Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007822.1 Hibiscus syriacus cultivar Beakdansim tig00110159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1828853
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 10
Found at i:2119 original size:20 final size:21
Alignment explanation
Indices: 2073--2133 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
2063 TTCCCCTGTG
2073 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
2096 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
2116 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
2134 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:13336 original size:15 final size:15
Alignment explanation
Indices: 13316--13398 Score: 148
Period size: 15 Copynumber: 5.5 Consensus size: 15
13306 TAATAAGGTT
13316 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
13331 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
13346 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
13361 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
13376 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
13391 ATTTATTT
1 ATTTATTT
13399 ATTACTTTAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 64 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:13410 original size:37 final size:38
Alignment explanation
Indices: 13361--13470 Score: 136
Period size: 37 Copynumber: 3.0 Consensus size: 38
13351 TTATAAAATA
* *
13361 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTT
1 ATTTACTTTAAAATAATTTATTATAAAATAATTTATTG
* **
13399 A-TTACTTTAAAATAAATTATTATAAAAT-ATGGATTG
1 ATTTACTTTAAAATAATTTATTATAAAATAATTTATTG
* *
13435 ATTTATTTTAAAATAATTTATT-TTAAATAATTTATT
1 ATTTACTTTAAAATAATTTATTATAAAATAATTTATT
13471 AGTATAGTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
36 11 0.18
37 48 0.80
38 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.52
Consensus pattern (38 bp):
ATTTACTTTAAAATAATTTATTATAAAATAATTTATTG
Found at i:13464 original size:14 final size:15
Alignment explanation
Indices: 13435--13470 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
13425 ATATGGATTG
13435 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
13450 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
13464 ATTTATT
1 ATTTATT
13471 AGTATAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:13488 original size:32 final size:32
Alignment explanation
Indices: 13450--13813 Score: 380
Period size: 32 Copynumber: 12.4 Consensus size: 32
13440 TTTTAAAATA
* *
13450 ATTTATTTTAAATAATTTATTAGTATAGTTTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
13482 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
13504 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
13536 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
13568 ATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
13600 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
13632 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
13654 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
13686 ATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* * *
13718 ATTGA-TTT--AT--TTTA-AAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* *
13744 ATTTA--TT--AT--TGTAGTT-GTATGTATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTG
*
13770 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
13802 ATTTATTTTAAA
1 ATTTATTTTAAA
13814 ATATGGATTG
Statistics
Matches: 283, Mismatches: 20, Indels: 58
0.78 0.06 0.16
Matches are distributed among these distances:
22 25 0.09
23 8 0.03
25 9 0.03
26 32 0.11
27 4 0.01
28 8 0.03
29 4 0.01
30 2 0.01
31 13 0.05
32 178 0.63
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:13498 original size:69 final size:71
Alignment explanation
Indices: 13361--13588 Score: 223
Period size: 64 Copynumber: 3.3 Consensus size: 71
13351 TTATAAAATA
13361 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTATTACTTTAAAATAAATTATTATAAAA
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTATTACTTT-AAAT--ATTATTATAAAA
13426 TATGGATTG
63 TATGGATTG
* * * *
13435 ATTTATTTTAAAATAATTTATT-TTAAATAATTTA-TTAGTATAGTTT-GAT-TTATTTTAAAAT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTA-T-TACTTTAAATATTATTATAAAAT
13496 ATGGATTG
64 ATGGATTG
* * * *
13504 ATTTATTTT-AAATAATTTATTAGT---ATGAATTGATTTA-T--TTTAAATAAT-TTAT-TAGT
1 ATTTATTTTAAAATAATTTATTA-TAAAAT-AATTTATTTATTACTTTAAATATTATTATAAAAT
13560 ATGGATTG
64 ATGGATTG
13568 ATTTATTTT-AAATAATTTATT
1 ATTTATTTTAAAATAATTTATT
13589 TGTATGGATT
Statistics
Matches: 136, Mismatches: 10, Indels: 26
0.79 0.06 0.15
Matches are distributed among these distances:
64 34 0.25
65 5 0.04
66 2 0.01
67 2 0.01
68 17 0.12
69 31 0.23
70 1 0.01
72 5 0.04
73 12 0.09
74 27 0.20
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (71 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTATTACTTTAAATATTATTATAAAATAT
GGATTG
Found at i:13523 original size:14 final size:14
Alignment explanation
Indices: 13504--13620 Score: 63
Period size: 14 Copynumber: 7.5 Consensus size: 14
13494 ATATGGATTG
13504 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
13518 ATTTATTAGTATGAATTG
1 ATTTATT--T-T-AAATA
13536 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* * *
13550 ATTTATTAGTATGGATTG
1 ATTTATT--T-T-AAATA
13568 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
13582 ATTTATTTGTATGGATTG
1 ATTTATTT-TA---AATA
13600 ATTTATTTTAAATA
1 ATTTATTTTAAATA
13614 ATTTATT
1 ATTTATT
13621 AGTATAGATT
Statistics
Matches: 77, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
14 36 0.47
15 4 0.05
16 4 0.05
17 4 0.05
18 29 0.38
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:13550 original size:86 final size:87
Alignment explanation
Indices: 13450--13813 Score: 318
Period size: 86 Copynumber: 4.1 Consensus size: 87
13440 TTTTAAAATA
*
13450 ATTTATTTTAAATAATTTATTAGTATAGTTTGATTTATTTTA-AAATATGGATTGATTTATTTTA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTATAAATATGGATTGATTTATTTTA
13514 AATAATTTATTAGTATGAATTG
66 AATAATTTATTAGTATGAATTG
*
13536 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTT--ATAA---A----TATGGATTGA
13601 TTTATTTTAAATAATTTATTAGTAT-AGATTG
57 TTTATTTTAAATAATTTATTAGTATGA-ATTG
** * * * ** * * *
13632 ATTTATTTTAAA-ATATGGATT-GATTTA-TTTTAAATAATTTATTAGTATGGATTGATTTATTT
1 ATTTATTTTAAATA-ATTTATTAG-TATAGATTGATTTATTTTATAAATATGGATTGATTTATTT
* *
13694 TAAATAATTTATTTGTATGGATTG
64 TAAATAATTTATTAGTATGAATTG
* * * * * ** *
13718 ATTGA-TTT--AT--TTTA-AAATATGGATTGATTTATTATTGTAGTTGTATGTATTGATTTATT
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATT-TTATA--AATATGGATTGATTTATT
13777 TTAAATAATTTATTAGTATGAATTG
63 TTAAATAATTTATTAGTATGAATTG
13802 ATTTATTTTAAA
1 ATTTATTTTAAA
13814 ATATGGATTG
Statistics
Matches: 221, Mismatches: 34, Indels: 45
0.74 0.11 0.15
Matches are distributed among these distances:
80 2 0.01
81 8 0.04
82 3 0.01
83 1 0.00
84 43 0.19
85 6 0.03
86 81 0.37
87 1 0.00
88 1 0.00
89 2 0.01
92 1 0.00
93 3 0.01
95 11 0.05
96 58 0.26
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (87 bp):
ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTATAAATATGGATTGATTTATTTTA
AATAATTTATTAGTATGAATTG
Found at i:13614 original size:150 final size:150
Alignment explanation
Indices: 13450--13725 Score: 516
Period size: 150 Copynumber: 1.8 Consensus size: 150
13440 TTTTAAAATA
*
13450 ATTTATTTTAAATAATTTATTAGTATAGTTTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
*
13515 ATAATTTATTAGTATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
66 ATAATTTATTAGTATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTGATTTTAAA
13580 TAATTTATTTGTATGGATTG
131 TAATTTATTTGTATGGATTG
13600 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
* *
13665 ATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTGATTT
66 ATAATTTATTAGTATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTGATTT
13726 ATTTTAAAAT
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 122 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (150 bp):
ATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
ATAATTTATTAGTATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTGATTTTAAA
TAATTTATTTGTATGGATTG
Found at i:13809 original size:22 final size:22
Alignment explanation
Indices: 13793--13835 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
13783 AATTTATTAG
13793 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
13815 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
13836 TAATGTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:13917 original size:31 final size:31
Alignment explanation
Indices: 13860--13918 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
13850 AGTTGTATGG
**
13860 ATTATTTAAATTTCAGTACTGTAAAACTAAA
1 ATTATTTAAATTTCAGTACTACAAAACTAAA
*
13891 ATTATTTAAATCTT-AGTATTACAAAACT
1 ATTATTTAAAT-TTCAGTACTACAAAACT
13919 CTTTTAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 22 0.92
32 2 0.08
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTACTACAAAACTAAA
Found at i:16447 original size:30 final size:30
Alignment explanation
Indices: 16425--16484 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
16415 GTGTCAGATC
16425 CACGTAGACTAAATGTTGACGTGGCATGTA
1 CACGTAGACTAAATGTTGACGTGGCATGTA
*
16455 CACGTAGACTAAATGTTGAAGTGGCATGTA
1 CACGTAGACTAAATGTTGACGTGGCATGTA
16485 TATGTGTGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (30 bp):
CACGTAGACTAAATGTTGACGTGGCATGTA
Found at i:16988 original size:17 final size:16
Alignment explanation
Indices: 16967--17093 Score: 61
Period size: 17 Copynumber: 7.9 Consensus size: 16
16957 TTAATAATAC
16967 TAATTAATATTAATTT
1 TAATTAATATTAATTT
* *
16983 TAAATT--TA-TAACTA
1 T-AATTAATATTAATTT
* **
16997 TAATTAATTAATAATAC
1 TAATTAA-TATTAATTT
17014 TAATTAATATTAATTT
1 TAATTAATATTAATTT
*
17030 TAAATTTATAACTATAA--T
1 T-AATTAAT-A-T-TAATTT
* *
17048 TAATTAATAATAA--A
1 TAATTAATATTAATTT
17062 TAATTAATATTAATTT
1 TAATTAATATTAATTT
*
17078 TAAATTTATATTAATT
1 T-AATTAATATTAATT
17094 ATAGTATTAT
Statistics
Matches: 84, Mismatches: 15, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
13 4 0.05
14 20 0.24
15 2 0.02
16 12 0.14
17 39 0.46
18 3 0.04
19 1 0.01
20 3 0.04
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATATTAATTT
Found at i:16988 original size:47 final size:47
Alignment explanation
Indices: 16928--17087 Score: 293
Period size: 47 Copynumber: 3.4 Consensus size: 47
16918 TTTATAACTA
*
16928 ATTAATTTTAAATTTATAACTATAATTCATTAATAATACTAATTAAT
1 ATTAATTTTAAATTTATAACTATAATTAATTAATAATACTAATTAAT
16975 ATTAATTTTAAATTTATAACTATAATTAATTAATAATACTAATTAAT
1 ATTAATTTTAAATTTATAACTATAATTAATTAATAATACTAATTAAT
*
17022 ATTAATTTTAAATTTATAACTATAATTAATTAATAATAAATAATTAAT
1 ATTAATTTTAAATTTATAACTATAATTAATTAATAAT-ACTAATTAAT
17070 ATTAATTTTAAATTTATA
1 ATTAATTTTAAATTTATA
17088 TTAATTATAG
Statistics
Matches: 110, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 83 0.75
48 27 0.25
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (47 bp):
ATTAATTTTAAATTTATAACTATAATTAATTAATAATACTAATTAAT
Found at i:17155 original size:47 final size:46
Alignment explanation
Indices: 16928--17244 Score: 232
Period size: 47 Copynumber: 6.7 Consensus size: 46
16918 TTTATAACTA
* * * * * * *
16928 ATTAATTTTAAATTTATAACTATAATTCATTAATAATACTAATTAAT
1 ATTAATTATAAATTTAAAATTAT-ATTAATTAGTATTATTAATTAAT
* * * * * *
16975 ATTAATTTTAAATTTATAACTATAATTAATTAATAATACTAATTAAT
1 ATTAATTATAAATTTAAAATTAT-ATTAATTAGTATTATTAATTAAT
* * * * * *
17022 ATTAATTTTAAATTTATAACTATAATTAATTAATAATAAATAATTAAT
1 ATTAATTATAAATTTAAAATTAT-ATTAATTAGT-ATTATTAATTAAT
* *
17070 ATTAATTTTAAATTTATATTAATTATAGTATTATTAGTATTATTAATTAAT
1 ATTAATTATAAATTTA-A--AATTATA-T-TAATTAGTATTATTAATTAAT
17121 -TATAATTATAAATTTAAAATTAATATTAATTAGTATTATTAATTAAT
1 AT-TAATTATAAATTTAAAATT-ATATTAATTAGTATTATTAATTAAT
* * *
17168 -TATAGTTATAAATTTTAAATTTATATTAATTAGTATAATTAATT-AT
1 AT-TAATTATAAA-TTTAAAATTATATTAATTAGTATTATTAATTAAT
* *
17214 AGTT-A-TA-AATTTTAAATTTATATTAATTAGT
1 A-TTAATTATAAATTTAAAATTATATTAATTAGT
17245 TATAAATTTT
Statistics
Matches: 242, Mismatches: 17, Indels: 26
0.85 0.06 0.09
Matches are distributed among these distances:
43 21 0.09
44 2 0.01
45 2 0.01
46 2 0.01
47 133 0.55
48 40 0.17
49 3 0.01
50 3 0.01
51 30 0.12
52 6 0.02
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (46 bp):
ATTAATTATAAATTTAAAATTATATTAATTAGTATTATTAATTAAT
Found at i:17170 original size:58 final size:57
Alignment explanation
Indices: 17044--17170 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 57
17034 TTTATAACTA
* * * *
17044 TAATTAATTAATAATAAATAATTAATATTAATTTTAAATTTATATTAATTATAGTAT
1 TAATTAATTATTAATAAATAATTAATATAAATTTAAAATTAATATTAATTATAGTAT
* * *
17101 T-ATTAGTATTATTAATTAATTA-TAATTATAAATTTAAAATTAATATTAATTAGTATTAT
1 TAATTA--ATTATTAATAAATAATTAA-TATAAATTTAAAATTAATATTAATTA-TAGTAT
17160 TAATTAATTAT
1 TAATTAATTAT
17171 AGTTATAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
56 4 0.07
57 4 0.07
58 40 0.69
59 6 0.10
60 4 0.07
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.50
Consensus pattern (57 bp):
TAATTAATTATTAATAAATAATTAATATAAATTTAAAATTAATATTAATTATAGTAT
Found at i:17239 original size:43 final size:44
Alignment explanation
Indices: 17113--17249 Score: 213
Period size: 43 Copynumber: 3.1 Consensus size: 44
17103 TTAGTATTAT
* * *
17113 TAATTAATTATAATTATAAATTTAAAATTAATATTAATTAGTATTA
1 TAATTAATTATAGTTATAAATTTTAAATTTATATTAATTAG--TTA
17159 TTAATTAATTATAGTTATAAATTTTAAATTTATATTAATTAG-TA
1 -TAATTAATTATAGTTATAAATTTTAAATTTATATTAATTAGTTA
17203 TAATTAATTATAGTTATAAATTTTAAATTTATATTAATTAGTTA
1 TAATTAATTATAGTTATAAATTTTAAATTTATATTAATTAGTTA
17247 TAA
1 TAA
17250 ATTTTGAATA
Statistics
Matches: 86, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
43 41 0.48
44 7 0.08
47 38 0.44
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (44 bp):
TAATTAATTATAGTTATAAATTTTAAATTTATATTAATTAGTTA
Found at i:17321 original size:17 final size:17
Alignment explanation
Indices: 17288--17337 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
17278 AATTTATATT
*
17288 AATTAGTTATAAATTTA
1 AATTAATTATAAATTTA
17305 AATTAATTA-AAATTTTA
1 AATTAATTATAAA-TTTA
17322 AATATGAATT-TAAATT
1 AAT-T-AATTATAAATT
17338 GACTCAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 3 0.11
17 15 0.54
18 3 0.11
19 7 0.25
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (17 bp):
AATTAATTATAAATTTA
Found at i:17715 original size:30 final size:30
Alignment explanation
Indices: 17679--17736 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
17669 GCAGTACACA
* *
17679 TGTACATTCCACATCAGCATTTAGTCTACG
1 TGTACATACCACATCAGCATTTAATCTACG
*
17709 TGTACATACCACGTCAGCATTTAATCTA
1 TGTACATACCACATCAGCATTTAATCTA
17737 GGTGGATATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
TGTACATACCACATCAGCATTTAATCTACG
Found at i:17751 original size:30 final size:30
Alignment explanation
Indices: 17682--17754 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
17672 GTACACATGT
* * * *
17682 ACATTCCACATCAGCATTTAGTCTACGTGT
1 ACATACCACGTCAGCATTTAATCTACGTGG
*
17712 ACATACCACGTCAGCATTTAATCTAGGTGG
1 ACATACCACGTCAGCATTTAATCTACGTGG
* *
17742 ATATGCCACGTCA
1 ACATACCACGTCA
17755 TCCTTTACTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (30 bp):
ACATACCACGTCAGCATTTAATCTACGTGG
Found at i:17981 original size:64 final size:64
Alignment explanation
