Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6287495
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 33
Found at i:2492 original size:16 final size:16
Alignment explanation
Indices: 2471--2501 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2461 ACCTTATTTT
2471 TATTTTAATGAATGAA
1 TATTTTAATGAATGAA
*
2487 TATTTTAATGCATGA
1 TATTTTAATGAATGA
2502 TTTGGAAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (16 bp):
TATTTTAATGAATGAA
Found at i:3944 original size:15 final size:15
Alignment explanation
Indices: 3907--3945 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
3897 CTACTAATAG
*
3907 TGACAAAATTAATTT
1 TGACAAAATTAAATT
*
3922 TGAGAAAATTAAATT
1 TGACAAAATTAAATT
*
3937 TGTCAAAAT
1 TGACAAAAT
3946 AGTAGCAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (15 bp):
TGACAAAATTAAATT
Found at i:11646 original size:13 final size:13
Alignment explanation
Indices: 11615--11639 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11605 CGTCGAGATG
11615 ATAAATTTTAATA
1 ATAAATTTTAATA
11628 ATAAATTTTAAT
1 ATAAATTTTAAT
11640 TAAAAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAAATTTTAATA
Found at i:14021 original size:185 final size:186
Alignment explanation
Indices: 13696--14087 Score: 635
Period size: 185 Copynumber: 2.1 Consensus size: 186
13686 TTTTCTAATT
* * * * * *
13696 TATATAA-AAATTAAATATTTTATAATTCAAAAAAACAGTTTATAATTAATTTTAATAATATATA
1 TATATAATATATTTAATATTTTATAACTCAAAAAAACAATTTACAATTAATTTAAATAATATATA
*
13760 ATTATAAAATAAAAATTTTATATAATTTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
66 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
* *
13825 TTAGATCTTAAATTATTAATTGGGTTTTAAATAGTTTGGGC-GAGTTCATATGTTA
131 TTAGATCTTAAATTATTAATTGAGTTTTAAATAGTTTGGGCTGAGCTCATATGTTA
* * *
13880 TATATAATATATTTAATATTTTTTAACTCAGAAAAATAATTTACAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTATAACTCAAAAAAACAATTTACAATTAATTTAAATAATATATA
13945 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
66 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
* *
14010 TTGGATCTTAAATTATTAATTGAGTTTTAAATGGTTTGGGCTGAGCTCATATGTTA
131 TTAGATCTTAAATTATTAATTGAGTTTTAAATAGTTTGGGCTGAGCTCATATGTTA
*
14066 TATATAATATATTTAAAATTTT
1 TATATAATATATTTAATATTTT
14088 CGGTTAATTA
Statistics
Matches: 191, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
184 7 0.04
185 150 0.79
186 34 0.18
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46
Consensus pattern (186 bp):
TATATAATATATTTAATATTTTATAACTCAAAAAAACAATTTACAATTAATTTAAATAATATATA
ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
TTAGATCTTAAATTATTAATTGAGTTTTAAATAGTTTGGGCTGAGCTCATATGTTA
Found at i:14667 original size:2 final size:2
Alignment explanation
Indices: 14662--14695 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
14652 ATGATGTGTG
* *
14662 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14696 ACACCTATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:19674 original size:34 final size:35
Alignment explanation
Indices: 19636--19738 Score: 113
Period size: 36 Copynumber: 2.9 Consensus size: 35
19626 AGAGGTTCTC
*
19636 TTTGAAAAACAGA-A-GAAGAAGAAGAAGAAGTTTT
1 TTTG-AAAACAGAGATGAAAAAGAAGAAGAAGTTTT
*
19670 TTTGATAACAGAGATTGGAAAAAGAAGAAGAAG-TTT
1 TTTGAAAACAGAGA-T-GAAAAAGAAGAAGAAGTTTT
*
19706 TTTGATAACAGAGATTGGAAAAAGAAGAAGAAG
1 TTTGAAAACAGAGA-T-GAAAAAGAAGAAGAAG
19739 AAGAATAAGA
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
33 7 0.11
34 5 0.08
36 36 0.57
37 15 0.24
ACGTcount: A:0.50, C:0.03, G:0.25, T:0.21
Consensus pattern (35 bp):
TTTGAAAACAGAGATGAAAAAGAAGAAGAAGTTTT
Found at i:19776 original size:39 final size:39
Alignment explanation
Indices: 19651--19813 Score: 233
Period size: 45 Copynumber: 4.1 Consensus size: 39
19641 AAAACAGAAG
19651 AAGAAGAAGAAGAAGTTTTTTTGATAACAGAGATTGG--A
1 AAGAAGAAGAAGAAG-TTTTTTGATAACAGAGATTGGAAA
19689 AA-AAGAAGAAGAAGTTTTTTGATAACAGAGATTGGAAA
1 AAGAAGAAGAAGAAGTTTTTTGATAACAGAGATTGGAAA
19727 AAGAAGAAGAAGAAGAATAAGATTTTTGATAACAGAGATTGGAAA
1 AAGAAGAAGAAGAAG--T----TTTTTGATAACAGAGATTGGAAA
*
19772 AAGAAGAAGAAGAAGTTTTTTGATAACAGAGATTGAAAA
1 AAGAAGAAGAAGAAGTTTTTTGATAACAGAGATTGGAAA
19811 AAG
1 AAG
19814 GACCTTGCAT
Statistics
Matches: 115, Mismatches: 1, Indels: 17
0.86 0.01 0.13
Matches are distributed among these distances:
36 21 0.18
37 12 0.10
38 5 0.04
39 37 0.32
41 1 0.01
43 1 0.01
45 38 0.33
ACGTcount: A:0.50, C:0.02, G:0.25, T:0.23
Consensus pattern (39 bp):
AAGAAGAAGAAGAAGTTTTTTGATAACAGAGATTGGAAA
Found at i:20727 original size:31 final size:30
Alignment explanation
Indices: 20661--20749 Score: 144
Period size: 31 Copynumber: 3.0 Consensus size: 30
20651 TGGAGTGATA
*
20661 ATTTTGTTACAAATCGATAATATTAGT-AC
1 ATTTTGTTACAAATCGATAACATTAGTGAC
*
20690 ATTTTGTTACAAATCGATAACATTAGTGGTC
1 ATTTTGTTACAAATCGATAACATTAGT-GAC
20721 ATTTTGTTACAAATCGATAACATTAGTGA
1 ATTTTGTTACAAATCGATAACATTAGTGA
20750 TCAATTTATT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
29 26 0.47
30 1 0.02
31 28 0.51
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.39
Consensus pattern (30 bp):
ATTTTGTTACAAATCGATAACATTAGTGAC
Found at i:26074 original size:21 final size:21
Alignment explanation
Indices: 26027--26091 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
26017 AAAACAATCA
* * *
26027 AGAGTCAAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
26049 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
26069 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
26090 AG
1 AG
26092 GCATAAGGGG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
20 1 0.03
21 33 0.94
22 1 0.03
ACGTcount: A:0.42, C:0.15, G:0.28, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:26167 original size:33 final size:33
Alignment explanation
Indices: 26125--26190 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
26115 AAATAGATGG
*
26125 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
26158 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
26191 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:28004 original size:19 final size:19
