Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007819.1 Hibiscus syriacus cultivar Beakdansim tig00110156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3855360
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2745 characters in sequence are not A, C, G, or T
File 3 of 17
Found at i:350367 original size:12 final size:15
Alignment explanation
Indices: 350332--350367 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
350322 CTTCTTCCTC
350332 CTTTCTTCTCCCTTT
1 CTTTCTTCTCCCTTT
350347 CTTTCTTCTCCCTTT
1 CTTTCTTCTCCCTTT
*
350362 TTTTCT
1 CTTTCT
350368 GCTTACAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (15 bp):
CTTTCTTCTCCCTTT
Found at i:358060 original size:183 final size:184
Alignment explanation
Indices: 357751--358118 Score: 729
Period size: 183 Copynumber: 2.0 Consensus size: 184
357741 GTGTGTAAAA
357751 TTCGGCGTCTGAATTTGGATTAGTAAATTTTGTGATTTCAAAATAACTCGGATCAACGTGACCAT
1 TTCGGCGTCTGAATTTGGATTAGTAAATTTTGTGATTTCAAAATAACTCGGATCAACGTGACCAT
357816 ATTGCTTGCATTCCTCAAATTTTACTTCGATGTAGGGATAAATAAGAGACTCAAGTACCTCCACA
66 ATTGCTTGCATTCCTCAAATTTTACTTCGATGTAGGGATAAATAAGAGACTCAAGTACCTCCACA
357881 GATGCATGATATAAATTTAGTCCAAACAAGATAAAAGGAGTTAAACAGTAATAT
131 GATGCATGATATAAATTTAGTCCAAACAAGATAAAAGGAGTTAAACAGTAATAT
357935 TTCGGCGTCTGAATTTGGATTAGTAAATTTTGTGATTTCAAAATAACTCGGATC-ACGTGACCAT
1 TTCGGCGTCTGAATTTGGATTAGTAAATTTTGTGATTTCAAAATAACTCGGATCAACGTGACCAT
357999 ATTGCTTGCATTCCTCAAATTTTACTTCGATGTAGGGATAAATAAGAGACTCAAGTACCTCCACA
66 ATTGCTTGCATTCCTCAAATTTTACTTCGATGTAGGGATAAATAAGAGACTCAAGTACCTCCACA
358064 GATGCATGATATAAATTTAGTCCAAACAAGATAAAAGGAGTTAAACAGTAATAT
131 GATGCATGATATAAATTTAGTCCAAACAAGATAAAAGGAGTTAAACAGTAATAT
358118 T
1 T
358119 GTTAGACCTA
Statistics
Matches: 184, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
183 130 0.71
184 54 0.29
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (184 bp):
TTCGGCGTCTGAATTTGGATTAGTAAATTTTGTGATTTCAAAATAACTCGGATCAACGTGACCAT
ATTGCTTGCATTCCTCAAATTTTACTTCGATGTAGGGATAAATAAGAGACTCAAGTACCTCCACA
GATGCATGATATAAATTTAGTCCAAACAAGATAAAAGGAGTTAAACAGTAATAT
Found at i:362823 original size:3 final size:3
Alignment explanation
Indices: 362815--362839 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
362805 ATACAACGGC
362815 CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C
362840 ATGTTTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:370049 original size:51 final size:51
Alignment explanation
Indices: 369994--370107 Score: 113
Period size: 59 Copynumber: 2.1 Consensus size: 51
369984 ACAGCCCCAG
* * *
369994 TTAAAGAAAGG-CACCTTCATACTATCAGGAACAACTATACAAGAACCTTTA
1 TTAAACAAAGGACACCTTCAGACTATCAAGAACAACTATACAAGAACC-TTA
*
370045 TTAAAAATTTAACAAAGGACACCTTCAGGCTATCAAGAACAACTATACAAGAACCTTA
1 TT----A---AACAAAGGACACCTTCAGACTATCAAGAACAACTATACAAGAACCTTA
370103 TTAAA
1 TTAAA
370108 TCTTTTAACA
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
51 4 0.08
54 1 0.02
55 1 0.02
58 12 0.24
59 33 0.65
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.24
Consensus pattern (51 bp):
TTAAACAAAGGACACCTTCAGACTATCAAGAACAACTATACAAGAACCTTA
Found at i:376139 original size:29 final size:29
Alignment explanation
Indices: 376106--376164 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
376096 GAAAATGTTG
376106 AATGCAAAATAAAAATTGAAGCTATTCCA
1 AATGCAAAATAAAAATTGAAGCTATTCCA
376135 AATGCAAAATAAAAATTGAAGCTATTCCA
1 AATGCAAAATAAAAATTGAAGCTATTCCA
376164 A
1 A
376165 TATTACTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.24
Consensus pattern (29 bp):
AATGCAAAATAAAAATTGAAGCTATTCCA
Found at i:380344 original size:41 final size:40
Alignment explanation
Indices: 380299--380395 Score: 99
Period size: 40 Copynumber: 2.4 Consensus size: 40
380289 TCATTCTTTA
**
380299 GTGGCGTTTTTAAACAAACGCTGA-AATAGGGTACATATATC
1 GTGGC-TTTTTAAACAAAC-CCCATAATAGGGTACATATATC
* * *
380340 GTGGCATTTGT-AGCAAACCCCATAATAGGGTACATATATT
1 GTGGC-TTTTTAAACAAACCCCATAATAGGGTACATATATC
*
380380 GTGGCTTTTTAGACAA
1 GTGGCTTTTTAAACAA
380396 CCGCCGCAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
39 6 0.13
40 30 0.67
41 9 0.20
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (40 bp):
GTGGCTTTTTAAACAAACCCCATAATAGGGTACATATATC
Found at i:384431 original size:11 final size:11
Alignment explanation
Indices: 384415--384455 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
384405 TAAATTAATG
384415 AAATAAAAATA
1 AAATAAAAATA
384426 AAATAAAAAATA
1 AAAT-AAAAATA
384438 AAACT-AAAATA
1 AAA-TAAAAATA
384449 AAATAAA
1 AAATAAA
384456 TTATAAACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 1 0.04
11 15 0.56
12 10 0.37
13 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:384438 original size:18 final size:18
Alignment explanation
Indices: 384415--384451 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
384405 TAAATTAATG
384415 AAATAAAAATAAAATAAA
1 AAATAAAAATAAAATAAA
*
384433 AAATAAAACTAAAATAAA
1 AAATAAAAATAAAATAAA
384451 A
1 A
384452 TAAATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (18 bp):
AAATAAAAATAAAATAAA
Found at i:384606 original size:35 final size:31
Alignment explanation
Indices: 384535--384622 Score: 108
Period size: 31 Copynumber: 2.7 Consensus size: 31
384525 TATTTAGAAA
*
384535 GGTTTTCAAAATATATTAGTATTTTTCAAAT
1 GGTTTTCAAAATATATTAATATTTTTCAAAT
384566 GGTTTTCAAAACTAGTATATAATATTTTTCAAAAAT
1 GGTTTTCAAAA-TA-TAT-TAATATTTTTC--AAAT
384602 -GTTTTCAAAATATATT-ATATT
1 GGTTTTCAAAATATATTAATATT
384623 ATATTATATT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
31 16 0.31
32 3 0.06
33 6 0.12
34 12 0.24
35 10 0.20
36 4 0.08
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.47
Consensus pattern (31 bp):
GGTTTTCAAAATATATTAATATTTTTCAAAT
Found at i:384621 original size:36 final size:34
Alignment explanation
Indices: 384535--384627 Score: 95
Period size: 36 Copynumber: 2.8 Consensus size: 34
384525 TATTTAGAAA
*
384535 GGTTTTC-AAAATA-TAT-TAGTATTTTTCAAAT
1 GGTTTTCAAAAATAGTATATAATATTTTTCAAAT
*
384566 GGTTTTCAAAACTAGTATATAATATTTTTCAAAAAT
1 GGTTTTCAAAAATAGTATATAATATTTTTC--AAAT
* *
384602 -GTTTTCAAAATATATTATATTATATT
1 GGTTTTCAAAA-ATAGTATATAATATT
384628 ATATTATATC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
31 7 0.14
32 5 0.10
33 3 0.06
34 10 0.20
35 10 0.20
36 16 0.31
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (34 bp):
GGTTTTCAAAAATAGTATATAATATTTTTCAAAT
Found at i:384622 original size:5 final size:5
Alignment explanation
Indices: 384612--384878 Score: 428
Period size: 5 Copynumber: 53.6 Consensus size: 5
384602 GTTTTCAAAA
* *
384612 TATAT TATAT TATAT TATAT TATAT CATAT TATAT CATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * * * * * * *
384662 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
384712 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
*
384762 TATAT TATAT TATAT TATAC TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
384812 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA- TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
384861 TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TAT
384879 TTAAAAAATA
Statistics
Matches: 253, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
4 4 0.02
5 249 0.98
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:393153 original size:195 final size:197
Alignment explanation
Indices: 392821--393212 Score: 770
Period size: 195 Copynumber: 2.0 Consensus size: 197
392811 AATATCCCAC
392821 ATCGTTTTCTTCAATATTTATATATAATCTCCATGCATAATATTTATATATAAATTTTAAAATAA
1 ATCGTTTTCTTCAATATTTATATATAATCTCCATGCATAATATTTATATATAAATTTTAAAATAA
392886 TATATATATATAACCCAGGGAAGAAAACCTATATAAAGTAACAATTAATCTTCACAAAAAAATAA
66 TATATATATATAACCCAGGGAAGAAAACCTATATAAAGTAACAATTAATCTTCACAAAAAAATAA
392951 ATAAATATG-ATTTTGTAAAAAGTGTAATTTTGTCTGTTCCATG-AAACTCATTAATTTAACTGA
131 ATAAATATGAATTTTGTAAAAAGTGTAATTTTGTCTGTTCCATGAAAACTCATTAATTTAACTGA
393014 AA
196 AA
393016 ATCGTTTTCTTCAATATTTATATATAATCTCCATGCATAATATTTATATATAAATTTTAAAATAA
1 ATCGTTTTCTTCAATATTTATATATAATCTCCATGCATAATATTTATATATAAATTTTAAAATAA
393081 TATATATATATAACCCAGGGAAGAAAACCTATATAAAGTAACAATTAATCTTCACAAAAAAATAA
66 TATATATATATAACCCAGGGAAGAAAACCTATATAAAGTAACAATTAATCTTCACAAAAAAATAA
393146 ATAAATATGAATTTTGTAAAAAGTGTAATTTTGTCTGTTCCATGAAAACTCATTAATTTAACTGA
131 ATAAATATGAATTTTGTAAAAAGTGTAATTTTGTCTGTTCCATGAAAACTCATTAATTTAACTGA
393211 AA
196 AA
393213 CAGAATGTGT
Statistics
Matches: 195, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
195 139 0.71
196 34 0.17
197 22 0.11
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (197 bp):
ATCGTTTTCTTCAATATTTATATATAATCTCCATGCATAATATTTATATATAAATTTTAAAATAA
TATATATATATAACCCAGGGAAGAAAACCTATATAAAGTAACAATTAATCTTCACAAAAAAATAA
ATAAATATGAATTTTGTAAAAAGTGTAATTTTGTCTGTTCCATGAAAACTCATTAATTTAACTGA
AA
Found at i:400311 original size:77 final size:77
Alignment explanation
Indices: 400171--400321 Score: 173
Period size: 77 Copynumber: 2.0 Consensus size: 77
400161 AGAAATACAA
* * * * * * *
400171 TTGTGTCCAATAATGTCATGGTTCAGTAAGAAATAAATTGTGATCTGTAATGTTAATATTTTTTT
1 TTGTGCCCAAGAATGCCATGGTTCACTAAGAAATAAATTGTAATCAGTAATCTTAATA-TTTTTT
400236 AATAA-AAATAAG
65 AATAATAAATAAG
**
400248 TTGTGCCCAAGAATGCCATGGTTCACTAAGAAAGTAGGTTGTAATCCAG-AATCTTAATA-TTTT
1 TTGTGCCCAAGAATGCCATGGTTCACTAAGAAA-TAAATTGTAAT-CAGTAATCTTAATATTTTT
400311 TAATAATAAAT
64 TAATAATAAAT
400322 TGGGTTGCGC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
76 10 0.16
77 33 0.53
78 17 0.27
79 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (77 bp):
TTGTGCCCAAGAATGCCATGGTTCACTAAGAAATAAATTGTAATCAGTAATCTTAATATTTTTTA
ATAATAAATAAG
Found at i:400928 original size:74 final size:74
Alignment explanation
Indices: 400717--400928 Score: 259
Period size: 72 Copynumber: 2.9 Consensus size: 74
400707 ATATATTATT
* * * * *
400717 ATCGATACTTTTAAATATTGAACAAGTTTAAG-GTAAGATCAAAATTTAAAATATTGATACTTAT
1 ATCGATACTTTTAAATATTGAACAAGTTGATGAATAAGATCGAAATTTAAAATATCGATACTTAT
*
400781 GCAGTAATG
66 GCAATAATG
* * *
400790 ATTGATACTTTTAAAAATTGAA-AAGTTGAT-AAAAAGATCGAAATTTAAAATATCGATACTTAT
1 ATCGATACTTTTAAATATTGAACAAGTTGATGAATAAGATCGAAATTTAAAATATCGATACTTAT
*
400853 GCAATGATG
66 GCAATAATG
** * * * *
400862 ATCGATACTTTTAGTTATTGAACAAGTTGATGAATATGATCGATAGTTAAAATATCGATACATAT
1 ATCGATACTTTTAAATATTGAACAAGTTGATGAATAAGATCGAAATTTAAAATATCGATACTTAT
400927 GC
66 GC
400929 GACGAGGTTC
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
72 59 0.50
73 28 0.24
74 30 0.26
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (74 bp):