Indices: 17908--18036 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
17898 TCAAATGTTC
17908 CAAAAAAATAATTTGGGCAAAATTGCATATATGGTCAAATGTTA-GGGTATTTGTTTGCATTATG
1 CAAAAAAATAATTTGGGCAAAATTGCATATATGGTC-AATGTTAGGGGTATTTGTTTGCATTATG
* *
17972 CAAAAAAATAATTTGGGTAAAATTGTATATATGGTCAATGTTAGGGGTATTTGTTTGCATTATG
1 CAAAAAAATAATTTGGGCAAAATTGCATATATGGTCAATGTTAGGGGTATTTGTTTGCATTATG
18036 C
1 C
18037 CTTTTGTTTA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
63 7 0.11
64 55 0.89
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (64 bp):
CAAAAAAATAATTTGGGCAAAATTGCATATATGGTCAATGTTAGGGGTATTTGTTTGCATTATG
Found at i:19945 original size:18 final size:18
Alignment explanation
Indices: 19922--19966 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
19912 AAATCCTATA
19922 TTTACATTTTATTTTGCC
1 TTTACATTTTATTTTGCC
*
19940 TTTACATTTTATTTTGCT
1 TTTACATTTTATTTTGCC
*
19958 TTTGCATTT
1 TTTACATTT
19967 CCATTTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.13, G:0.07, T:0.64
Consensus pattern (18 bp):
TTTACATTTTATTTTGCC
Found at i:24505 original size:12 final size:12
Alignment explanation
Indices: 24478--24520 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
24468 ACAATACCGT
24478 ATGAACAGTA--
1 ATGAACAGTACC
24488 ATGAACAGTACC
1 ATGAACAGTACC
*
24500 ATGAACAATACC
1 ATGAACAGTACC
24512 ATGAACAGT
1 ATGAACAGT
24521 GAAAATTACG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 10 0.34
12 19 0.66
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (12 bp):
ATGAACAGTACC
Found at i:25366 original size:63 final size:62
Alignment explanation
Indices: 25251--25471 Score: 268
Period size: 63 Copynumber: 3.5 Consensus size: 62
25241 AACCTCGGCA
* * * *
25251 ACTGTCCATAAGTCCCG-AAGAACCTAGGTAA--ACTGTCCATATGTTCCTTAGAACATATGTAT
1 ACTGTCCATATGT-CCGAAAG-ACATAGGTAATTA-TGTCCATATGTTCCGTAGAACATAGGTAT
* * * * *
25313 ACTGTCCATAAGTCTCAAAAGACATAGCTAATTTTGTCTATATGTTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTC-CGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
*
25376 ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAAAACATAGGTAT
1 ACTGTCCATATGT-CCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
*
25439 ATTGTCCATATGTCCTGAAAGACATAGGTAATT
1 ACTGTCCATATGTCC-GAAAGACATAGGTAATT
25472 CCTTGACTCT
Statistics
Matches: 139, Mismatches: 14, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
61 1 0.01
62 24 0.17
63 113 0.81
64 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (62 bp):
ACTGTCCATATGTCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
Found at i:25419 original size:32 final size:33
Alignment explanation
Indices: 25251--25471 Score: 155
Period size: 31 Copynumber: 7.0 Consensus size: 33
25241 AACCTCGGCA
* *
25251 ACTGTCCATAAGTCCCG-AAGAACCTAGGTAA--
1 ACTGTCCATATGTCCCGAAAG-ACATAGGTAATT
* ** *
25282 ACTGTCCATATGTTCC-TTAGAACATATGT-A-T
1 ACTGTCCATATGTCCCGAAAG-ACATAGGTAATT
* * * *
25313 ACTGTCCATAAGTCTCAAAAGACATAGCTAATT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATT
* * * *
25346 -TTGTCTATATGTTCCG-TAGAACATAGGT-A-T
1 ACTGTCCATATGTCCCGAAAG-ACATAGGTAATT
25376 ACTGTCCATATGTCCCGAAAGACATAGGTAATT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATT
*
25409 A-TGTCCATATGTTCCGTAAA-ACATAGGT-A-T
1 ACTGTCCATATGTCCCG-AAAGACATAGGTAATT
* *
25439 ATTGTCCATATGTCCTGAAAGACATAGGTAATT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATT
25472 CCTTGACTCT
Statistics
Matches: 148, Mismatches: 27, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
30 7 0.05
31 88 0.59
32 46 0.31
33 7 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (33 bp):
ACTGTCCATATGTCCCGAAAGACATAGGTAATT
Found at i:25629 original size:21 final size:22
Alignment explanation
Indices: 25596--25643 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
25586 CTATTCTGTC
25596 ACATA-CAACATGTATGTGTAA
1 ACATATCAACATGTATGTGTAA
25617 ACATATCAA-ATGTATGTGTAA
1 ACATATCAACATGTATGTGTAA
25638 ACATAT
1 ACATAT
25644 ATCTCATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (22 bp):
ACATATCAACATGTATGTGTAA
Found at i:25767 original size:2 final size:2
Alignment explanation
Indices: 25760--25788 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25750 TCTCATATTC
25760 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25789 GTTCACTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50382 original size:61 final size:61
Alignment explanation
Indices: 50287--50409 Score: 185
Period size: 61 Copynumber: 2.0 Consensus size: 61
50277 AATCAGAATA
* *
50287 AATTCATAAACAATAGTAATAGTACATAATAGATACTATAATACAAGTTAAAGTTCAAAGC
1 AATTCATAAACAATAGTAAGAGTACATAATAGATACTATAATACAAGTTAAAGTCCAAAGC
* * *
50348 AATTCATAAACAGA-AGTAAGAGTTCATAATAGATATTATAATACGAGTTAAAGTCCAAAGC
1 AATTCATAAACA-ATAGTAAGAGTACATAATAGATACTATAATACAAGTTAAAGTCCAAAGC
50409 A
1 A
50410 GATAAAATAA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 55 0.98
62 1 0.02
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.27
Consensus pattern (61 bp):
AATTCATAAACAATAGTAAGAGTACATAATAGATACTATAATACAAGTTAAAGTCCAAAGC
Found at i:52290 original size:20 final size:20
Alignment explanation
Indices: 52265--52310 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
52255 AGGAAATGAT
* *
52265 AAAGACCCCAACAGTTCTAA
1 AAAGACCACAACAGTCCTAA
*
52285 AAAGACTACAACAGTCCTAA
1 AAAGACCACAACAGTCCTAA
52305 AAAGAC
1 AAAGAC
52311 TATGATCGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.26, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAGACCACAACAGTCCTAA
Found at i:52311 original size:20 final size:20
Alignment explanation
Indices: 52273--52312 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
52263 ATAAAGACCC
*
52273 CAACAGTTCTAAAAAGACTA
1 CAACAGTCCTAAAAAGACTA
52293 CAACAGTCCTAAAAAGACTA
1 CAACAGTCCTAAAAAGACTA
52313 TGATCGCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.23, G:0.10, T:0.17
Consensus pattern (20 bp):
CAACAGTCCTAAAAAGACTA
Found at i:52331 original size:19 final size:19
Alignment explanation
Indices: 52307--52352 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
52297 AGTCCTAAAA
52307 AGACTATGATCGCCATTAG
1 AGACTATGATCGCCATTAG
52326 AGACTATGATCGCCATTAG
1 AGACTATGATCGCCATTAG
52345 AGACTATG
1 AGACTATG
52353 CTCCCAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (19 bp):
AGACTATGATCGCCATTAG
Found at i:58865 original size:2 final size:2
Alignment explanation
Indices: 58848--58891 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
58838 AAAGCAAGCG
* *
58848 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58890 AT
1 AT
58892 CGAAACTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:62497 original size:17 final size:17
Alignment explanation
Indices: 62475--62517 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
62465 ATTCGAGTTT
*
62475 GAGTTCGAGCTTAAATC
1 GAGTTCAAGCTTAAATC
*
62492 GAGTTCAAGCTTGAATC
1 GAGTTCAAGCTTAAATC
62509 GAGCTTCAA
1 GAG-TTCAA
62518 TCGAGTCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (17 bp):
GAGTTCAAGCTTAAATC
Found at i:63278 original size:2 final size:2
Alignment explanation
Indices: 63271--63330 Score: 60
Period size: 2 Copynumber: 33.0 Consensus size: 2
63261 AAAAATATTT
* *
63271 TA TA TA TA -A T- TA -A TA TA -A AA TA TA TA -A AA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63307 TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
63331 ATCGGGGCGA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
1 6 0.12
2 44 0.88
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:63311 original size:18 final size:17
Alignment explanation
Indices: 63262--63331 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 17
63252 CCCGAACCCA
*
63262 AAAATAT-TTTATATAT
1 AAAATATATATATATAT
*
63278 AATTAATATA-AAATATAT
1 AA--AATATATATATATAT
63296 AAAATAT-TATATATAT
1 AAAATATATATATATAT
*
63312 ATATATATATATATATAT
1 A-AAATATATATATATAT
63330 AA
1 AA
63332 TCGGGGCGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
16 15 0.34
17 6 0.14
18 23 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATATATATATATAT
Found at i:63566 original size:16 final size:16
Alignment explanation
Indices: 63545--63577 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63535 CGTTAATTTT
63545 TTTAAAATAAAAATAA
1 TTTAAAATAAAAATAA
*
63561 TTTAAAATATAAATAA
1 TTTAAAATAAAAATAA
63577 T
1 T
63578 CAAGACATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TTTAAAATAAAAATAA
Found at i:63730 original size:6 final size:6
Alignment explanation
Indices: 63719--63755 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
63709 GCTATATTCT
63719 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC C
63756 ATTTATGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCTCC
Found at i:66685 original size:15 final size:15
Alignment explanation
Indices: 66665--66700 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
66655 CTCTGTTCAC
66665 CATTGATACAT-ATAA
1 CATTGATAC-TCATAA
66680 CATTGATACTCATAA
1 CATTGATACTCATAA
66695 CATTGA
1 CATTGA
66701 ACTGCTACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 1 0.05
15 19 0.95
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (15 bp):
CATTGATACTCATAA
Found at i:66961 original size:27 final size:27
Alignment explanation
Indices: 66908--66961 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
66898 TTATGTTAAC
* *
66908 GAGGACGAAGTTATAAAATTTTAAGAA
1 GAGGACGAACTTATAAAATTCTAAGAA
66935 GAGG-CGAACTTATAAAATTCTAGAGAA
1 GAGGACGAACTTATAAAATTCTA-AGAA
66962 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (27 bp):
GAGGACGAACTTATAAAATTCTAAGAA
Found at i:70251 original size:17 final size:17
Alignment explanation
Indices: 70229--70265 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
70219 TTTTCAGAAT
* *
70229 CGGACCGGTTAGCGAAC
1 CGGACCGATTAACGAAC
70246 CGGACCGATTAACGAAC
1 CGGACCGATTAACGAAC
70263 CGG
1 CGG
70266 TCATGCTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.30, G:0.32, T:0.11
Consensus pattern (17 bp):
CGGACCGATTAACGAAC
Found at i:71562 original size:17 final size:17
Alignment explanation
Indices: 71540--71574 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
71530 TTACTCATTG
* *
71540 ATGACAATGATATGTCA
1 ATGACAACGAGATGTCA
71557 ATGACAACGAGATGTCA
1 ATGACAACGAGATGTCA
71574 A
1 A
71575 AATAGATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (17 bp):
ATGACAACGAGATGTCA
Found at i:88511 original size:12 final size:12
Alignment explanation
Indices: 88490--88531 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
88480 CATAAGATAT
*
88490 ATATGTTATGTG
1 ATATGATATGTG
88502 ATATGATATGTG
1 ATATGATATGTG
**
88514 ATATGACCTGTG
1 ATATGATATGTG
88526 ATATGA
1 ATATGA
88532 GAACATGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.31, C:0.05, G:0.24, T:0.40
Consensus pattern (12 bp):
ATATGATATGTG
Found at i:88694 original size:15 final size:15
Alignment explanation
Indices: 88676--88708 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
88666 GAGGGTATAA
88676 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
*
88691 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGACG
88706 TAG
1 TAG
88709 GAGTCCTACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.30
Consensus pattern (15 bp):
TAGTCCTTCGGGACG
Found at i:94222 original size:39 final size:39
Alignment explanation
Indices: 94163--94239 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
94153 CATGCAATTA
* *
94163 CTATTAATTCTCTAATTGTAATTGATTGTAGTTTGATTG
1 CTATCAATTCTCTAATTGTAATTGATTGTAATTTGATTG
*
94202 CTATCAATTCTCTAATTGTAATTGATTTTAATTTGATT
1 CTATCAATTCTCTAATTGTAATTGATTGTAATTTGATT
94240 ATCATATTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (39 bp):
CTATCAATTCTCTAATTGTAATTGATTGTAATTTGATTG
Found at i:100441 original size:41 final size:41
Alignment explanation
Indices: 100396--100513 Score: 218
Period size: 41 Copynumber: 2.9 Consensus size: 41
100386 AGCCACCGGC
100396 TGCCATCTAGAATGCCATGCAAAATTTCAACAATTGTTGGT
1 TGCCATCTAGAATGCCATGCAAAATTTCAACAATTGTTGGT
100437 TGCCATCTAGAATGCCATGCAAAATTTCAACAATTGTTGGT
1 TGCCATCTAGAATGCCATGCAAAATTTCAACAATTGTTGGT
* *
100478 TGCCATTTAGAATGCCATGCAAAATTTCAATAATTG
1 TGCCATCTAGAATGCCATGCAAAATTTCAACAATTG
100514 CTGCCATGCA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (41 bp):
TGCCATCTAGAATGCCATGCAAAATTTCAACAATTGTTGGT
Found at i:102284 original size:12 final size:12
Alignment explanation
Indices: 102267--102291 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102257 ACAAAGCACC
102267 ATTTGGTGCCTA
1 ATTTGGTGCCTA
102279 ATTTGGTGCCTA
1 ATTTGGTGCCTA
102291 A
1 A
102292 ATTATTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ATTTGGTGCCTA
Found at i:113291 original size:27 final size:28
Alignment explanation
Indices: 113243--113298 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
113233 CTAATTAATT
*
113243 TTATCATTAAATTTTTAAAATTAT-AAA
1 TTATCATTAAATTTATAAAATTATGAAA
* **
113270 TTATTATTAAATTTATCGAATTATGAAA
1 TTATCATTAAATTTATAAAATTATGAAA
113298 T
1 T
113299 AGTTACGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (28 bp):
TTATCATTAAATTTATAAAATTATGAAA
Found at i:113432 original size:23 final size:22
Alignment explanation
Indices: 113406--113461 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
113396 ATAAATTTAA
*
113406 TATTTTAAAAAAATATACATTT
1 TATTTTAAAAAAATATACAATT
* * *
113428 CTATTTTAGAAATATATATAATT
1 -TATTTTAAAAAAATATACAATT
113451 TATTTTAAAAA
1 TATTTTAAAAA
113462 TTATAAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (22 bp):
TATTTTAAAAAAATATACAATT
Found at i:113475 original size:20 final size:22
Alignment explanation
Indices: 113406--113476 Score: 65
Period size: 23 Copynumber: 3.3 Consensus size: 22
113396 ATAAATTTAA
* * **
113406 TATTTTAAAAAAATATACATTT
1 TATTTTAAAAATATATATAAAT
* *
113428 CTATTTTAGAAATATATATAATT
1 -TATTTTAAAAATATATATAAAT
113451 TATTTTAAAAAT-TATA-AAAT
1 TATTTTAAAAATATATATAAAT
113471 TATTTT
1 TATTTT
113477 TTTAAAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
20 9 0.21
21 4 0.10
22 11 0.26
23 18 0.43
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (22 bp):
TATTTTAAAAATATATATAAAT
Found at i:113478 original size:22 final size:22
Alignment explanation
Indices: 113406--113486 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 22
113396 ATAAATTTAA
* * *
113406 TATTTTAAAAAAATATACATTT
1 TATTTTAAAAATATATAAAATT
* *
113428 CTATTTTAGAAATATATATAATT
1 -TATTTTAAAAATATATAAAATT
113451 TATTTTAAAAAT-TATAAAATT
1 TATTTTAAAAATATATAAAATT
* *
113472 ATTTTTTTAAAATAT
1 -TATTTTAAAAATAT
113487 TTGACTCTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 8 0.17
22 21 0.44
23 19 0.40
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (22 bp):
TATTTTAAAAATATATAAAATT
Found at i:114891 original size:13 final size:13
Alignment explanation
Indices: 114873--114901 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
114863 GAACCGGTCC
114873 GACCCGACCCGTT
1 GACCCGACCCGTT
114886 GACCCGACCCGTT
1 GACCCGACCCGTT
114899 GAC
1 GAC
114902 TGTTGATCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.45, G:0.24, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:116959 original size:21 final size:21
Alignment explanation
Indices: 116933--116981 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
116923 CTGAGCAGAA
*
116933 GTTGAAGGGGGCTCTAACTAT
1 GTTGAAGGGGGCCCTAACTAT
116954 GTTGAAGGGGGCCCTAACTAT
1 GTTGAAGGGGGCCCTAACTAT
116975 GTTGAAG
1 GTTGAAG
