTGAAAGGA-TAAAATAGAT
*
2482561 AAAAATAGAAAGTTAAAGGATTAAAATAGCAAA
1 -AAAATAGAAACTTAAAGGATTAAAATAGCAAA
2482594 AAGAAAATCT
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
59 40 0.52
60 37 0.48
ACGTcount: A:0.56, C:0.05, G:0.14, T:0.25
Consensus pattern (59 bp):
AAAATAGAAACTTAAAGGATTAAAATAGCAAATACAGACATTGAAAGGATAAAATAGAT
Found at i:2483575 original size:3 final size:3
Alignment explanation
Indices: 2483567--2483608 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
2483557 GTAAATTAAT
* *
2483567 TAA TAA TAA TAA TAA AAA T-A TAA TAA TAA TGA TAA -AA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2483609 TTTTTGCGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:2483606 original size:17 final size:16
Alignment explanation
Indices: 2483568--2483608 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
2483558 TAAATTAATT
2483568 AATAATAATAATAAAA
1 AATAATAATAATAAAA
*
2483584 ATATAATAATAATGATAA
1 A-ATAATAATAAT-AAAA
2483602 AATAATA
1 AATAATA
2483609 TTTTTGCGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 17 0.77
18 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
AATAATAATAATAAAA
Found at i:2495615 original size:81 final size:81
Alignment explanation
Indices: 2495487--2496369 Score: 1029
Period size: 81 Copynumber: 10.9 Consensus size: 81
2495477 TAGCCAAAGG
* * * * * * * * *
2495487 TATTTAGCCTTTCATCTAACTTGCATAATTAACACTTTTCTGTCAAATGCATAGCTAGGCCATAA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
2495552 ATCTTTTACTCAACGA
66 ATCTTTTACTCAACGA
* * *
2495568 TATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCAGCCAAATGCACAACTTGGCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
2495633 ATCTTTTACTCAACGA
66 ATCTTTTACTCAACGA
* * * * * **
2495649 TATTTAATCGTTCATCTAACTGGAATAATTGACACATTTCTTCCAAATGCACAGCTAATCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
*
2495714 ATCTTTTACTCAACAA
66 ATCTTTTACTCAACGA
** * ** * *
2495730 TATTTAATTGTTCATCTAACT-GTATAATTGACACCTTTCTATCAAATGAACAGCTAGGCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
* *
2495794 ATATTTTACTCAACGG
66 ATCTTTTACTCAACGA
* * * *
2495810 TATTTAACTGTTCATATAACTGGCATAATTGACACATTTCTGCCAAACGCACAACTAGGCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
* *
2495875 ATCTTTTATTCAACTA
66 ATCTTTTACTCAACGA
* * *
2495891 TATTTAACAGTTCATCTAACTGGCATAATTAACACCTTTCT-CGCAAATGGA-AAGCTAGGCCAT
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC-CAAATGCACAA-CTAGGCCAT
* *
2495954 TAATCATTTACTCAACGG
64 TAATCTTTTACTCAACGA
* * ** * * ** *
2495972 TATTTAACCATTCATATAACT-ATATAGTTAACACCTTTAAGCCAAATGCACAACAAGGCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
2496036 ATCTTTTACTCAACGA
66 ATCTTTTACTCAACGA
* * *
2496052 TATTTAATCGTTCATCTAACTGGCATAATTGGCACCTTTCTGCCAAATGCACAACAAGGCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
2496117 ATCTTTTACTCAACGA
66 ATCTTTTACTCAACGA
* * * * *
2496133 TATTTAACCGTTCATCTAACTGGCATAATTGACAGCTTTCTACTAATTGCACAACTAGTCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
* *
2496198 ATCTTTTACTCAATGG
66 ATCTTTTACTCAACGA
* ** * *
2496214 TATTTAACCGTTCATCTAACTCGCATAATTGACATATCTCTGCCAAATGCACACCTAGGCCATTA
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
* *
2496279 ATCTTATACTAAACGA
66 ATCTTTTACTCAACGA
** * ** * * **
2496295 TATTTAATTGTTCATCTAACTGGCATAATTAACATATTTCT-CCTAAATGTAGAGTTAGGCCATT
1 TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCC-AAATGCACAACTAGGCCATT
2496359 AATCTTTTACT
65 AATCTTTTACT
2496370 TTTGGAATAG
Statistics
Matches: 684, Mismatches: 111, Indels: 14
0.85 0.14 0.02
Matches are distributed among these distances:
80 136 0.20
81 548 0.80
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (81 bp):
TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTA
ATCTTTTACTCAACGA
Found at i:2495956 original size:242 final size:240
Alignment explanation
Indices: 2495485--2496369 Score: 1058
Period size: 242 Copynumber: 3.7 Consensus size: 240
2495475 TTTAGCCAAA
* * * ** *
2495485 GGTATTTAGCCTTTCATCTAACTTGCATAATTAACACTTTTCTGTCAAATGCATAGCTAGGCCAT
1 GGTATTTAACCGTTCATCTAAC-TGCATAATTAACACCTTTCTACCAAATGCACAGCTAGGCCAT
* ** * *
2495550 AAATCTTTTACTCAACGATATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCAGCCAAA
65 TAATCTTTTACTCAACGATATTTAACTGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAA
* *
2495615 TGCACAACTTGGCCATTAATCTTTTACTCAACGATATTTAATCGTTCATCTAACTGGAATAATTG
130 TGCACAACTAGGCCATTAATCTTTTACTCAACGATATTTAA-CGTTCATCTAACTGGCATAATTG
* * *
2495680 ACACATTTCTTCCAAATGCACAGCTAATCCATTAATCTTTTACTCAAC
194 ACACCTTTC-TCCAAATGCAAAGCTAGTCCATTAATCTTTTACTCAAC
** ** * * * *
2495728 AATATTTAATTGTTCATCTAACTGTATAATTGACACCTTTCTATCAAATGAACAGCTAGGCCATT
1 GGTATTTAACCGTTCATCTAACTGCATAATTAACACCTTTCTACCAAATGCACAGCTAGGCCATT
* * * *
2495793 AATATTTTACTCAACGGTATTTAACTGTTCATATAACTGGCATAATTGACACATTTCTGCCAAAC
66 AATCTTTTACTCAACGATATTTAACTGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAAT
* * *
2495858 GCACAACTAGGCCATTAATCTTTTATTCAACTATATTTAACAGTTCATCTAACTGGCATAATTAA
131 GCACAACTAGGCCATTAATCTTTTACTCAACGATATTTAAC-GTTCATCTAACTGGCATAATTGA
* * *
2495923 CACCTTTCTCGCAAATGGAAAGCTAGGCCATTAATCATTTACTCAAC
195 CACCTTTCTC-CAAATGCAAAGCTAGTCCATTAATCTTTTACTCAAC
* * ** * * * *
2495970 GGTATTTAACCATTCATATAACTATATAGTTAACACCTTT-AAGCCAAATGCACAACAAGGCCAT
1 GGTATTTAACCGTTCATCTAACTGCATAATTAACACCTTTCTA-CCAAATGCACAGCTAGGCCAT
* *
2496034 TAATCTTTTACTCAACGATATTTAA-TCGTTCATCTAACTGGCATAATTGGCACCTTTCTGCCAA
65 TAATCTTTTACTCAACGATATTTAACT-GTTCATCTAACTGGCATAATTGACACATTTCTGCCAA
*
2496098 ATGCACAACAAGGCCATTAATCTTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATT
129 ATGCACAACTAGGCCATTAATCTTTTACTCAACGATATTTAA-CGTTCATCTAACTGGCATAATT
* * * *
2496163 GACAGCTTTCTACTAATTGCACAA-CTAGTCCATTAATCTTTTACTCAAT