Alignment explanation
Indices: 27980--28028 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
27970 AATGTAGGGT
27980 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
27999 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
28018 TATTTTTGTAT
1 TAATTTTGTAT
28029 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:28489 original size:199 final size:199
Alignment explanation
Indices: 28147--29710 Score: 2935
Period size: 199 Copynumber: 7.9 Consensus size: 199
28137 TAATATGGCC
* *
28147 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
* *
28212 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
*
28277 AGAATATGTCTAAATAATGTGTCGACACTAATCTAGTTTGTGTCGATATTTTTTTTCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
28342 ATGGAA
194 ATGGAA
28348 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
28413 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
28478 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
28543 GGAA
196 GGAA
*
28547 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAATGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
28612 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
28677 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
28741 GGAA
196 GGAA
*
28745 AACAGAGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA-C
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
28809 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
28874 AATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATA--TTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
*
28936 GAAA
196 GGAA
28940 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
29005 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
29070 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
29135 GGAA
196 GGAA
29139 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
29204 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACC-GTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
29268 AATATGTCTAAATAATGTGTCGACACTATTATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
29333 GGAA
196 GGAA
*
29337 AACAGGGTGCACCCTTAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
29401 CAAAAATATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGATTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
29466 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
29531 GGAA
196 GGAA
*
29535 AACAGGGTGCACCCATAAACTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
29600 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
29665 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
29711 CTAATTTAAA
Statistics
Matches: 1335, Mismatches: 22, Indels: 14
0.97 0.02 0.01
Matches are distributed among these distances:
195 82 0.06
196 111 0.08
197 190 0.14
198 309 0.23
199 584 0.44
200 24 0.02
201 35 0.03
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
GGAA
Found at i:29338 original size:592 final size:594
Alignment explanation
Indices: 28147--29710 Score: 2920
Period size: 592 Copynumber: 2.6 Consensus size: 594
28137 TAATATGGCC
* *
28147 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG--A
*
28212 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAG
63 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
*
28277 AGAATATGTCTAAATAATGTGTCGACACTAATCTAGTTTGTGTCGATATTTTTTTTCCAGAATGA
128 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGA
28342 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
192 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
28407 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
257 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
28472 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGA
322 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGA
28537 ATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAATGTCGATCCCAAAA
387 ATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAATGTCGATCCCAAAA
28602 TCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGT
452 TCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGT
28667 TTTATGAGAGAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCC
517 TTTATGAGAGAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCC
28732 AGAATGAATGGAA
582 AGAATGAATGGAA
*
28745 AACAGAGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
28810 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGA
66 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGA
*
28875 ATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCAGAATGAATGA
131 ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATGG
28938 AAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA
196 AAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA
29003 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
29068 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
326 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
*
29133 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
391 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAATGTCGATCCCAAAATCAT
29198 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACC-GTTTTA
456 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
* *
29262 TGAGAGAATATGTCTAAATAATGTGTCGACACTATTATAGTTTGTGTCGATATTTTTTTTCCAGA
521 TGAGAGAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGA
29327 ATGAATGGAA
585 ATGAATGGAA
*
29337 AACAGGGTGCACCCTTAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA-C
* *
29401 CAAAAATATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGATTTTATGAGAG
65 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
29466 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
130 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAT
*
29531 GGAAAACAGGGTGCACCCATAAACTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
194 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
29596 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
259 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
29661 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