116982 AAATGGAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (21 bp):
GTTGAAGGGGGCCCTAACTAT
Found at i:122067 original size:13 final size:13
Alignment explanation
Indices: 122044--122083 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
122034 CCGACCCGAG
122044 CCGACCCGTTGAC
1 CCGACCCGTTGAC
* *
122057 CTGACCTGTTGAC
1 CCGACCCGTTGAC
122070 CCGACCCGTTGAC
1 CCGACCCGTTGAC
122083 C
1 C
122084 ATTGACCTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.20
Consensus pattern (13 bp):
CCGACCCGTTGAC
Found at i:124539 original size:3 final size:3
Alignment explanation
Indices: 124533--124565 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
124523 AATTATTATT
124533 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
124566 ATGGGACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:126944 original size:19 final size:20
Alignment explanation
Indices: 126906--126944 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
126896 TAAAAAAATT
126906 AAAAGAAAAAATTATGATTA
1 AAAAGAAAAAATTATGATTA
* *
126926 AAAAGAGAATATTAT-ATTA
1 AAAAGAAAAAATTATGATTA
126945 TAATTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (20 bp):
AAAAGAAAAAATTATGATTA
Found at i:133386 original size:25 final size:25
Alignment explanation
Indices: 133339--133387 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
133329 CAATGTCCTA
*
133339 ATTTATTATTTTAGAAAGTTTAAAG
1 ATTTATTATTTTAGAAAGATTAAAG
*
133364 ATTTAATTTTTTTAGAAA-ATTAAA
1 ATTT-ATTATTTTAGAAAGATTAAA
133388 AAAATATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (25 bp):
ATTTATTATTTTAGAAAGATTAAAG
Found at i:134705 original size:101 final size:100
Alignment explanation
Indices: 134526--134723 Score: 299
Period size: 101 Copynumber: 2.0 Consensus size: 100
134516 GTAGGACTGT
* * *
134526 TTAAAAATATCTCATTAGATTGATTTGGTATGTTGACTCGACGATCCGAATTAAAAAAAATCGGG
1 TTAAAAATATATCATTAGATTGATTTGGTATGTTGACCCGACGATCCGAACTAAAAAAAATCGGG
*
134591 TAATTATATAAAAAAAACCTGACCGGGTCGGGTGTG
66 TAATTATA-AAAAAAAACATGACCGGGTCGGGTGTG
* * *
134627 TTAAAAATATATGATTGGATTGATTTGGTATGTTGACCCGACGATCCGAACTAAAAAAACT-GGG
1 TTAAAAATATATCATTAGATTGATTTGGTATGTTGACCCGACGATCCGAACTAAAAAAAATCGGG
*
134691 TAATTATTAAAAAAATACATGACCGGGTCGGGT
66 TAATTA-TAAAAAAAAACATGACCGGGTCGGGT
134724 ACCCGATCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
100 31 0.35
101 57 0.65
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (100 bp):
TTAAAAATATATCATTAGATTGATTTGGTATGTTGACCCGACGATCCGAACTAAAAAAAATCGGG
TAATTATAAAAAAAAACATGACCGGGTCGGGTGTG
Found at i:134871 original size:14 final size:15
Alignment explanation
Indices: 134846--134886 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
134836 CATATTTAAT
134846 TATTATAATTAAA-TA
1 TATTA-AATTAAACTA
134861 TATTAAATTAAACTA
1 TATTAAATTAAACTA
*
134876 -ATAAAATTAAA
1 TATTAAATTAAA
134887 AAAAATCACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (15 bp):
TATTAAATTAAACTA
Found at i:147654 original size:20 final size:20
Alignment explanation
Indices: 147629--147700 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
147619 TGAAGTTATG
147629 GTTTTATAATAATTTATTAA
1 GTTTTATAATAATTTATTAA
147649 GTTTTATAATAATTTATTAA
1 GTTTTATAATAATTTATTAA
* * *
147669 ATTTAATAATTATTT-TATAA
1 GTTTTATAATAATTTAT-TAA
*
147689 CTTTTATAATAA
1 GTTTTATAATAA
147701 AAAATCTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 1 0.02
20 44 0.98
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (20 bp):
GTTTTATAATAATTTATTAA
Found at i:148315 original size:24 final size:24
Alignment explanation
Indices: 148265--148322 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
148255 ACAATAAATT
* **
148265 ATATTATTTATTAAAAAAATATTA
1 ATATTATTTTTTAAAAAAATAGAA
* *
148289 ATATTATTTTTTAAAATATTAGAA
1 ATATTATTTTTTAAAAAAATAGAA
148313 ATATT-TTTTT
1 ATATTATTTTT
148323 CATATTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
ATATTATTTTTTAAAAAAATAGAA
Found at i:148317 original size:21 final size:21
Alignment explanation
Indices: 148280--148321 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
148270 ATTTATTAAA
*
148280 AAAATATTAATATTATTTTTT
1 AAAATATTAATAATATTTTTT
148301 AAAATATTAGA-AATATTTTTT
1 AAAATATTA-ATAATATTTTTT
148322 TCATATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
AAAATATTAATAATATTTTTT
Found at i:148496 original size:17 final size:17
Alignment explanation
Indices: 148442--148501 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 17
148432 TTATGAAAAT
148442 AATAATAATATGCTATTAA
1 AATAATAATAT--TATTAA
* *
148461 TTATACTAATTACTTATTAA
1 -AATAATAA-TA-TTATTAA
148481 AATAATAATATTATTAA
1 AATAATAATATTATTAA
148498 AATA
1 AATA
148502 TTAAAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
17 11 0.32
18 2 0.06
19 6 0.18
20 12 0.35
21 2 0.06
22 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (17 bp):
AATAATAATATTATTAA
Found at i:148501 original size:14 final size:14
Alignment explanation
Indices: 148475--148524 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
148465 ACTAATTACT
148475 TATTAAAATAATAA
1 TATTAAAATAATAA
*
148489 TATT--ATTAA-AA
1 TATTAAAATAATAA
148500 TATTAAAA-ATATAA
1 TATTAAAATA-ATAA
148514 TATTAAAATAA
1 TATTAAAATAA
148525 AAAATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
11 6 0.21
12 5 0.17
13 2 0.07
14 15 0.52
15 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TATTAAAATAATAA
Found at i:148510 original size:9 final size:8
Alignment explanation
Indices: 148475--148532 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
148465 ACTAATTACT
148475 TATTAAAA
1 TATTAAAA
* *
148483 TAATAATAT
1 TATTAA-AA
148492 TATTAAAA
1 TATTAAAA
148500 TATTAAAA
1 TATTAAAA
*
148508 -A-TATAA
1 TATTAAAA
148514 TATTAAAA
1 TATTAAAA
*
148522 TA-AAAAA
1 TATTAAAA
148529 TATT
1 TATT
148533 TTATTATATT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
6 4 0.11
7 8 0.21
8 20 0.53
9 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TATTAAAA
Found at i:148520 original size:22 final size:20
Alignment explanation
Indices: 148475--148531 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
148465 ACTAATTACT
*
148475 TATTAAAAT-AATAATAT--
1 TATTAAAATAAAAAATATAA
148492 TATTAAAATATTAAAAATATAA
1 TATTAAAATA--AAAAATATAA
148514 TATTAAAATAAAAAATAT
1 TATTAAAATAAAAAATAT
148532 TTTATTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
17 9 0.26
20 15 0.44
22 10 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATTAAAATAAAAAATATAA
Found at i:149294 original size:70 final size:71
Alignment explanation
Indices: 149088--149889 Score: 889
Period size: 71 Copynumber: 11.6 Consensus size: 71
149078 AGTACCAAGG
* * * * *
149088 ATACACACTAAACGTGCACCTTAGCTAGTCCTACGTATTATACACATTATAAATACGGATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
*
149153 CCATAG
66 CCATAA
* * * * *
149159 ATACACTCTAAACGTGCACCTTAACTACTCCTACATATTATACTCATTATAATTA-ACATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
149223 CCATAA
66 CCATAA
* * * * *
149229 ATACACACT-AATGCGCACCTTAACTACTCCTAAATATTATACTCATTATAAATACACATATCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
149293 CCA-AA
66 CCATAA
* * * * * * *
149298 ATACAC-CT-TA-GC-TACTCCTA-CATA-T--TATA-ATCAT--T-A-T--AAATATGCATATC
1 ATACACACTAAACGCGCAC-CTTAGC-TACTCCTACATATTATACTCATTATAAATACGCATACC
149348 TACCATAA
64 TACCATAA
* *** * *
149356 ATACACACTAAATGTATACCTTAGCTACTCCTACATATTATACACATTATAAATATGCATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
*
149421 TCATAA
66 CCATAA
* * * * *
149427 AAACACTCTAAACGCGCA-CTGTAACTACTCCTACATATTATACACATTATAAATATGCATACCT
1 ATACACACTAAACGCGCACCT-TAGCTACTCCTACATATTATACTCATTATAAATACGCATACCT
149491 ACCATAA
65 ACCATAA
* * * *
149498 ATACACACTAAACACGCACCTTAACTACTTCTACATATTATACTCATTATAAATATGCATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
149563 CCATAA
66 CCATAA
* * * *
149569 ATACACACTAAACGTGCACTTTAACTACTCCTACATA-TATACTCATTATAAATATGCATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
149633 CCATAA
66 CCATAA
* ** *
149639 ATACACACTAAACG-GCACCTTAGCTAGTCCTATGTATTATACACATTATAAATACG-ATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
*
149702 CCATAG
66 CCATAA
* *
149708 ATACACTCTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTAT-AAT-TGACATACCT
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACG-CATACCT
149771 ACCATAA
65 ACCATAA
* *
149778 ATACACACT-AATGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACACATACCTA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
*
149842 TCATAA
66 CCATAA
* * *
149848 GTACACACTAAACGTGCACCTTAGCTCCTCCTACATATTATA
1 ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATA
149890 TATATATATA
Statistics
Matches: 632, Mismatches: 71, Indels: 56
0.83 0.09 0.07
Matches are distributed among these distances:
57 16 0.03
58 8 0.01
59 3 0.00
60 2 0.00
61 7 0.01
62 5 0.01
63 4 0.01
64 6 0.01
65 4 0.01
66 4 0.01
67 7 0.01
68 5 0.01
69 134 0.21
70 172 0.27
71 253 0.40
72 2 0.00
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.30
Consensus pattern (71 bp):
ATACACACTAAACGCGCACCTTAGCTACTCCTACATATTATACTCATTATAAATACGCATACCTA
CCATAA
Found at i:149313 original size:57 final size:58
Alignment explanation
Indices: 149244--149361 Score: 184
Period size: 57 Copynumber: 2.1 Consensus size: 58
149234 CACTAATGCG
*
149244 CACCTTAACTACTCCTAAATATTATACTCATTATAAATACACATATCTACCA-AAATA
1 CACCTTAACTACTCCTAAATATTATAATCATTATAAATACACATATCTACCATAAATA
* * **
149301 CACCTTAGCTACTCCTACATATTATAATCATTATAAATATGCATATCTACCATAAATA
1 CACCTTAACTACTCCTAAATATTATAATCATTATAAATACACATATCTACCATAAATA
149359 CAC
1 CAC
149362 ACTAAATGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 47 0.85
58 8 0.15
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.32
Consensus pattern (58 bp):
CACCTTAACTACTCCTAAATATTATAATCATTATAAATACACATATCTACCATAAATA
Found at i:150151 original size:43 final size:43
Alignment explanation
Indices: 150096--150519 Score: 269
Period size: 43 Copynumber: 10.1 Consensus size: 43
150086 AACAAAAAAT
* * *
150096 GCCGCAATAGGTCAATATCTATTA-CGACGTTTTTTGAACAAAC
1 GCCGCAAAAGGTCAATATCTA-TAGCGGCGTTTTTGGAACAAAC
* * * *
150139 ACCGCAAAAGGTCGATATCTATAGCGGCATTTTTGGAATAAAC
1 GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGAACAAAC
* * * * * *
150182 GCCGCAAAAAGT-TATGATATATAGCGGCGTTTCTAGAAAAAAC
1 GCCGCAAAAGGTCAAT-ATCTATAGCGGCGTTTTTGGAACAAAC
* * * *
150225 ACCGCAAAAGGTC-AGATCTATAGCGGCATTTTTGGATACAAAT
1 GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGA-ACAAAC
* * * *
150268 GCCGCAAAAGAG--AAGACCTATA-CTGTCGTTTTTAGAACAAAC
1 GCCGCAAAAG-GTCAATATCTATAGC-GGCGTTTTTGGAACAAAC
*
150310 GCCGCAAAAGGTCAA-ACCTATAGCGGCGTTTTTGGACACAAAC
1 GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGA-ACAAAC
* * * ** *
150353 GCTGCAAAAGGTC-AGACCTATAAAGGCGTTTTTGAACACAAAC
1 GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGA-ACAAAC
* * * *
150396 GCCGCAAAAGAG--AAGACCTATA--------ATTAGAACAAAC
1 GCCGCAAAAG-GTCAATATCTATAGCGGCGTTTTTGGAACAAAC
* * *
150430 GCCGTAAAAGGTC-AGACCTATAGCGGCGTTTTTGGACACAAAC
1 GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGA-ACAAAC
* * *
150473 GCCGCAAAAAGTC-AGACCTATAGCGGCGTTTTT-GATACAAAC
1 GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGA-ACAAAC
150515 GCCGC
1 GCCGC
150520 TAATTACCTT
Statistics
Matches: 310, Mismatches: 46, Indels: 51
0.76 0.11 0.13
Matches are distributed among these distances:
33 1 0.00
34 24 0.08
35 3 0.01
41 1 0.00
42 72 0.23
43 207 0.67
44 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (43 bp):
GCCGCAAAAGGTCAATATCTATAGCGGCGTTTTTGGAACAAAC
Found at i:150298 original size:85 final size:85
Alignment explanation
Indices: 150135--150405 Score: 264
Period size: 85 Copynumber: 3.2 Consensus size: 85
150125 TTTTTTGAAC
* * *
150135 AAACACCGCAAAAGGTCGATATCTATAGCGGCATTTTTGGAATAAACGCCGCAAAA-AGTTATGA
1 AAACACCGCAAAAGGTC-AAATCTATAGCGGCATTTTTGGAACAAACGCCGCAAAAGAG-TAAGA
*
150199 TATATAGCGGCGTTTCTAGAAA
64 CATATAGCGGCGTTTCTAGAAA
* *
150221 AAACACCGCAAAAGGTCAGATCTATAGCGGCATTTTTGGATACAAATGCCGCAAAAGAG-AAGAC
1 AAACACCGCAAAAGGTCAAATCTATAGCGGCATTTTTGGA-ACAAACGCCGCAAAAGAGTAAGAC
* * * *
150285 CTATA-CTGTCGTTTTTAGAAC
65 ATATAGC-GGCGTTTCTAGAAA
* * * * *
150306 AAACGCCGCAAAAGGTCAAACCTATAGCGGCGTTTTTGGACACAAACGCTGCAAAAG-GTCAGAC
1 AAACACCGCAAAAGGTCAAATCTATAGCGGCATTTTTGGA-ACAAACGCCGCAAAAGAGTAAGAC
* ** *
150370 CTATAAAGGCGTTT-TTGAACA
65 ATATAGCGGCGTTTCTAGAA-A
*
150391 CAAACGCCGCAAAAG
1 -AAACACCGCAAAAG
150406 AGAAGACCTA
Statistics
Matches: 157, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
84 6 0.04
85 105 0.67
86 44 0.28
87 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (85 bp):
AAACACCGCAAAAGGTCAAATCTATAGCGGCATTTTTGGAACAAACGCCGCAAAAGAGTAAGACA
TATAGCGGCGTTTCTAGAAA
Found at i:150311 original size:128 final size:128
Alignment explanation
Indices: 150168--150519 Score: 328
Period size: 128 Copynumber: 2.8 Consensus size: 128
150158 TATAGCGGCA
* * * * *
150168 TTTTTGGAATAAACGCCGCAAAAAGTTATGATATATAGCGGCGTTTCTAGA-AAAAACACCGCAA
1 TTTTTAGAACAAACGCCGCAAAAAGTCA-AACATATAGCGGCGTTTCTAGACAAAAACACCGCAA
* ** * * *
150232 AAGGTCAGATCTATAGCGGCATTTTTGGATACAAATGCCGCAAAAGAGAAGACCTATACTGTCG
65 AAGGTCAGACCTATAAAGGCATTTTTGAACACAAACGCCGCAAAAGAGAAGACCTATACTGTCG
* * * * * * *
150296 TTTTTAGAACAAACGCCGCAAAAGGTCAAACCTATAGCGGCGTTTTTGGACACAAACGCTGCAAA
1 TTTTTAGAACAAACGCCGCAAAAAGTCAAACATATAGCGGCGTTTCTAGACAAAAACACCGCAAA
*
150361 AGGTCAGACCTATAAAGGCGTTTTTGAACACAAACGCCGCAAAAGAGAAGACCTATA------
66 AGGTCAGACCTATAAAGGCATTTTTGAACACAAACGCCGCAAAAGAGAAGACCTATACTGTCG
* * * * * * * * *
150418 --ATTAGAACAAACGCCGTAAAAGGTCAGACCTATAGCGGCGTTTTTGGACACAAACGCCGCAAA
1 TTTTTAGAACAAACGCCGCAAAAAGTCAAACATATAGCGGCGTTTCTAGACAAAAACACCGCAAA
* ** * *
150481 AAGTCAGACCTATAGCGGCGTTTTTG-ATACAAACGCCGC
66 AGGTCAGACCTATAAAGGCATTTTTGAACACAAACGCCGC
150520 TAATTACCTT
Statistics
Matches: 196, Mismatches: 27, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
119 12 0.06
120 82 0.42
127 17 0.09
128 85 0.43
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (128 bp):
TTTTTAGAACAAACGCCGCAAAAAGTCAAACATATAGCGGCGTTTCTAGACAAAAACACCGCAAA
AGGTCAGACCTATAAAGGCATTTTTGAACACAAACGCCGCAAAAGAGAAGACCTATACTGTCG
Found at i:150456 original size:120 final size:119
Alignment explanation
Indices: 150299--150519 Score: 370
Period size: 120 Copynumber: 1.8 Consensus size: 119
150289 ACTGTCGTTT
* *
150299 TTAGAACAAACGCCGCAAAAGGTCAAACCTATAGCGGCGTTTTTGGACACAAACGCTGCAAAAGG
1 TTAGAACAAACGCCGCAAAAGGTCAAACCTATAGCGGCGTTTTTGGACACAAACGCCGCAAAAAG
150364 TCAGACCTATAAAGGCGTTTTTGAACACAAACGCCGCAAAAGAGAAGACCTATAA
66 TCAGACCTATAAAGGCGTTTTTG-ACACAAACGCCGCAAAAGAGAAGACCTATAA
* *
150419 TTAGAACAAACGCCGTAAAAGGTCAGACCTATAGCGGCGTTTTTGGACACAAACGCCGCAAAAAG
1 TTAGAACAAACGCCGCAAAAGGTCAAACCTATAGCGGCGTTTTTGGACACAAACGCCGCAAAAAG
** *
150484 TCAGACCTATAGCGGCGTTTTTGATACAAACGCCGC
66 TCAGACCTATAAAGGCGTTTTTGACACAAACGCCGC
150520 TAATTACCTT
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
119 12 0.13
120 82 0.87
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.19
Consensus pattern (119 bp):
TTAGAACAAACGCCGCAAAAGGTCAAACCTATAGCGGCGTTTTTGGACACAAACGCCGCAAAAAG
TCAGACCTATAAAGGCGTTTTTGACACAAACGCCGCAAAAGAGAAGACCTATAA
Found at i:150474 original size:77 final size:77
Alignment explanation
Indices: 150347--150494 Score: 226
Period size: 77 Copynumber: 1.9 Consensus size: 77
150337 GTTTTTGGAC
*
150347 ACAAACGCTGCAAAAGGTCAGACCTATAAAGGCGTTTTTGAACACAAACGCCGCAAAAGAG-AAG