193 GACACCTTTCT-CCAAATGCA-AAGCTAGTCCATTAATCTTTTACTCAAC
* ** * * *
2496212 GGTATTTAACCGTTCATCTAACTCGCATAATTGACATATCTCTGCCAAATGCACACCTAGGCCAT
1 GGTATTTAACCGTTCATCTAACT-GCATAATTAACACCTTTCTACCAAATGCACAGCTAGGCCAT
* * * * *
2496277 TAATCTTATACTAAACGATATTTAATTGTTCATCTAACTGGCATAATTAACATATTTCT-CCTAA
65 TAATCTTTTACTCAACGATATTTAACTGTTCATCTAACTGGCATAATTGACACATTTCTGCC-AA
* * **
2496341 ATGTAGAGTTAGGCCATTAATCTTTTACT
129 ATGCACAACTAGGCCATTAATCTTTTACT
2496370 TTTGGAATAG
Statistics
Matches: 544, Mismatches: 87, Indels: 22
0.83 0.13 0.03
Matches are distributed among these distances:
241 5 0.01
242 412 0.76
243 126 0.23
244 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (240 bp):
GGTATTTAACCGTTCATCTAACTGCATAATTAACACCTTTCTACCAAATGCACAGCTAGGCCATT
AATCTTTTACTCAACGATATTTAACTGTTCATCTAACTGGCATAATTGACACATTTCTGCCAAAT
GCACAACTAGGCCATTAATCTTTTACTCAACGATATTTAACGTTCATCTAACTGGCATAATTGAC
ACCTTTCTCCAAATGCAAAGCTAGTCCATTAATCTTTTACTCAAC
Found at i:2496082 original size:323 final size:320
Alignment explanation
Indices: 2495472--2496333 Score: 979
Period size: 323 Copynumber: 2.7 Consensus size: 320
2495462 GTTCCTTTAT
* * * * *
2495472 TATTTTAGC-CAAAGGTATTTAGCCT-TTCATCTAACTTGCATAATTAACACTTTTCTGTCAAAT
1 TATTTTA-CTCAACGGTATTTA-ACTGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAAT
* * * *
2495535 GCATAGCTAGGCCATAAATCTTTTACTCAACGATATTTAACCA-TTCATCTAACTGGCATAATTG
63 GCACAACTAGGCCATTAATCTTTTACTCAACTATATTTAA-CAGTTCATCTAACTGGCATAATTG
* * * *
2495599 ACACCTTTC-AGCCAAATGCACAACTTGGCCATTAATCTTTTACTCAACGATATTTAATCGTTCA
127 ACACCTTTCTCGCCAAATGCA-AACTAGGCCATTAATC-TTTACTCAACGATATTTAACCATTCA
* * *** * *
2495663 TCTAACTGGAATAATTGACACATTTCTTCCAAATGCACAGCTAATCCATTAATCTTTTACTCAAC
190 TATAACT-GAATAATTAACACATTTAAGCCAAATGCACAACTAAGCCATTAATCTTTTACTCAAC
* * * * *
2495728 AATATTTAATTGTTCATCTAACTGTATAATTGACACCTTTCTATCAAATGAACAGCTAGGCCATT
254 AATATTTAATCGTTCATCTAACTGCATAATTGACACCTTTCTACCAAATGAACAACAAGGCCATT
2495793 AA
319 AA
* *
2495795 TATTTTACTCAACGGTATTTAACTGTTCATATAACTGGCATAATTGACACATTTCTGCCAAACGC
1 TATTTTACTCAACGGTATTTAACTGTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
2495860 ACAACTAGGCCATTAATCTTTTATTCAACTATATTTAACAGTTCATCTAACTGGCATAATTAACA
65 ACAACTAGGCCATTAATCTTTTACTCAACTATATTTAACAGTTCATCTAACTGGCATAATTGACA
* *
2495925 CCTTTCTCG-CAAATGGAAAGCTAGGCCATTAATCATTTACTCAACGGTATTTAACCATTCATAT
130 CCTTTCTCGCCAAATGCAAA-CTAGGCCATTAATC-TTTACTCAACGATATTTAACCATTCATAT
* * *
2495989 AACT-ATATAGTTAACACCTTTAAGCCAAATGCACAAC-AAGGCCATTAATCTTTTACTCAACGA
193 AACTGA-ATAATTAACACATTTAAGCCAAATGCACAACTAA-GCCATTAATCTTTTACTCAACAA
* * *
2496052 TATTTAATCGTTCATCTAACTGGCATAATTGGCACCTTTCTGCCAAATGCACAACAAGGCCATTA
256 TATTTAATCGTTCATCTAACT-GCATAATTGACACCTTTCTACCAAATGAACAACAAGGCCATTA
2496117 A
320 A
* * * * * *
2496118 TCTTTTACTCAACGATATTTAACCGTTCATCTAACTGGCATAATTGACAGCTTTCTACTAATTGC
1 TATTTTACTCAACGGTATTTAACTGTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* * * *
2496183 ACAACTAGTCCATTAATCTTTTACTCAA-TGGTATTTAACCGTTCATCTAACTCGCATAATTGAC
65 ACAACTAGGCCATTAATCTTTTACTCAACT-ATATTTAACAGTTCATCTAACTGGCATAATTGAC
* * * ***
2496247 A--TATCTCTGCCAAATGCACACCTAGGCCATTAATCTTATACTAAACGATATTTAATTGTTCAT
129 ACCTTTCTC-GCCAAATGCA-AACTAGGCCATTAATCTT-TACTCAACGATATTTAACCATTCAT
* * *
2496310 CTAACTGGCATAATTAACATATTT
191 ATAACT-GAATAATTAACACATTT
2496334 CTCCTAAATG
Statistics
Matches: 457, Mismatches: 66, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
321 8 0.02
322 76 0.17
323 358 0.78
324 15 0.03
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.34
Consensus pattern (320 bp):
TATTTTACTCAACGGTATTTAACTGTTCATCTAACTGGCATAATTGACACTTTCTGCCAAATGCA
CAACTAGGCCATTAATCTTTTACTCAACTATATTTAACAGTTCATCTAACTGGCATAATTGACAC
CTTTCTCGCCAAATGCAAACTAGGCCATTAATCTTTACTCAACGATATTTAACCATTCATATAAC
TGAATAATTAACACATTTAAGCCAAATGCACAACTAAGCCATTAATCTTTTACTCAACAATATTT
AATCGTTCATCTAACTGCATAATTGACACCTTTCTACCAAATGAACAACAAGGCCATTAA
Found at i:2496674 original size:57 final size:57
Alignment explanation
Indices: 2496529--2496662 Score: 189
Period size: 57 Copynumber: 2.4 Consensus size: 57
2496519 AAATTCATAT
* ** ** *
2496529 AATTTCTT-AGTTTTTGCACACAAAGTTCCCATATGGAAATTTGTAAACTAATTGTG
1 AATTTCTTAACTTTTTGCACACAAAGTGGCCATATGGAAATTCATAAACTAATTATG
*
2496585 AATTTCTTAACTTTTTTCACACAAAGTGGCCATATGGAAATTCATAAACTAATTATG
1 AATTTCTTAACTTTTTGCACACAAAGTGGCCATATGGAAATTCATAAACTAATTATG
*
2496642 AATTTTTTAACTTTTTGCACA
1 AATTTCTTAACTTTTTGCACA
2496663 TTTAATGGCC
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
56 8 0.12
57 60 0.88
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (57 bp):
AATTTCTTAACTTTTTGCACACAAAGTGGCCATATGGAAATTCATAAACTAATTATG
Found at i:2500818 original size:46 final size:46
Alignment explanation
Indices: 2500640--2500811 Score: 251
Period size: 46 Copynumber: 3.8 Consensus size: 46
2500630 GATAAAATGG
* *
2500640 AAAATAAGCTTACGAGCTTATGGAA-T-AATGGCAAGTATATAGGT
1 AAAATAAGCTTACGAGCTTATGGAATTAAATGGTAAGTATATTGGT
* *
2500684 AAAATAAGCTTTCGAGCTTATGGTATTAAATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGAATTAAATGGTAAGTATATTGGT
* *
2500730 AAAATAAGCTTACGAGCTTATGGAATTAAATGGTATGTATTTTGGT
1 AAAATAAGCTTACGAGCTTATGGAATTAAATGGTAAGTATATTGGT
* *
2500776 AAAATAAACTTACGAGCTTATGGGA-TAAATGGTAAG
1 AAAATAAGCTTACGAGCTTATGGAATTAAATGGTAAG
2500812 AGATTTTATA
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
44 23 0.20
45 11 0.10
46 81 0.70
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (46 bp):
AAAATAAGCTTACGAGCTTATGGAATTAAATGGTAAGTATATTGGT
Found at i:2504260 original size:81 final size:81
Alignment explanation
Indices: 2504154--2505174 Score: 956
Period size: 81 Copynumber: 12.9 Consensus size: 81
2504144 CCCCAAATGC
* * * * * *