ATCGATACTTTTAAATATTGAACAAGTTGATGAATAAGATCGAAATTTAAAATATCGATACTTAT
GCAATAATG
Found at i:401426 original size:99 final size:99
Alignment explanation
Indices: 401165--401480 Score: 366
Period size: 100 Copynumber: 3.2 Consensus size: 99
401155 AGGTGCTACA
* * * *
401165 TACTACGTTATCATGAAAAACCTATTTTGTCTTACTTTTGCATAATATAAACGGTTTCATGCTTA
1 TACTACGTTATCACGAGAAACAT-TTTTGTCTTACTTTTGCATAATATAAACGGTTTCATACTTA
** * *
401230 TAACTTAAACAATTAACATTAAAAAAAGACGTTACC
65 TAACTTAAACGGTTGACATTAAAAAATG-CGTTACC
* * * *
401266 TAGTTCGTTATCATGA-ATAACATATTTGTCTTACTTTTGCATAATATAAACGGTTTCATACTTA
1 TACTACGTTATCACGAGA-AACATTTTTGTCTTACTTTTGCATAATATAAACGGTTTCATACTTA
*
401330 TGACTTAAACGGTTGACA-TAAAAAATGCGTTACC
65 TAACTTAAACGGTTGACATTAAAAAATGCGTTACC
* * * * ** * *
401364 TACTACATTATCACGAGAAACTTGTTTTTTCTTACTTTTGCATCATATAAACAATTTTATACTTG
1 TACTACGTTATCACGAGAAACAT-TTTTGTCTTACTTTTGCATAATATAAACGGTTTCATACTTA
*
401429 TAACTTAAACGGTTGACATTAAAAAATGCGCTACC
65 TAACTTAAACGGTTGACATTAAAAAATGCGTTACC
* *
401464 TATTACGTTTTCACGAG
1 TACTACGTTATCACGAG
401481 CATAACAAAA
Statistics
Matches: 184, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
98 23 0.12
99 60 0.33
100 83 0.45
101 18 0.10
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (99 bp):
TACTACGTTATCACGAGAAACATTTTTGTCTTACTTTTGCATAATATAAACGGTTTCATACTTAT
AACTTAAACGGTTGACATTAAAAAATGCGTTACC
Found at i:401772 original size:69 final size:72
Alignment explanation
Indices: 401612--401793 Score: 219
Period size: 73 Copynumber: 2.6 Consensus size: 72
401602 TAACTTTCGG
* * * * * *
401612 ATTTAAAAGTATCGATATTTTTGGAAAAATATTTATATTTTGCATCCTTATCATTTTTCATGTTT
1 ATTTAAAAGTATCGATACTTTT-GAAAAATATATATACTTTACAACCTTATCATTTTTCATATTT
401677 TTCTTTAA
65 TTCTTTAA
* *
401685 ATTTAAAAGTATCGATACTTTTGAAAAAATATATATACTTTATAACCTTCTCATTTTT-A-ATTT
1 ATTTAAAAGTATCGATACTTTTG-AAAAATATATATACTTTACAACCTTATCATTTTTCATATTT
401748 TT-TTT-A
65 TTCTTTAA
* * *
401754 ATTTGAAAGTATCGATACTTGTGAAAAATATACATACTTT
1 ATTTAAAAGTATCGATACTTTTGAAAAATATATATACTTT
401794 TGAATTAAGA
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
68 16 0.16
69 22 0.23
70 3 0.03
71 5 0.05
72 2 0.02
73 49 0.51
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.48
Consensus pattern (72 bp):
ATTTAAAAGTATCGATACTTTTGAAAAATATATATACTTTACAACCTTATCATTTTTCATATTTT
TCTTTAA
Found at i:402062 original size:77 final size:77
Alignment explanation
Indices: 401932--402083 Score: 225
Period size: 77 Copynumber: 2.0 Consensus size: 77
401922 CTTTTGAACT
* ** *
401932 TTTTATAATAAAAATATTAACATTCCATATCACAATTTAATTTCTTAGTGAACCATGACATTCTT
1 TTTTATAATAAAAATATTAACATTCCAGATCACAACCTAATTTCTTAGTGAACCATAACATTCTT
401997 GGGTGAAACTCA
66 GGGTGAAACTCA
* *
402009 TTTTATTAATAAAAATATTTACATTCCAGATCGCAACCT-ATTTCTTAGTGAACCATAACATTCT
1 TTTTA-TAATAAAAATATTAACATTCCAGATCACAACCTAATTTCTTAGTGAACCATAACATTCT
*
402073 TGGGTGCAACT
65 TGGGTGAAACT
402084 GTATTTCTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
77 39 0.58
78 28 0.42
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (77 bp):
TTTTATAATAAAAATATTAACATTCCAGATCACAACCTAATTTCTTAGTGAACCATAACATTCTT
GGGTGAAACTCA
Found at i:402322 original size:77 final size:77
Alignment explanation
Indices: 402192--402392 Score: 312
Period size: 77 Copynumber: 2.6 Consensus size: 77
402182 TAAGTGTAAT
* * * * * *
402192 CCATTTTATTAATAAAAATATTAACATTCCAGATCATAACATATTTATTAGTGAACTATGACATT
1 CCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTGAGTGAACCATGACATT
*
402257 CTTGGGTGCAAC
66 CTTGGGCGCAAC
*
402269 CCATTTTATTAATAAAAATGTTAACATTCCATATCACAACCTATTTCTGAGTGAACCATGACATT
1 CCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTGAGTGAACCATGACATT
402334 CTTGGGCGCAAC
66 CTTGGGCGCAAC
* *
402346 CTATTTTATTAATAAAAATATTAACATTCCATATCGCAACCTATTTC
1 CCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTC
402393 ATTAATAAAA
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 113 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (77 bp):
CCATTTTATTAATAAAAATATTAACATTCCATATCACAACCTATTTCTGAGTGAACCATGACATT
CTTGGGCGCAAC
Found at i:402418 original size:39 final size:40
Alignment explanation
Indices: 402340--402431 Score: 159
Period size: 39 Copynumber: 2.3 Consensus size: 40
402330 CATTCTTGGG
*
402340 CGCAACCTATTTTATTAATAAAAATATTAACATTCCATAT
1 CGCAACCTATTTCATTAATAAAAATATTAACATTCCATAT
*
402380 CGCAACCTATTTCATTAAT-AAAATATTAACATTTCATAT
1 CGCAACCTATTTCATTAATAAAAATATTAACATTCCATAT
402419 CGCAACCTATTTC
1 CGCAACCTATTTC
402432 TTAGTGAACC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 32 0.64
40 18 0.36
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (40 bp):
CGCAACCTATTTCATTAATAAAAATATTAACATTCCATAT
Found at i:403152 original size:15 final size:15
Alignment explanation
Indices: 403132--403186 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
403122 TAATCATCAA
403132 AATATAATAATTGAT
1 AATATAATAATTGAT
*
403147 AATATAAGTGATT-AT
1 AATATAA-TAATTGAT
*
403162 AATTTAATAAATTGAT
1 AATATAAT-AATTGAT
403178 AATA-AATAA
1 AATATAATAA
403187 CGTAAACAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
14 3 0.09
15 21 0.64
16 9 0.27
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (15 bp):
AATATAATAATTGAT
Found at i:407593 original size:26 final size:26
Alignment explanation
Indices: 407560--407619 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
407550 TACTATTTTT
* *
407560 TATTATTTAATAAGGTTTCCTTTTCC
1 TATTATTTAAGAAGATTTCCTTTTCC
*
407586 TATTATTTAAGAAGATTTCTTTTTCC
1 TATTATTTAAGAAGATTTCCTTTTCC
407612 TATTATTT
1 TATTATTT
407620 TTATAGTCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.57
Consensus pattern (26 bp):
TATTATTTAAGAAGATTTCCTTTTCC
Found at i:408315 original size:45 final size:45
Alignment explanation
Indices: 408239--408428 Score: 217
Period size: 45 Copynumber: 4.2 Consensus size: 45
408229 TAATCCAAGG
* * * **
408239 TTTTAATTATTGAGTTGCCAAAAATAAAATCAAAAAATTAGTTCC
1 TTTTGATTATTGAGTTGTCAAAATTAAAATCAAAGGATTAGTTCC
* * *
408284 TTTTGATTATTCAGTTGTCAAAAGTATAATCAAAGGATTAGTTTCC
1 TTTTGATTATTGAGTTGTCAAAATTAAAATCAAAGGATTAG-TTCC
*
408330 -TTTGATTATTGAGTT-TCAGAAATTAAAATCAAATGATTAGTT-C
1 TTTTGATTATTGAGTTGTCA-AAATTAAAATCAAAGGATTAGTTCC
* *
408373 TTTTCGATTATTG-GATTGTGAAAATTAAAATCAAAGGATTAGTTTC
1 TTTT-GATTATTGAG-TTGTCAAAATTAAAATCAAAGGATTAGTTCC
408419 TTTTGATTAT
1 TTTTGATTAT
408429 CAGGTTGCTA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.01
44 9 0.07
45 104 0.83
46 11 0.09
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (45 bp):
TTTTGATTATTGAGTTGTCAAAATTAAAATCAAAGGATTAGTTCC
Found at i:408359 original size:90 final size:90
Alignment explanation
Indices: 408244--408428 Score: 241
Period size: 90 Copynumber: 2.1 Consensus size: 90
408234 CAAGGTTTTA
408244 ATTATTGAGTTGCCAAAAATAAAATCAAAAAATTAGTTCCTTTT-GATTATTCAG-TTGTCAAAA
1 ATTATTGAGTTGCCAAAAATAAAATCAAAAAATTAGTT-CTTTTCGATTATT-AGATTGTCAAAA
*
408307 GTATAATCAAAGGATTAGTTTCCTTTG
64 GTAAAATCAAAGGATTAGTTTCCTTTG
* * ** * * *
408334 ATTATTGAGTT-TCAGAAATTAAAATCAAATGATTAGTTCTTTTCGATTATTGGATTGTGAAAAT
1 ATTATTGAGTTGCCA-AAAATAAAATCAAAAAATTAGTTCTTTTCGATTATTAGATTGTCAAAAG
*
408398 TAAAATCAAAGGATTAGTTTCTTTTG
65 TAAAATCAAAGGATTAGTTTCCTTTG
408424 ATTAT
1 ATTAT
408429 CAGGTTGCTA
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
89 8 0.10
90 75 0.90
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.41
Consensus pattern (90 bp):
ATTATTGAGTTGCCAAAAATAAAATCAAAAAATTAGTTCTTTTCGATTATTAGATTGTCAAAAGT
AAAATCAAAGGATTAGTTTCCTTTG
Found at i:410145 original size:26 final size:26
Alignment explanation
Indices: 410096--410148 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
410086 TAATTTACCT
* *
410096 TTCTTTATTTTCTTTAATTATTTTTC
1 TTCTTTAATTTCTTTAAATATTTTTC
*
410122 TTCTTTAATTTCTTTACA-ATTTTTC
1 TTCTTTAATTTCTTTAAATATTTTTC
410147 TT
1 TT
410149 TCAATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (26 bp):
TTCTTTAATTTCTTTAAATATTTTTC
Found at i:412371 original size:69 final size:69
Alignment explanation
Indices: 412280--412415 Score: 236
Period size: 69 Copynumber: 2.0 Consensus size: 69
412270 AGTGACCCAA
* **
412280 GTTGGTTGTGGTGTCTTATATATATTTTATGTATGTTTACTTTACCTTTATATTTTATATTAAAA
1 GTTGGTTGTGGTGTCTTATATATATTTTATGTATGATTACTTTACCTTTATATTACATATTAAAA
412345 GTGT
66 GTGT
*
412349 GTTGGTTGTGGTGTCTTTTATATATTTTATGTATGATTACTTTACCTTTATATTACATATTAAAA
1 GTTGGTTGTGGTGTCTTATATATATTTTATGTATGATTACTTTACCTTTATATTACATATTAAAA
412414 GT
66 GT
412416 ATGGTAATTC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54
Consensus pattern (69 bp):
GTTGGTTGTGGTGTCTTATATATATTTTATGTATGATTACTTTACCTTTATATTACATATTAAAA
GTGT
Found at i:412502 original size:24 final size:24
Alignment explanation
Indices: 412475--412533 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
412465 ACATATACGG
412475 TATATAATATATT-TTGTAAGTATA
1 TATATAATATATTATT-TAAGTATA
* *
412499 TATATATTATATTATTTAAGTGTA
1 TATATAATATATTATTTAAGTATA
412523 T-TATATATATA
1 TATATA-ATATA
412534 GGTTGTACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 4 0.13
24 24 0.80
25 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.53
Consensus pattern (24 bp):
TATATAATATATTATTTAAGTATA
Found at i:412643 original size:2 final size:2
Alignment explanation
Indices: 412578--412635 Score: 95
Period size: 2 Copynumber: 30.5 Consensus size: 2
412568 TTTATTATCC
412578 AT AT -T AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
412618 AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT A
412636 GCATATATGC
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
1 3 0.06
2 50 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:412933 original size:80 final size:79
Alignment explanation
Indices: 412844--413053 Score: 264
Period size: 80 Copynumber: 2.6 Consensus size: 79
412834 TAGTTTGTTT
* *
412844 TTTTAAATTATAATATATATATAATCATTATAATATTTGTTTGTCCACTTGTTTCGTTAATTTAA
1 TTTT-AATTATAATATATATATAATCATTATAATATTTGTTT-TCCACTTATTTCCTTAATTTAA
* **
412909 GCTATAGTGGTTTAGC
64 GCGATAGAAGTTTAGC
412925 TTTTAATTATAATATATATGA-AATCATTATAATATTTGTTTCTCCACTTATTTCCTTAATTTAA
1 TTTTAATTATAATATATAT-ATAATCATTATAATATTTGTTT-TCCACTTATTTCCTTAATTTAA
*
412989 GCGATAGAAGTTTAGT
64 GCGATAGAAGTTTAGC
* *
413005 TTTTTATTGATTATA-ATATATGGAATCATTATAATATTT-TTTTCCACTT
1 TTTTAATT-ATAATATATATAT--AATCATTATAATATTTGTTTTCCACTT
413054 TCCCTAATTT
Statistics
Matches: 115, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
79 1 0.01
80 85 0.74
81 13 0.11
82 16 0.14
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (79 bp):