1 ACAAACGCCGCAAAAGGTCAGACCTATAAAGGCGTTTTTGAACACAAACGCCGCAAAA-AGTAAG
150411 ACCTATAATTAGA
65 ACCTATAATTAGA
* ** * *
150424 ACAAACGCCGTAAAAGGTCAGACCTATAGCGGCGTTTTTGGACACAAACGCCGCAAAAAGTCAGA
1 ACAAACGCCGCAAAAGGTCAGACCTATAAAGGCGTTTTTGAACACAAACGCCGCAAAAAGTAAGA
150489 CCTATA
66 CCTATA
150495 GCGGCGTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 2 0.03
77 62 0.97
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (77 bp):
ACAAACGCCGCAAAAGGTCAGACCTATAAAGGCGTTTTTGAACACAAACGCCGCAAAAAGTAAGA
CCTATAATTAGA
Found at i:154592 original size:162 final size:166
Alignment explanation
Indices: 154300--154638 Score: 483
Period size: 162 Copynumber: 2.1 Consensus size: 166
154290 TTGTAAACTT
* * *
154300 GCGGCGTTTGTAAACACAAACGCCACTGTAGTACAAGCGTATAGCGGCATTTGAATAAAAATGCC
1 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGCGTATAACGGCATTTGAATAAAAACGCC
* *
154365 ACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGTCAATAAAGTACGAGTCTTTAGCGGC
66 ACTAAAGTACGAATCTCTAGCGGCGTTTGTATAAAAATGTCAATAAAGTACGAGTCTTTAGCGGC
*
154430 GTTTGTATAAAAACGCCACTAAACTA-TGAGTCTTTA
131 GTTTGTATAAAAACGCCACTAAACTACT-ACTCTTTA
* * * *
154466 GCGGCGTTTGTAAACACAAACGCCACTATAGTACATGTGTATAACGG-GTTTGTATAAAAACGCC
1 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGCGTATAACGGCATTTGAATAAAAACGCC
* * *
154530 ACT-AAGTAC-AAT-TCTAGCGGCGTTTGTATAAAAATG-CGACTAAATTACGATTCTTTAGCGG
66 ACTAAAGTACGAATCTCTAGCGGCGTTTGTATAAAAATGTC-AATAAAGTACGAGTCTTTAGCGG
* *
154591 CGTTTGTATAAAAACGCCACTAAAGTACTACTCTTTT
130 CGTTTGTATAAAAACGCCACTAAACTACTACTCTTTA
154628 GCGGCGTTTGT
1 GCGGCGTTTGT
154639 TGAAAAAATG
Statistics
Matches: 156, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
161 1 0.01
162 86 0.55
163 3 0.02
164 6 0.04
165 17 0.11
166 43 0.28
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (166 bp):
GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGCGTATAACGGCATTTGAATAAAAACGCC
ACTAAAGTACGAATCTCTAGCGGCGTTTGTATAAAAATGTCAATAAAGTACGAGTCTTTAGCGGC
GTTTGTATAAAAACGCCACTAAACTACTACTCTTTA
Found at i:154626 original size:41 final size:41
Alignment explanation
Indices: 154300--154698 Score: 339
Period size: 41 Copynumber: 9.7 Consensus size: 41
154290 TTGTAAACTT
* ** * *
154300 GCGGCGTTTGTAAACACAAACGCCACTGTAGTACAAG-CGTATA
1 GCGGCGTTTGTATA-A-AAACGCCACTAAAGTACGAGTC-TTTA
* * *
154343 GCGGCATTTGAATAAAAATGCCACTAAAGTACGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * *
154384 GCGGCGTTTGTATAAAAATGTCAATAAAGTACGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* *
154425 GCGGCGTTTGTATAAAAACGCCACTAAACTATGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * * *
154466 GCGGCGTTTGTAAACACAAACGCCACTATAGTAC-ATGTGTATA
1 GCGGCGTTTGTATA-A-AAACGCCACTAAAGTACGA-GTCTTTA
* * *
154509 ACGG-GTTTGTATAAAAACGCCACT-AAGTAC-AAT-TCTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * * *
154546 GCGGCGTTTGTATAAAAATGCGACTAAATTACGATTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * *
154587 GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTTTT
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * * **
154628 GCGGCGTTTGT-TGAAAAAATGCCACTATAG-ATGAACCTATT-
1 GCGGCGTTTGTAT--AAAAACGCCACTAAAGTACGAGTCT-TTA
* **
154669 GCGGCGTTTTTATAAAAACGCTGCTAAAGT
1 GCGGCGTTTGTATAAAAACGCCACTAAAGT
154699 TACCATTTGT
Statistics
Matches: 292, Mismatches: 51, Indels: 28
0.79 0.14 0.08
Matches are distributed among these distances:
37 6 0.02
38 19 0.07
39 11 0.04
40 25 0.09
41 169 0.58
42 29 0.10
43 33 0.11
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (41 bp):
GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
Found at i:159192 original size:21 final size:21
Alignment explanation
Indices: 159167--159216 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
159157 ATTTAATAAT
159167 ATAATATAAT-AA-TATTATTA
1 ATAATATAATCAATTATTA-TA
*
159187 CATAATATACTCAATTATTATA
1 -ATAATATAATCAATTATTATA
159209 ATAATATA
1 ATAATATA
159217 TGATACTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 17 0.65
22 4 0.15
23 5 0.19
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (21 bp):
ATAATATAATCAATTATTATA
Found at i:159374 original size:22 final size:20
Alignment explanation
Indices: 159349--159401 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
159339 TAGTCTAATA
159349 ATATTATAAAAATCCTTAAAAT
1 ATATTATAAAAAT--TTAAAAT
*
159371 ATATTTATTAATAATTTAAAAT
1 ATA-TTA-TAAAAATTTAAAAT
*
159393 ATAATATAA
1 ATATTATAA
159402 TATTTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 3 0.11
21 2 0.07
22 13 0.48
23 3 0.11
24 6 0.22
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATTATAAAAATTTAAAAT
Found at i:159568 original size:22 final size:23
Alignment explanation
Indices: 159536--159578 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
159526 ATTCTAATAT
159536 TTTTTAAAAT-AACAATATTAAG
1 TTTTTAAAATAAACAATATTAAG
* *
159558 TTTTTATAATAAATAATATTA
1 TTTTTAAAATAAACAATATTA
159579 TTTATTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTTTAAAATAAACAATATTAAG
Found at i:162479 original size:2 final size:2
Alignment explanation
Indices: 162472--162510 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
162462 AAATGAAAGC
* *
162472 AT AT AT AT AT AT AT AT AT AT AG GT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
162511 GGTATTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:162500 original size:18 final size:18
Alignment explanation
Indices: 162477--162515 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
162467 AAAGCATATA
162477 TATATATATATATATAGG
1 TATATATATATATATAGG
162495 TATATATATATATATAGG
1 TATATATATATATATAGG
162513 TAT
1 TAT
162516 TGTATTTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (18 bp):
TATATATATATATATAGG
Found at i:167598 original size:36 final size:36
Alignment explanation
Indices: 167551--167643 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
167541 ACTTTGTATC
*
167551 ACGAGTAAGACAGAGTTGTATTTTTATTTATAACCA
1 ACGAGTGAGACAGAGTTGTATTTTTATTTATAACCA
167587 ACGAGTGAGACAGAGTTGTATTTTTATTTATAACCA
1 ACGAGTGAGACAGAGTTGTATTTTTATTTATAACCA
167623 ACGAGTGAGACAGAGTTGTAT
1 ACGAGTGAGACAGAGTTGTAT
167644 ATATATAAGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (36 bp):
ACGAGTGAGACAGAGTTGTATTTTTATTTATAACCA
Found at i:171287 original size:21 final size:21
Alignment explanation
Indices: 171258--171304 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
171248 TTTATAAATT
* *
171258 TATATATTTTCATGATCAATC
1 TATACATTTGCATGATCAATC
171279 TATACATTTGCATGATCAATC
1 TATACATTTGCATGATCAATC
171300 TATAC
1 TATAC
171305 GTAAATTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (21 bp):
TATACATTTGCATGATCAATC
Found at i:173231 original size:20 final size:20
Alignment explanation
Indices: 173206--173243 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
173196 CACATGTTAA
*
173206 AGAATGCATCGATACACTGT
1 AGAATGCACCGATACACTGT
*
173226 AGAATGTACCGATACACT
1 AGAATGCACCGATACACT
173244 TCAAGGGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (20 bp):
AGAATGCACCGATACACTGT
Found at i:184854 original size:668 final size:673
Alignment explanation
Indices: 176336--205724 Score: 52785
Period size: 668 Copynumber: 44.0 Consensus size: 673
176326 AGAATGAAAT
* * *
176336 GTTAAGTAAAGAAGGCAACATAAGAACATTAGAAGGTATGTTCTTATTGGTATGTACAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
176401 TTCGAGGATGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAATTGGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
176465 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
176530 GAAAAGTGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
176595 AAAGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAAT--AGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
176658 AAA-TTGGAGATTGTTTTATCTTCTT-CTCTTCTCTTCTCGTAAGCTCCAT-GAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
*
176720 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAGAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
176785 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
* * * *
176850 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTAGAGGTTAAAGTTGATTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
*
176915 A-GGTT-ATTAAGAAGTTAGATGTGATAGAATTGAATTAAG-ACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
176977 TCTTTGATTCAAGAATTATAGAAG
651 T-TTTGATTCAAGAATTATAGAAG
*
177001 GTTAATTAAAGGAGGC-ACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
177065 TTCGAGGACG-ATTTTCTTTAAAGGAGGGGAGATTTGCAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
177129 AAATTGAAAGATTCT-AAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
177193 G-AAAATGTTGATGTTGGA-TTAATAACAAAGTTTGAAAGTAATAAGGGT-AAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
177255 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
* ** *
177320 GAAAATTTGGAGTTTTGTTTTATCTTCATCCTC-TCTCTTCTCGTAAGCTCCATGGCAAAGGTAA
325 -AAAATTTGGAG-ATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAA
177384 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
388 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
* * *
177449 GA-TAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATGAAGTTATGAGAGATTGAAAATAA
453 TATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
*
177513 GAGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTGGAGGTTAAATTTGACTTGT
518 GAGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
* *
177578 CAAATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGA
583 CAAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGA
177643 AATTCTTTGATTCAAGAATTATAGAAG
648 AATT-TTTGATTCAAGAATTATAGAAG
* *
177670 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
177735 TTCGAGGACGAATTTT-TTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTGGGGGTTAGTGAC
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATT-AGGGTTAGTGAC
177799 TAAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAA
130 TAAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAA
* *
177864 TGAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTC
195 TGAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTC
177929 TAAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA
260 TAAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAA
*
177994 AAAAATTCTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAA
324 AAAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAA
178059 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
388 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
* *
178124 GATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
453 TATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
*
178189 GAGGTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
518 GAGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
178254 CAAAGGGTTAATTAAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG
583 CAAAGGGTTAATT-AAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG
*
178319 AAATTTATTGATTCAAGAATTATAGAAT
647 AAATTT-TTGATTCAAGAATTATAGAAG
178347 GTTAAGTAAAGGAGGC-A-ATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
** *
178410 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATCGGGGATAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
178475 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
178540 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
178604 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
*
178669 AAAATTCTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
178734 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
178797 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
*
178862 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTGGAGGTTAAATTTGAC-T-TC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
* *
178925 AAATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
178990 ATTCTTTGATTCAAGAATTATAGAAG
649 ATT-TTTGATTCAAGAATTATAGAAG
*
179016 GTTAAGTAAAGGAGG---CATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATG-AAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
179077 TTCGAGGATG-ATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAA-T-GGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
179139 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
179204 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGT-AAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
179268 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
*
179333 AAAATTTTGGAGATTGTTTTATCTTCTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
*
179398 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
179463 ATTAAGGAAAGCTTAAGATGTATTAAAACTC-AAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
179527 AGGTTTCAAATTGAAATCTTGG-AAA-AGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
179590 AAAGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
179654 ATTTATTGATTCAAGAATTATAGAAT
649 ATTT-TTGATTCAAGAATTATAGAAG
*
179680 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
179745 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCT-AAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
179809 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
179874 G-AAAATGTTGATGTT-GATTTAATAACAAAGTTTGAAAGTAATAAGGGT-AAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
179936 AAGGAAGGATTTTATTTCT-CCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
180000 AAATTCTGGAGATTGTTTTATC---TTCATCTTCTCTTCTCGTAAGCTCCATGG-AAAGGTAAGT
326 AAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
180061 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
180126 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
*
180191 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTT-GAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
*
180255 AATGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
180319 TTTTTGATTCAAGAATTATAGAAG
650 TTTTTGATTCAAGAATTATAGAAG
* *
180343 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
180408 TTCGAGGACG-ATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAA-T-GGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
180470 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATT-AAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
180534 GAAAAATGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
180599 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
180664 AAAATTTTGGAGATTGTTTTATC-TTTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAAGGTAA
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGG-AAAAGGTAA
180728 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA
388 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
*
180792 -ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
453 TATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
*
180856 GAGGTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
518 GAGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
180921 CAAAGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGA
583 CAAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGA
180985 AATTTTTGATTCAAGAATTATAGAA-
648 AATTTTTGATTCAAGAATTATAGAAG
181010 GTTAAGTAAAGGAGGC-ACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
181074 TTCGAGGACGAATTTTCTTTAAAGGA-GGGAGATTTGTAATATCCTAAAA-TCGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