2504154 ATTTAACCATTCATCTAACTTGCATATTTGACAATTTTCTGTCAAATACACAGCTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
2504219 TCTTTTACTCAACGAT
66 TCTTTTACTCAACGAT
* * * * *
2504235 ATTTAATCATTCATCTAACTGGCATAATTGACACCTCTCTACCAAATGCACACCTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
*
2504300 TCTTTTACTCAGCTG-T
66 TCTTTTACTCAAC-GAT
* * * *
2504316 ATTTAACCGTTCATCTAACTGGCATAATTCAC-ACCTT-T--CAAATGCACAACTAGACCATT-A
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
* *
2504376 TCTTATACTGAACGAT
66 TCTTTTACTCAACGAT
* * *
2504392 ATTTAACCATTCATATAACTGGTATAATTGACAAC-TTCTACCAAATGCACAACTAGG-CATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
*
2504455 TCTTTTACTCAACGGT
66 TCTTTTACTCAACGAT
* * * **
2504471 A-TTACCCGA-TCATCTAACTGGCATAATTGACACCTTTCTTCCAAATGCACAGTTAGGCCATTA
1 ATTTAACC-ATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTA
*
2504534 ATCTTTTACTCAAAGAT
65 ATCTTTTACTCAACGAT
* * * * *
2504551 ATTTAATCATCCATCTAACT-GCATAATTGATACCATTCTGCCAAATGCA-AACTAGGCCATT-A
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
2504613 ---TTTACTCAAC-AGT
66 TCTTTTACTCAACGA-T
* * * ** * * * * * *
2504626 ATTTAAACGTTCATATAACTTACATAATTGACACCTTTATGCCAAATGCATAATTCGGTCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
* *
2504691 TCTTTTACTCAATGGT
66 TCTTTTACTCAACGAT
* * * * * * *
2504707 ATTTAACCGTTCATCTAACT--CATGACTGACACCTTT-TGCCAAATGTACATCTAGTCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
*
2504769 T-ATTTACTC-A--AT
66 TCTTTTACTCAACGAT
*** * * *
2504781 A-TTAATTGTTCA--TAACTGGTATAATTGA-AACATTTCTGCCAAATACACATCTAGGCCATTA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAAC-TTTCTGCCAAATGCACAACTAGGCCATTA
*
2504842 ATCTTTTACTCAACAAT
65 ATCTTTTACTCAACGAT
* * * * *
2504859 ATTTAA-CAGTTCATCTAACTGGTATAATTGACACCTTTCTGCCAAATGCACAGCAAGGCCATTT
1 ATTTAACCA-TTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTA
*
2504923 ATCTTTTACTCAACGGT
65 ATCTTTTACTCAACGAT
* * * *
2504940 ATTTAA-CAGTTCATCTAGCTGTCATAATTGACATCTTTCTGCCAAAATGTACAACTAGGCCATT
1 ATTTAACCA-TTCATCTAACTGGCATAATTGACAACTTTCTGCC-AAATGCACAACTAGGCCATT
* *
2505004 AATCTTTCACTCAATG-T
64 AATCTTTTACTCAACGAT
* * *** * * *
2505021 ATTTAACCGTTCATCTAACTGGAATAATCT-ATGCCTTTCTACCAAATGCATAAACTAGGTCATT
1 ATTTAACCATTCATCTAACTGGCATAAT-TGACAACTTTCTGCCAAATGCA-CAACTAGGCCATT
*
2505085 AATCTTTTACTCAATGAT
64 AATCTTTTACTCAACGAT
* * *
2505103 ATTTAACCGTTCATCTGACTGGCATAATTGAC-ACATTTCTGCCAAATGCACAGCTAGGCCATTA
1 ATTTAACCATTCATCTAACTGGCATAATTGACAAC-TTTCTGCCAAATGCACAACTAGGCCATTA
2505167 ATCTTTTA
65 ATCTTTTA
2505175 ATTTGTTATA
Statistics
Matches: 777, Mismatches: 123, Indels: 80
0.79 0.13 0.08
Matches are distributed among these distances:
71 5 0.01
72 2 0.00
73 18 0.02
74 27 0.03
75 34 0.04
76 69 0.09
77 38 0.05
78 56 0.07
79 83 0.11
80 56 0.07
81 312 0.40
82 77 0.10
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (81 bp):
ATTTAACCATTCATCTAACTGGCATAATTGACAACTTTCTGCCAAATGCACAACTAGGCCATTAA
TCTTTTACTCAACGAT
Found at i:2504888 original size:233 final size:234
Alignment explanation
Indices: 2504154--2505174 Score: 878
Period size: 235 Copynumber: 4.3 Consensus size: 234
2504144 CCCCAAATGC
* * * ** * * * *
2504154 ATTTAACCA-TTCATCTAACTTGCATATTTGACAATTTTCTGTCAAATACACAGCTAGGCCATTA
1 ATTTAA-CAGTTCATATAACTGGCATAATTGACACCTTTATGCCAAATGCACAACTAGG-CATTA
* * * * *
2504218 ATCTTTTACTCAACGATATTTAATCATTCATCTAACTGGCATAATTGACACCTCTCTACCAAATG
64 ATCTTTTACTCAACGGTATTTAACCGTTCATCTAACT--CATAATTGACACCTTTCTGCCAAATG
* * * * * * * *
2504283 CACACCTAGGCCATTAATCTTTTACTCAGCTGTATTTAACCGTTCATCTAACTGGCATAATTCAC
127 TACATCTAGGCCATTAAT-ATTTACTCA---ATATTTAATCGTTCA-CTAACTGGAATAATTGAA
* * * * *
2504348 AC-CTT-T--CAAATGCACAACTAGACCATTATCTTATACTGAACGAT
187 ACATTTCTGCCAAATGCACAACTAGGCCATTATCTTTTACTCAACAAT
* *
2504392 ATTTAACCA-TTCATATAACTGGTATAATTGACAACTTCTA--CCAAATGCACAACTAGGCATTA
1 ATTTAA-CAGTTCATATAACTGGCATAATTGACACCTT-TATGCCAAATGCACAACTAGGCATTA
* * *
2504454 ATCTTTTACTCAACGGTA-TTACCCGATCATCTAACTGGCATAATTGACACCTTTCTTCCAAATG
64 ATCTTTTACTCAACGGTATTTAACCGTTCATCTAACT--CATAATTGACACCTTTCTGCCAAATG
* * * * *
2504518 CACAGT-TAGGCCATTAATCTTTTACTCAAAGATATTTAATCATCCATCTAACT-GCATAATTGA
127 TACA-TCTAGGCCATTAAT-ATTTACTC--A-ATATTTAATCGTTCA-CTAACTGGAATAATTGA
* *
2504581 TACCA-TTCTGCCAAATGCA-AACTAGGCCATTA---TTTACTCAACAGT
186 -AACATTTCTGCCAAATGCACAACTAGGCCATTATCTTTTACTCAACAAT
** * * *
2504626 ATTTAA-ACGTTCATATAACTTACATAATTGACACCTTTATGCCAAATGCATAATTCGGTCATTA
1 ATTTAACA-GTTCATATAACTGGCATAATTGACACCTTTATGCCAAATGCACAACTAGG-CATTA
* * *
2504690 ATCTTTTACTCAATGGTATTTAACCGTTCATCTAACTCATGACTGACACCTTT-TGCCAAATGTA
64 ATCTTTTACTCAACGGTATTTAACCGTTCATCTAACTCATAATTGACACCTTTCTGCCAAATGTA
* * *
2504754 CATCTAGTCCATTAATATTTACTCAATA-TTAATTGTTCA-TAACTGGTATAATTGAAACATTTC
129 CATCTAGGCCATTAATATTTACTCAATATTTAATCGTTCACTAACTGGAATAATTGAAACATTTC
* *
2504817 TGCCAAATACACATCTAGGCCATTAATCTTTTACTCAACAAT
194 TGCCAAATGCACAACTAGGCCATT-ATCTTTTACTCAACAAT
* * * * * *
2504859 ATTTAACAGTTCATCTAACTGGTATAATTGACACCTTTCTGCCAAATGCACAGCAAGGCCATTTA
1 ATTTAACAGTTCATATAACTGGCATAATTGACACCTTTATGCCAAATGCACAACTAGG-CATTAA
* * *
2504924 TCTTTTACTCAACGGTATTTAACAGTTCATCTAGCTGTCATAATTGACATCTTTCTGCCAAAATG
65 TCTTTTACTCAACGGTATTTAACCGTTCATCTAAC--TCATAATTGACACCTTTCTGCC-AAATG
* * * *
2504989 TACAACTAGGCCATTAATCTTTCACTCAATGTATTTAACCGTTCATCTAACTGGAATAATCT-AT
127 TACATCTAGGCCATTAATATTT-ACTCAA--TATTTAATCGTTCA-CTAACTGGAATAAT-TGAA
* * * * * **
2505053 GCCTTTCTACCAAATGCATAAACTAGGTCATTAATCTTTTACTCAATGAT
187 ACATTTCTGCCAAATGCA-CAACTAGGCCATT-ATCTTTTACTCAACAAT
* * * * * *
2505103 ATTTAACCGTTCATCTGACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
1 ATTTAACAGTTCATATAACTGGCATAATTGACACCTTTATGCCAAATGCACAACTAGG-CATTAA
2505168 TCTTTTA
65 TCTTTTA
2505175 ATTTGTTATA
Statistics