324 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
29711 CTAATTTAAA
Statistics
Matches: 946, Mismatches: 15, Indels: 13
0.97 0.02 0.01
Matches are distributed among these distances:
591 83 0.09
592 463 0.49
593 36 0.04
594 35 0.04
595 271 0.29
597 24 0.03
598 34 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (594 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGA
ATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATGG
AAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA
CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAATGTCGATCCCAAAATCAT
CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
TGAGAGAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAA
TGAATGGAA
Found at i:29482 original size:396 final size:398
Alignment explanation
Indices: 28147--29710 Score: 2935
Period size: 396 Copynumber: 3.9 Consensus size: 398
28137 TAATATGGCC
* *
28147 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
* *
28212 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
*
28277 AGAATATGTCTAAATAATGTGTCGACACTAATCTAGTTTGTGTCGATATTTTTTTTCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGA
28342 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
194 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
28407 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
259 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTA
28472 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGA
324 TGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGA
28537 ATGAATGGAA
389 ATGAATGGAA
*
28547 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAATGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
28612 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
28677 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
*
28741 GGAAAACAGAGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
196 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
28806 AA-CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
28870 AGAGAATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATA--TTTTTTCCAGAAT
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAAT
*
28932 GAATGAAA
391 GAATGGAA
28940 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
29005 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
29070 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
29135 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
196 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
29200 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACC-GTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
*
29264 AGAGAATATGTCTAAATAATGTGTCGACACTATTATAGTTTGTGTCGATATTTTTTTTCCAGAAT
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAAT
29329 GAATGGAA
391 GAATGGAA
*
29337 AACAGGGTGCACCCTTAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
29401 CAAAAATATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGATTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
29466 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
*
29531 GGAAAACAGGGTGCACCCATAAACTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
196 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
29596 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
29661 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
29711 CTAATTTAAA
Statistics
Matches: 1139, Mismatches: 19, Indels: 15
0.97 0.02 0.01
Matches are distributed among these distances:
393 194 0.17
394 105 0.09
395 124 0.11
396 352 0.31
397 195 0.17
398 111 0.10
399 23 0.02
400 35 0.03
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (398 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAAT
GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAAT
GAATGGAA
Found at i:31192 original size:18 final size:18
Alignment explanation
Indices: 31171--31232 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
31161 AGCGGTCGCA
31171 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* * *
31189 GAAGATGACGATGATGAT
1 GAAGATGAAGCTGACGAT
* *
31207 GACGATGAAGCTGGCGAT
1 GAAGATGAAGCTGACGAT
31225 GAAGATGA
1 GAAGATGA
31233 TGACGATGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.35, T:0.18
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:31195 original size:6 final size:6
Alignment explanation
Indices: 31171--31262 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
31161 AGCGGTCGCA
* * * * * *
31171 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * * * * *
31219 GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
31263 TGATCCAAAC
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:31206 original size:3 final size:3
Alignment explanation
Indices: 31186--31266 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
31176 TGAAGCTGAC
* * * * * ** *
31186 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
31234 GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
31267 CCAAACAAGT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:31225 original size:36 final size:36
Alignment explanation
Indices: 31174--31250 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
31164 GGTCGCAGAA
*
31174 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
31210 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
31246 GATGA
1 GATGA
31251 TGATGAAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:31266 original size:12 final size:12
Alignment explanation
Indices: 31174--31262 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
31164 GGTCGCAGAA
*
31174 GATGAAGCTGAC
1 GATGAAGATGAC
31186 GATGAAGATGAC
1 GATGAAGATGAC
*
31198 GATGATGATGAC
1 GATGAAGATGAC
* *
31210 GATGAAGCTGGC
1 GATGAAGATGAC
*
31222 GATGAAGATGAT
1 GATGAAGATGAC
* * *
31234 GACGATGATGAT
1 GATGAAGATGAC
* *
31246 GATGATGATGAA
1 GATGAAGATGAC
31258 GATGA
1 GATGA
31263 TGATCCAAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:31266 original size:18 final size:18
Alignment explanation
Indices: 31171--31262 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