TTTTAATTATAATATATATATAATCATTATAATATTTGTTTTCCACTTATTTCCTTAATTTAAGC
GATAGAAGTTTAGC
Found at i:414806 original size:30 final size:30
Alignment explanation
Indices: 414771--414891 Score: 188
Period size: 30 Copynumber: 4.0 Consensus size: 30
414761 TTGCTGGAAA
* *
414771 CTCTCTTAAATCAACCAATGGTCAATTTTT
1 CTCTCTTAAATCAACCAAGGGTCAATTTCT
* *
414801 CTCTCTTAAATCAGCCAAGGGTTAATTTCT
1 CTCTCTTAAATCAACCAAGGGTCAATTTCT
* *
414831 CTCTCTTAAATCAGCCAAGGGTTAATTTCT
1 CTCTCTTAAATCAACCAAGGGTCAATTTCT
414861 CTCTCTTAAATCAACCAAGGGTCAATTTCT
1 CTCTCTTAAATCAACCAAGGGTCAATTTCT
414891 C
1 C
414892 CTTCCCTCTT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (30 bp):
CTCTCTTAAATCAACCAAGGGTCAATTTCT
Found at i:415692 original size:58 final size:58
Alignment explanation
Indices: 415621--415926 Score: 377
Period size: 58 Copynumber: 5.3 Consensus size: 58
415611 AATCTTGTGT
* * ** * *
415621 TGATTCTAACTTTGGAAGGAAAATAAATCGTTGAATTTATTTCCTAAACAATCTTAAA
1 TGATTCTAACTTTGTAAGGAAAATAAATAGTTGAATTTATTTCCTTGAGAATCTTGAA
* * *
415679 TGATTCTAACTTTGTAAGTAAAATAAATAGTTGAATTTATTTCCTTGAGAATATTAAA
1 TGATTCTAACTTTGTAAGGAAAATAAATAGTTGAATTTATTTCCTTGAGAATCTTGAA
** * * * * *
415737 TGATTCTAACTTTGTAACAAAAATAAATAATTGAATTTGTTTTCGTGAGAATCTTGGA
1 TGATTCTAACTTTGTAAGGAAAATAAATAGTTGAATTTATTTCCTTGAGAATCTTGAA
*
415795 TGATTCTAACTTTGTAAGGAAAA-AAATAGTT-AGATTCAATTT-CTTGAGAATCTTGAA
1 TGATTCTAACTTTGTAAGGAAAATAAATAGTTGA-ATT-TATTTCCTTGAGAATCTTGAA
* *
415852 TGATTCTAACTTTGTAAGGAAAATAAATAGTTTG-ATTTCTTTCCTTGATAATCTTGAA
1 TGATTCTAACTTTGTAAGGAAAATAAATAG-TTGAATTTATTTCCTTGAGAATCTTGAA
*
415910 TGATTCTAAATTTGTAA
1 TGATTCTAACTTTGTAA
415927 AAAAAAAAAT
Statistics
Matches: 215, Mismatches: 27, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
56 1 0.00
57 49 0.23
58 163 0.76
59 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (58 bp):
TGATTCTAACTTTGTAAGGAAAATAAATAGTTGAATTTATTTCCTTGAGAATCTTGAA
Found at i:415880 original size:115 final size:114
Alignment explanation
Indices: 415621--415936 Score: 359
Period size: 115 Copynumber: 2.7 Consensus size: 114
415611 AATCTTGTGT
* ** * * *
415621 TGATTCTAACTTTGGAAGGAAAATAAATCGTTGAATTTATTTCCTAAACAATCTTAAATGATTCT
1 TGATTCTAACTTTGTAAGGAAAATAAATAATTGAATTTTTTTCCT-GACAATCTTGAATGATTCT
* *
415686 AACTTTGTAAGTAAAATAAATAGTTGAATTTATTTCCTTGAGAATATTAAA
65 AACTTTGTAAG-AAAAAAAATAGTTGAATTAATTTCCTTGAGAATATTAAA
** * * *
415737 TGATTCTAACTTTGTAACAAAAATAAATAATTGAATTTGTTTTCGTGAGAATCTTGGATGATTCT
1 TGATTCTAACTTTGTAAGGAAAATAAATAATTGAATTT-TTTTCCTGACAATCTTGAATGATTCT
* * *
415802 AACTTTGTAAGGAAAAAAATAGTT-AGATTCAATTT-CTTGAGAATCTTGAA
65 AACTTTGTAAGAAAAAAAATAGTTGA-ATT-AATTTCCTTGAGAATATTAAA
* * *
415852 TGATTCTAACTTTGTAAGGAAAATAAATAGTTTG-ATTTCTTTCCTTGATAATCTTGAATGATTC
1 TGATTCTAACTTTGTAAGGAAAATAAATA-ATTGAATTTTTTTCC-TGACAATCTTGAATGATTC
* *
415916 TAAATTTGTAAAAAAAAAAAT
64 TAACTTTGTAAGAAAAAAAAT
415937 CATTGTTTCG
Statistics
Matches: 169, Mismatches: 26, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
114 5 0.03
115 93 0.55
116 66 0.39
117 5 0.03
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (114 bp):
TGATTCTAACTTTGTAAGGAAAATAAATAATTGAATTTTTTTCCTGACAATCTTGAATGATTCTA
ACTTTGTAAGAAAAAAAATAGTTGAATTAATTTCCTTGAGAATATTAAA
Found at i:415914 original size:173 final size:174
Alignment explanation
Indices: 415604--415941 Score: 452
Period size: 173 Copynumber: 1.9 Consensus size: 174
415594 ATTTATCTCA
* * * *
415604 TCGTTAGAATCTTGTGTTGATTCTAACTTTGGAAGGAAAATAAATCGTTGAATTTATTTCCTAAA
1 TCGTGAGAATCTTGTGATGATTCTAACTTTGGAAGGAAAATAAATAGTTGAATTAATTTCCTAAA
*
415669 CAATCTTAAATGATTCTAACTTTGTAAGTAAAATAAATAGTTGAATTTATTTCCTTGAGAATATT
66 CAATCTTAAATGATTCTAACTTTGTAAGGAAAATAAATAGTTGAATTTATTTCCTTGAGAATATT
* *
415734 AAATGATTCTAACTTTGTAACAAAAATAAATAATTGAATTTGTTT
131 AAATGATTCTAAATTTGTAA-AAAAAAAAATAATTGAATTTGTTT
* *
415779 TCGTGAGAATCTTG-GATGATTCTAACTTTGTAAGGAAAA-AAATAGTT-AGATTCAATTT-CTT
1 TCGTGAGAATCTTGTGATGATTCTAACTTTGGAAGGAAAATAAATAGTTGA-ATT-AATTTCCTA
* * * * *
415840 GAGAATCTTGAATGATTCTAACTTTGTAAGGAAAATAAATAGTTTG-ATTTCTTTCCTTGATAAT
64 AACAATCTTAAATGATTCTAACTTTGTAAGGAAAATAAATAG-TTGAATTTATTTCCTTGAGAAT
* * *
415904 CTTGAATGATTCTAAATTTGTAAAAAAAAAAATCATTG
128 ATTAAATGATTCTAAATTTGTAAAAAAAAAAATAATTG
415942 TTTCGCTTCC
Statistics
Matches: 143, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
172 14 0.10
173 86 0.60
174 30 0.21
175 13 0.09
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (174 bp):
TCGTGAGAATCTTGTGATGATTCTAACTTTGGAAGGAAAATAAATAGTTGAATTAATTTCCTAAA
CAATCTTAAATGATTCTAACTTTGTAAGGAAAATAAATAGTTGAATTTATTTCCTTGAGAATATT
AAATGATTCTAAATTTGTAAAAAAAAAAATAATTGAATTTGTTT
Found at i:416355 original size:18 final size:18
Alignment explanation
Indices: 416332--416369 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
416322 ACTATATTCA
*
416332 TCTTTTTCCCTCTATAGC
1 TCTTTTTCCCTATATAGC
416350 TCTTTTTCCCTATATAGC
1 TCTTTTTCCCTATATAGC
416368 TC
1 TC
416370 AATTTTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.32, G:0.05, T:0.50
Consensus pattern (18 bp):
TCTTTTTCCCTATATAGC
Found at i:420031 original size:19 final size:20
Alignment explanation
Indices: 419995--420032 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
419985 AGGTGGAACA
*
419995 ATTGATAAGTACAAGGATAG
1 ATTGATAAGTAAAAGGATAG
420015 ATTGATAA-TAAAAGGATA
1 ATTGATAAGTAAAAGGATA
420033 TCGACAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (20 bp):
ATTGATAAGTAAAAGGATAG
Found at i:424115 original size:20 final size:20
Alignment explanation
Indices: 424090--424143 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
424080 GAAAGTTGTA
424090 CCGAAGGACCTATGTATATC
1 CCGAAGGACCTATGTATATC
* * *
424110 CCGAAGGATCTCTGTATGTC
1 CCGAAGGACCTATGTATATC
* *
424130 TCGAAAGACCTATG
1 CCGAAGGACCTATG
424144 AACCCTCGAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (20 bp):
CCGAAGGACCTATGTATATC
Found at i:424549 original size:3 final size:3
Alignment explanation
Indices: 424543--424613 Score: 88
Period size: 3 Copynumber: 23.0 Consensus size: 3
424533 TTTTTTAAAT
*
424543 TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** *
424591 ACA TATA TTA TTTA TTA ATA TTA
1 TTA T-TA TTA -TTA TTA TTA TTA
424614 CAAAACCCAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
3 53 0.91
4 5 0.09
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:424655 original size:17 final size:17
Alignment explanation
Indices: 424629--424669 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
424619 CCCAAATCGA
*
424629 GACCCATTTACAAACCC
1 GACCCGTTTACAAACCC
*
424646 GACCCGTTTACAAGCCC
1 GACCCGTTTACAAACCC
*
424663 AACCCGT
1 GACCCGT
424670 ATCCAGCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.29, C:0.41, G:0.12, T:0.17
Consensus pattern (17 bp):
GACCCGTTTACAAACCC
Found at i:426259 original size:22 final size:25
Alignment explanation
Indices: 426228--426275 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
426218 CCTTTTCTGA
*
426228 TATTTCTAAATA-A-ATAAA-TATT
1 TATTTATAAATATATATAAATTATT
426250 TATTTATAAATATATATAAATTATT
1 TATTTATAAATATATATAAATTATT
426275 T
1 T
426276 TTTTCTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 1 0.05
24 5 0.23
25 5 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTTATAAATATATATAAATTATT
Found at i:426792 original size:17 final size:19
Alignment explanation
Indices: 426770--426809 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
426760 TTTTCAAATT
426770 TTTTTATA-TACTTAT-TA
1 TTTTTATAGTACTTATATA
*
426787 TTTTTATAGTATTTATATA
1 TTTTTATAGTACTTATATA
426806 TTTT
1 TTTT
426810 CTTATTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 6 0.30
19 6 0.30
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTATAGTACTTATATA
Found at i:430118 original size:15 final size:15
Alignment explanation
Indices: 430100--430131 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
430090 GATCAATACC
430100 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
430115 TTTTGCATACATTCA
1 TTTTGCATACATGCA
430130 TT
1 TT
430132 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:436535 original size:93 final size:93
Alignment explanation
Indices: 436394--436583 Score: 337
Period size: 93 Copynumber: 2.0 Consensus size: 93
436384 AAGAGACCCA
*
436394 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
436459 TCATTGAATTT-AGAAGATGAATGTGCTC
66 TCATTGAATTTGA-AAGATGAATGTGCTC
436487 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
* *
436552 TCATTGGATTTGAAAGATGAATTTGCTC
66 TCATTGAATTTGAAAGATGAATGTGCTC
436580 ATAG
1 ATAG
436584 TAGAAATAAG
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
93 92 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (93 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
TCATTGAATTTGAAAGATGAATGTGCTC
Found at i:436671 original size:115 final size:114
Alignment explanation
Indices: 436487--436697 Score: 377
Period size: 115 Copynumber: 1.8 Consensus size: 114
436477 GAATGTGCTC
436487 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
* *
436552 TCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAAATAAGGAGACCCA
66 TCATTGAATTTGAAAGAT-AATGTGCTCATAGTAGAAATAAGGAGACCCA
436602 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
* *
436667 TCATTGAATTTGGAAGCTAATGTGCTCATAG
66 TCATTGAATTTGAAAGATAATGTGCTCATAG
436698 CATCTTCTGG
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
114 12 0.13
115 80 0.87
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (114 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
TCATTGAATTTGAAAGATAATGTGCTCATAGTAGAAATAAGGAGACCCA
Found at i:436759 original size:92 final size:93
Alignment explanation
Indices: 436602--436790 Score: 292
Period size: 92 Copynumber: 2.0 Consensus size: 93
436592 AGGAGACCCA
*
436602 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAAACCTAAAAACCAA
* *
436667 TCATTGAATTTGGAAGCT-AATGTGCTC
66 TCATTGAATTTGAAAGATGAATGTGCTC
* *
436694 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACC-ACAGAACCA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAAACCTA-AAAACCA
* *
436758 ATCATTGGATTTGAAAGATGAATTTGCTC
65 ATCATTGAATTTGAAAGATGAATGTGCTC
436787 ATAG
1 ATAG
436791 TAGAAATAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
91 1 0.01
92 75 0.85
93 12 0.14
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (93 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAAACCTAAAAACCAA
TCATTGAATTTGAAAGATGAATGTGCTC
Found at i:436786 original size:207 final size:208
Alignment explanation
Indices: 436374--436862 Score: 883
