genome.fa.s782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000782.1 Hibiscus syriacus cultivar Beakdansim tig00001518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159937

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90--125	17	2.1	17	89	0	54	58	0	2	38	1.13
101--127	14	1.9	14	100	0	54	51	0	3	44	1.19
2572--2604	16	1.9	18	88	11	52	42	6	0	51	1.26
5534--5571	20	1.9	20	94	0	67	5	23	15	55	1.61
5538--5571	10	3.4	10	87	0	50	5	20	11	61	1.50
7683--7742	31	1.9	31	89	0	93	25	13	6	55	1.62
8890--8952	31	2.0	31	100	0	126	26	9	12	50	1.71
9260--9359	48	2.1	48	90	0	155	36	25	8	31	1.85
10667--10695	3	9.7	3	100	0	58	65	0	0	34	0.93
16438--16484	25	1.9	24	82	4	58	51	0	4	44	1.21
16609--16649	22	1.9	21	85	5	55	53	0	2	43	1.13
16694--16797	20	4.9	21	69	19	65	50	1	0	46	1.18
17565--17666	43	2.3	44	81	6	118	31	25	15	27	1.96
19696--19795	30	3.3	30	90	0	146	58	7	32	3	1.40
23685--23715	15	2.1	15	93	0	53	16	35	6	41	1.74
25414--25461	20	2.4	20	89	0	69	27	35	8	29	1.86
25414--25478	20	3.2	20	84	4	60	29	33	7	29	1.85
28763--28795	17	1.9	17	100	0	66	33	6	12	48	1.65
30574--30599	13	2.0	13	100	0	52	15	0	23	61	1.33
30567--30609	20	2.2	20	86	0	59	18	2	20	58	1.50
30621--30746	46	2.8	46	91	1	200	38	7	22	32	1.81
30615--30759	45	3.2	44	88	3	209	38	6	23	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31110--31148	20	2.0	20	94	0	69	17	25	25	30	1.97
31117--31160	20	2.2	20	91	0	70	15	31	22	29	1.95
34253--34292	21	1.9	21	94	0	71	32	10	7	50	1.64
34513--34725	20	10.8	19	71	19	79	20	30	21	28	1.98
34612--34723	40	2.8	40	88	0	170	17	26	23	32	1.97
34611--34723	60	1.9	60	90	0	181	17	26	23	31	1.97
37168--37215	19	2.5	20	82	3	62	52	6	12	29	1.63
39498--39535	7	5.6	7	90	6	60	26	26	2	44	1.67
40532--40592	10	6.1	10	71	5	52	21	39	3	36	1.70
40535--40604	20	3.5	20	86	0	77	21	38	5	34	1.77
40556--40604	20	2.5	20	96	0	89	24	34	8	32	1.85
41993--42194	82	2.5	82	94	0	341	28	22	19	29	1.98
41972--42324	41	8.6	41	73	6	237	28	19	18	33	1.96
45048--45307	43	6.2	42	78	7	219	27	23	16	33	1.96
45164--45332	83	2.0	84	82	7	209	26	24	17	31	1.97
46680--46717	2	19.0	2	100	0	76	50	0	0	50	1.00
47828--47881	20	2.7	20	77	11	65	29	29	12	27	1.94
47905--47988	20	4.2	20	82	8	118	40	23	17	17	1.91
48116--48165	22	2.3	22	89	0	73	24	38	14	24	1.92
48380--48424	13	3.5	13	90	0	72	2	8	13	75	1.13
48374--48424	26	2.0	24	88	7	75	1	9	13	74	1.15
48448--48485	20	2.0	20	89	5	60	55	21	15	7	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50663--50782	42	2.9	42	72	7	109	22	34	16	26	1.95
50730--50781	21	2.5	21	100	0	104	21	30	17	30	1.96
52356--52429	20	3.7	20	85	0	112	39	21	18	20	1.93
52670--52756	39	2.2	39	97	0	165	17	14	20	47	1.83
53133--53182	25	2.0	25	96	0	91	44	22	8	26	1.80