Matches: 653, Mismatches: 94, Indels: 66
0.80 0.12 0.08
Matches are distributed among these distances:
227 8 0.01
228 22 0.03
229 19 0.03
230 4 0.01
231 1 0.00
232 1 0.00
233 105 0.16
234 71 0.11
235 128 0.20
236 49 0.08
237 67 0.10
238 46 0.07
239 1 0.00
240 2 0.00
241 9 0.01
243 27 0.04
244 93 0.14
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (234 bp):
ATTTAACAGTTCATATAACTGGCATAATTGACACCTTTATGCCAAATGCACAACTAGGCATTAAT
CTTTTACTCAACGGTATTTAACCGTTCATCTAACTCATAATTGACACCTTTCTGCCAAATGTACA
TCTAGGCCATTAATATTTACTCAATATTTAATCGTTCACTAACTGGAATAATTGAAACATTTCTG
CCAAATGCACAACTAGGCCATTATCTTTTACTCAACAAT
Found at i:2508758 original size:203 final size:201
Alignment explanation
Indices: 2508381--2508785 Score: 749
Period size: 203 Copynumber: 2.0 Consensus size: 201
2508371 TAAATTTAGG
2508381 AACTTTAACAACATCTCTCGTTTGAACTGTTCACCACATCATGTTCTTGAATTCTTTCAGGAAGA
1 AACTTTAACAACATCTCTCGTTTGAACTGTTCACCACATCATGTTCTTGAATTCTTTCAGGAAGA
*
2508446 ATTGCCAGGTCACTTGCTTTGATGTTGCATACATTATAGTATTGACCACCAATATTGAGTTGATC
66 ATTGCCAGGTCACTTGCTTTGATGGTGCATACATTATAGTATTGACCACCAATATTGAGTTGATC
*
2508511 CTCTAAGTAAAGATACAGATCCATCCAACTTTGATGTGCAGGCGCACTAGCA-TTTCATATGGGA
131 CTCTAAGTAAAGATACAGATCCATCCAACTTTGATGTGCAGGCGCACTAGCATTTTCAGATGGGA
2508575 TTGGCT
196 TTGGCT
2508581 AACTTTAACAACATCTCTCGTTTGAACTGTTCACCCACATACATGTTCTTGAATTCTTTCAGGAA
1 AACTTTAACAACATCTCTCGTTTGAACTGTTCA-CCACAT-CATGTTCTTGAATTCTTTCAGGAA
*
2508646 GAATTGCCAGGTCACTTGCTTTGATGGTGCATACATTATAGTATTTGACCACGAATATTGAGTTG
64 GAATTGCCAGGTCACTTGCTTTGATGGTGCATACATTATAGTA-TTGACCACCAATATTGAGTTG
2508711 ATCCTCTAAGTAAAGATACAGATCCATCCAACTTTGATGTGCAGGCGCACTAGCATTTTCAGATG
128 ATCCTCTAAGTAAAGATACAGATCCATCCAACTTTGATGTGCAGGCGCACTAGCATTTTCAGATG
2508776 GGATTGGCT
193 GGATTGGCT
2508785 A
1 A
2508786 CTCACTATTA
Statistics
Matches: 198, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
200 33 0.17
201 6 0.03
202 66 0.33
203 75 0.38
204 18 0.09
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (201 bp):
AACTTTAACAACATCTCTCGTTTGAACTGTTCACCACATCATGTTCTTGAATTCTTTCAGGAAGA
ATTGCCAGGTCACTTGCTTTGATGGTGCATACATTATAGTATTGACCACCAATATTGAGTTGATC
CTCTAAGTAAAGATACAGATCCATCCAACTTTGATGTGCAGGCGCACTAGCATTTTCAGATGGGA
TTGGCT
Found at i:2509494 original size:81 final size:81
Alignment explanation
Indices: 2509162--2510042 Score: 930
Period size: 81 Copynumber: 10.9 Consensus size: 81
2509152 ACCGAAAGAC
* * * * * * *
2509162 ATTTAGCCTTTCATCTAACTTGCTTAATTGACACTTTTCTGTCAAATGCAGAGCTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
* * *
2509227 TCATTTACTCAATGAT
66 TCTTTTACTCAAAGGT
* * * * *
2509243 ATCTAACCATTCATCCAACTGGCATAATT-ACACATTTCTACCAAATGCACATCTA-GCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
* *
2509306 TATTTTACTCAACGGT
66 TCTTTTACTCAAAGGT
* * * *
2509322 ATTTAATCATTCATCTAACT-GCATTATTGACACCTTTC-GACCAAATGCAAAGCTAGGACATTA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTG-CCAAATGCACAGCTAGGCCATTA
* *
2509385 ATATTTTACTCAACGGT
65 ATCTTTTACTCAAAGGT
* * * * * * * *
2509402 ACTTAATCATTCATTTAACTGGCATAATTGGCACTTTTATGTCAAATGCACAGCTAGGCTATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
2509467 TCTTTTACTCAAAGGT
66 TCTTTTACTCAAAGGT
* * * * * *
2509483 ATTTAACCATTCATCTAACTTGAATAATTGACACATTTCTTCCAAATGAACTGCTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
*
2509548 TCATTTACTCAACA-GT
66 TCTTTTACTCAA-AGGT
* * *
2509564 ATTTAACCATTCATCTAACTGGCATAATTGAAACCTTTCTACCAAATGCACAACTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
* * *
2509629 TATTTTACTCAATGGA
66 TCTTTTACTCAAAGGT
** ** * *
2509645 ATTTAACTGTTCATCTAACTACCATAATTGACACCTTTCTACCAAATACACAGCTAGGCCATTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
*
2509710 TATTTTACTCAACA-GT
66 TCTTTTACTCAA-AGGT
* * * * *
2509726 ATTTAACCGTTCATCTAACTGGCATAAATGATACCTTTCTGCCAAATGCACAACTAGGCCATTAT
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
*
2509791 TCTTTTGCTCAACA-GT
66 TCTTTTACTCAA-AGGT
* * * * * *
2509807 ATTTAACCGTTCATCTAACTGGTATAAATGACACCTTTCTGCTAAATGCACAACTAGGCCATTAT
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
* **
2509872 TCTTTTGCTCAATTGT
66 TCTTTTACTCAAAGGT
** * * * * *
2509888 ATTTAACTGTTCATCTAACTGGCATAATTGACACATTTTTTCCAAATGCACAGCTAGGGCACTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
* * *
2509953 TTTTTTACTCAACGAT
66 TCTTTTACTCAAAGGT
* * * * * * *
2509969 ATTTAACCGTTCATCTAACTGGCATAATTGACATCTTTCAGTCAAATGCAGATCTAGGCCAGTAA
1 ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
2510034 TCTTTTACT
66 TCTTTTACT
2510043 TTTGGAATAG
Statistics
Matches: 677, Mismatches: 114, Indels: 18
0.84 0.14 0.02
Matches are distributed among these distances:
78 7 0.01
79 58 0.09
80 62 0.09
81 548 0.81
82 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (81 bp):
ATTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAA
TCTTTTACTCAAAGGT
Found at i:2510280 original size:56 final size:56
Alignment explanation
Indices: 2510204--2510337 Score: 187
Period size: 56 Copynumber: 2.4 Consensus size: 56
2510194 AAATTGATAT
*
2510204 AATTTCTTAGTTTTTGCACACAAAGTACCCATATGGAAATTCATAAACTAATTATG
1 AATTTCCTAGTTTTTGCACACAAAGTACCCATATGGAAATTCATAAACTAATTATG
* * * * *
2510260 AATTTCCTATTTTTTTCACACAAAGTTCCCATTTGGAAATTCATAAACTAATTCTG
1 AATTTCCTAGTTTTTGCACACAAAGTACCCATATGGAAATTCATAAACTAATTATG
* *
2510316 AATTTCTTTACTTTTTGCACAC
1 AATTTC-CTAGTTTTTGCACAC
2510338 TTAGTGCCCA
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
56 56 0.82
57 12 0.18
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (56 bp):
AATTTCCTAGTTTTTGCACACAAAGTACCCATATGGAAATTCATAAACTAATTATG
Found at i:2516957 original size:85 final size:83
Alignment explanation
Indices: 2516858--2517033 Score: 214
Period size: 85 Copynumber: 2.1 Consensus size: 83
2516848 ATTAAATCAC