Period size: 207 Copynumber: 2.4 Consensus size: 208
436364 ATCAGATTCA
*
436374 AGTAGAAATAAAGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
1 AGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
436439 GTATGAACCCTAAAAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAGCATCTTCTGGAAG
66 GTATGAACCCTAAAAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAGCATCTTCTGGAAG
*
436504 TGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAACCCTAAAAACCAATCATTGGATTTGAAAGA
131 TGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAAACCTAAAAACCAATCATTGGATTTGAAAGA
436569 TGAATTTGCTCAT
196 TGAATTTGCTCAT
*
436582 AGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGCTATCTGATCTGGTTTG
1 AGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
* *
436647 GTATGAACCCTAAAAACCAATCATTGAATTTGGAAGCT-AATGTGCTCATAGCATCTTCTGGAAG
66 GTATGAACCCTAAAAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAGCATCTTCTGGAAG
* *
436711 TGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACC-ACAGAACCAATCATTGGATTTGAAAG
131 TGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAAACCTA-AAAACCAATCATTGGATTTGAAAG
436775 ATGAATTTGCTCAT
195 ATGAATTTGCTCAT
436789 AGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
1 AGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
*
436854 GTAGGAACC
66 GTATGAACC
436863 ACATAATTAA
Statistics
Matches: 271, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
206 1 0.00
207 171 0.63
208 99 0.37
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (208 bp):
AGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
GTATGAACCCTAAAAACCAATCATTGAATTTAGAAGATGAATGTGCTCATAGCATCTTCTGGAAG
TGTTCTTTGAGCTATCTGATCTGGTTTGGTATGAAACCTAAAAACCAATCATTGGATTTGAAAGA
TGAATTTGCTCAT
Found at i:437928 original size:113 final size:113
Alignment explanation
Indices: 437590--438266 Score: 717
Period size: 113 Copynumber: 5.9 Consensus size: 113
437580 GATTCAAATC
* * * * *
437590 CATCAATTGGTGGATCAGCATTACCAGATAGAGTTCATAATGAGAAGAACTCATCATCTGAAGAA
1 CATCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAA--C-TCATCTGAAGAA
437655 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACC---T-TTTG-ATT
63 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* * * * * * *
437701 CATTATTTGATGGATTAACATTGCCAGA-AAGAGTTCATAATAAGAAGAACTCATCTAAAGAA-A
1 CATCATTTGATGGATCAGCATTTCCAGAGAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * *
437764 AAGAAGAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGCTTGAATT
65 AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
*
437813 CATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
437878 AGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTTGTTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* **** *
437926 CATCATTTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAATTCATCTGAAGAAGGA
1 CATCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * **
437991 AGAAGAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTGTTCAAATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* * * *
438039 CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTTATCTGAAG-AGGA
1 CATCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* ** **
438103 AGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGCAT-AATT
66 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
** * *
438150 CTATCA-CAGAAGCAGATAAATTAGCATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTC
1 C-ATCATTTGATG--G----A-T--CAGC-A--TTTCCAGAGAAAGTTCATAATGAGAAGAACTC
* * * ** *
438214 ATCTGAAGAAGAAAGAAGAAGTTCAAAATAAGAAGAGCTTATTCAACCTTTTG
53 ATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
438267 AATGACTCTA
Statistics
Matches: 485, Mismatches: 59, Indels: 31
0.84 0.10 0.05
Matches are distributed among these distances:
107 34 0.07
108 11 0.02
109 1 0.00
110 2 0.00
111 50 0.10
112 100 0.21
113 203 0.42
117 1 0.00
118 1 0.00
120 3 0.01
121 1 0.00
123 38 0.08
124 40 0.08
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (113 bp):
CATCATTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
Found at i:438011 original size:24 final size:23
Alignment explanation
Indices: 437968--438012 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
437958 GTTCATAATG
*
437968 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
437991 AGAAGAAGTTCATAATG-AGAAG
1 AGAAGAA-TTCAT-ATGAAGAAG
438013 AACTTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 10 0.53
25 2 0.11
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:438068 original size:226 final size:225
Alignment explanation
Indices: 437582--438142 Score: 740
Period size: 225 Copynumber: 2.5 Consensus size: 225
437572 TTAGCAAAGA
* * * * *
437582 TTCAAATCCATCAATTGGTGGATCAGCATTACCAGATAGAGTTCATAATGAGAAGAACTCATCAT
1 TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAA--C-TCAT
*
437647 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACC---T-TTTGATTCATTATT
63 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGATTCATCATT
*
437708 TGATGGATTAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTCATCTAAAGAAAAAGAAGAAA
128 TGATGGATCAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTCATCTAAAGAAAAAGAAGAAA
* *
437773 TTCATAATGAGAAGAATTTGTTCAACTTTTTGC
193 TTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * *
437806 TT-GAATTCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
1 TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
*
437870 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTTGTTTGAATTCATCATTTG
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTG-ATTCATCATTTG
* * * *** * * * * *
437935 ATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAATTCATCTGAAGAAGGAAGAAGAAGT
130 ATGGATCAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTCATCTAAAGAA-AAAGAAGAAAT
*
438000 TCATAATGAGAAGAACTTGTTTAACCTTTTG-
194 TCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * * *
438031 TTCAAATTCATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTTATCTG
1 TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
* **
438096 AAG-AGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTG
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
438143 CATAATTCTA
Statistics
Matches: 295, Mismatches: 35, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
220 49 0.17
221 1 0.00
223 47 0.16
224 6 0.02
225 96 0.33
226 96 0.33
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (225 bp):
TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGATTCATCATTTGA
TGGATCAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTCATCTAAAGAAAAAGAAGAAATTC
ATAATGAGAAGAACTTGTTCAACCTTTTGC
Found at i:438201 original size:123 final size:124
Alignment explanation
Indices: 438052--438285 Score: 371
Period size: 124 Copynumber: 1.9 Consensus size: 124
438042 CACTTGATGG
* * *
438052 ATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCAC
1 ATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCAA
* * * *
438116 AATGAGAAGAGCTTGTTCAACCTTTTGCATAATTCTATCACAGAAGCAGATAAATTAGC
66 AATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAGATAAATTAGC
* *
438175 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCAA
1 ATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCAA
*
438240 AATAAGAAGAGCTTATTCAACCTTTTGAATGACTCTATCACAGAAG
66 AATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAG
438286 GAAATAGGTC
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
123 44 0.44
124 56 0.56
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (124 bp):
ATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCAA
AATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAGATAAATTAGC
Found at i:438302 original size:124 final size:123
Alignment explanation
Indices: 438052--438332 Score: 352
Period size: 124 Copynumber: 2.3 Consensus size: 123
438042 CACTTGATGG
* * * * *
438052 ATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCACA
1 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGAAAGAAGAAGTTCAAA
* * * * * * *
438117 ATGAGAAGAGCTTGTTCAACCTTTTGCATAATTCTATCACAGAAGCAGATAAATTAGC
66 ATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAAATCAAC
438175 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCAA
1 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGAAAGAAGAAGTTCAA
* * **
438240 AATAAGAAGAGCTTATTCAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCAAC
65 AATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAAATCAAC
* *
438299 ATCATCC---CCAGCGGAAAAGTTCATAATGAGAAGA
1 ATCAACCTTTCCAG-AG-AAAGTTCATAATGAGAAGA
438333 GCTAATCCCA
Statistics
Matches: 137, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
121 4 0.03
122 1 0.01
123 63 0.46
124 69 0.50
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.23
Consensus pattern (123 bp):
ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGAAAGAAGAAGTTCAAA
ATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAAATCAAC
Found at i:438498 original size:3 final size:3
Alignment explanation
Indices: 438492--438541 Score: 55
Period size: 3 Copynumber: 16.0 Consensus size: 3
438482 ATTTTTAAAT
** *
438492 TTA TTA TTA TTA TTA TTA TTA TTA TTA ACA TATA TTA TTTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA TTA
438539 TTA
1 TTA
438542 CAAAACCCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 34 0.87
4 5 0.13
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:438583 original size:17 final size:17
Alignment explanation
Indices: 438557--438596 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
438547 CCCAAATCGA
*
438557 GACCCATTTACAAACCC
1 GACCCGTTTACAAACCC
*
438574 GACCCGTTTACAAGCCC
1 GACCCGTTTACAAACCC
*
438591 AACCCG
1 GACCCG
438597 GATCTAGCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.42, G:0.12, T:0.15
Consensus pattern (17 bp):
GACCCGTTTACAAACCC
Found at i:439978 original size:13 final size:13
Alignment explanation
Indices: 439960--440002 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
439950 AATAATAATT
439960 TATATTTTTTCAA
1 TATATTTTTTCAA
439973 TATATTATTTT-AA
1 TATATT-TTTTCAA
*
439986 TATTTATTTTTCAA
1 TATAT-TTTTTCAA
440000 TAT
1 TAT
440003 CGAAGAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (13 bp):
TATATTTTTTCAA
Found at i:440001 original size:14 final size:15
Alignment explanation
Indices: 439965--440002 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
439955 TAATTTATAT
439965 TTTTTCAATATATTA
1 TTTTTCAATATATTA
439980 -TTTT-AATAT-TTA
1 TTTTTCAATATATTA
439992 TTTTTCAATAT