31161 AGCGGTCGCA
*
31171 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGACGAT
* *
31189 GAAGATGACGATGATGAT
1 GAAGATGAAGATGACGAT
* * *
31207 GACGATGAAGCTGGCGAT
1 GAAGATGAAGATGACGAT
* * *
31225 GAAGATGATGACGATGAT
1 GAAGATGAAGATGACGAT
* * *
31243 GATGATGATGATGAAGAT
1 GAAGATGAAGATGACGAT
31261 GA
1 GA
31263 TGATCCAAAC
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGACGAT
Found at i:32685 original size:22 final size:22
Alignment explanation
Indices: 32641--32685 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
32631 ATTACATATC
*
32641 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGAACCTT
*
32663 TTTATAAAAAGTAT-GAACACTT
1 TTTAAAAAAAGTATCGAAC-CTT
32685 T
1 T
32686 CAACATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGAACCTT
Found at i:33005 original size:183 final size:183
Alignment explanation
Indices: 32717--33217 Score: 921
Period size: 183 Copynumber: 2.7 Consensus size: 183
32707 GTAAATTTAC
*
32717 AATATAACCGGTATAAATATACCGGTTTTATGCACGAATAGGTCTACAACCTATATCGACACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTT
* *
32782 TTAATATTGTGTCGGTACTTTATGTCCATATTGAAAGAAAAATGTATCGATACAATTTAAAAAAG
66 TTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACAATTTAAAAAAG
32847 TGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
131 TGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
*
32900 AATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGATACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTT
* *
32965 TTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATATGTCGATACGATTTAAAAAAG
66 TTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACAATTTAAAAAAG
33030 TGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
131 TGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
33083 AATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTT
1 AATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTT
* * *
33148 ATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAG
66 TTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACAATTTAAAAAAG
33213 TGTCG
131 TGTCG
33218 GTAATTTTAA
Statistics
Matches: 307, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 307 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34
Consensus pattern (183 bp):
AATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTT
TTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACAATTTAAAAAAG
TGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGT
Found at i:35721 original size:25 final size:25
Alignment explanation
Indices: 35687--35751 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
35677 TTATCATTAA
35687 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
35712 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
35737 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
35752 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:36164 original size:23 final size:23
Alignment explanation
Indices: 36115--36166 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
36105 ATAGTAGCCC
*
36115 TTATATAATGTAATAGGTATCGT
1 TTATATAATGTAATAGGTATCGG
36138 TTATATAATGTAATAGGTAGT-GG
1 TTATATAATGTAATAGGTA-TCGG
36161 TTATAT
1 TTATAT
36167 TGTAAAGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (23 bp):
TTATATAATGTAATAGGTATCGG
Found at i:36468 original size:25 final size:25
Alignment explanation
Indices: 36434--36484 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
36424 ACAACAAATC
*
36434 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
36459 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
36484 A
1 A
36485 TTTGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:36894 original size:18 final size:18
Alignment explanation
Indices: 36873--36909 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
36863 GTAATTGGAG
36873 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
36891 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
36909 T
1 T
36910 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:36917 original size:24 final size:24
Alignment explanation
Indices: 36865--36911 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
36855 TTTCATATGT
* *
36865 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
36889 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
36912 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:37211 original size:39 final size:39
Alignment explanation
Indices: 37168--37254 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
37158 TCCGATGCTC
* *
37168 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCAAAAGCTCATATGATGCCAAGCAAAAGGAA
*
37207 ATCAAAATCAAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCAAAAGCTCATATGATGCCAAGCAAAAGGAA
37246 ATCAAAATC
1 ATCAAAATC
37255 TACAACTTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCAAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:37686 original size:23 final size:23
Alignment explanation
Indices: 37655--37727 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
37645 ATAGGTAAAC
*
37655 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
37678 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
37701 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
37724 ATAT
1 ATAT
37728 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:38369 original size:329 final size:329
Alignment explanation
Indices: 37772--38432 Score: 1234
Period size: 329 Copynumber: 2.0 Consensus size: 329
37762 TACTTTTTTC
37772 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
1 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
*
37837 TAGGCGTCTAATGATTTATTTTTTTCGTTACGATATATATTATTATTAATTAAAAATTCTAAATA
66 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAATTAAAAATTCTAAATA
*
37902 TTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATAT
131 ATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATAT
37967 TGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAA
196 TGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAA
*
38032 GTATCGATCCTTTTTATAAAAAGTATGGACACTTTC-AATATAATGTAATAGGTAAATTTGCAAT