* * * *
2516858 GACACAAGAATGTGTGTCATCTT-TTTTAATGACATGTGCTTCAATGACACGTAATGTAAG-TCA
1 GACACAAGAATGTGTGTCATCTTCATTT-ATGACAGGGGCTTCAATGACACGCAATG--AGCTCA
* *
2516921 TACATGCGTGTCATAAATTTAT
63 TAAATG-GCGTCATAAATTTAT
2516943 GACACATA-AATGTGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGAGCTTCAT
1 GACACA-AGAATGTGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGAGC-TCAT
*
2517007 AAATGGCGTCATAGATTTAT
64 AAATGGCGTCATAAATTTAT
2517027 GACACAA
1 GACACAA
2517034 TTGCGCATCA
Statistics
Matches: 80, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
83 3 0.04
84 19 0.24
85 54 0.68
86 4 0.05
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (83 bp):
GACACAAGAATGTGTGTCATCTTCATTTATGACAGGGGCTTCAATGACACGCAATGAGCTCATAA
ATGGCGTCATAAATTTAT
Found at i:2523428 original size:39 final size:39
Alignment explanation
Indices: 2523374--2523459 Score: 163
Period size: 39 Copynumber: 2.2 Consensus size: 39
2523364 ACAAGTACAT
2523374 GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
1 GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
*
2523413 GATTAACACTTAACCACCAATTGTAAAGTTTATTAAACA
1 GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
2523452 GATTAACA
1 GATTAACA
2523460 TATTACCCGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (39 bp):
GATTAACACTTAACCACCAATTGTAAAGTTTATCAAACA
Found at i:2526118 original size:61 final size:63
Alignment explanation
Indices: 2526042--2526165 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
2526032 GGTTTTCATT
*
2526042 CGATTTTGATAAAGATT-GTGACCGAG-TATAACTTGAGATTAAACATCAGATCGTCGTATGG
1 CGATTTCGATAAAGATTAGTGACCGAGTTATAACTTGAGATTAAACATCAGATCGTCGTATGG
2526103 CGATTTCGATAAAGATTAGTGACCGAGTTATAACTTGAGATTAAACATCAGATCGTCGTATGG
1 CGATTTCGATAAAGATTAGTGACCGAGTTATAACTTGAGATTAAACATCAGATCGTCGTATGG
2526166 GCCCAAAGTG
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 16 0.27
62 9 0.15
63 35 0.58
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (63 bp):
CGATTTCGATAAAGATTAGTGACCGAGTTATAACTTGAGATTAAACATCAGATCGTCGTATGG
Found at i:2532990 original size:155 final size:157
Alignment explanation
Indices: 2532711--2533009 Score: 534
Period size: 155 Copynumber: 1.9 Consensus size: 157
2532701 AATAAATAAC
*
2532711 AATAACTAACTAATAAGCATTTGCATATCTTTAGATGAGAGAGAACGGTGAGACATCAACTAGTG
1 AATAACTAACTAATAAGCATTTGCATATCATTAGAT-AGAGAGAACGGTGAGACATCAACTAGTG
2532776 AGAAGATAAACCTTACTTTAGTGTGTCAAACTATACTAGGGTATCGCATGTTATCATAGTTGTTA
65 AGAAGATAAACCTTACTTTAGTGTGTCAAACTATACTAGGGTATCGCATGTTATCATAGTTGTTA
2532841 AAGT-GGGCATTGTTTAATAAAAACAAT
130 AAGTGGGGCATTGTTTAATAAAAACAAT
2532868 AATAACTAACTAATAAGCATTTGCAT-TCATTAGAT-GAGAGAACGAGTGAGACATCAACTAGTG
1 AATAACTAACTAATAAGCATTTGCATATCATTAGATAGAGAGAACG-GTGAGACATCAACTAGTG
2532931 AGAAGAT-AACCTTACTTTAGTGTGTCAAACTATACTAGGGTATACGCATGTTATCATAGTTGTT
65 AGAAGATAAACCTTACTTTAGTGTGTCAAACTATACTAGGGTAT-CGCATGTTATCATAGTTGTT
2532995 AAAGTGGGGCATTGT
129 AAAGTGGGGCATTGT
2533010 CAGTACGTGA
Statistics
Matches: 138, Mismatches: 1, Indels: 7
0.95 0.01 0.05
Matches are distributed among these distances:
154 45 0.33
155 50 0.36
156 17 0.12
157 26 0.19
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (157 bp):
AATAACTAACTAATAAGCATTTGCATATCATTAGATAGAGAGAACGGTGAGACATCAACTAGTGA
GAAGATAAACCTTACTTTAGTGTGTCAAACTATACTAGGGTATCGCATGTTATCATAGTTGTTAA
AGTGGGGCATTGTTTAATAAAAACAAT
Found at i:2533415 original size:32 final size:31
Alignment explanation
Indices: 2533371--2533444 Score: 103
Period size: 32 Copynumber: 2.4 Consensus size: 31
2533361 CTAGTTAGAG
*
2533371 TGCATTTAGATAATGCATAATATGTTCAGGTT
1 TGCATTTAGATAATGCATAATACGTTCA-GTT
* *
2533403 TGTATTTAGATAATGCATAGTACGTTCAGTT
1 TGCATTTAGATAATGCATAATACGTTCAGTT
*
2533434 TGCATTCAGAT
1 TGCATTTAGAT
2533445 GTTGCACAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 12 0.32
32 25 0.68
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (31 bp):
TGCATTTAGATAATGCATAATACGTTCAGTT
Found at i:2533946 original size:19 final size:19
Alignment explanation
Indices: 2533922--2533960 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
2533912 ATTATATGTC
2533922 ACGGAGCTTCAATTTTGTA
1 ACGGAGCTTCAATTTTGTA
2533941 ACGGAGCTTCAATTTTGTA
1 ACGGAGCTTCAATTTTGTA
2533960 A
1 A
2533961 AATGTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (19 bp):
ACGGAGCTTCAATTTTGTA
Found at i:2537401 original size:81 final size:81
Alignment explanation
Indices: 2537247--2537556 Score: 345
Period size: 81 Copynumber: 3.8 Consensus size: 81
2537237 ACTATTCCAA
* * * *
2537247 GAGTAAAAGATTAAATGGCCTAGATCTGCATTTGGAAGAATGGTGTCAATTATGCTAGTTAGATG
1 GAGTAAAAGAAT-AATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATG
* *
2537312 AACAGTTAAATACCGGT
65 AACTGTTAAATACCGTT
* * * * * * *
2537329 GAGAAAAAGAATAATGGCCTAGCTGTGCATTTGGCAGAAAGATGTTAATTATGCCAATTAGATTA
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
2537394 ACTGTTAAATACCGTT
66 ACTGTTAAATACCGTT
* * * * *
2537410 GATTAAAAGATTAATGGCCTAGCTCTGCATTTGGAAGAAAGGTGTCAATTACGCCAGTTAGATGA
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
2537475 A-TGGTTAAATACCGTT
66 ACT-GTTAAATACCGTT
* * * * * * * *
2537491 AAGTAAAAGAATAATGTCCTAGATGTGCATTT-GACAAAAAAATGTCAATTATACAACTTAGATG
1 GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGA-AGAAAGATGTCAATTATGCCAGTTAGATG
2537555 AA
65 AA
2537557 AGGCTAAATG
Statistics
Matches: 190, Mismatches: 36, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
80 3 0.02
81 177 0.93
82 10 0.05
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (81 bp):
GAGTAAAAGAATAATGGCCTAGATCTGCATTTGGAAGAAAGATGTCAATTATGCCAGTTAGATGA
ACTGTTAAATACCGTT
Found at i:2537924 original size:22 final size:22
Alignment explanation
Indices: 2537899--2537968 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