53245--53283	20	2.0	20	100	0	78	41	20	20	17	1.91
53336--53434	34	2.9	34	89	0	144	15	19	23	42	1.88
53371--53434	20	3.5	20	70	24	68	10	17	25	46	1.80
56010--56056	24	2.0	24	91	0	76	36	21	19	23	1.95
56182--56215	12	2.8	12	90	0	50	14	0	29	55	1.40
57039--57103	20	3.3	19	81	10	69	24	13	32	29	1.94
57570--57623	17	2.9	18	76	18	58	51	0	3	44	1.19
63875--63907	17	1.9	17	88	11	50	57	12	6	24	1.57
68166--68205	21	1.9	21	85	10	55	35	10	2	52	1.48
70842--70903	27	2.3	27	100	0	124	29	24	20	25	1.99
74153--74190	20	1.9	20	84	10	51	31	5	7	55	1.51
77159--77221	31	2.0	31	100	0	126	38	15	23	22	1.93
81730--81794	30	2.1	31	83	11	80	40	3	10	46	1.54
81740--81817	32	2.3	36	77	18	87	38	3	12	44	1.61
81924--82005	32	2.6	31	78	1	92	40	3	13	42	1.62
82914--82989	30	2.5	30	89	0	116	34	6	35	23	1.81
88846--88885	18	2.2	18	95	0	71	62	15	2	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92528--92570	21	2.0	21	86	0	59	32	25	23	18	1.97
93117--93437	103	3.1	103	97	0	615	25	13	24	36	1.92
93454--93519	23	2.9	23	84	4	80	25	22	25	25	2.00
99562--99604	21	2.0	21	86	0	59	32	25	23	18	1.97
99632--99669	20	1.9	20	88	0	58	23	34	31	10	1.89
100149--100469	103	3.1	103	94	0	579	26	12	23	37	1.91
100495--100548	23	2.3	23	93	6	92	20	22	25	31	1.98
101790--101842	28	2.0	26	81	7	61	28	5	0	66	1.15
113648--113691	2	23.0	2	90	9	74	50	0	0	50	1.00
114174--114231	28	2.1	27	84	6	73	32	5	3	58	1.37
123678--123754	22	3.5	22	75	16	79	35	11	12	40	1.80
124128--124836	124	5.9	122	85	7	828	38	15	19	25	1.91
124376--124810	113	3.8	111	85	6	541	37	15	19	26	1.92
124618--124880	123	2.2	122	82	5	313	40	14	19	25	1.90
125982--126020	4	9.5	4	94	5	69	23	0	0	76	0.78
126232--126272	15	2.6	16	77	18	50	31	0	0	68	0.90
128057--128646	204	2.9	204	81	7	656	27	26	19	25	1.99
130384--130420	15	2.5	15	95	0	65	5	16	70	8	1.30
131086--131139	22	2.5	22	93	0	90	38	24	7	29	1.82
136314--136353	21	1.9	22	90	10	66	12	10	40	37	1.77
136464--136536	36	2.0	36	86	5	103	30	15	24	30	1.95
136857--136920	21	3.2	20	78	10	78	53	6	15	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136859--136925	18	3.5	19	80	15	75	52	5	13	28	1.64
138989--139072	9	9.6	9	82	12	88	76	1	14	8	1.07
138989--139072	32	2.4	35	80	15	102	76	1	14	8	1.07
138988--139067	41	1.9	42	90	7	128	75	0	16	8	1.04
138989--139076	20	4.4	19	77	17	81	75	1	15	7	1.10
140102--140730	55	11.4	55	88	2	831	31	15	24	29	1.95
140211--140840	55	11.4	56	84	6	263	30	16	23	28	1.96
144442--144511	16	3.7	20	79	16	94	28	17	28	25	1.97
149747--149789	21	2.1	21	91	4	70	41	13	23	20	1.88
150222--150551	83	4.1	80	89	4	491	29	23	10	37	1.87
150222--150551	163	2.0	163	92	1	554	29	23	10	37	1.87
158036--158107	29	2.4	29	83	4	90	29	22	9	38	1.86

Tables:   1

The End!