181137 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATT-AAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
181201 G-AAAATGTTGATGTTGTA-TTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
181264 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
*
181329 AAAATTTTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
181394 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
181458 -TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
* *
181522 AGGTTTCAAATTGAAATCTTGG-AAA-AGTTAGCAATTGAAGTTAGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
*
181585 AAAGGGTTAGTT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
181649 ATTTTTGATTCAAGAATTATAGAAG
649 ATTTTTGATTCAAGAATTATAGAAG
* * *
181674 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATTAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * *
181739 TTCGAGGATGATTTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
181804 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
181869 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
181934 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
* *
181999 AAAATTTTGGAGATTGTTTTATCTTCTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
*
182064 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
182129 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
182194 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
182259 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
182324 ATTTATTGATTCAAGAATTATAGAAT
649 ATTT-TTGATTCAAGAATTATAGAAG
182350 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
182415 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
182480 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
182545 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
182610 AAGGAA-GATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
182674 AAATTTGGAGATTGTTTTATAC-TTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
326 AAATTTGGAGATTGTTTTAT-CTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
182738 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
182803 TTAAGGAAAGCTTAAGAT-GATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
*
182867 GGTTTCAAATTGAAATCTTGG-AAA-AGTTAGCAATTGAAGTT-GAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
*
182929 AA-GGTTAGTT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG-AA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
*
182991 TTCTTGATTCAAGAATTATAGAAG
650 TTTTTGATTCAAGAATTATAGAAG
* *
183015 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
183080 TTCGAGGATG-ATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCT-AAA-TCGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
183142 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
183207 G-AAAATGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
183271 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
183336 AAATTTTGGAGATTGTTTTATC-TTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
326 AAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
183400 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-A
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
183463 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
*
183528 GGTTTCAAATTGAAATCTTGG-AAA-AGTTAGCAATTGAAGTT-GAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
*
183590 AATGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
183654 TTTTTGATTCAAGAATTATAGAAG
650 TTTTTGATTCAAGAATTATAGAAG
183678 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * *
183743 TTCGAGGATGATTTTTCTTTAAAGGA-GGGAGATTTGTAATATCCTAAAA-TCGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
183806 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
183871 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
183935 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
184000 AAATTTGGAGATTGTTTTATC-TTTT-CTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
*
184063 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAGAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
*
184128 TAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
184193 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTT-TCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
184257 AGGGTT-ATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
184321 TTTTGATTCAAGAATTATAGAA-
651 TTTTGATTCAAGAATTATAGAAG
*
184343 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
184408 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
184473 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
184538 GAAAAATGTTGATGTTGGATTTAATAACAAAG-TTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
184602 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
184667 AAATTCTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
326 AAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
184732 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-A
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
184795 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
184860 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
184925 AA-GGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG-AA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
184987 TTTTTGATTCAAGAATTATAGAA-
650 TTTTTGATTCAAGAATTATAGAAG
* *
185010 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
185075 TTCGAGGATG-ATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
185139 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
185204 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
185269 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
185333 AAATTTGGAGATTGTTTTATC-TTTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
*
185397 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAGAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
*
185462 TAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
185527 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTT-GAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
185591 AGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
185655 TTTTGATTCAAGAATTATAGAA-
651 TTTTGATTCAAGAATTATAGAAG
185677 GTTAAGTAAAGGAGGC-ACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
**
185741 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATCGGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
185806 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
185871 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
185935 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
*
186000 AAAATTCTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGG-AAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
186064 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
186127 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
* *
186192 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTTGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
* *
186257 AAATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
186322 ATTTTTGATTCAAGAATTATAGAAG
649 ATTTTTGATTCAAGAATTATAGAAG
*
186347 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
186412 TTCGAGGACG-ATTTTCTTTAAAGGA-GGG-GATTTGTAATATCCTAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
186474 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
186539 GAAAAGTGTTGATGTT-GTTTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
186603 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
186667 AAATTTGGAGATTGTTTTATCTTCTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
*
186732 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAGAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
*
186797 TAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
*
186862 GTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
186927 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
*
186992 TTATTGATTCAAGAATTATAGAAT
651 TT-TTGATTCAAGAATTATAGAAG
187016 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
187081 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
187146 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
187211 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
187276 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
187341 AAATTTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
187406 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
187471 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
* *
187536 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTAGAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
* * *
187601 ATGGTTAGTTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
187666 TCTTTGATTCAAGAATTATAGAAG
651 T-TTTGATTCAAGAATTATAGAAG
*
187690 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * *
187755 TTCGAGGATGATTTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
187820 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
187885 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
187950 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
* *
188015 AAAATTTTGGAGATTGTTTTATCTTCTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
*
188080 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
188145 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
188210 AGGTTTCAAATTGAAATCTTGGAAAAGAG-TAG---TTGAAGTTGG-GGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
188270 AAA-GGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
188333 ATTTTTGATTCAAGAATTATAGAA-
649 ATTTTTGATTCAAGAATTATAGAAG
188357 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
188422 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGG-TAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
188486 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
188551 G-AAAATGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
188615 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
*
188680 AAAATTCTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
188745 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
188810 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
188875 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
188940 AAA-GGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
189004 ATTTATTGATTCAAGAATTATAGAAG
649 ATTT-TTGATTCAAGAATTATAGAAG
*
189030 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
189095 TTCGAGGACG-ATATTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGAC
66 TTCGAGGACGAAT-TTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGAC
189159 TAAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAA
130 TAAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAA
* *
189224 TGAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTC
195 TGAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTC
189289 TAAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA
260 TAAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA
* *
189354 GAAAATTTTGGAGATTGTTTTATCTTCTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAA
325 -AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAA
189419 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
388 GTTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA
189484 TATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
453 TATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAA
189549 GAGGTTTCAAATTGAAATCTTGG--AA-AGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
518 GAGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGT
189611 CAAAGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAG---ACATGG-AAATTTGATGA
583 CAAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGA
*
189671 AATTTATTGATTCAAGAATTATAGAAT
648 AATTT-TTGATTCAAGAATTATAGAAG
189698 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
189763 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
189828 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
189893 GAAAAA--TTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
189956 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
190021 AAATTTGGAGATTGTTTTATC-TTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
190085 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
190150 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
*
190215 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTT---GGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
190277 A-GGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
*
190340 TCTTTGATTCAAGAATTATAGAAT
651 T-TTTGATTCAAGAATTATAGAAG
* *
190364 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
190429 TTCGAGGACG-ATTTTCTTTAAAGGATGGGAGATTTGTAATATCCAAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
190493 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
190558 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
* *
190623 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTATTAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
*
190688 AAAATTCTGGAGATTGTTTTATCTTTTTCATCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
*
190753 TTGGTTGCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
190818 ATTAAGGAAAGCTTAAGATGGATTAAAACACAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
*
190883 AGGTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
190948 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
191013 ATTTATTGATTCAAGAATTATAGAAT
649 ATTT-TTGATTCAAGAATTATAGAAG
191039 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
191104 TTCGAGGACGAATTTTCTTTAAAGGATGGGAGATTTGTAATATCCAAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
191169 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
191234 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
191299 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGC-A-ACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
191362 AAAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGG-AAAGGTAAGT
325 AAAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
191426 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
191491 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
191556 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTT-GAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
191620 AAGGGTTAATT---AAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG-AA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
*
191681 TTTATTGATTCAAGAATTATAGAAT
650 TTT-TTGATTCAAGAATTATAGAAG
191706 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
191771 TTCGAGGACGAATTTTCTTTAAAGGA-GGGAGATTTGTAATATCCTAAAATT-GGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
191834 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCAT-AAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
191898 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
191962 AAGGAA-GATTTTATTTCTCCCTTTATAT---AGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
192023 AAATTTGGAGATTGTTTTATC--TTT--TCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
192084 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
*
192149 TAAGGAAAGCTTAAGATGGATTAAAACACAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
*
192214 GTTTCAAATTGAAATCTTGG-AAA-AGTTAGCAATTGAAGTT-GAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
*
192276 ATGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAT
586 A-GGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
192340 TTCTTTGATTCAAGAATTATAGAA-
650 TT-TTTGATTCAAGAATTATAGAAG
*
192364 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
192429 TTCGAGGACGAATTTTCTTTAAAGGA-GGGAGATTTGTAATATCC-AAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
192492 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
192557 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
192621 AAGGAA-GATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
192685 AAATTTTGGAGATTGTTTTATC-TTTTCCTC-TCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
326 AAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
192748 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
192813 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
*
192878 GGTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
192943 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
193008 TTCTTTGATTCAAGAATTATAGAAG
650 TT-TTTGATTCAAGAATTATAGAAG
* *
193033 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * *
193098 TTCGAGGATGATTTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
193163 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
193228 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
193292 AAGGAA-GATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
193356 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
193421 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-AT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
193484 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
193549 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTT-GAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
*
193613 A-GGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
193677 TTTTGATTCAAGAATTATAGAA-
651 TTTTGATTCAAGAATTATAGAAG
*
193699 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
193764 TTCGAGGACG-ATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
193827 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
193892 GAAAAGTGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
193957 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
194022 AAATTTGGAGATT-TTTTATC-TTTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
194085 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
194150 TAAGGAAAGCTTAAGAT-G-TTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
194213 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTT-GAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
*
194277 A-GGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG-AAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
194340 TTATTGATTCAAGAATTATAGAA-
651 TT-TTGATTCAAGAATTATAGAAG
* *
194363 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
194428 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
194492 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
194557 GAAAAGTGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
194622 AAGG-A--ATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
194684 AAAATTTGGAGATTGTTTTATC---TT-CTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
325 AAAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
194745 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-A
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
*
194808 TTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
194873 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTT-GAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
194937 AAGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
195001 TTTATTGATTCAAGAATTATAGAA-
650 TTT-TTGATTCAAGAATTATAGAAG
*
195025 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
195090 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
195154 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
195219 GAAAAATGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
195284 AAGGAATGATTTT-TTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGA-AAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
195347 AAATTTGGAGATTGTTTTATC-TTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
195411 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
195476 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
*
195541 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
195606 A-GGTTAATT---AA---A-A-GTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
*
195662 TTTTGATTCAAGAATTATAGAAT
651 TTTTGATTCAAGAATTATAGAAG
195685 GTTAAGTAAAGGAGGC-A-ATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* **
195748 TTCGAGGATGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATCGGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
195813 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
195878 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
195942 AAGGAA-GATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
196006 AAA-TTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
196070 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-A-
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
*
196132 TAAGGAAAGCTTAAGATGGATTAAAACACAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
* *
196197 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTTGAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
* *
196262 ATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
196327 TTTTGATTCAAGAATTATAGAAG
651 TTTTGATTCAAGAATTATAGAAG
* *
196350 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* *
196415 TTCGAGGACGAATTTTCTTTAAAGGATGGGAGATTTGTAATATCCAAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
196480 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
196545 GAAAAGTGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196610 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
196675 AAATTTGGAGATTGTTTTATC-TTTT-CTC-TCTC-TCTCGTAAGCTCCATGGCAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
196736 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAA-AT
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
*
196800 TAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
196865 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
*
196930 A-GGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG-AAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
196993 TTTTGATTCAAGAATTATAGAAG
651 TTTTGATTCAAGAATTATAGAAG
*
197016 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
197081 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAA-TCGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
197144 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
197209 G-AAAATGTTGATGTT-G-TTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
197271 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
*
197336 AAATTTTGGAGATTGTTTTATC-TTTTCATCTTCTCTTCTCGTAAGCTCCATGG-AAAGGTAAGT
326 AAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
197399 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-A
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
*
197462 TTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
197527 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTT-GAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
*
197591 AA-GGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
197655 TTTTTGATTCAAGAATTATAGAA-
650 TTTTTGATTCAAGAATTATAGAAG
197678 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
197743 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
197807 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
197872 G-AAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
197936 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
*
198001 AAAATTTTGGAGATTGTTTTATC-TTTTCATCTTCTCTTCTCGTAAGCTCCATGG-AAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
198064 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
198129 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
*
198194 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
198259 AAA-GGTTAATT--AAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
198321 ATTTTTGATTCAAGAATTATAGAAT
649 ATTTTTGATTCAAGAATTATAGAAG
*
198346 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
198411 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCC-AAAA-TCGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
198474 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
198539 G-AAAATGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
198603 AAGGAA-GATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
198667 AAATTTGGAGATTG-TTT-TCTTTTT-C-C-TCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
326 AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
198727 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAG-AAA-A-
391 GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
198789 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
456 TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
* * *
198854 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTAGAGGTTAAATTTGACTTTTCAA
521 GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
* * *
198919 ATGGTTAGTTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
586 AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
*
198984 TTATTGATTCAAGAATTATAGAAT
651 TT-TTGATTCAAGAATTATAGAAG
199008 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
** *
199073 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATCGGGGCTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
199138 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
199203 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
199268 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
199333 AAAATTCTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
199398 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
199463 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
199528 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
*
199593 AAAGGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
199658 ATTTATTGATTCAAGAATTATAGAAT
649 ATTT-TTGATTCAAGAATTATAGAAG
199684 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * * *
199749 TTCGAGGACAAATTTTCTTTAAAGGATGGGAGATTTGTAATATCCAAAAATTAGGAGTTACTGAC
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGG-GTTAGTGAC
199814 TAAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAA
130 TAAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAA
199879 TGAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTC
195 TGAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTC
199944 TAAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAA
260 TAAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA
200008 AAAATTTGGAGATTGTTTTATCTTTTTCCTCTT-TCTTCTCGTAAGCTCCATGG-AAAGGTAAGT
325 AAAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
200071 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
200136 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
* *
200201 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTTGAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
* *
200266 AATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
200331 TTTTTGATTCAAGAATTATAGAA-
650 TTTTTGATTCAAGAATTATAGAAG
* *
200354 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
200419 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGA-TT-TAATATCC-AAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
200481 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
200546 GAAAAATGTTGATGTT-GATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
200610 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
200675 AAATTTTGGAGATTGTTTTATC--TTT-CT-TTCTCTTCTTCGTAAGCTCCATGGAAAAGGTAAG
326 AAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTC-TCGTAAGCTCCATGGAAAAGGTAAG
*
200736 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
200801 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
200866 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
200931 AAAGGGTTAATT-AAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
200995 ATTTATTGATTCAAGAATTATAGAAT
649 ATTT-TTGATTCAAGAATTATAGAAG
201021 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
**
201086 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATCGGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
201151 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
201216 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
201281 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
201346 AAATTCTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
326 AAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
201411 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
201476 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
* *
201541 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTAGAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
* *
201606 AATGGTT-AGT----A--TAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
201664 TTCTTTGATTCAAGAATTATAGAAG
650 TT-TTTGATTCAAGAATTATAGAAG
* *
201689 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * *
201754 TTCGAGGATGATTTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
201819 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
201884 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
201949 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
* ** *
202014 AAAATTTTGGAGTTTGTTTTATCTTCATCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
* *
202079 -TGGTTCCAAGTTGGTTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
202143 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
202208 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
*
202273 AAAGGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
* *
202338 ATTATTGATTCAAGAATTAT--AAT
649 ATTTTTGATTCAAGAATTATAGAAG
202361 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
**
202426 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATCGGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
202491 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
202556 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
202621 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAG-AAAA
202686 AAAATTCT-G-GATTGTTTTATCTTTTT-C-CTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
202747 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
202812 ATTAAGGAAAGCTTAAGATGGATT-AAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
*
202876 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
*
202941 AAA-GGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATG-A
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
203004 ATTTTTGATTCAAGAATTATAGAAG
649 ATTTTTGATTCAAGAATTATAGAAG
* *
203029 GTTAAGTAAAGGAGGCATCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
*
203094 TTCGAGGACGAATTTTCTTTAAAGGA-GGGAGATTTGTAATATCCAAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
203158 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* * *
203223 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAACTGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
*
203288 AAGGAATGATTTTATTTCTCCCTTTATATAGGAGAGCAACA--TGGTAATAGAGAGAAAGAAAAA
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
203351 AAATTCTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