2537889 CATTATCGGC
2537899 ATGAAAGGATGCCATAATTAAA
1 ATGAAAGGATGCCATAATTAAA
* * * **
2537921 ATGAATATGGGTG-CATTATCAGC
1 ATGAA-A-GGATGCCATAATTAAA
*
2537944 ATGAAAGGATGCCATAATTGAA
1 ATGAAAGGATGCCATAATTAAA
2537966 ATG
1 ATG
2537969 CATATGGGTG
Statistics
Matches: 34, Mismatches: 11, Indels: 6
0.67 0.22 0.12
Matches are distributed among these distances:
21 4 0.12
22 14 0.41
23 12 0.35
24 4 0.12
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (22 bp):
ATGAAAGGATGCCATAATTAAA
Found at i:2537974 original size:45 final size:45
Alignment explanation
Indices: 2537626--2538091 Score: 501
Period size: 45 Copynumber: 10.3 Consensus size: 45
2537616 TACATAAAAG
* * *** * **
2537626 GCATGAAAGGATGCCATAAATGAAATGTATAACAGTGTA-TAAAA
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
* * * *
2537670 TGCATTAAAGGATGTCATAATTGAAATGCATATGAGTGCATTATCG
1 -GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
* *
2537716 GCATGAAAGAATGCCATAATTGAAATACATATGGGTGCATTATCA
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
*
2537761 GCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATC-
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
* * * * * * *
2537805 GACCTAAAAGGATGGCATAATTAAAATACATATGGGTGGATTATCG
1 G-CATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
* *
2537851 GCATGAAAGGATGCAAATAATTGAAATGCATATGGGTGCATTATCG
1 GCATGAAAGGATGC-CATAATTGAAATGCATATGGGTGCATTATCA
* *
2537897 GCATGAAAGGATGCCATAATTAAAATGAATATGGGTGCATTATCA
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
2537942 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC-
1 GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
* * * *
2537986 GACATGAAAAGATGTCACAATTGAAATGTATATGGGTGCATTATC-
1 G-CATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
* ** * *
2538031 GACATGAAAGGATGACATAAATAAAAATACATAAT-GGTGCATTATAA
1 G-CATGAAAGGATGCCAT-AATTGAAATGCAT-ATGGGTGCATTATCA
* *
2538078 TCATGAATGGATGC
1 GCATGAAAGGATGC
2538092 TATCAATGAA
Statistics
Matches: 363, Mismatches: 50, Indels: 15
0.85 0.12 0.04
Matches are distributed among these distances:
44 2 0.01
45 285 0.79
46 74 0.20
47 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.27
Consensus pattern (45 bp):
GCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCA
Found at i:2538021 original size:181 final size:181
Alignment explanation
Indices: 2537686--2538044 Score: 578
Period size: 181 Copynumber: 2.0 Consensus size: 181
2537676 AAAGGATGTC
*
2537686 ATAATTGAAATGCATATGAGTGCATTATCGGCATGAAAGAATGCCATAATTGAAATACATATGGG
1 ATAATTGAAATGCATATGAGTGCATTATCGGCATGAAAGAATGCCATAATTAAAATACATATGGG
*
2537751 TGCATTATCAGCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCGACCTAAAAGG
66 TGCATTATCAGCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCGACATAAAAGG
* * *
2537816 ATGGCATAATTAAAATACATATGGGTGGATTATCGGCATGAAAGGATGCAA
131 ATGGCACAATTAAAATACATATGGGTGCATTATCGACATGAAAGGATGCAA
* *
2537867 ATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTAAAATGA-ATATGG
1 ATAATTGAAATGCATATGAGTGCATTATCGGCATGAAAGAATGCCATAATTAAAAT-ACATATGG
*
2537931 GTGCATTATCAGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGACATGAAAA
65 GTGCATTATCAGCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCGACAT-AAAA
* * **
2537996 -GATGTCACAATTGAAATGTATATGGGTGCATTATCGACATGAAAGGATG
129 GGATGGCACAATTAAAATACATATGGGTGCATTATCGACATGAAAGGATG
2538045 ACATAAATAA
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
181 159 0.97
182 5 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (181 bp):
ATAATTGAAATGCATATGAGTGCATTATCGGCATGAAAGAATGCCATAATTAAAATACATATGGG
TGCATTATCAGCATGAAAGGATGCCATAATTGAAATACATATGGGTGCATTATCGACATAAAAGG
ATGGCACAATTAAAATACATATGGGTGCATTATCGACATGAAAGGATGCAA
Found at i:2542304 original size:81 final size:81
Alignment explanation
Indices: 2542180--2542566 Score: 517
Period size: 81 Copynumber: 4.8 Consensus size: 81
2542170 CTCGAAAATA
** * * * ** *
2542180 AAAAGATTAAATAACCTAGCTGTGTATTTGGCAGAAATTTGTCAATTATGCCAATTAGATGAACG
1 AAAAGATT-AATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACG
*
2542245 GTTAAATACCGTCGAGT
65 GTTAAATACCGTTGAGT
* *
2542262 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAATGTGTCAATTATGCCAGTTAGATGAACGA
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACGG
2542327 TTAAATACCGTTGAGT
66 TTAAATACCGTTGAGT
* * * * *
2542343 AAAAGATTAATGGCCTAGCTGTGTATTTGGAAAAAAAGTGTTAATTATGTCAGTTAGATGAACGG
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACGG
*
2542408 TTAAATACGGTTGAGT
66 TTAAATACCGTTGAGT
* *
2542424 AAAAGATTAATGGCCTA-TATGTGCATTTGG-AAAAAAGGTGTCAATTATTCCTGTTAGATGAAC
1 AAAAGATTAATGGCCTAGT-TGTGCATTTGGCAAAAAA-GTGTCAATTATGCCAGTTAGATGAAC
*
2542487 GGTTAAATACAGTTGAGT
64 GGTTAAATACCGTTGAGT
* * * *
2542505 AAAAGATTAATGTCCTAGTTGTTCATTTGACAAAAAAGTGTCAATTATGCAAGTTAGATGAA
1 AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAA
2542567 AGGCTAAAGG
Statistics
Matches: 271, Mismatches: 30, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
80 6 0.02
81 250 0.92
82 15 0.06
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (81 bp):
AAAAGATTAATGGCCTAGTTGTGCATTTGGCAAAAAAGTGTCAATTATGCCAGTTAGATGAACGG
TTAAATACCGTTGAGT
Found at i:2542733 original size:45 final size:45
Alignment explanation
Indices: 2542684--2543054 Score: 478
Period size: 45 Copynumber: 8.2 Consensus size: 45
2542674 ATAAAAGTCC
* *
2542684 TGAAAGGATGACATAATTGAAATGCATATGGGTGCACTATCGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
2542729 TGAAAGGATGCTATAATTGAAATGTATAAGGGTGCATTATCGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
2542774 TGAAAGGATACCATAATTGAAATGCATACGGGTGCATTATTAGG-A
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA-TCGGCA
* * *