261 ATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAATATAATGTAATAGGTAAATTTGCAAT
38096 GCTT
326 GCTT
38100 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
1 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
*
38165 TAGGCGTCTAATGATTTATTTTTTACGTTATGATATATATTATTATTAAATTAAAAATTCTAAAT
66 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATT-AATTAAAAATTCTAAAT
38230 AATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
130 AATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATA
38295 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGA
195 TTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGA
38360 AATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATAATGTAATAGGTAAATTT
260 AATATCGATCCTTTTTATAAAAAGTATGGACACTTTC---A-AATATAATGTAATAGGTAAATTT
38425 GCAATGCT
321 GCAATGCT
38433 ATCGGTATAA
Statistics
Matches: 323, Mismatches: 4, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
328 110 0.34
329 182 0.56
334 31 0.10
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (329 bp):
ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAATTAAAAATTCTAAATA
ATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAATAT
TGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAGAA
ATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAATATAATGTAATAGGTAAATTTGCAAT
GCTT
Found at i:39861 original size:12 final size:13
Alignment explanation
Indices: 39844--39872 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
39834 TTAATTACGA
39844 AAAATTAAAA-TT
1 AAAATTAAAATTT
39856 AAAATTAAAATTT
1 AAAATTAAAATTT
39869 AAAA
1 AAAA
39873 ACTCGATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTAAAATTT
Found at i:39992 original size:14 final size:15
Alignment explanation
Indices: 39962--39996 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
39952 AGAAATATTG
*
39962 AATAAAAATTAATTA
1 AATAAAAATTAAATA
39977 AATAAAAA-TAAATA
1 AATAAAAATTAAATA
39991 AATAAA
1 AATAAA
39997 TCAGATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAAAAATTAAATA
Found at i:40215 original size:21 final size:21
Alignment explanation
Indices: 40189--40246 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
40179 TGTAAATGCA
*
40189 TTGCGATTTTACGAATTCGCG
1 TTGCGATTTTACAAATTCGCG
*
40210 TTGCGATTTTCCAAATTCGC-
1 TTGCGATTTTACAAATTCGCG
40230 --GCGATTTT-CAAATTCGC
1 TTGCGATTTTACAAATTCGC
40247 AACGCAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.26
18 8 0.23
21 18 0.51
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (21 bp):
TTGCGATTTTACAAATTCGCG
Found at i:40243 original size:17 final size:18
Alignment explanation
Indices: 40212--40246 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
40202 AATTCGCGTT
40212 GCGATTTTCCAAATTCGC
1 GCGATTTTCCAAATTCGC
40230 GCGATTTT-CAAATTCGC
1 GCGATTTTCCAAATTCGC
40247 AACGCAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (18 bp):
GCGATTTTCCAAATTCGC
Found at i:40316 original size:19 final size:20
Alignment explanation
Indices: 40243--40328 Score: 138
Period size: 20 Copynumber: 4.3 Consensus size: 20
40233 ATTTTCAAAT
*
40243 TCGCAACGCAAATATGTAAA
1 TCGCAACGCAAATCTGTAAA
* *
40263 TCACAACGCGAATCTGTAAA
1 TCGCAACGCAAATCTGTAAA
40283 TCGCAACGCAAATCTGTAAA
1 TCGCAACGCAAATCTGTAAA
40303 TCGCAACG-AAATCTGTAAA
1 TCGCAACGCAAATCTGTAAA
40322 TCGCAAC
1 TCGCAAC
40329 ACAGAAGTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
19 18 0.30
20 43 0.70
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (20 bp):
TCGCAACGCAAATCTGTAAA
Found at i:40404 original size:21 final size:21
Alignment explanation
Indices: 40378--40450 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 21
40368 TGCGATTTAC
*
40378 AAATTCGCAACATTGAATTTT
1 AAATTCGCAACATCGAATTTT
* *
40399 AAATTCACAAC-TCGATTTTT
1 AAATTCGCAACATCGAATTTT
*
40419 GAATTCGCAACA-CGAATTTT
1 AAATTCGCAACATCGAATTTT
*
40439 AATTTCGCAACA
1 AAATTCGCAACA
40451 GGTTTTATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
20 33 0.77
21 10 0.23
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (21 bp):
AAATTCGCAACATCGAATTTT
Found at i:40415 original size:41 final size:40
Alignment explanation
Indices: 40370--40449 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 40
40360 ATTCGCGTTG
*
40370 CGATTTACAAATTCGCAACATTGAATTTTAAATTCACAACT
1 CGATTTACAAATTCGCAACA-CGAATTTTAAATTCACAACT
*** * *
40411 CGATTTTTGAATTCGCAACACGAATTTTAATTTCGCAAC
1 CGATTTACAAATTCGCAACACGAATTTTAAATTCACAAC
40450 AGGTTTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
40 16 0.48
41 17 0.52
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (40 bp):
CGATTTACAAATTCGCAACACGAATTTTAAATTCACAACT
Found at i:44010 original size:20 final size:20
Alignment explanation
Indices: 43987--44061 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
43977 ATCGCAATGT
43987 GAATTTGACTTTCGCGTTGC
1 GAATTTGACTTTCGCGTTGC
***
44007 GAATTTGACTTTCGCAACGC
1 GAATTTGACTTTCGCGTTGC
* * * *
44027 GATTTTTACTTTCGTGTTAC
1 GAATTTGACTTTCGCGTTGC
*
44047 GAATTTGACTATCGC
1 GAATTTGACTTTCGC
44062 AACAATCGAA
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (20 bp):
GAATTTGACTTTCGCGTTGC
Found at i:44221 original size:25 final size:25
Alignment explanation
Indices: 44183--44231 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
44173 AAATCAATTA
*
44183 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
44208 AACATTGTTATGGGTACATTATTT
1 AACATTGTTATGGGTACATTATTT
44232 AGAAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:44633 original size:30 final size:30
Alignment explanation
Indices: 44598--44655 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
44588 TTTCAAATTT
44598 ATTTCATATGT-AATTGGAGTTTGAATTTAA
1 ATTTCA-ATGTGAATTGGAGTTTGAATTTAA
* * *
44628 ATTTCAATTTGAGTTTGAGTTTGAATTT
1 ATTTCAATGTGAATTGGAGTTTGAATTT
44656 CAATATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.50
Consensus pattern (30 bp):
ATTTCAATGTGAATTGGAGTTTGAATTTAA
Found at i:44636 original size:24 final size:24
Alignment explanation
Indices: 44609--44659 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