1 TTTTTCAATAT
440003 CGAAGAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 9 0.43
14 9 0.43
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTTCAATATATTA
Found at i:445720 original size:20 final size:20
Alignment explanation
Indices: 445695--445748 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
445685 GAAAGTTGTT
445695 CCGAAGGACCTATGTATATC
1 CCGAAGGACCTATGTATATC
* * *
445715 CCGAAGGATCTCTGTATGTC
1 CCGAAGGACCTATGTATATC
* *
445735 TCGAAAGACCTATG
1 CCGAAGGACCTATG
445749 AACCCTCAAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (20 bp):
CCGAAGGACCTATGTATATC
Found at i:448461 original size:45 final size:45
Alignment explanation
Indices: 448390--448537 Score: 198
Period size: 45 Copynumber: 3.3 Consensus size: 45
448380 TACACAGGCA
*
448390 GCCCTATGCCCTAGCTTCCGTCACCATGAA-CCACCGAGAAGGATT
1 GCCCTAGGCCCTAGCTTCCGTCACCAT-AAGCCACCGAGAAGGATT
* * *
448435 GTCCTAGGCCCTAGCTTCCGTCACCATAAGCCACCGACAAGGATA
1 GCCCTAGGCCCTAGCTTCCGTCACCATAAGCCACCGAGAAGGATT
448480 GCCCTAGGCCCCTAGCTT-C--CACCATAAGCCACCGAGAAGG-TT
1 GCCCTAGG-CCCTAGCTTCCGTCACCATAAGCCACCGAGAAGGATT
448522 AGCCCTAGGCCCTAGC
1 -GCCCTAGGCCCTAGC
448538 ACCAAGAAGA
Statistics
Matches: 93, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
42 8 0.09
43 28 0.30
44 2 0.02
45 46 0.49
46 9 0.10
ACGTcount: A:0.24, C:0.37, G:0.21, T:0.18
Consensus pattern (45 bp):
GCCCTAGGCCCTAGCTTCCGTCACCATAAGCCACCGAGAAGGATT
Found at i:449155 original size:2 final size:2
Alignment explanation
Indices: 449150--449192 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
449140 TTCATATAAG
449150 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
449192 A
1 A
449193 ACATGCATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:449487 original size:2 final size:2
Alignment explanation
Indices: 449480--449508 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
449470 AAATATGAAG
449480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
449509 CATGGTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:452517 original size:29 final size:29
Alignment explanation
Indices: 452474--452556 Score: 130
Period size: 29 Copynumber: 2.8 Consensus size: 29
452464 CTCACCTAAC
*
452474 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
452504 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
452533 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
452557 ATTTAGTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 45 0.92
30 4 0.08
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:455944 original size:15 final size:15
Alignment explanation
Indices: 455924--455953 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
455914 CTTTCTCATA
455924 GTTGTTGTTGGAATT
1 GTTGTTGTTGGAATT
*
455939 GTTGTTGTTGTAATT
1 GTTGTTGTTGGAATT
455954 CCAGCCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
GTTGTTGTTGGAATT
Found at i:457288 original size:29 final size:29
Alignment explanation
Indices: 457241--457321 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 29
457231 CTCACCTAAC
*
457241 TAAATTGATGTAAGCAATGACATCATTACT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
* * *
457271 TATATGATGTAAACAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
457300 TAAATGATGTAAGTAATGACAT
1 TAAATGATGTAAGCAATGACAT
457322 TAATTTATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 41 0.93
30 3 0.07
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.35
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:474699 original size:26 final size:26
Alignment explanation
Indices: 474670--474750 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
474660 AATGACGCTC
* *
474670 AATGAGCATCATAAATGCACGTCGTA
1 AATGAGTATCATAAATGCACGTCATA
* * * *
474696 AATGTGTGTCATAAATACGCGTCATA
1 AATGAGTATCATAAATGCACGTCATA
*
474722 AAT-ATGTATCATAAATGCACATCATA
1 AATGA-GTATCATAAATGCACGTCATA
474748 AAT
1 AAT
474751 TTATGACGCA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (26 bp):
AATGAGTATCATAAATGCACGTCATA
Found at i:474710 original size:13 final size:13
Alignment explanation
Indices: 474694--474737 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
474684 ATGCACGTCG
*
474694 TAAATGTGTGTCA
1 TAAATATGTGTCA
* *
474707 TAAATACGCGTCA
1 TAAATATGTGTCA
*
474720 TAAATATGTATCA
1 TAAATATGTGTCA
474733 TAAAT
1 TAAAT
474738 GCACATCATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (13 bp):
TAAATATGTGTCA
Found at i:477175 original size:6 final size:6
Alignment explanation
Indices: 477160--477195 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
477150 GCAGAACATT
* *
477160 AATGTA AATGCC AATGCA AATGCA AATGCA AATGCA
1 AATGCA AATGCA AATGCA AATGCA AATGCA AATGCA
477196 TGTATGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
AATGCA
Found at i:478078 original size:13 final size:13
Alignment explanation
Indices: 478060--478085 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
478050 GTCATAAATC
478060 TATGACGCGCATT
1 TATGACGCGCATT
478073 TATGACGCGCATT
1 TATGACGCGCATT
478086 GCGCGTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:478193 original size:85 final size:85
Alignment explanation
Indices: 478035--478219 Score: 185
Period size: 85 Copynumber: 2.2 Consensus size: 85
478025 AATCTCAGAT
* * * * * *
478035 GACACGCAATTGTGCGTCATAAATCTATGACGCGCATTTATGACGCGCATTGCGCGTCATTGAGG
1 GACACACATTTGTGTGTCATAAATCTATGACACGCATTTATGACGCACATTGCGCGTCATTGAAG
** *
478100 CCCCCGTCA-TA-AATGAAGAC
66 AACACGTCATTAGAA--AAGAC
* * ** * *
478120 GACACACATTTGTGTGTCATAAATTTATGACACGTATTTATGACTTATATTGCGTGTCATTGAAG
1 GACACACATTTGTGTGTCATAAATCTATGACACGCATTTATGACGCACATTGCGCGTCATTGAAG
*
478185 AACACGTCATTAGAAAAGAT
66 AACACGTCATTAGAAAAGAC
*
478205 GACACACATTCGTGT
1 GACACACATTTGTGT
478220 ATCGTGATTG
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
85 77 0.95
86 2 0.02
87 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (85 bp):
GACACACATTTGTGTGTCATAAATCTATGACACGCATTTATGACGCACATTGCGCGTCATTGAAG
AACACGTCATTAGAAAAGAC
Found at i:481056 original size:22 final size:23
Alignment explanation
Indices: 481017--481062 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
481007 TGTTTTGGGC
481017 GAATTTTCTCTTGTGAATCGTCT
1 GAATTTTCTCTTGTGAATCGTCT
481040 GAATTTTCTC-TGTGAATCGTCT
1 GAATTTTCTCTTGTGAATCGTCT
481062 G
1 G
481063 TCGGAGCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (23 bp):
GAATTTTCTCTTGTGAATCGTCT
Found at i:482046 original size:186 final size:185
Alignment explanation
Indices: 481733--482103 Score: 733
Period size: 186 Copynumber: 2.0 Consensus size: 185
481723 TGATTACAGG
481733 AGTTTTACCAATTGGTCGCCCGGAACGATTATTTGAGACGGAGGAGCAGATGGTGGCACGATATT
1 AGTTTTACCAATTGGTCGCCCGGAACGATTATTTGAGACGGAGGAGCAGATGGTGGCACGATATT
481798 TGGGGGGTTTACGCCAGCCCTTGCAAGATGTCCTCAGCCTTCATTCACTGTGGAGTGTTTCGGAA
66 TGGGGGGTTTACGCCAGCCCTTGCAAGATGTCCTCAGCCTTCATTCACTGTGGAGTGTTTCGGAA
481863 GCATACCAGCGTGCACTTACTGTTGAAAAATAGCAAAACAGGAGACCAGTGATCA
131 GCATACCAGCGTGCACTTACTGTTGAAAAATAGCAAAACAGGAGACCAGTGATCA
481918 AGTTTTACCAATTGGTCGCCCGGAACGATTTATTTGAGACGGAGGAGCAGATGGTGGCACGATAT
1 AGTTTTACCAATTGGTCGCCCGGAACGA-TTATTTGAGACGGAGGAGCAGATGGTGGCACGATAT
481983 TTGGGGGGTTTACGCCAGCCCTTGCAAGATGTCCTCAGCCTTCATTCACTGTGGAGTGTTTCGGA
65 TTGGGGGGTTTACGCCAGCCCTTGCAAGATGTCCTCAGCCTTCATTCACTGTGGAGTGTTTCGGA
482048 AGCATACCAGCGTGCACTTACTGTTGAAAAATAGCAAAACAGGAGACCAGTGATCA
130 AGCATACCAGCGTGCACTTACTGTTGAAAAATAGCAAAACAGGAGACCAGTGATCA
482104 GGAGCGATCA
Statistics
Matches: 185, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
185 28 0.15
186 157 0.85
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (185 bp):
AGTTTTACCAATTGGTCGCCCGGAACGATTATTTGAGACGGAGGAGCAGATGGTGGCACGATATT
TGGGGGGTTTACGCCAGCCCTTGCAAGATGTCCTCAGCCTTCATTCACTGTGGAGTGTTTCGGAA
GCATACCAGCGTGCACTTACTGTTGAAAAATAGCAAAACAGGAGACCAGTGATCA
Found at i:491004 original size:2 final size:2
Alignment explanation
Indices: 490997--491040 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
490987 TTTATTGTAT
490997 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A- AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
491038 AC A
1 AC A
491041 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:491045 original size:2 final size:2
Alignment explanation
Indices: 491040--491069 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
491030 ACACACACAC
491040 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
491070 TCTGGGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:498315 original size:26 final size:27
Alignment explanation
Indices: 498286--498339 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
498276 GTAAAAAACA
498286 AAAATTATTAATAT-ATATAATAAAAT
1 AAAATTATTAATATCATATAATAAAAT
* * *
498312 AAAATTATTATTATCATTTGATAAAAT
1 AAAATTATTAATATCATATAATAAAAT
498339 A
1 A
498340 TATGATTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
AAAATTATTAATATCATATAATAAAAT
Found at i:499419 original size:20 final size:20
Alignment explanation
Indices: 499383--499420 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
499373 ATCTTATTCC
*
499383 CTGATAATCTAATATTCTCA
1 CTGATAATCTAACATTCTCA
*
499403 CTGATAATCTTACATTCT
1 CTGATAATCTAACATTCT
499421 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (20 bp):
CTGATAATCTAACATTCTCA
Found at i:501221 original size:29 final size:30
Alignment explanation
Indices: 501181--501248 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
501171 AGTTGAAAAG
*
501181 AAAA-AATAAAATAA-ATAATTATAA-TTTA
1 AAAATAATAAAATAATA-AATAATAATTTTA
501209 AAAATAATAAAATAATAAATAATAATTTTA
1 AAAATAATAAAATAATAAATAATAATTTTA
*
501239 AAGATAATAA
1 AAAATAATAA
501249 TAAAGATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 4 0.11
29 17 0.49
30 14 0.40
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (30 bp):
AAAATAATAAAATAATAAATAATAATTTTA
Found at i:503027 original size:27 final size:27
Alignment explanation
Indices: 502997--503049 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
502987 ATCTTTTTCC
502997 TTTTTTT-TGATGTTCGAAACAATGAA
1 TTTTTTTATGATGTTCGAAACAATGAA
*
503023 TTTTTTTATGTTGTTCGAAACAATGAA
1 TTTTTTTATGATGTTCGAAACAATGAA
503050 CAATTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (27 bp):
TTTTTTTATGATGTTCGAAACAATGAA
Found at i:505233 original size:12 final size:12
Alignment explanation
Indices: 505216--505243 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
505206 GTCAAAGGAA
505216 GTCAACGGTCGG
1 GTCAACGGTCGG
505228 GTCAACGGTCGG
1 GTCAACGGTCGG
505240 GTCA
1 GTCA