2542819 TGAAAAGATGTCATAATTGAAATGCATATGGGTGCATTATTGGCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* *
2542864 TGAAAGGATGCCATAATTGAAATGAATATGGGTGCATTATCGACA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * *
2542909 TGAAAGGATGCCATAACTGAAATGCATATGGGTGGATTATCGACA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
2542954 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATC-GCA
1 TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
* * ** * **
2542998 TGAAAGTATGTCATAAATAAAAACGCATAAT-GGTGCATTATAAGCA
1 TGAAAGGATGCCAT-AATTGAAATGCAT-ATGGGTGCATTATCGGCA
*
2543044 TGAATGGATGC
1 TGAAAGGATGC
2543055 TCTCAATGAA
Statistics
Matches: 286, Mismatches: 35, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
44 17 0.06
45 253 0.88
46 16 0.06
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (45 bp):
TGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCA
Found at i:2554116 original size:22 final size:23
Alignment explanation
Indices: 2554078--2554120 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
2554068 TGTTATGTTG
2554078 TTTATAACATTTTTAGGTCACGC
1 TTTATAACATTTTTAGGTCACGC
*
2554101 TTTATAATA-TTTTAGGTCAC
1 TTTATAACATTTTTAGGTCAC
2554121 ACATTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (23 bp):
TTTATAACATTTTTAGGTCACGC
Found at i:2558263 original size:21 final size:21
Alignment explanation
Indices: 2558238--2558307 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
2558228 ATACTTACCA
2558238 TTATTCCATAAGCTCGTAAGC
1 TTATTCCATAAGCTCGTAAGC
* * * *
2558259 TTATTTTACCA-AAACAC-TTACC
1 TTA--TT-CCATAAGCTCGTAAGC
2558281 ATTATTCCATAAGCTCGTAAGC
1 -TTATTCCATAAGCTCGTAAGC
2558303 TTATT
1 TTATT
2558308 TTACCCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 3 0.09
21 14 0.40
22 6 0.17
23 9 0.26
24 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (21 bp):
TTATTCCATAAGCTCGTAAGC
Found at i:2558265 original size:44 final size:44
Alignment explanation
Indices: 2558134--2558319 Score: 282
Period size: 44 Copynumber: 4.2 Consensus size: 44
2558124 AATTTCTTAT
*
2558134 CAATATACATACCATTTAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTAATCCATAAGCTCGTAAGCTTATTTTAC
* *
2558179 CAATATACTTACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACCATT-AATCCATAAGCTCGTAAGCTTATTTTAC
*
2558224 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTAATCCATAAGCTCGTAAGCTTATTTTAC
* * *
2558268 CAAAACACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTAATCCATAAGCTCGTAAGCTTATTTTAC
*
2558312 CCATATAC
1 CAATATAC
2558320 ATTATTCCAA
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
44 74 0.57
45 55 0.43
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.36
Consensus pattern (44 bp):
CAATATACTTACCATTAATCCATAAGCTCGTAAGCTTATTTTAC
Found at i:2558444 original size:43 final size:44
Alignment explanation
Indices: 2558336--2558445 Score: 159
Period size: 43 Copynumber: 2.5 Consensus size: 44
2558326 CCAATCGTAA
* * * *
2558336 ACCAATATACTTACCAATAAATACCTAAGCTCGTAAGCTTATTTT
1 ACCAATATACTTA-CTATAATTTCATAAGCTCGTAAGCTTATTTT
*
2558381 ATCAATATACTTACTATAATTTCATAAGCTCGTAAGCTTA-TTT
1 ACCAATATACTTACTATAATTTCATAAGCTCGTAAGCTTATTTT
2558424 ACCAATATACTTACTATAATTT
1 ACCAATATACTTACTATAATTT
2558446 GCATCACTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 24 0.41
44 23 0.39
45 12 0.20
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.38
Consensus pattern (44 bp):
ACCAATATACTTACTATAATTTCATAAGCTCGTAAGCTTATTTT
Found at i:2558641 original size:59 final size:60
Alignment explanation
Indices: 2558578--2558712 Score: 148
Period size: 61 Copynumber: 2.2 Consensus size: 60
2558568 TATCATATAC
* * *
2558578 TTAATATGATTTCCT-CC-TCATTTTAGCACACAAAGTGCCCTATGCGAGAATCTATACCA
1 TTAATATGATTTCCTACCAT-ATTTTAGCACACAAAGTGCCCTATACGAAAATCCATACCA
* * ** * *
2558637 TTAATATGATTTCTTTACCATTTTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTA
1 TTAATATGATTTC-CTACCATATTTTAGCACACAAAGTGCCCTATACGAAAATCCATACCA
*
2558698 TTAGTATGATTTCCT
1 TTAATATGATTTCCT
2558713 TATCCTTGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
59 13 0.21
60 2 0.03
61 46 0.74
62 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (60 bp):
TTAATATGATTTCCTACCATATTTTAGCACACAAAGTGCCCTATACGAAAATCCATACCA
Found at i:2558911 original size:59 final size:59
Alignment explanation
Indices: 2558522--2559019 Score: 415
Period size: 59 Copynumber: 8.4 Consensus size: 59
2558512 TATACAATTC
* * * * * * * * *
2558522 GTATAATTTCCTTATAATATTAGCACTCTCAGTTCTCTATCTGGAATAT-CATATACTTA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAA-ATCCATACACTCA
* ** ** * *
2558581 ATATGATTTCCTCCTCATTTTAGCACACAAAGTGC-CC-TATGCGAGAATCTATAC-CATTA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATG-GA-AATCCATACAC-TCA
* * * * * *
2558640 ATATGATTTCTTTACCATTTTTTAGCACA-TGAAGTGC-CCTATATGAAAATCCATACTA-TTA
1 GTATGATTTCCTTATCA--TTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATAC-ACTCA
* * * * *** *
2558701 GTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCCTTTTTTTGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTG-CTCCATATGGAAATCCATACACTCA
* * * * *
2558761 GTATGA-TTCTCTTACCATTTTAGCACA-TATAGTGC-CCTATTTGGAAATCCATATATTCA
1 GTATGATTTC-CTTATCATTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATACACTCA
*
2558820 ATATGATTT-CTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCA
* *
2558878 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATAGAAATCTATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCA
* * *
2558937 TTATGATTTCCTTATCGTTTTAGCACACTCAGTTCTCCATATGGAAATCCATACACTCA
1 GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCA
* *
2558996 GAATGATTTCCTTACCATTTTAGC
1 GTATGATTTCCTTATCATTTTAGC
2559020 GCATAGTGCC
Statistics