44599 TTTCATATGT
44609 AATTGGAGTTTGAATTTAAATTTC
1 AATTGGAGTTTGAATTTAAATTTC
* * *
44633 AATTTGAGTTTGAGTTTGAATTTC
1 AATTGGAGTTTGAATTTAAATTTC
44657 AAT
1 AAT
44660 ATAAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (24 bp):
AATTGGAGTTTGAATTTAAATTTC
Found at i:46065 original size:20 final size:20
Alignment explanation
Indices: 46019--46065 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
46009 TGTTGTGATT
46019 GTTGCGAAAGTCAAATTCGC
1 GTTGCGAAAGTCAAATTCGC
***
46039 AACGCGAAAGTCAAATTCGC
1 GTTGCGAAAGTCAAATTCGC
46059 GTTGCGA
1 GTTGCGA
46066 TTGTTGCGGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (20 bp):
GTTGCGAAAGTCAAATTCGC
Found at i:46140 original size:20 final size:20
Alignment explanation
Indices: 46117--46182 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
46107 AAAATCGCAA
46117 CGCGAATTTGACTTTCGCGT
1 CGCGAATTTGACTTTCGCGT
* **
46137 CGCGAATTTGACTATCGCAA
1 CGCGAATTTGACTTTCGCGT
*
46157 CGCGAATTTGAATTTCGCGT
1 CGCGAATTTGACTTTCGCGT
*
46177 TGCGAA
1 CGCGAA
46183 AGTGTACCTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (20 bp):
CGCGAATTTGACTTTCGCGT
Found at i:46342 original size:64 final size:64
Alignment explanation
Indices: 46241--46391 Score: 232
Period size: 64 Copynumber: 2.4 Consensus size: 64
46231 AATTTAAAAC
46241 AACAAATCAACTTTTACAAATCAATTAAACAAACAAAAAATAAAAATTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAACAAAAAATAAAAATTATTTACACATCAATTA
* * *** * *
46305 AACAAATTAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAACAAAAAATAAAAATTATTTACACATCAATTA
46369 AACAAATCAAC-TTTACAAATCAA
1 AACAAATCAACTTTTACAAATCAA
46392 CTTTTACAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
63 12 0.15
64 67 0.85
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.28
Consensus pattern (64 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAACAAAAAATAAAAATTATTTACACATCAATTA
Found at i:46386 original size:13 final size:14
Alignment explanation
Indices: 46370--46402 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
46360 CATCAATTAA
46370 ACAAATCAAC-TTT
1 ACAAATCAACTTTT
46383 ACAAATCAACTTTT
1 ACAAATCAACTTTT
46397 ACAAAT
1 ACAAAT
46403 ACATCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:47796 original size:21 final size:21
Alignment explanation
Indices: 47772--47870 Score: 119
Period size: 21 Copynumber: 4.7 Consensus size: 21
47762 GTTGGAGGGA
*
47772 CCTCTTGAACGATGAAAGAGG
1 CCTCTTGAACGATGAGAGAGG
* * *
47793 CCTCTTGAACGGTGGGAGGGG
1 CCTCTTGAACGATGAGAGAGG
* * *
47814 CCTCTTGAAGGATGATAGGGG
1 CCTCTTGAACGATGAGAGAGG
47835 CCTCTTGAACGAT-AGGAGAGG
1 CCTCTTGAACGATGA-GAGAGG
47856 CCTCTTGAACGATGA
1 CCTCTTGAACGATGA
47871 CAGGTGCTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
20 1 0.02
21 63 0.97
22 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.21
Consensus pattern (21 bp):
CCTCTTGAACGATGAGAGAGG
Found at i:47828 original size:42 final size:42
Alignment explanation
Indices: 47765--47870 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
47755 TCGAATGGTT
* * *
47765 GGAGGGACCTCTTGAACGATGAAAGAGGCCTCTTGAACGGTG
1 GGAGGGGCCTCTTGAACGATGAAAGAGGCCTCTTGAACGATA
* * *
47807 GGAGGGGCCTCTTGAAGGATGATAGGGGCCTCTTGAACGATA
1 GGAGGGGCCTCTTGAACGATGAAAGAGGCCTCTTGAACGATA
*
47849 GGAGAGGCCTCTTGAACGATGA
1 GGAGGGGCCTCTTGAACGATGA
47871 CAGGTGCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.25, C:0.18, G:0.37, T:0.20
Consensus pattern (42 bp):
GGAGGGGCCTCTTGAACGATGAAAGAGGCCTCTTGAACGATA
Found at i:48219 original size:21 final size:21
Alignment explanation
Indices: 48170--48219 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
48160 AGCGGCTACC
*
48170 TCATCACGTAAAGTAGATACC
1 TCATCACGTAAAGTAGATACA
*
48191 TCACCACGTAAAG-ACCG-TACA
1 TCATCACGTAAAGTA--GATACA
48212 TCATCACG
1 TCATCACG
48220 CAATGCACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.04
21 22 0.92
22 1 0.04
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.20
Consensus pattern (21 bp):
TCATCACGTAAAGTAGATACA
Found at i:48260 original size:21 final size:21
Alignment explanation
Indices: 48236--48285 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
48226 ACCATTGTCT
* *
48236 TCACGTAAAGTACTGACCTCC
1 TCACGTAAAGCACTGACCTCA
* *
48257 TCACGCAAAGCATTGACCTCA
1 TCACGTAAAGCACTGACCTCA
48278 TCACGTAA
1 TCACGTAA
48286 CTCCTCTAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (21 bp):
TCACGTAAAGCACTGACCTCA
Found at i:49985 original size:20 final size:20
Alignment explanation
Indices: 49962--50027 Score: 100
Period size: 19 Copynumber: 3.4 Consensus size: 20
49952 TCTGAAACTT
49962 AAAATCGCAACGCGAAAATG
1 AAAATCGCAACGCGAAAATG
*
49982 AAAATCGCAACGTG-AAATG
1 AAAATCGCAACGCGAAAATG
*
50001 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACGCGAAAATG
50020 AAAATCGC
1 AAAATCGC
50028 GTTGCGATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 26 0.62
20 16 0.38
ACGTcount: A:0.48, C:0.21, G:0.18, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGCGAAAATG
Found at i:50554 original size:19 final size:20
Alignment explanation
Indices: 50532--50569 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50522 AATATTGTGT
50532 TTCGAATT-CGAAAATAAAA
1 TTCGAATTGCGAAAATAAAA
**
50551 TTCGCGTTGCGAAAATAAA
1 TTCGAATTGCGAAAATAAA
50570 CGCGCTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (20 bp):
TTCGAATTGCGAAAATAAAA
Found at i:55000 original size:14 final size:14
Alignment explanation
Indices: 54963--55000 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
54953 TAAAATTTAA
*
54963 ACAAAATAAAGAAC
1 ACAAAATAATGAAC
54977 ACAAAATAATGAA-
1 ACAAAATAATGAAC
54990 ATCAAAATAAT
1 A-CAAAATAAT
55001 TGTAAAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.68, C:0.11, G:0.05, T:0.16
Consensus pattern (14 bp):
ACAAAATAATGAAC
Found at i:55241 original size:22 final size:23
Alignment explanation
Indices: 55216--55265 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
55206 GTATATAGTT
*
55216 TATATAATTTA-TAT-TAATAAAC
1 TATATAAGTTAGTATAT-ATAAAC
55238 TATAT-AGTTAGTATATATAAAC
1 TATATAAGTTAGTATATATAAAC