505244 GACCGGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.25, G:0.39, T:0.18
Consensus pattern (12 bp):
GTCAACGGTCGG
Found at i:505272 original size:19 final size:19
Alignment explanation
Indices: 505245--505315 Score: 99
Period size: 19 Copynumber: 3.7 Consensus size: 19
505235 GTCGGGTCAG
*
505245 ACCGGTCAAACCGGTTCGT
1 ACCGGTCAAACCGGTTCGA
*
505264 ACCGATCAAACCGGTTCGA
1 ACCGGTCAAACCGGTTCGA
505283 ACCGGTCTAAACCGG-TCAGA
1 ACCGGTC-AAACCGGTTC-GA
505303 ACCGGTCAAACCG
1 ACCGGTCAAACCG
505316 ATTTCCAGCC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
19 31 0.66
20 16 0.34
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.15
Consensus pattern (19 bp):
ACCGGTCAAACCGGTTCGA
Found at i:505295 original size:10 final size:9
Alignment explanation
Indices: 505239--505315 Score: 73
Period size: 10 Copynumber: 8.1 Consensus size: 9
505229 TCAACGGTCG
*
505239 GGTCAGACC
1 GGTCAAACC
505248 GGTCAAACC
1 GGTCAAACC
**
505257 GGTTCGTACC
1 GG-TCAAACC
*
505267 GATCAAACC
1 GGTCAAACC
*
505276 GGTTCGAACC
1 GG-TCAAACC
505286 GGTCTAAACC
1 GGTC-AAACC
505296 GGTCAGAACC
1 GGTCA-AACC
505306 GGTCAAACC
1 GGTCAAACC
505315 G
1 G
505316 ATTTCCAGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
9 24 0.44
10 31 0.56
ACGTcount: A:0.27, C:0.31, G:0.26, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:512413 original size:10 final size:9
Alignment explanation
Indices: 512383--512470 Score: 68
Period size: 10 Copynumber: 9.1 Consensus size: 9
512373 AGTCGGGTCG
*
512383 GGTCAGACC
1 GGTCAAACC
512392 GGTCAAACC
1 GGTCAAACC
*
512401 GGTTCATACC
1 GG-TCAAACC
512411 GGTCAAACC
1 GGTCAAACC
*
512420 GGTTCGAACC
1 GG-TCAAACC
*
512430 GATCGAAACC
1 GGTC-AAACC
*
512440 GGTCAGAATC
1 GGTCA-AACC
*
512450 GGTTGAAAACC
1 GG-T-CAAACC
512461 GGTCAAACC
1 GGTCAAACC
512470 G
1 G
512471 ATTTCTAGCC
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
9 27 0.44
10 28 0.45
11 6 0.10
12 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:512413 original size:19 final size:19
Alignment explanation
Indices: 512389--512442 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
512379 GTCGGGTCAG
512389 ACCGGTCAAACCGGTTC-A
1 ACCGGTCAAACCGGTTCGA
512407 TACCGGTCAAACCGGTTCGA
1 -ACCGGTCAAACCGGTTCGA
*
512427 ACCGATCGAAACCGGT
1 ACCGGTC-AAACCGGT
512443 CAGAATCGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 23 0.72
20 9 0.28
ACGTcount: A:0.28, C:0.31, G:0.24, T:0.17
Consensus pattern (19 bp):
ACCGGTCAAACCGGTTCGA
Found at i:515438 original size:4 final size:5
Alignment explanation
Indices: 515405--515525 Score: 61
Period size: 5 Copynumber: 23.8 Consensus size: 5
515395 TGTTCAGAGA
* *
515405 AAAAT AAAAT AAAAT -AAAT CATAAT AAAAT -AAAT -AAAT AAAAT AAAGT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
**** * * *
515453 TTGTT AAAAAT AAAACA AAAAC AAAAT AAAAT -AAAT CAAAAAC AAAAT
1 AAAAT -AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT --AAAAT AAAAT
* *
515501 GAAAAT AAAAT GAAAT AAAAC AAAA
1 -AAAAT AAAAT AAAAT AAAAT AAAA
515526 ATATAACGAA
Statistics
Matches: 88, Mismatches: 19, Indels: 18
0.70 0.15 0.14
Matches are distributed among these distances:
4 16 0.18
5 56 0.64
6 13 0.15
7 3 0.03
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:515483 original size:21 final size:22
Alignment explanation
Indices: 515459--515510 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 22
515449 AAGTTTGTTA
515459 AAAATAAAACAAAAACAAAAT-
1 AAAATAAAACAAAAACAAAATG
*
515480 AAAATAAATCAAAAACAAAATG
1 AAAATAAAACAAAAACAAAATG
515502 AAAATAAAA
1 AAAATAAAA
515511 TGAAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.79, C:0.08, G:0.02, T:0.12
Consensus pattern (22 bp):
AAAATAAAACAAAAACAAAATG
Found at i:515487 original size:27 final size:27
Alignment explanation
Indices: 515457--515526 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
515447 TAAAGTTTGT
515457 TAAAAATAAAACAAAAACAAAATAAAA
1 TAAAAATAAAACAAAAACAAAATAAAA
* **
515484 TAAATCA-AAAACAAAATGAAAATAAAA
1 TAAA-AATAAAACAAAAACAAAATAAAA
*
515511 T-GAAATAAAACAAAAA
1 TAAAAATAAAACAAAAA
515527 TATAACGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.03
26 10 0.29
27 23 0.66
28 1 0.03
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (27 bp):
TAAAAATAAAACAAAAACAAAATAAAA
Found at i:515494 original size:16 final size:16
Alignment explanation
Indices: 515410--515528 Score: 57
Period size: 16 Copynumber: 7.4 Consensus size: 16
515400 AGAGAAAAAT
515410 AAAATAAAATAAATC-
1 AAAATAAAATAAATCA
* *
515425 ATAATAAAATAAATAAA
1 AAAATAAAATAAAT-CA
* *** *
515442 TAAAATAAAGTTTGTTA
1 -AAAATAAAATAAATCA
* *
515459 AAAATAAAACAAA-AA
1 AAAATAAAATAAATCA
515474 CAAAATAAAATAAATCA
1 -AAAATAAAATAAATCA
*
515491 AAAACAAAATGAAA--A
1 AAAATAAAAT-AAATCA
* *
515506 TAAAATGAAATAAAACA
1 -AAAATAAAATAAATCA
515523 AAAATA
1 AAAATA
515529 TAACGAAATG
Statistics
Matches: 75, Mismatches: 20, Indels: 17
0.67 0.18 0.15
Matches are distributed among these distances:
15 18 0.24
16 42 0.56
17 6 0.08
18 9 0.12
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAATAAAATAAATCA
Found at i:515527 original size:11 final size:11
Alignment explanation
Indices: 515458--515528 Score: 56
Period size: 11 Copynumber: 6.6 Consensus size: 11
515448 AAAGTTTGTT
515458 AAAAATAAAAC
1 AAAAATAAAAC
*
515469 AAAAACAAAA-
1 AAAAATAAAAC
* *
515479 TAAAATAAATC
1 AAAAATAAAAC
* *
515490 AAAAACAAAAT
1 AAAAATAAAAC
*
515501 GAAAATAAAA-
1 AAAAATAAAAC
**
515511 TGAAATAAAAC
1 AAAAATAAAAC
515522 AAAAATA
1 AAAAATA
515529 TAACGAAATG
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
10 15 0.34
11 29 0.66
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAAATAAAAC
Found at i:521492 original size:83 final size:84
Alignment explanation
Indices: 521347--521501 Score: 208
Period size: 83 Copynumber: 1.9 Consensus size: 84
521337 AGATAATTCC
* * * *
521347 TTAAAATAATATCTTAAATCCTAATTAAAACACTTAAAACTATTTAATCTAAAATTTCT-AAAAC
1 TTAAAATAATATCCTAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATTACTAAAAAA
521411 AAGATAAGATAAATACTAT
66 AAGATAAGATAAATACTAT
* * *
521430 TTAAAATAATATCCTAAATCCTAATTGAAATAC-TAACATCTATTTAAACTAAAA-TACGTAAAA
1 TTAAAATAATATCCTAAATCCTAATTAAAACACTTAA-AACTATTTAAACTAAAATTAC-TAAAA
521493 AAAAGATAA
64 AAAAGATAA
521502 ATATAATGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
82 5 0.08
83 46 0.74
84 11 0.18
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (84 bp):
TTAAAATAATATCCTAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATTACTAAAAAA
AAGATAAGATAAATACTAT
Found at i:522134 original size:12 final size:12
Alignment explanation
Indices: 522117--522147 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
522107 AATATACATT
522117 GCAGGAGAAGGA
1 GCAGGAGAAGGA
522129 GCAGGAGAAGGA
1 GCAGGAGAAGGA
*
522141 GAAGGAG
1 GCAGGAG
522148 CTCAAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.52, T:0.00
Consensus pattern (12 bp):
GCAGGAGAAGGA
Found at i:529964 original size:20 final size:20
Alignment explanation
Indices: 529939--529984 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
529929 TATTGGAATC
529939 CATACATTCCATAGGAAATT
1 CATACATTCCATAGGAAATT
529959 CATACATTCCATAGGAAATT
1 CATACATTCCATAGGAAATT
*
529979 CTTACA
1 CATACA
529985 ATGCATGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (20 bp):
CATACATTCCATAGGAAATT
Found at i:530126 original size:59 final size:59
Alignment explanation
Indices: 530063--530174 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 59
530053 CTTCCCCTTT
* * *
530063 CATTTTAGCACACGAAGTGCCCTAT-TAAAAAATTCTTACCATTAGTATGATTTTGTTAC
1 CATTTTAGCACACAAAATGCCCTATGT-AAAAATTCATACCATTAGTATGATTTTGTTAC
* * *
530122 CATTTTAGCACATAAAATGCCCTATGTGAAAATTCATATCATTAGTATGATTT
1 CATTTTAGCACACAAAATGCCCTATGTAAAAATTCATACCATTAGTATGATTT
530175 CCTTATCTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 45 0.98
60 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.38
Consensus pattern (59 bp):
CATTTTAGCACACAAAATGCCCTATGTAAAAATTCATACCATTAGTATGATTTTGTTAC
Found at i:530262 original size:118 final size:117
Alignment explanation
Indices: 530122--530372 Score: 344
Period size: 117 Copynumber: 2.1 Consensus size: 117
530112 ATTTTGTTAC
* * *
530122 CATTTTAGCACATAAAATGCCCTATGTGAAAATTCATATCATT-AGTATGATTTCCTTATCTATG
1 CATTTTAGCACATAAAATGCCCTATCTGAAAATCCATAT-ATTCAATATGATTTCCTTATC-ATG
* ** *
530186 TAGCACTCTTAGTGCTTTATCTGGAAATCCATACACTCAGTATGA-TTCCATAA
64 TAGCACACTTAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCATAA
* * *
530239 CAATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCATTT
1 C-ATTTTAGCACATAAAATGCCCTATCTGAAAATCCATATATTCAATATGATTTCCTTATCATGT
* * *
530304 AGCACACTTAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTAT
65 AGCACACTTAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCATAA
530357 CATTTTAGCACATAAA
1 CATTTTAGCACATAAA
530373 GTTCCATTCG
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
117 60 0.51
118 58 0.49
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (117 bp):
CATTTTAGCACATAAAATGCCCTATCTGAAAATCCATATATTCAATATGATTTCCTTATCATGTA
GCACACTTAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCATAA
Found at i:530347 original size:58 final size:60
Alignment explanation
Indices: 530165--530368 Score: 206
Period size: 58 Copynumber: 3.5 Consensus size: 60
530155 TCATATCATT
* * * **
530165 AGTATGATTTCCTTATCTA-TGTAGCACTCTTAGTGCTTTATCTGGAAATCCATACACTC
1 AGTATGATTTCCTTATCAATTTTAGCACACTTAGTGCTCCATCTGGAAATCCATACACTC
* * * * ***
530224 AGTATGA-TTCCATAACAATTTTAGCACA-TAAAATGC-CCTATCTGGAAATCCATATTTTC
1 AGTATGATTTCCTTATCAATTTTAGCACACT-TAGTGCTCC-ATCTGGAAATCCATACACTC
* * *
530283 AATATGATTTCCTTATC-A-TTTAGCACACTTAGTGCTCCATATGGAAATCTATACACTC
1 AGTATGATTTCCTTATCAATTTTAGCACACTTAGTGCTCCATCTGGAAATCCATACACTC
530341 AGTATGATTTCCTTATC-ATTTTAGCACA
1 AGTATGATTTCCTTATCAATTTTAGCACA
530369 TAAAGTTCCA
Statistics
Matches: 115, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
58 54 0.47
59 54 0.47
60 7 0.06
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (60 bp):
AGTATGATTTCCTTATCAATTTTAGCACACTTAGTGCTCCATCTGGAAATCCATACACTC
Found at i:530362 original size:117 final size:118
Alignment explanation
Indices: 530106--530372 Score: 351
Period size: 118 Copynumber: 2.3 Consensus size: 118
530096 TCTTACCATT
** * * * *
530106 AGTATGATTTTGTTACCATTTTAGCACATAAAATGCCCTATGTGAAAATTCATATCATTAGTATG
1 AGTATGATTTCCTTAACATTTTAGCACATAAAATGCCCTATCTGAAAATCCATATCATTAATATG
* ** *
530171 ATTTCCTTATCTATGTAGCACTCTTAGTGCTTTATCTGGAAATCCATACACTC