Matches: 356, Mismatches: 61, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
57 3 0.01
58 53 0.15
59 210 0.59
60 43 0.12
61 42 0.12
62 1 0.00
63 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (59 bp):
GTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCA
Found at i:2564393 original size:44 final size:44
Alignment explanation
Indices: 2564262--2564575 Score: 376
Period size: 44 Copynumber: 7.3 Consensus size: 44
2564252 AATTTCTTAT
* * * *
2564262 CAATATACATGCCATTTAATCCATAACCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
2564307 CAATATACTTACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
2564352 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
2564396 CAATACACTTACCATTATTCCATAAGATCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
2564440 CCATATACTTACCATTATTCCATAAACTCGT-A----A---TAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * *
2564476 CAATATACTTACCAATAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACC-ATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
2564521 CAATATACTTACTATAATTTCATAAGCTCGTAAGCTTA-TTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
2564564 CAATATACTTAC
1 CAATATACTTAC
2564576 TACAATTTGC
Statistics
Matches: 234, Mismatches: 25, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
36 15 0.06
37 14 0.06
38 1 0.00
39 1 0.00
42 1 0.00
43 17 0.07
44 118 0.50
45 67 0.29
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:2564527 original size:81 final size:80
Alignment explanation
Indices: 2564393--2564553 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 80
2564383 AAGCTTATTT
* * * *
2564393 TACCAATACACTTACCATTATTCCATAAGATCGTAAGCTTATTTTACCCATATACTTACCATTAT
1 TACCAATACACTTACCATAAATCCATAAGATCGTAAGCTTATTTTACCAATATACTTACCATAAT
2564458 TCCATAAACTCGTAA
66 TCCATAAACTCGTAA
* * * * *
2564473 TACCAATATACTTACCAATAAATCCCTAAGCTCGTAAGCTTATTTTATCAATATACTTACTATAA
1 TACCAATACACTTACC-ATAAATCCATAAGATCGTAAGCTTATTTTACCAATATACTTACCATAA
* *
2564538 TTTCATAAGCTCGTAA
65 TTCCATAAACTCGTAA
2564554 GCTTATTTAC
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 15 0.22
81 54 0.78
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (80 bp):
TACCAATACACTTACCATAAATCCATAAGATCGTAAGCTTATTTTACCAATATACTTACCATAAT
TCCATAAACTCGTAA
Found at i:2564553 original size:125 final size:123
Alignment explanation
Indices: 2564352--2564575 Score: 340
Period size: 125 Copynumber: 1.8 Consensus size: 123
2564342 CTTATTTTAT
* * *
2564352 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATTATTCC
1 CAATATACTTACCATAAATCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATAATTCC
*
2564417 ATAAGATCGTAAGCTTATTTTACCCATATACTTACCATTATTCCATAAACTCGTAATAC
66 ATAAGATCGTAAGCTTA-TTTACCAATATACTTACCATTATTCCATAAACTCGTAATAC
* * * * *
2564476 CAATATACTTACCAATAAATCCCTAAGCTCGTAAGCTTATTTTATCAATATACTTACTATAATTT
1 CAATATACTTACC-ATAAATCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATAATTC
*
2564541 CATAAGCTCGTAAGCTTATTTACCAATATACTTAC
65 CATAAGATCGTAAGCTTATTTACCAATATACTTAC
2564576 TACAATTTGC
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
124 29 0.33
125 60 0.67
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.37
Consensus pattern (123 bp):
CAATATACTTACCATAAATCCATAAGCTCGTAAGCTTATTTTACCAATACACTTACCATAATTCC
ATAAGATCGTAAGCTTATTTACCAATATACTTACCATTATTCCATAAACTCGTAATAC
Found at i:2564583 original size:43 final size:44
Alignment explanation
Indices: 2564499--2564583 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 44
2564489 AATAAATCCC
* *
2564499 TAAGCTCGTAAGCTTATTTTATCAATATACTTACTATAATTTCA
1 TAAGCTCGTAAGCTTATTTTACCAATATACTTACTACAATTTCA
2564543 TAAGCTCGTAAGCTTA-TTTACCAATATACTTACTACAATTT
1 TAAGCTCGTAAGCTTATTTTACCAATATACTTACTACAATTT
2564584 GCATCACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 23 0.59
44 16 0.41
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (44 bp):
TAAGCTCGTAAGCTTATTTTACCAATATACTTACTACAATTTCA
Found at i:2564779 original size:59 final size:60
Alignment explanation
Indices: 2564716--2564850 Score: 157
Period size: 61 Copynumber: 2.2 Consensus size: 60
2564706 TATCATATAC
* * *
2564716 TTAATATGATTTCCT-CC-TCATTTTAGCACACGAAGTGCCCTATGCGAGAATCTATACCA
1 TTAATATGATTTCCTACCAT-ATTTTAGCACACGAAGTGCCCTATACGAAAATCCATACCA
* * * * *
2564775 TTAATATGATTTCTTTACCATTTTTTAGCACATGAAGTGCCCTATATGAAAATCCATACTA
1 TTAATATGATTTC-CTACCATATTTTAGCACACGAAGTGCCCTATACGAAAATCCATACCA
*
2564836 TTAGTATGATTTCCT
1 TTAATATGATTTCCT
2564851 TATTCTTGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
59 13 0.21
60 2 0.03
61 47 0.75
62 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.38
Consensus pattern (60 bp):
TTAATATGATTTCCTACCATATTTTAGCACACGAAGTGCCCTATACGAAAATCCATACCA
Found at i:2564887 original size:59 final size:58
Alignment explanation
Indices: 2564810--2565033 Score: 215
Period size: 59 Copynumber: 3.8 Consensus size: 58
2564800 TAGCACATGA
* * * *
2564810 AGTGCCCTATATGAAAATCCATACTA-TTAGTATGATTTCCTTATTC-TTGTAGCACCCTT
1 AGTG-CCTATTTGGAAATCCATAC-ACTCAGTATGATTTCCTTA-TCATTTTAGCACCCTT
* * *
2564869 AGTGCCTTTTCTGGAAATCCATACACTCAGTATGA-TTCTCTTACCATTTTAGCA-CATAT
1 AGTGCCTATT-TGGAAATCCATACACTCAGTATGATTTC-CTTATCATTTTAGCACCCT-T
* * * * *
2564928 AGTGCCCTATTTGGAAATCCATATATTCAATATGATTT-CTTATCATTTTAGCACACTC
1 AGTG-CCTATTTGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACCCTT
* *
2564986 AGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCATT
1 AGTGC-CTATTTGGAAATCCATACACTCAGTATGATTTCCTTATCATT
2565034 GATGCCATTA
Statistics
Matches: 135, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
57 1 0.01
58 56 0.41
59 71 0.53
60 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (58 bp):
AGTGCCTATTTGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACCCTT
Done.