326 AAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGT
203416 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
390 TGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATA
*
203481 TTAAGGAAAGCTTAAGATGGATT-AAACACAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
455 TTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGA
* *
203545 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTTGAGGTTAAATTTGACTTGTCA
520 GGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCA
* *
203610 AATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
585 AAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAA
203675 TTCTTTGATTCAAGAATTATAGAAG
650 TT-TTTGATTCAAGAATTATAGAAG
* *
203700 GTTAAGTAAAGGAGGCAGCATGAGAACATTAGAAGGCATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * *
203765 TTCGAGGATGATTTTTCTTTAAAGGAGGGGAGATTTGTAATATCCCAAAATTAGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
203830 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* * *
203895 GAAAAGTGTTGATGTTGTATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAACTGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
* *
203960 AAGGAAGGATTTTATTTCACCCTTTATATAGGAGAGCAACATGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
* *
204025 AAAATTTTGGAGATTGTTTTATCTTCTTCCTCTTCTCTTCTCGTAAGCTCCATGGCAAAGGTAAG
325 AAAA-TTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
*
204090 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
204155 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
* *
204220 AGGTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTT
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
* *
204285 AAAGGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACAAGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
204350 ATTTATTGATTCAAGAATTATAGAAT
649 ATTT-TTGATTCAAGAATTATAGAAG
204376 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * **
204441 TTCGAGGACGAATTTTCTTTATAGGAGGGGAGATTTTTAATATCCTAAAATCGGGGTTAGTGACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
204506 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
*
204571 GAAAAATGTTGATGTTGGATTTAAGAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
204636 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
204701 AAAATTCTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
204766 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
204831 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
*
204896 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGCAATTGAAGTTGGAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
* *
204961 AAATGGTTAATTAAGAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
205026 ATTCTTTGATTCTAGAATTATAGAAG
649 ATT-TTTGATTCAAGAATTATAGAAG
* * * *
205052 GTTAAGTAAAGGAGGCAGCATGAGAACATTACAAGGCATGTTCTTATTTGTATGTGCAATGAAAA
1 GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
* * * *
205117 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGAATTGTAATATCCCAAAATTGGGGTTAGTAACT
66 TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
*
205182 AAATTGAAAGATTCTAATATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
131 AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
* *
205247 GAAAAGTGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGATCTTTTCT
196 GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
* *
205312 AAGGAAGAATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGCAATAGAGAGAAAGAAAAG
261 AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAA-
*
205377 AAAATTCTGGAGATTGTTTTATCTTTTTCCTCTTCTTTTCTCGTAAGCTCCATGGAAAAGGTAAG
325 AAAATT-TGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAG
*
205442 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAG
389 TTGGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAAT
*
205507 ATTAAGGAAAGCTTAAGATGTATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
454 ATTAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAG
* *
205572 AGGTTTCAAATTGAAATCTTGGAAAATAGTTAGTAATTGAAGTTGAAGGTTAAATTTGACTTGTC
519 AGGTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTC
* * * * * *
205637 AAATGGTTAATTAAGAAGTTAGAGGTTATAGAATTGAATTAAGAACACATGAAAAATTTGATAAA
584 AAAGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAA
*
205702 ATTCTTTAATTCAAGAATTATAG
649 ATT-TTTGATTCAAGAATTATAG
205725 TGAATTATGA
Statistics
Matches: 27923, Mismatches: 488, Indels: 615
0.96 0.02 0.02
Matches are distributed among these distances:
655 39 0.00
656 166 0.01
657 181 0.01
658 556 0.02
659 390 0.01
660 217 0.01
661 799 0.03
662 1408 0.05
663 1208 0.04
664 1868 0.07
665 2393 0.09
666 2449 0.09
667 2557 0.09
668 2932 0.11
669 1111 0.04
670 1225 0.04
671 699 0.03
672 1605 0.06
673 585 0.02
674 1416 0.05
675 1140 0.04
676 2690 0.10
677 289 0.01
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (673 bp):
GTTAAGTAAAGGAGGCAACATGAGAACATTAGAAGGTATGTTCTTATTGGTATGTGCAATGAAAA
TTCGAGGACGAATTTTCTTTAAAGGAGGGGAGATTTGTAATATCCTAAAATTAGGGTTAGTGACT
AAATTGAAAGATTCTAAAATTTAGTGATCAATCTCATAAAAGATTAAAAGTTTAGGGATTTAAAT
GAAAAATGTTGATGTTGGATTTAATAACAAAGTTTGAAAGTAATAAGGGTAAAATGGTCTTTTCT
AAGGAAGGATTTTATTTCTCCCTTTATATAGGAGAGCAACACGTGGTAATAGAGAGAAAGAAAAA
AAATTTGGAGATTGTTTTATCTTTTTCCTCTTCTCTTCTCGTAAGCTCCATGGAAAAGGTAAGTT
GGTTCCAAGTTGATTAATTCTTTTGTTTTAAAGTTGGTTTTGATTCTTAGAGTGATAGAAAATAT
TAAGGAAAGCTTAAGATGGATTAAAACTCAAAGATTATCAAGTTATGAGAGATTGAAAATAAGAG
GTTTCAAATTGAAATCTTGGAAAAGAGTTAGTAATTGAAGTTGGAGGTTAAATTTGACTTGTCAA
AGGGTTAATTAAAAAGTTAGATGTGATAGAATTGAATTAAGAACACATGGAAAATTTGATGAAAT
TTTTGATTCAAGAATTATAGAAG
Found at i:210702 original size:16 final size:17
Alignment explanation
Indices: 210674--210707 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
210664 CCTTTGCACA
210674 CTTTTGCTTTTTTTTTT
1 CTTTTGCTTTTTTTTTT
210691 CTTTTG-TTTTTTTTTT
1 CTTTTGCTTTTTTTTTT
210707 C
1 C
210708 ACTGAAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (17 bp):
CTTTTGCTTTTTTTTTT
Found at i:211891 original size:26 final size:28
Alignment explanation
Indices: 211852--211910 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
211842 TTGTATTCTG
* *
211852 AAAAATGAAGGAAAAATA-AAA-TAAAAT
1 AAAAATGAACG-AAAATAGAAATTAAAAA
211879 AAAAA-GAACGAAAATAGAAATTAAAAA
1 AAAAATGAACGAAAATAGAAATTAAAAA
211906 AAAAA
1 AAAAA
211911 ATTGGGTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.21
26 7 0.25
27 15 0.54
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (28 bp):
AAAAATGAACGAAAATAGAAATTAAAAA
Found at i:217814 original size:8 final size:8
Alignment explanation
Indices: 217774--217820 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 8
217764 TCAAAGTTTT
217774 GGTCAACAG
1 GGTCAAC-G
217783 TGGTCAACG
1 -GGTCAACG
217792 ACGGTCAAC-
1 --GGTCAACG
217801 GGTCAACG
1 GGTCAACG
217809 GGTCAACG
1 GGTCAACG
217817 GGTC
1 GGTC
217821 GATTCAACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
7 7 0.21
8 12 0.35
9 1 0.03
10 14 0.41
ACGTcount: A:0.26, C:0.26, G:0.34, T:0.15
Consensus pattern (8 bp):
GGTCAACG
Found at i:217814 original size:15 final size:16
Alignment explanation
Indices: 217784--217817 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
217774 GGTCAACAGT
217784 GGTCAACGACGGTCAAC
1 GGTCAACGA-GGTCAAC
217801 GGTCAACG-GGTCAAC
1 GGTCAACGAGGTCAAC
217816 GG
1 GG
217818 GTCGATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.26, C:0.26, G:0.35, T:0.12
Consensus pattern (16 bp):
GGTCAACGAGGTCAAC
Found at i:217838 original size:18 final size:18
Alignment explanation
Indices: 217815--217888 Score: 77
Period size: 18 Copynumber: 4.4 Consensus size: 18
217805 AACGGGTCAA
*
217815 CGGGTCGATTCAACGGGT
1 CGGGTCGAGTCAACGGGT
*
217833 CGGGTCGGGTCAACGGGT
1 CGGGTCGAGTCAACGGGT
217851 CGGGT--A---AACGGGT
1 CGGGTCGAGTCAACGGGT
* *
217864 CGGGTCGGGTAAACGGGT
1 CGGGTCGAGTCAACGGGT
217882 CGGGTCG
1 CGGGTCG
217889 GGTTGTGACC
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
13 12 0.26
18 35 0.74
ACGTcount: A:0.15, C:0.20, G:0.47, T:0.18
Consensus pattern (18 bp):
CGGGTCGAGTCAACGGGT
Found at i:217849 original size:13 final size:13
Alignment explanation
Indices: 217833--217869 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
217823 TTCAACGGGT
217833 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
*
217846 CGGGTCGGGTAAA
1 CGGGTCGGGTCAA
217859 CGGGTCGGGTC
1 CGGGTCGGGTC
217870 GGGTAAACGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.22, G:0.49, T:0.16
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:217884 original size:31 final size:31
Alignment explanation
Indices: 217807--217886 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
217797 CAACGGTCAA
** *
217807 CGGGTCAACGGGTCGATTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
217838 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
*
217869 CGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
217887 CGGGTTGTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.16, C:0.20, G:0.46, T:0.17
Consensus pattern (31 bp):
CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
Found at i:217889 original size:18 final size:18
Alignment explanation
Indices: 217846--217891 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
217836 GTCGGGTCAA
217846 CGGGTCGGGTAAACGGGT
1 CGGGTCGGGTAAACGGGT
217864 CGGGTCGGGTAAACGGGT
1 CGGGTCGGGTAAACGGGT
217882 CGGGTCGGGT
1 CGGGTCGGGT
217892 TGTGACCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.17, G:0.52, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTAAACGGGT
Found at i:223007 original size:8 final size:8
Alignment explanation
Indices: 222967--223013 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 8
222957 TCAAAGTTTT
222967 GGTCAACAG
1 GGTCAAC-G
222976 TGGTCAACG
1 -GGTCAACG
222985 ACGGTCAAC-
1 --GGTCAACG
222994 GGTCAACG
1 GGTCAACG
223002 GGTCAACG
1 GGTCAACG
223010 GGTC
1 GGTC
223014 GAGTCAACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
7 7 0.21
8 12 0.35
9 1 0.03
10 14 0.41
ACGTcount: A:0.26, C:0.26, G:0.34, T:0.15
Consensus pattern (8 bp):
GGTCAACG
Found at i:223007 original size:15 final size:16
Alignment explanation
Indices: 222977--223010 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
222967 GGTCAACAGT
222977 GGTCAACGACGGTCAAC
1 GGTCAACGA-GGTCAAC
222994 GGTCAACG-GGTCAAC
1 GGTCAACGAGGTCAAC
223009 GG
1 GG
223011 GTCGAGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.26, C:0.26, G:0.35, T:0.12
Consensus pattern (16 bp):
GGTCAACGAGGTCAAC
Found at i:223031 original size:18 final size:18
Alignment explanation
Indices: 222994--223071 Score: 111
Period size: 18 Copynumber: 4.2 Consensus size: 18
222984 GACGGTCAAC
222994 GGTCAACGGGTCAACGGGTCG
1 GGTCAACGGGT---CGGGTCG
*
223015 AGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
223033 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
223051 GGTAAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
223069 GGT
1 GGT
223072 TGTGACCGGT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
18 44 0.81
21 10 0.19
ACGTcount: A:0.15, C:0.21, G:0.47, T:0.17
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:223049 original size:13 final size:13
Alignment explanation
Indices: 223000--223031 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
222990 CAACGGTCAA
223000 CGGGTCAACGGGT
1 CGGGTCAACGGGT
*
223013 CGAGTCAACGGGT
1 CGGGTCAACGGGT
223026 CGGGTC
1 CGGGTC
223032 GGGTCAACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.25, G:0.44, T:0.16
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:226393 original size:21 final size:20
Alignment explanation
Indices: 226364--226473 Score: 57
Period size: 21 Copynumber: 5.5 Consensus size: 20
226354 CTTCCAAATT
*
226364 CGTTACGATAGTTGAAGTTC
1 CGTTGCGATAGTTGAAGTTC
* * *
226384 GCGTTGCGAT-TTTCCAAATT-
1 -CGTTGCGATAGTT-GAAGTTC
*
226404 CGTTGCGATAGTCGAAGTTC
1 CGTTGCGATAGTTGAAGTTC
* * *
226424 ACGTTGCGAT-TTTCCAAATT-
1 -CGTTGCGATAGTT-GAAGTTC
**
226444 CGTTGCGATAGCCGAAGTTC
1 CGTTGCGATAGTTGAAGTTC
226464 GCGTTGCGAT
1 -CGTTGCGAT
226474 TTATTCCAAA
Statistics
Matches: 64, Mismatches: 17, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
19 26 0.41
20 4 0.06
21 34 0.53
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGTTGAAGTTC
Found at i:226494 original size:42 final size:41
Alignment explanation
Indices: 226355--226689 Score: 480
Period size: 40 Copynumber: 8.2 Consensus size: 41
226345 CAACGCGATC
* *
226355 TTCCAAATTCGTTACGATAGTTGAAGTTCGCGTTGCGA-TT
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
*
226395 TTCCAAATTCGTTGCGATAGTCGAAGTTCACGTTGCGA-TT
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
*
226435 TTCCAAATTCGTTGCGATAGCCGAAGTTCGCGTTGCGATTT
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
* *
226476 ATTCCAAATTCGTTGCGATAGTCGAAGTTCTCGTTGAGA-TT
1 -TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
* *
226517 TTCCAAATTCGTTGCGATAGTCGAAGTTCGCATTGC-AATT
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
* *
226557 TTCTAAATTCGTTGCGATAGTCAAAGTTCGCGTTGCGATTT
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
* * *
226598 ATTTCAAATTCGTTGCGATAGTCGAAGTTTGCGTTGTGATTT
1 -TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
*
226640 ATTCCAAATTCGTTGCGATAGTCGAAGTTTGCGTTGCGATTT
1 -TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
226682 ATTCCAAA
1 -TTCCAAA
226690 ATCGCAACGA
Statistics
Matches: 268, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.00
40 141 0.53
41 7 0.03
42 119 0.44
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (41 bp):
TTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTT
Found at i:226572 original size:122 final size:122
Alignment explanation
Indices: 226355--226668 Score: 486
Period size: 122 Copynumber: 2.6 Consensus size: 122
226345 CAACGCGATC
* * * *
226355 TTCCAAATTCGTTACGATAGTTGAAGTTCGCGTTGCGATTTTCCAAATTCGTTGCGATAGTCGAA
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCTCGTTGAGATTTTCCAAATTCGTTGCGATAGTCGAA
* * *
226420 GTTCACGTTGCGATTTTCCAAATTCGTTGCGATAGCCGAAGTTCGCGTTGCGATTTA
66 GTTCACATTGCAATTTTCCAAATTCGTTGCGATAGCCAAAGTTCGCGTTGCGATTTA
226477 TTCCAAATTCGTTGCGATAGTCGAAGTTCTCGTTGAGATTTTCCAAATTCGTTGCGATAGTCGAA
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCTCGTTGAGATTTTCCAAATTCGTTGCGATAGTCGAA
* * *
226542 GTTCGCATTGCAATTTTCTAAATTCGTTGCGATAGTCAAAGTTCGCGTTGCGATTTA
66 GTTCACATTGCAATTTTCCAAATTCGTTGCGATAGCCAAAGTTCGCGTTGCGATTTA
* *
226599 TTTCAAATTCGTTGCGATAGTCGAAGTT-TGCGTTGTGATTTATTCCAAATTCGTTGCGATAGTC
1 TTCCAAATTCGTTGCGATAGTCGAAGTTCT-CGTTGAGA-TT-TTCCAAATTCGTTGCGATAGTC
226663 GAAGTT
63 GAAGTT
226669 TGCGTTGCGA
Statistics
Matches: 177, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
121 1 0.01
122 146 0.82
123 2 0.01
124 28 0.16
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (122 bp):
TTCCAAATTCGTTGCGATAGTCGAAGTTCTCGTTGAGATTTTCCAAATTCGTTGCGATAGTCGAA
GTTCACATTGCAATTTTCCAAATTCGTTGCGATAGCCAAAGTTCGCGTTGCGATTTA
Found at i:226794 original size:21 final size:21
Alignment explanation
Indices: 226768--226812 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
226758 ACGTGTTGAA
226768 GACACGTATTACCACGACCAC
1 GACACGTATTACCACGACCAC
*
226789 GACACGTATTACCATGACCAC
1 GACACGTATTACCACGACCAC
226810 GAC
1 GAC
226813 CACGACCCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.36, G:0.16, T:0.16
Consensus pattern (21 bp):
GACACGTATTACCACGACCAC