66 ATTTCCTTATCTATGTAGCACACTTAGTGCTCCATATGGAAATCCATACACTC
* * *
530224 AGTATGA-TTCCATAACAATTTTAGCACATAAAATGCCCTATCTGGAAATCCATAT-TTTCAATA
1 AGTATGATTTCCTTAAC-ATTTTAGCACATAAAATGCCCTATCTGAAAATCCATATCATT-AATA
* *
530287 TGATTTCCTTATC-ATTTAGCACACTTAGTGCTCCATATGGAAATCTATACACTC
64 TGATTTCCTTATCTATGTAGCACACTTAGTGCTCCATATGGAAATCCATACACTC
*
530341 AGTATGATTTCCTTATCATTTTAGCACATAAA
1 AGTATGATTTCCTTAACATTTTAGCACATAAA
530373 GTTCCATTCG
Statistics
Matches: 129, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
117 64 0.50
118 65 0.50
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.37
Consensus pattern (118 bp):
AGTATGATTTCCTTAACATTTTAGCACATAAAATGCCCTATCTGAAAATCCATATCATTAATATG
ATTTCCTTATCTATGTAGCACACTTAGTGCTCCATATGGAAATCCATACACTC
Found at i:536563 original size:21 final size:21
Alignment explanation
Indices: 536537--536576 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
536527 AAAAATGTGT
536537 ATCGATGCACTGCTACAGTGC
1 ATCGATGCACTGCTACAGTGC
536558 ATCGATGCACTGCTACAGT
1 ATCGATGCACTGCTACAGT
536577 ACTAATGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (21 bp):
ATCGATGCACTGCTACAGTGC
Found at i:536941 original size:17 final size:18
Alignment explanation
Indices: 536905--536943 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
536895 TTATATTCTG
*
536905 ATATTTAATCTCCAAGGA
1 ATATTTAATCTCCAACGA
*
536923 ATATTTAGT-TCCAACGA
1 ATATTTAATCTCCAACGA
536940 ATAT
1 ATAT
536944 ACTACAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (18 bp):
ATATTTAATCTCCAACGA
Found at i:537166 original size:59 final size:59
Alignment explanation
Indices: 537103--537245 Score: 162
Period size: 59 Copynumber: 2.4 Consensus size: 59
537093 CTTCTCATTT
* * * * ***
537103 CATTTTAGCACACGAAGTGCCCTAT-TCAAAAATTCATACCATTAATATGATTTTGTTAC
1 CATTTTAGCACACAAAATACCCTATGT-AAAAATTCATAACATTAATATGATTCCCTTAC
* * *
537162 CATTTTAGCACATAAAATATCCTATGTGAAAATTCATAACATTAATATGATTCCCTTAC
1 CATTTTAGCACACAAAATACCCTATGTAAAAATTCATAACATTAATATGATTCCCTTAC
* *
537221 CATTTTAGCACATAAAATGCCCTAT
1 CATTTTAGCACACAAAATACCCTAT
537246 CTAGAAATCC
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
59 70 0.99
60 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.35
Consensus pattern (59 bp):
CATTTTAGCACACAAAATACCCTATGTAAAAATTCATAACATTAATATGATTCCCTTAC
Found at i:537284 original size:59 final size:59
Alignment explanation
Indices: 537131--537258 Score: 159
Period size: 59 Copynumber: 2.2 Consensus size: 59
537121 GCCCTATTCA
* * *** * *
537131 AAAATTCATACCATTAATATGATTTTGTTACCATTTTAGCACATAAAATATCCTATGTG
1 AAAATCCATAACATTAATATGATTCCCTTACCATTTTAGCACATAAAATACCCTATCTG
* *
537190 AAAATTCATAACATTAATATGATTCCCTTACCATTTTAGCACATAAAATGCCCTATCT-
1 AAAATCCATAACATTAATATGATTCCCTTACCATTTTAGCACATAAAATACCCTATCTG
537248 AGAAATCCATA
1 A-AAATCCATA
537259 TTTTCAATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 1 0.02
59 59 0.98
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.35
Consensus pattern (59 bp):
AAAATCCATAACATTAATATGATTCCCTTACCATTTTAGCACATAAAATACCCTATCTG
Found at i:537377 original size:59 final size:57
Alignment explanation
Indices: 537203--537358 Score: 152
Period size: 58 Copynumber: 2.7 Consensus size: 57
537193 ATTCATAACA
* * * * * * * **
537203 TTAATATGATTCCCTTACCATTTTAGCACATAAAATGCCCTATCTAGAAATCCATA-TT
1 TTAATATGATTTCCTTATCA-TTTAGCACACAAAGTGCCC-ATATGGAAATCTATACAC
* **
537261 TTCAATATTATTTCCTTATCATTTAGCACACTCAGTGCTCCATATGGAAATCTATACAC
1 TT-AATATGATTTCCTTATCATTTAGCACACAAAGTGC-CCATATGGAAATCTATACAC
537320 TTAATATGATTTCCTTATCATTTTAGCACACAAAGTGCC
1 TTAATATGATTTCCTTATCA-TTTAGCACACAAAGTGCC
537359 ATTCGGTAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
58 45 0.57
59 34 0.43
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.37
Consensus pattern (57 bp):
TTAATATGATTTCCTTATCATTTAGCACACAAAGTGCCCATATGGAAATCTATACAC
Found at i:540380 original size:184 final size:184
Alignment explanation
Indices: 540090--540445 Score: 583
Period size: 184 Copynumber: 1.9 Consensus size: 184
540080 ATTAAATTTG
*
540090 AAATATAAAATATATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATAA
1 AAATATAAAATATATTATATATAACATATGGACTCAACCCAAACCATTTAAAACCCAATTAATAA
* *
540155 TTTAAGATCCAATAAATTTTAAATCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
66 TTTAAGATCCAACAAATTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
540220 TTATTTTATAATTATATATTATTTAAATTA-AT-TGTAAATTTTATTTGAATTAAA
131 TTATTTTATAATTATATATTATTT-AATTATATAT-TAAATTTTATTTGAATTAAA
* * *
540274 AAATATTAAATATGTTATATATAACATATGGACTCAGA-CCAAACCATTTAACACCCAATTAATA
1 AAATATAAAATATATTATATATAACATATGGACTCA-ACCCAAACCATTTAAAACCCAATTAATA
* *
540338 ATTTAAGATCCAACAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAATTT
65 ATTTAAGATCCAACAAATTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATT
*
540403 TTTATTTTATACTTATATATTATTTAATTATATATTAAATTTT
130 TTTATTTTATAATTATATATTATTTAATTATATATTAAATTTT
540446 CGAAAAAGAG
Statistics
Matches: 160, Mismatches: 9, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
183 5 0.03
184 153 0.96
185 2 0.01
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (184 bp):
AAATATAAAATATATTATATATAACATATGGACTCAACCCAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAACAAATTTTAAACCTAAATCAATATTAATTAATTAAAAAATTTATATAAAATTT
TTATTTTATAATTATATATTATTTAATTATATATTAAATTTTATTTGAATTAAA
Found at i:541778 original size:27 final size:24
Alignment explanation
Indices: 541720--541771 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
541710 TTAACTTTGA
*
541720 ATATATTTCAAATTATATACTTTT
1 ATATATTTCAAATTATATAATTTT
*
541744 GTATATTTCAAATTAATATAATATTT
1 ATATATTTCAAATT-ATATAAT-TTT
541770 AT
1 AT
541772 TTAATTTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 13 0.57
25 6 0.26
26 4 0.17
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (24 bp):
ATATATTTCAAATTATATAATTTT
Found at i:544306 original size:85 final size:85
Alignment explanation
Indices: 544197--544353 Score: 219
Period size: 85 Copynumber: 1.8 Consensus size: 85
544187 AGATAATTCC
* * *
544197 TTAAAATAATATCTTAAATCCTAATTAAAACACTTAA-AACTATTTAATCTAAAATTTC-TAAAA
1 TTAAAATAATATCCTAAATCCTAATTAAAACAC-TAACAACTATTTAAACTAAAA-TACGTAAAA
*
544260 CAAAGATAAGATAAAATACTAT
64 AAAAGATAAGATAAAATACTAT
* * *
544282 TTAAAATAATATCCTAAATCCTAATTGAAATACTAACATCTATTTAAACTAAAATACGTAAAAAA
1 TTAAAATAATATCCTAAATCCTAATTAAAACACTAACAACTATTTAAACTAAAATACGTAAAAAA
544347 AAGATAA
66 AAGATAA
544354 AATATAATGT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
84 5 0.08
85 58 0.92
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.31
Consensus pattern (85 bp):
TTAAAATAATATCCTAAATCCTAATTAAAACACTAACAACTATTTAAACTAAAATACGTAAAAAA
AAGATAAGATAAAATACTAT
Found at i:545013 original size:12 final size:12
Alignment explanation
Indices: 544998--545028 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
544988 TATACCCATT
544998 GCAGGAGAAGGA
1 GCAGGAGAAGGA
545010 GCAGGAGAAGGA
1 GCAGGAGAAGGA
*
545022 GAAGGAG
1 GCAGGAG
545029 CTCAAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.52, T:0.00
Consensus pattern (12 bp):
GCAGGAGAAGGA
Found at i:552943 original size:2 final size:2
Alignment explanation
Indices: 552936--552988 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
552926 TCAATCTACA
*
552936 AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
552978 AT AT AT AT AT A
1 AT AT AT AT AT A
552989 ATTCACGAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:553168 original size:85 final size:84
Alignment explanation
Indices: 553008--553172 Score: 258
Period size: 85 Copynumber: 2.0 Consensus size: 84
552998 ATACAATCAC
* * *
553008 GACACACGAATGTGTGTCATTTTCATTTATGACGGGGCTTCAATGACACGCAATGTAAGTCATAA
1 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGCTTCAATAACACGCAATGTAAGTCATAA
*
553073 ATGCATGTCATAAATTTAT
66 ATGCACGTCATAAATTTAT
* *
553092 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATAACGCGCAATGTAAGTTATA
1 GACACACAAATGTGTGTCATCTTCATTTATGAC-GGGGCTTCAATAACACGCAATGTAAGTCATA
*
553157 AATGCGCGTCATAAAT
65 AATGCACGTCATAAAT
553173 GCATGTCATA
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
84 31 0.42
85 42 0.58
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (84 bp):
GACACACAAATGTGTGTCATCTTCATTTATGACGGGGCTTCAATAACACGCAATGTAAGTCATAA
ATGCACGTCATAAATTTAT
Found at i:553170 original size:13 final size:13
Alignment explanation
Indices: 553154--553198 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
553144 AATGTAAGTT
553154 ATAAATGCGCGTC
1 ATAAATGCGCGTC
**
553167 ATAAATGCATGTC
1 ATAAATGCGCGTC
*
553180 ATAAATGCGCATC
1 ATAAATGCGCGTC
553193 ATAAAT
1 ATAAAT
553199 TTATGACACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (13 bp):
ATAAATGCGCGTC
Found at i:554075 original size:21 final size:21
Alignment explanation
Indices: 554045--554147 Score: 73
Period size: 21 Copynumber: 4.9 Consensus size: 21
554035 TTCTACGTGG
* *
554045 TCCTTCGGAATATATATGTAA
1 TCCTTTGGAATATATATGTGA
** *
554066 TCCTTTGGAACGTATATGTGG
1 TCCTTTGGAATATATATGTGA
* * * * * * *
554087 TTCTTCGGGACACATATTTGG
1 TCCTTTGGAATATATATGTGA
554108 TCCTTTGGAATATATATGTGA
1 TCCTTTGGAATATATATGTGA
*
554129 TCCTTTAGG-ATATCTATGT
1 TCCTTT-GGAATATATATGT
554148 TGTCCTTCAG
Statistics
Matches: 62, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
21 60 0.97
22 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (21 bp):
TCCTTTGGAATATATATGTGA
Found at i:563900 original size:21 final size:21
Alignment explanation
Indices: 563874--563941 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
563864 ATATATATAA
563874 TCCTTTGGAACATATATGTGG
1 TCCTTTGGAACATATATGTGG
* * * *
563895 TTCTTTGGGACACATATTTGG
1 TCCTTTGGAACATATATGTGG
* *
563916 TCCTTTGGAATATATATGTGA
1 TCCTTTGGAACATATATGTGG
563937 TCCTT
1 TCCTT
563942 AAGGAGTGGT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.43
Consensus pattern (21 bp):
TCCTTTGGAACATATATGTGG
Found at i:570752 original size:64 final size:64
Alignment explanation
Indices: 570684--570904 Score: 266
Period size: 64 Copynumber: 3.5 Consensus size: 64
570674 TTGAAGGTGT
** **
570684 ATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAAACATCGAATGCAATTCATG
1 ATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAAT-AAAACATCGAATGCAATTCATG
570747 C
64 C
* * **
570748 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATGAAACATCGAATGGAATTGGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGC
* * * * * *
570812 ATCGATGCATAAGGAGTGCATCGATGTATCCCATCAATAATACAACATCGAATGCATTTTATGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGC
* *
570876 ACCGATGCATCAGTAGTGCATCGATGCAT
1 ATCGATGCATAAGTAGTGCATCGATGCAT
570905 ACCTTCATTA
Statistics
Matches: 134, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
64 130 0.97
65 4 0.03
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAATAAAACATCGAATGCAATTCATGC
Found at i:571400 original size:15 final size:15
Alignment explanation
Indices: 571382--571414 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
571372 GAGGGTATAA
*
571382 TAGTCCTTCGGGATG
1 TAGTCCTTCAGGATG
571397 TAGTCCTTCAGGATG
1 TAGTCCTTCAGGATG
571412 TAG
1 TAG
571415 GGGTCCTACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (15 bp):
TAGTCCTTCAGGATG
Found at i:577671 original size:64 final size:63
Alignment explanation
Indices: 577598--577781 Score: 226
Period size: 64 Copynumber: 2.9 Consensus size: 63
577588 ACTCTTTTAA
* * * **
577598 AATAA-AAACATCGAATGTAATTCATGCATCAATGCATAAGTAGTGCATCGATGCATCCCATT
1 AATAATAAACATCGAATGCAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGC
* * * *
577660 AATAATGAAACATCAAATGCAATTGGTGCATCGATGTATAAGGAGTGCATCGATGCATCCCAGC
1 AATAAT-AAACATCGAATGCAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGC
* * * *
577724 AATAATACAACATCGAATGCATTTTGTGCACCGATGCATCAGTAGTGCATCGATGCAT
1 AATAATA-AACATCGAATGCAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCAT
577782 ACCTTCATTA
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
62 5 0.05
63 1 0.01
64 97 0.94
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (63 bp):
AATAATAAACATCGAATGCAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAGC
Found at i:578067 original size:12 final size:12
Alignment explanation
Indices: 578050--578131 Score: 114
Period size: 12 Copynumber: 6.9 Consensus size: 12
578040 ATATATGGTC
*
578050 ATGTGATATGAT
1 ATGTGATATGAA
578062 ATGTGATATGAA
1 ATGTGATATGAA
578074 ATGTGATATGAA
1 ATGTGATATGAA
578086 ATGTGATATGAA
1 ATGTGATATGAA
578098 ATGTGATATGAGA
1 ATGTGATATGA-A
**
578111 ACATGATATG-A
1 ATGTGATATGAA
578122 A-GTGATATGA
1 ATGTGATATGA
578132 GATACATGAT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
10 7 0.11
11 2 0.03
12 46 0.72
13 9 0.14
ACGTcount: A:0.40, C:0.01, G:0.26, T:0.33
Consensus pattern (12 bp):
ATGTGATATGAA
Found at i:578279 original size:14 final size:15
Alignment explanation
Indices: 578253--578284 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
578243 GAGGGTATAA
578253 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
578268 TAGTCC-TCGGGATG
1 TAGTCCTTCGGGATG
578282 TAG
1 TAG
578285 GGGTCCTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.16, C:0.19, G:0.34, T:0.31
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:586250 original size:187 final size:187
Alignment explanation
Indices: 585935--586308 Score: 716
Period size: 187 Copynumber: 2.0 Consensus size: 187
585925 CTAGATGATC
585935 CTGACTATATCGCCTTATGGAAGCTGCTACTGACTGGACTACTAGAATCTGCCACATCGGACATC
1 CTGACTATATCGCCTTATGGAAGCTGCTACTGACTGGACTACTAGAATCTGCCACATCGGACATC
586000 GCCATGCCCCAAGTCATGCCCATGTGTCTAGGATTGATTCTAGAAAATTAAAAAAAAAGCTACAA
66 GCCATGCCCCAAGTCATGCCCATGTGTCTAGGATTGATTCTAGAAAATTAAAAAAAAAGCTAC-A
586065 AAACTTGCTCTTTAGATGATGTTTTACAAAAATTAAAAG-CCAACAC-AAATCAAATAA
130 AAACTTGCTCTTTAGATGATGTTTTACAAAAATT-AAAGTCCAACACAAAATCAAATAA
586122 CTGACTATATCGCCTTATGGAAGCTGCTACTGACTGGACTACTAGAATCTGCCACATCGGACATC
1 CTGACTATATCGCCTTATGGAAGCTGCTACTGACTGGACTACTAGAATCTGCCACATCGGACATC
586187 GCCATGCCCCAAGTCATGCCCATGTGTCTAGGATTGATTCTAGAAAATTAAAAAAAAAGCTACAA
66 GCCATGCCCCAAGTCATGCCCATGTGTCTAGGATTGATTCTAGAAAATTAAAAAAAAAGCTACAA
586252 AACTTGCTCTTTAGATGATGTTTTACAAAAATTAAAGTCCAACACAAAATCAAATAA
131 AACTTGCTCTTTAGATGATGTTTTACAAAAATTAAAGTCCAACACAAAATCAAATAA
586309 AAAACCTAAA
Statistics
Matches: 185, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
185 4 0.02
186 42 0.23
187 139 0.75
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.26
Consensus pattern (187 bp):
CTGACTATATCGCCTTATGGAAGCTGCTACTGACTGGACTACTAGAATCTGCCACATCGGACATC
GCCATGCCCCAAGTCATGCCCATGTGTCTAGGATTGATTCTAGAAAATTAAAAAAAAAGCTACAA
AACTTGCTCTTTAGATGATGTTTTACAAAAATTAAAGTCCAACACAAAATCAAATAA
Found at i:587090 original size:31 final size:31
Alignment explanation
Indices: 587026--587094 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
587016 TTTTAGTTAT
* * * *
587026 GATACTGTTGTTGTACCAATAATGCAGTGTC
1 GATACTATTGTAGTACCAATAATACAGTATC
* *
587057 GATACTATTGTAGTACCAATACTATAGTATC
1 GATACTATTGTAGTACCAATAATACAGTATC
587088 GATACTA
1 GATACTA
587095 CTATAGTATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (31 bp):
GATACTATTGTAGTACCAATAATACAGTATC
Found at i:588352 original size:13 final size:13
Alignment explanation
Indices: 588327--588372 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
588317 ACAATAAAAT
588327 ATCCAAAAGATAA
1 ATCCAAAAGATAA
588340 ATCCTAAAA-AT-A
1 ATCC-AAAAGATAA
588352 AT-CAAAAGATAA
1 ATCCAAAAGATAA
588364 ATCCCAAAA
1 AT-CCAAAA
588373 TATTTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
10 4 0.14
11 3 0.11
12 6 0.21
13 6 0.21
14 9 0.32
ACGTcount: A:0.61, C:0.17, G:0.04, T:0.17
Consensus pattern (13 bp):
ATCCAAAAGATAA
Found at i:588357 original size:24 final size:24
Alignment explanation
Indices: 588322--588372 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
588312 TATTTACAAT
*
588322 AAAATATCCAAAAGATAAATCCTA
1 AAAATATCCAAAAGATAAATCCCA
588346 AAAATAAT-CAAAAGATAAATCCCA
1 AAAAT-ATCCAAAAGATAAATCCCA
588370 AAA
1 AAA
588373 TATTTTTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.63, C:0.16, G:0.04, T:0.18
Consensus pattern (24 bp):
AAAATATCCAAAAGATAAATCCCA
Found at i:588524 original size:12 final size:12
Alignment explanation
Indices: 588507--588533 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
588497 GATCGCGTCG
588507 TGCCCTAGGTCA
1 TGCCCTAGGTCA
588519 TGCCCTAGGTCA
1 TGCCCTAGGTCA
588531 TGC
1 TGC
588534 TCCTGTCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.33, G:0.26, T:0.26
Consensus pattern (12 bp):
TGCCCTAGGTCA
Found at i:591513 original size:14 final size:14
Alignment explanation
Indices: 591496--591522 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
591486 TTCCTAAAGA
591496 TAAAATAAAATATT
1 TAAAATAAAATATT
591510 TAAAATAAAATAT
1 TAAAATAAAATAT
591523 CCAAAAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAATAAAATATT
Found at i:591551 original size:24 final size:24
Alignment explanation
Indices: 591516--591566 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
591506 TATTTAAAAT
*
591516 AAAATATCCAAAAGATAAATCCTA
1 AAAATATCCAAAAGATAAATCCCA
* *
591540 AAAATAAT-CAAAATATAGATCCCA
1 AAAAT-ATCCAAAAGATAAATCCCA
591564 AAA
1 AAA
591567 TATTTTTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.61, C:0.16, G:0.04, T:0.20
Consensus pattern (24 bp):
AAAATATCCAAAAGATAAATCCCA
Found at i:604406 original size:160 final size:163
Alignment explanation
Indices: 604142--604460 Score: 608
Period size: 160 Copynumber: 2.0 Consensus size: 163
604132 TAACTCTATG
604142 TGAACTAGGACTATATTGTTGAATTCATAGGCTTTGGTTTCAATTCTTCTTTGTGCAGCATAGAT
1 TGAACTAGGACTATATTGTTGAATTCATAGGCTTTGGTTTCAATTCTTCTTTGTGCAGCATAGAT
604207 AGTACATATGATTACAATATTTTTTACAACTTAATGTGAATATATTGTATACAAAT-A-TGCTTA
66 AGTACATATGATTACAATATTTTTTACAACTTAATGTGAATATATTGTATACAAATAATTGCTTA
604270 TATATAATATGATATATAT-TATATATAATATA
131 TATATAATATGATATATATATATATATAATATA
604302 TGAACTAGGACTATATTGTTGAATTCATAGGCTTTGGTTTCAATTCTTCTTTGTGCAGCATAGAT
1 TGAACTAGGACTATATTGTTGAATTCATAGGCTTTGGTTTCAATTCTTCTTTGTGCAGCATAGAT
604367 AGTACATATGATTACAATATTTTTTACAACTTAATGTGAATATATTGTATACAAATAGATTGCTT
66 AGTACATATGATTACAATATTTTTTACAACTTAATGTGAATATATTGTATACAAATA-ATTGCTT
604432 ATATATAATATGATATATATATATATATA
130 ATATATAATATGATATATATATATATATA
604461 TAAAATACAA
Statistics
Matches: 155, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
160 121 0.78
162 1 0.01
163 25 0.16
164 8 0.05
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.42
Consensus pattern (163 bp):
TGAACTAGGACTATATTGTTGAATTCATAGGCTTTGGTTTCAATTCTTCTTTGTGCAGCATAGAT
AGTACATATGATTACAATATTTTTTACAACTTAATGTGAATATATTGTATACAAATAATTGCTTA
TATATAATATGATATATATATATATATAATATA
Found at i:604635 original size:13 final size:13
Alignment explanation
Indices: 604619--604654 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
604609 CTCAATGCGC
604619 GTCATAAATGTGA
1 GTCATAAATGTGA
*
604632 GTCATAAATGTGT
1 GTCATAAATGTGA
*
604645 GTCATCAATG
1 GTCATAAATG
604655 CACGTCATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (13 bp):
GTCATAAATGTGA
Found at i:620098 original size:31 final size:31
Alignment explanation
Indices: 620063--620126 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
620053 TAAAGATGAA
* * * *
620063 GCAGTGCTTTGGAGATAAAGCAGGGGAAGCG
1 GCAGTGCTTTAGAAATAAAGCAAGGGAAACG
620094 GCAGTGCTTTAGAAATAAAGCAAGGGAAACG
1 GCAGTGCTTTAGAAATAAAGCAAGGGAAACG
620125 GC
1 GC
620127 GGAAAAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.36, T:0.16
Consensus pattern (31 bp):
GCAGTGCTTTAGAAATAAAGCAAGGGAAACG
Found at i:620592 original size:184 final size:185
Alignment explanation
Indices: 620283--620652 Score: 733
Period size: 184 Copynumber: 2.0 Consensus size: 185
620273 TTCGTCATCC
620283 AACTTACAACAGTTAACGTTCAAGTGACTCCATCTTAATTAAAATAAAACAAAAGTGACAATATA
1 AACTTACAACAGTTAACGTTCAAGTGACTCCATCTTAATTAAAATAAAACAAAAGTGACAATATA
620348 TTAACTTTTTTTGATCAAGTGACTATACAATAAAAAATGAAACAAAAGTGAATAGTTTAGCCTTG
66 TTAACTTTTTTTGATCAAGTGACTATACAATAAAAAATGAAACAAAAGTGAATAGTTTAGCCTTG
620413 AAACAATCATTGTATGGAAAGGTCCAAAGTCAAGGAAGGCATTACACAAA-ACAA
131 AAACAATCATTGTATGGAAAGGTCCAAAGTCAAGGAAGGCATTACACAAACACAA
620467 AACTTACAACAGTTAACGTTCAAGTGACTCCATCTTAATTAAAATAAAACAAAAGTGACAATATA
1 AACTTACAACAGTTAACGTTCAAGTGACTCCATCTTAATTAAAATAAAACAAAAGTGACAATATA
620532 TTAACTTTTTTTGATCAAGTGACTATACAATAAAAAATGAAACAAAAGTGAATAGTTTAGCCTTG
66 TTAACTTTTTTTGATCAAGTGACTATACAATAAAAAATGAAACAAAAGTGAATAGTTTAGCCTTG
620597 AAACAATCATTGTATGGAAAGGTCCAAAGTCAAGGAAGGCATTACACAAACACAA
131 AAACAATCATTGTATGGAAAGGTCCAAAGTCAAGGAAGGCATTACACAAACACAA
620652 A
1 A
620653 GCAGCTTGAG
Statistics
Matches: 185, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
184 180 0.97
185 5 0.03
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.26
Consensus pattern (185 bp):
AACTTACAACAGTTAACGTTCAAGTGACTCCATCTTAATTAAAATAAAACAAAAGTGACAATATA
TTAACTTTTTTTGATCAAGTGACTATACAATAAAAAATGAAACAAAAGTGAATAGTTTAGCCTTG
AAACAATCATTGTATGGAAAGGTCCAAAGTCAAGGAAGGCATTACACAAACACAA
Done.