55260 TATATA
1 TATATA
55266 TTATATAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.17
22 19 0.79
23 1 0.04
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (23 bp):
TATATAAGTTAGTATATATAAAC
Found at i:55282 original size:33 final size:32
Alignment explanation
Indices: 55245--55468 Score: 248
Period size: 33 Copynumber: 7.0 Consensus size: 32
55235 AACTATATAG
55245 TTAGTATATATAAACTATATATTATATAGTATA
1 TTAGTATATATAAACTATATATTATATAGT-TA
*
55278 TTAGTATATATAAACTATATAGTATATAGTTTA
1 TTAGTATATATAAACTATATATTATATAG-TTA
* *
55311 TTAATATATATAAATTATATATTATATAG-T-
1 TTAGTATATATAAACTATATATTATATAGTTA
* * *
55341 TCA-T-TA-ATAAA-TATAAACTATATAGTTCA
1 TTAGTATATATAAACTATATATTATATAGTT-A
* *
55370 TTAGTAAATATAAACTATATATTAAATAGTTCA
1 TTAGTATATATAAACTATATATTATATAGTT-A
*
55403 TTAGTATATATAAAATATAT-TGTATATAGTTCA
1 TTAGTATATATAAACTATATAT-TATATAGTT-A
55436 TTAGTATATATAAACTATATATTAATATA-TTA
1 TTAGTATATATAAACTATATATT-ATATAGTTA
55468 T
1 T
55469 GTATAAATTA
Statistics
Matches: 164, Mismatches: 16, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
26 12 0.07
27 6 0.04
28 2 0.01
29 3 0.02
30 3 0.02
31 2 0.01
32 8 0.05
33 121 0.74
34 7 0.04
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.45
Consensus pattern (32 bp):
TTAGTATATATAAACTATATATTATATAGTTA
Found at i:55296 original size:26 final size:26
Alignment explanation
Indices: 55232--55390 Score: 96
Period size: 26 Copynumber: 6.5 Consensus size: 26
55222 ATTTATATTA
55232 ATAAACTATATAGTTAGTATATA-TAAACT
1 ATAAACTATATAG-TA-TAT-TAGTAAA-T
* * *
55261 ATATATTATATAGTATATTAGTATAT
1 ATAAACTATATAGTATATTAGTAAAT
*
55287 ATAAACTATATAGTATA-TAGT--TT
1 ATAAACTATATAGTATATTAGTAAAT
* *
55310 ATTAA-TATATA-TAAATTA-T--AT
1 ATAAACTATATAGTATATTAGTAAAT
*
55331 AT----TATATAGT-TCATTAATAAAT
1 ATAAACTATATAGTAT-ATTAGTAAAT
55353 ATAAACTATATAGT-TCATTAGTAAAT
1 ATAAACTATATAGTAT-ATTAGTAAAT
55379 ATAAACTATATA
1 ATAAACTATATA
55391 TTAAATAGTT
Statistics
Matches: 108, Mismatches: 11, Indels: 25
0.75 0.08 0.17
Matches are distributed among these distances:
18 6 0.06
19 5 0.05
20 1 0.01
21 7 0.06
22 12 0.11
23 5 0.05
25 4 0.04
26 49 0.45
27 6 0.06
28 2 0.02
29 11 0.10
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (26 bp):
ATAAACTATATAGTATATTAGTAAAT
Found at i:55322 original size:17 final size:17
Alignment explanation
Indices: 55300--55355 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
55290 AACTATATAG
55300 TATATAGTTTATTAATA
1 TATATAGTTTATTAATA
**
55317 TATATAAATTA-T-ATA
1 TATATAGTTTATTAATA
*
55332 TTATATAGTTCATTAATA
1 -TATATAGTTTATTAATA
*
55350 AATATA
1 TATATA
55356 AACTATATAG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 3 0.10
16 9 0.30
17 15 0.50
18 3 0.10
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (17 bp):
TATATAGTTTATTAATA
Found at i:55363 original size:59 final size:59
Alignment explanation
Indices: 55300--55464 Score: 177
Period size: 59 Copynumber: 2.7 Consensus size: 59
55290 AACTATATAG
* * *
55300 TATATAGTTTATTAATATATATAAATTATATATTATATAGTTCATTAATAAATATAAAC
1 TATATAGTTCATTAATATATATAAACTATATATTATATAGTTCATTAATAAATATAAAA
* * * * *
55359 TATATAGTTCATTAGTAAATATAAACTATATATTAAATAGTTCATTAGTATATATAAAATATA
1 TATATAGTTCATTAATATATATAAACTATATATTATATAGTTCATTA--ATAAATATAA-A-A
*
55422 TTGTATATAGTTCATTAGTATATATAAACTATATATTAATATA
1 ---TATATAGTTCATTAATATATATAAACTATATATT-ATATA
55465 TTATGTATAA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
59 42 0.48
61 8 0.09
62 1 0.01
66 33 0.38
67 4 0.05
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.44
Consensus pattern (59 bp):
TATATAGTTCATTAATATATATAAACTATATATTATATAGTTCATTAATAAATATAAAA
Found at i:55375 original size:92 final size:90
Alignment explanation
Indices: 55206--55482 Score: 276
Period size: 92 Copynumber: 3.0 Consensus size: 90
55196 TATGGTTTAT
* * * * *
55206 GTATATAGTTTATATAATTTATATTAATA-A-ACTATATAGTT-AGTATATATAAACTATATATT
1 GTATATAGTTTAT-TAATATATATAAATATATATTATATAGTTCA-T-TA-ATAAA-TATAAACT
55268 ATATAGTATATTAGTATATATAAACTATATA
61 ATATAGT-TATTAGTATATATAAACTATATA
55299 GTATATAGTTTATTAATATATATAAATTATATATTATATAGTTCATTAATAAATATAAACTATAT
1 GTATATAGTTTATTAATATATATAAA-TATATATTATATAGTTCATTAATAAATATAAACTATAT
*
55364 AGTTCATTAGTAAATATAAACTATATA
65 AGTT-ATTAGTATATATAAACTATATA
* * * * * *
55391 TTAAATAGTTCATTAGTATATATAAA-ATATATTGTATATAGTTCATTAGTATATATAAACTATA
1 GTATATAGTTTATTAATATATATAAATATATA-T-TATATAGTTCATTAATAAATATAAACTATA
* * *
55455 TA-TTAATATATTATGTATAAATTATATA
64 TAGTT-AT-TAGTATATATAAACTATATA
55483 ATTTATTATA
Statistics
Matches: 159, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
90 5 0.03
91 6 0.04
92 113 0.71
93 20 0.13
94 3 0.02
95 11 0.07
96 1 0.01
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (90 bp):
GTATATAGTTTATTAATATATATAAATATATATTATATAGTTCATTAATAAATATAAACTATATA
GTTATTAGTATATATAAACTATATA
Found at i:55482 original size:28 final size:29
Alignment explanation
Indices: 55440--55510 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
55430 AGTTCATTAG
*
55440 TATATATAAACTATAT-A-TTAATATA-T
1 TATATATAAATTATATAATTTAATATAGT
* *
55466 TATGTATAAATTATATAATTTATTATAGTT
1 TATATATAAATTATATAATTTAATATAG-T
55496 TATATATAAATTATA
1 TATATATAAATTATA
55511 CAGTTTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.38
27 1 0.03
28 7 0.19
30 15 0.41
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (29 bp):
TATATATAAATTATATAATTTAATATAGT
Found at i:55503 original size:21 final size:20
Alignment explanation
Indices: 55477--55520 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
55467 ATGTATAAAT
* *
55477 TATATAATTTATTATAGTTTA
1 TATATAAATTA-TACAGTTTA
55498 TATATAAATTATACAGTTTA
1 TATATAAATTATACAGTTTA
55518 TAT
1 TAT
55521 TTATATATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (20 bp):
TATATAAATTATACAGTTTA
Found at i:55506 original size:30 final size:26
Alignment explanation
Indices: 55440--55528 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
55430 AGTTCATTAG
*
55440 TATATATAAACTATATATTAATATAT
1 TATATATAAATTATATATTAATATAT
* *
55466 TATGTATAAATTATATAATTTATTATAGTT