Found at i:227333 original size:6 final size:6
Alignment explanation
Indices: 227322--227346 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
227312 TCGTCTCGTC
227322 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
227347 AATATGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:227488 original size:42 final size:42
Alignment explanation
Indices: 227439--227662 Score: 394
Period size: 42 Copynumber: 5.3 Consensus size: 42
227429 TGCGATTTTG
* *
227439 GACTATCGCAACGAATTTGGAATAAATCGCAATGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
227481 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
227523 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
227565 GACTATCGCAACGAACTTGGAATAAATCGCAACGCTAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
227607 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
227649 GACTATCGCAACGA
1 GACTATCGCAACGA
227663 GAACTTCGAC
Statistics
Matches: 173, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 173 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
Found at i:227708 original size:84 final size:80
Alignment explanation
Indices: 227439--227688 Score: 340
Period size: 84 Copynumber: 3.0 Consensus size: 80
227429 TGCGATTTTG
* *
227439 GACTATCGCAACGAATTTGGAATAAATCGCAATGCGAACTTCGACTATCGCAACGAACTTGGAAT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAT
227504 AAATCGCAACGCGAACTTT
66 -AATCGCAA--CGAA-TTT
*
227523 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAT
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAT
*
227588 AAATCGCAACGCTAACTTC
66 -AATCGCAACG--AA-TTT
* *
227607 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAGAACTTCGA
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAC--GAACTTGGA
*
227672 CT-ATCGCAACGAATTT
64 ATAATCGCAACGAATTT
227688 G
1 G
227689 GAAAATCGCA
Statistics
Matches: 155, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
81 3 0.02
82 4 0.03
84 139 0.90
86 9 0.06
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (80 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAAT
AATCGCAACGAATTT
Found at i:227708 original size:126 final size:124
Alignment explanation
Indices: 227443--227701 Score: 369
Period size: 126 Copynumber: 2.1 Consensus size: 124
227433 ATTTTGGACT
* *
227443 ATCGCAACGAATTTGGAATAAATCGCAATGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
* * * **
227508 CGCAACGCGAACTTTGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACT
66 CGCAACGCGAACTTGGACTATCGCAACGAACTTCGAAT-AATCGCAAC-CGAACTTCGAAA
*
227569 ATCGCAACGAACTTGGAATAAATCGCAACGCTAACTTCGACTATCGCAACGAACTTGGAATAAAT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
* * *
227634 CGCAACGCGAACTTGGACTATCGCAACGAGAACTTCGACT-ATCGCAA-CGAATTTGGAAA
66 CGCAACGCGAACTTGGACTATCGCAAC--GAACTTCGAATAATCGCAACCGAACTTCGAAA
227693 ATCGCAACG
1 ATCGCAACG
227702 CGAACTTCGA
Statistics
Matches: 120, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
124 17 0.14
126 95 0.79
128 8 0.07
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (124 bp):
ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
CGCAACGCGAACTTGGACTATCGCAACGAACTTCGAATAATCGCAACCGAACTTCGAAA
Found at i:231467 original size:24 final size:22
Alignment explanation
Indices: 231405--231497 Score: 77
Period size: 21 Copynumber: 4.2 Consensus size: 22
231395 TAGCTCGTAA
*
231405 TTTGCACTGAAGTGCCACATA-
1 TTTGCACCGAAGTGCCACATAG
*
231426 ATTGTC-CCGAAG-GACCACATAG
1 TTTG-CACCGAAGTG-CCACATAG
*
231448 TTTTTGCATCGAAGTGCCACATAAG
1 --TTTGCACCGAAGTGCCACAT-AG
*
231473 TTTGCACCGGAGTGCCACATA-
1 TTTGCACCGAAGTGCCACATAG
231494 TTTG
1 TTTG
231498 TCTCAAAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
20 1 0.02
21 19 0.33
22 2 0.03
23 19 0.33
24 14 0.24
25 3 0.05
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (22 bp):
TTTGCACCGAAGTGCCACATAG
Found at i:231486 original size:23 final size:23
Alignment explanation
Indices: 231405--231493 Score: 80
Period size: 23 Copynumber: 3.9 Consensus size: 23
231395 TAGCTCGTAA
*
231405 TTTGCACTGAAGTGCCACATAA-
1 TTTGCACCGAAGTGCCACATAAG
231427 -TTGTC-CCGAAG-GACCACAT-AG
1 TTTG-CACCGAAGTG-CCACATAAG
*
231448 TTTTTGCATCGAAGTGCCACATAAG
1 --TTTGCACCGAAGTGCCACATAAG
*
231473 TTTGCACCGGAGTGCCACATA
1 TTTGCACCGAAGTGCCACATA
231494 TTTGTCTCAA
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
20 2 0.04
21 14 0.26
22 1 0.02
23 20 0.37
24 14 0.26
25 3 0.06
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAAG
Found at i:231511 original size:21 final size:21
Alignment explanation
Indices: 231487--231541 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
231477 CACCGGAGTG
231487 CCACATATTTGTCTCAAAGGA
1 CCACATATTTGTCTCAAAGGA
* *
231508 CCACATATTTGTCTTAAATGA
1 CCACATATTTGTCTCAAAGGA
*
231529 CCACATAATTGTC
1 CCACATATTTGTC
231542 CCGGAATACC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (21 bp):
CCACATATTTGTCTCAAAGGA
Found at i:232417 original size:54 final size:54
Alignment explanation
Indices: 232335--232443 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
232325 GCATTCGATG
232335 TTTGCATCTTAAAAATGGTATCAATACCATTCTTTGGGTATCGATACTACCCTT
1 TTTGCATCTTAAAAATGGTATCAATACCATTCTTTGGGTATCGATACTACCCTT
* *
232389 TTTGCATCTTAAAAATGGTATCGATACCATTCTTTGGGTATTGATACTACCCTT
1 TTTGCATCTTAAAAATGGTATCAATACCATTCTTTGGGTATCGATACTACCCTT
232443 T
1 T
232444 ACAGTATCGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (54 bp):
TTTGCATCTTAAAAATGGTATCAATACCATTCTTTGGGTATCGATACTACCCTT
Found at i:237149 original size:21 final size:23
Alignment explanation
Indices: 237058--237141 Score: 95
Period size: 23 Copynumber: 3.7 Consensus size: 23
237048 TAACTCGTAA
237058 TTTGCACCGAAGTGCCACATAA-
1 TTTGCACCGAAGTGCCACATAAG
* *
237080 TTAT-C-CCGAAATACCACAT-AG
1 TT-TGCACCGAAGTGCCACATAAG
237101 TTTTGCACCGAAGTGCCACATAAG
1 -TTTGCACCGAAGTGCCACATAAG
*
237125 TTTGCACCGGAGTGCCA
1 TTTGCACCGAAGTGCCA
237142 TATATTTGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
20 1 0.02
21 13 0.25
22 6 0.12
23 29 0.57
24 2 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAAG
Found at i:238075 original size:21 final size:23
Alignment explanation
Indices: 238046--238104 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 23
238036 CCATTCTTGG
* *
238046 GTATTGATACTACCCTT-TACA-
1 GTATCGATACTACCCTTCAACAT
238067 GTATCGATAC--CCCTTCAACAT
1 GTATCGATACTACCCTTCAACAT
238088 GTATCGATACTACCCTT
1 GTATCGATACTACCCTT
238105 AATAATTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 5 0.16
20 3 0.09
21 19 0.59
23 5 0.16
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (23 bp):
GTATCGATACTACCCTTCAACAT
Found at i:241901 original size:34 final size:34
Alignment explanation
Indices: 241856--241922 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
241846 AATAGGAATT
*
241856 ACAACTTCTCTC-GATCTAACAAGGAGAAAACAATG
1 ACAACTTCTCTCTGA--TAAAAAGGAGAAAACAATG
241891 ACAA-TTCTCTCTTGATAAAAAGGAGAAAACAA
1 ACAACTTCTCTC-TGATAAAAAGGAGAAAACAA
241923 CTCTCAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 23 0.79
35 4 0.14
36 2 0.07
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.21
Consensus pattern (34 bp):
ACAACTTCTCTCTGATAAAAAGGAGAAAACAATG
Found at i:245720 original size:34 final size:34
Alignment explanation
Indices: 245675--245741 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
245665 AATAGGAATT
*
245675 ACAACTTCTCTC-GATCTAACAAGGAGAAAACAATG
1 ACAACTTCTCTCTGA--TAAAAAGGAGAAAACAATG
245710 ACAA-TTCTCTCTTGATAAAAAGGAGAAAACAA
1 ACAACTTCTCTC-TGATAAAAAGGAGAAAACAA
245742 CTCTCAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 23 0.79
35 4 0.14
36 2 0.07
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.21
Consensus pattern (34 bp):
ACAACTTCTCTCTGATAAAAAGGAGAAAACAATG
Found at i:248231 original size:60 final size:59
Alignment explanation
Indices: 248160--248271 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 59
248150 GCTAGGTGAT
* * *
248160 CATTTTGTAACTTTTAATAGTCAGG-AGACTCAACAAAGTAACATCCTATAGTTAGATGAC
1 CATTTTATAACTTTTAATAGTC-GGAAGACTCAACAAAATAACA-CCTAAAGTTAGATGAC
248220 CATTTTATAACTTTTAATAGTCGGAAGACTCAACAAAATAACACCTAAAGTT
1 CATTTTATAACTTTTAATAGTCGGAAGACTCAACAAAATAACACCTAAAGTT
248272 GGGGGACCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
59 10 0.21
60 38 0.79
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (59 bp):
CATTTTATAACTTTTAATAGTCGGAAGACTCAACAAAATAACACCTAAAGTTAGATGAC
Found at i:248304 original size:2 final size:2
Alignment explanation
Indices: 248297--248337 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
248287 TACTTTTGAC
248297 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
248338 CACCCTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:254093 original size:20 final size:20
Alignment explanation
Indices: 254068--254114 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
254058 GTGATGTAAA
254068 GGGAAGGACGAGG-GGAAGAG
1 GGGAAGGA-GAGGAGGAAGAG
*
254088 GGGAA-GAGGGGAAGGAAGAG
1 GGGAAGGAGAGG-AGGAAGAG
254108 GGGAAGG
1 GGGAAGG
254115 GATGAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 3 0.13
19 2 0.09
20 17 0.74
21 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.62, T:0.00
Consensus pattern (20 bp):
GGGAAGGAGAGGAGGAAGAG
Found at i:254113 original size:8 final size:8
Alignment explanation
Indices: 254077--254101 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
254067 AGGGAAGGAC
254077 GAGGGGAA
1 GAGGGGAA
254085 GAGGGGAA
1 GAGGGGAA
254093 GAGGGGAA
1 GAGGGGAA
254101 G
1 G
254102 GAAGAGGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (8 bp):
GAGGGGAA
Found at i:264053 original size:16 final size:16
Alignment explanation
Indices: 264032--264086 Score: 94
Period size: 16 Copynumber: 3.5 Consensus size: 16
264022 AAGCCGAGTC
*
264032 GAGCTCGAGTATCGTT
1 GAGCTCGAGTATCGCT
264048 GAGCTCGAGTATCGCT
1 GAGCTCGAGTATCGCT
264064 GAGCTCGAGTATCGCT
1 GAGCTCGAGTATCGCT
264080 G-GCTCGA
1 GAGCTCGA
264087 CTCGACTCGA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
15 6 0.16
16 32 0.84
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (16 bp):
GAGCTCGAGTATCGCT
Found at i:265814 original size:42 final size:42
Alignment explanation
Indices: 265704--265947 Score: 240
Period size: 42 Copynumber: 5.8 Consensus size: 42
265694 ATAAATCAAG
* * * *
265704 ATCTATAGCGGCGTTTTTGGAACAAGCGCCGTAAAAAGTCAT
1 ATCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAT
* *** ** * * *
265746 ATTTATAGCACCGTTTTTTTATACAAACGCCACAAAAGGTTAG
1 ATCTATAGTGGCGTTTTTGGA-ACAAACGCCGCAAAAGGTCAT
* *
265789 ATCTATTGTAGCGTTTTTGGAACAAACGCCGCAAAAGGTCAT
1 ATCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAT
* * * *
265831 ATCTATAGTGGCATTTTTGG-ACAAACGCTGGAAAAGGTCAAA
1 ATCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAGGTC-AT
* * *
265873 ATCTATAGCGGCGTTTTTGAAACAAACACCGCAAAAGGTCAT
1 ATCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAT
265915 ATCTATAGCT-GCGTTTTTGGATACAAACGCCGC
1 ATCTATAG-TGGCGTTTTTGGA-ACAAACGCCGC
265948 TAATTACCTT
Statistics
Matches: 161, Mismatches: 36, Indels: 9
0.78 0.17 0.04
Matches are distributed among these distances:
41 17 0.11
42 88 0.55
43 56 0.35
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (42 bp):
ATCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAT
Found at i:269082 original size:41 final size:41
Alignment explanation
Indices: 269037--269390 Score: 313
Period size: 41 Copynumber: 8.6 Consensus size: 41
269027 GTAAATTTGT
* ** * *
269037 GGCGTTTGTACAAAAATACCACTAAAACACGTGTCTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAATACGAGTCTATAGC
* *
269078 GGCGTTTGTAATTAAAAACGCCACTAAAACAAGAGTCTATAGC
1 GGCGTTTGT-A-TAAAAACGCCACTAAAATACGAGTCTATAGC
* ** * * *
269121 GGCGTTTTTATAAAAAAACCACTAAAGTACTAGTCTTTA--
1 GGCGTTTGTATAAAAACGCCACTAAAATACGAGTCTATAGC
* * * *
269160 -GCATTTATATAAAAACGCCACTAAAGTACGAGTCTTTAGC
1 GGCGTTTGTATAAAAACGCCACTAAAATACGAGTCTATAGC
* * * *
269200 GGCGTTTGTACAAAAATGCCACTAAAATACGAATCTATAAC
1 GGCGTTTGTATAAAAACGCCACTAAAATACGAGTCTATAGC
* * * *
269241 GGCATTTGTAATTAAAAA-GCTACTAAAACACAAGTCTATAGC
1 GGCGTTTGT-A-TAAAAACGCCACTAAAATACGAGTCTATAGC
* * * *
269283 GGCGTTTGTATAAAAATGCCACTAAAGTACAAGTCTATAAC
1 GGCGTTTGTATAAAAACGCCACTAAAATACGAGTCTATAGC
* * * *
269324 AGCGTTTGTATAAAAACGCCACTGAAATGC-ATGTCTATAAC
1 GGCGTTTGTATAAAAACGCCACTAAAATACGA-GTCTATAGC
* *
269365 GGCGTTTTTATAAAAACGCCGCTAAA
1 GGCGTTTGTATAAAAACGCCACTAAA
269391 GTACTACTCT
Statistics
Matches: 257, Mismatches: 47, Indels: 18
0.80 0.15 0.06
Matches are distributed among these distances:
38 33 0.13
40 7 0.03
41 148 0.58
42 30 0.12
43 39 0.15
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (41 bp):
GGCGTTTGTATAAAAACGCCACTAAAATACGAGTCTATAGC
Found at i:269285 original size:83 final size:82
Alignment explanation
Indices: 269037--269390 Score: 324
Period size: 83 Copynumber: 4.3 Consensus size: 82
269027 GTAAATTTGT
* * * ** * *
269037 GGCGTTTGTACAAAAATACCACTAAAACACGTGTCTATAGCGGCGTTTGTAATTAAAAACGCCAC
1 GGCGTTTGTATAAAAATGCCACTAAAATACGAATCTATAACGGCATTTGT-A-TAAAAACGCCAC
269102 TAAAACA-AGAGTCTATAGC
64 TAAAACACA-AGTCTATAGC
* ** * * * * *
269121 GGCGTTTTTATAAAAAAACCACTAAAGTACTAGTCT-TTA--GCATTTATATAAAAACGCCACTA
1 GGCGTTTGTATAAAAATGCCACTAAAATACGAATCTATAACGGCATTTGTATAAAAACGCCACTA
** * *
269183 AAGTACGAGTCTTTAGC
66 AAACACAAGTCTATAGC
* *
269200 GGCGTTTGTACAAAAATGCCACTAAAATACGAATCTATAACGGCATTTGTAATTAAAAA-GCTAC
1 GGCGTTTGTATAAAAATGCCACTAAAATACGAATCTATAACGGCATTTGT-A-TAAAAACGCCAC
269264 TAAAACACAAGTCTATAGC
64 TAAAACACAAGTCTATAGC
* * *
269283 GGCGTTTGTATAAAAATGCCACTAAAGTAC-AAGTCTATAACAGCGTTTGTATAAAAACGCCACT
1 GGCGTTTGTATAAAAATGCCACTAAAATACGAA-TCTATAACGGCATTTGTATAAAAACGCCACT
* ** * *
269347 GAAATGCATGTCTATAAC
65 AAAACACAAGTCTATAGC
* * *
269365 GGCGTTTTTATAAAAACGCCGCTAAA
1 GGCGTTTGTATAAAAATGCCACTAAA
269391 GTACTACTCT
Statistics
Matches: 220, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
79 55 0.25
80 3 0.01
81 12 0.05
82 51 0.23
83 64 0.29
84 35 0.16
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (82 bp):
GGCGTTTGTATAAAAATGCCACTAAAATACGAATCTATAACGGCATTTGTATAAAAACGCCACTA
AAACACAAGTCTATAGC
Found at i:269307 original size:162 final size:165
Alignment explanation
Indices: 269037--269346 Score: 448
Period size: 163 Copynumber: 1.9 Consensus size: 165
269027 GTAAATTTGT
** * *
269037 GGCGTTTGTACAAAAATACCACTAAAACACGTGTCTATAGCGGCGTTTGTAATTAAAAACGCCAC
1 GGCGTTTGTACAAAAATACCACTAAAACACGAATCTATAACGGCATTTGTAATTAAAAACGCCAC
* * *
269102 TAAAACAAGAGTCTATAGCGGCGTTTTTATAAAAAAACCACTAAAGTACTAGTCT-T-TAGCATT
66 TAAAACAAGAGTCTATAGCGGCGTTTGTATAAAAAAACCACTAAAGTACAAGTCTATACAGCATT
269165 TATATAAAAACGCCACTAAAGTACGAGTCTTTAGC
131 TATATAAAAACGCCACTAAAGTACGAGTCTTTAGC
* * *
269200 GGCGTTTGTACAAAAATGCCACTAAAATACGAATCTATAACGGCATTTGTAATTAAAAA-GCTAC
1 GGCGTTTGTACAAAAATACCACTAAAACACGAATCTATAACGGCATTTGTAATTAAAAACGCCAC
** *
269264 TAAAACACA-AGTCTATAGCGGCGTTTGTATAAAAATGCCACTAAAGTACAAGTCTATAACAGCG
66 TAAAACA-AGAGTCTATAGCGGCGTTTGTATAAAAAAACCACTAAAGTACAAGTCTAT-ACAGCA
*
269328 TTTGTATAAAAACGCCACT
129 TTTATATAAAAACGCCACT
269347 GAAATGCATG
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
162 53 0.41
163 55 0.43
165 21 0.16
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (165 bp):
GGCGTTTGTACAAAAATACCACTAAAACACGAATCTATAACGGCATTTGTAATTAAAAACGCCAC
TAAAACAAGAGTCTATAGCGGCGTTTGTATAAAAAAACCACTAAAGTACAAGTCTATACAGCATT
TATATAAAAACGCCACTAAAGTACGAGTCTTTAGC
Done.