1 TATATATAAATTATAT-A-TTAATATA--T
* *
55496 TATATATAAATTATACAGTTTATAT-T
1 TATATATAAATTATATA-TTAATATAT
55522 TATATAT
1 TATATAT
55529 TGTGTATAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
26 22 0.43
27 1 0.02
28 7 0.14
29 6 0.12
30 15 0.29
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (26 bp):
TATATATAAATTATATATTAATATAT
Found at i:55586 original size:2 final size:2
Alignment explanation
Indices: 55579--55610 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
55569 ATTAATAAAC
55579 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
55611 GGTTTAGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:55701 original size:27 final size:27
Alignment explanation
Indices: 55671--55726 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
55661 CTATATAAAT
* *
55671 TATATATTATAGTTGATATTTATATAC
1 TATATACTATAGTTGACATTTATATAC
55698 TATATACTATAGTTGACATTTATATAC
1 TATATACTATAGTTGACATTTATATAC
55725 TA
1 TA
55727 AATCATATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (27 bp):
TATATACTATAGTTGACATTTATATAC
Found at i:55750 original size:27 final size:27
Alignment explanation
Indices: 55678--55738 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
55668 AATTATATAT
*
55678 TATAGTTGATATTTATATACTATATAC
1 TATAGTTGATATTTATATACTAAATAC
*
55705 TATAGTTGACATTTATATACTAAAT-C
1 TATAGTTGATATTTATATACTAAATAC
55731 ATATAGTT
1 -TATAGTT
55739 TATACTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (27 bp):
TATAGTTGATATTTATATACTAAATAC
Found at i:55860 original size:9 final size:9
Alignment explanation
Indices: 55848--55915 Score: 52
Period size: 9 Copynumber: 7.6 Consensus size: 9
55838 TATATTGCAC
55848 ATATAAACT
1 ATATAAACT
*
55857 ATATATACT
1 ATATAAACT
55866 ATATATGAACT
1 ATATA--AACT
*
55877 ATATATAA-A
1 ATATA-AACT
*
55886 ATATATA-T
1 ATATAAACT
*
55894 ATATATA-T
1 ATATAAACT
55902 ATATAAACT
1 ATATAAACT
55911 ATATA
1 ATATA
55916 CTATAGTTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
8 15 0.31
9 24 0.49
10 2 0.04
11 8 0.16
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (9 bp):
ATATAAACT
Found at i:55861 original size:2 final size:2
Alignment explanation
Indices: 55856--55920 Score: 53
Period size: 2 Copynumber: 31.0 Consensus size: 2
55846 ACATATAAAC
*
55856 TA TA TA TA CTA TA TA TGA -A CTA TA TA TA -A AA TA TA TA TA TA
1 TA TA TA TA -TA TA TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA
*
55897 TA TA TA TA TA AA CTA TA TA CTA TA
1 TA TA TA TA TA TA -TA TA TA -TA TA
55921 GTTGAGCTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
1 2 0.04
2 44 0.83
3 7 0.13
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (2 bp):
TA
Found at i:55862 original size:11 final size:11
Alignment explanation
Indices: 55848--55915 Score: 79
Period size: 11 Copynumber: 6.3 Consensus size: 11
55838 TATATTGCAC
55848 ATATAAACTAT
1 ATATAAACTAT
55859 ATAT--ACTAT
1 ATATAAACTAT
*
55868 ATATGAACTAT
1 ATATAAACTAT
*
55879 ATATAAAATAT
1 ATATAAACTAT
55890 ATATATATA-TAT
1 ATATA-A-ACTAT
55902 ATATAAACTAT
1 ATATAAACTAT
55913 ATA
1 ATA
55916 CTATAGTTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
9 9 0.18
10 1 0.02
11 30 0.60
12 9 0.18
13 1 0.02
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (11 bp):
ATATAAACTAT
Found at i:55906 original size:23 final size:24
Alignment explanation
Indices: 55876--55920 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
55866 ATATATGAAC
55876 TATATATAAAATATATA-TATATA
1 TATATATAAAATATATACTATATA
*
55899 TATATATAAACTATATACTATA
1 TATATATAAAATATATACTATA
55921 GTTGAGCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
TATATATAAAATATATACTATATA
Found at i:56467 original size:4 final size:4
Alignment explanation
Indices: 56445--56477 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
56435 ATTTAGGATT
56445 TTTA TTT- TTTA TATTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA T
56478 GCATATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:56713 original size:15 final size:15
Alignment explanation
Indices: 56690--56733 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
56680 TTAATATCCA
*
56690 ATATAATATGCAATT
1 ATATGATATGCAATT
* *
56705 ATATGATATGAAACT
1 ATATGATATGCAATT
56720 ATATGATATGCAAT
1 ATATGATATGCAAT
56734 GCAACTATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.36
Consensus pattern (15 bp):
ATATGATATGCAATT
Found at i:56854 original size:18 final size:18
Alignment explanation
Indices: 56841--56876 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
56831 TAATATACCA
56841 ACTATATACTATATACAT
1 ACTATATACTATATACAT
* *
56859 ACTATATATTATACACAT
1 ACTATATACTATATACAT
56877 GCCCACACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (18 bp):
ACTATATACTATATACAT
Found at i:57448 original size:21 final size:21
Alignment explanation
Indices: 57393--57467 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 21
57383 TAATATAAAA
57393 ATCATAATTAATATATTTAA-T
1 ATCATAATTAATA-ATTTAATT
*
57414 AT-AT--TTATTAATTTAATT
1 ATCATAATTAATAATTTAATT
57432 ATCATAATTAATAATTT-ATT
1 ATCATAATTAATAATTTAATT
* * *
57452 ATAATATTTAAAAATT
1 ATCATAATTAATAATT
57468 AATCATAGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
17 6 0.13
18 8 0.18
19 2 0.04
20 18 0.40
21 11 0.24
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (21 bp):
ATCATAATTAATAATTTAATT
Found at i:57455 original size:17 final size:17
Alignment explanation
Indices: 57396--57456 Score: 50
Period size: 21 Copynumber: 3.3 Consensus size: 17
57386 TATAAAAATC
*
57396 ATAATTAATATATTTAAT
1 ATAATTAATA-ATTTATT
* *
57414 ATATTTATTAATTTAATTAT
1 ATAATTAATAATTT-A-T-T
57434 CATAATTAATAATTTATT
1 -ATAATTAATAATTTATT
57452 ATAAT
1 ATAAT
57457 ATTTAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 9 0.26
18 10 0.29
19 1 0.03
20 2 0.06
21 12 0.35
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
ATAATTAATAATTTATT
Found at i:57579 original size:16 final size:16
Alignment explanation
Indices: 57560--57590 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57550 TATAAATGTC
*
57560 AAGTCAGTTAAATATA
1 AAGTCAGGTAAATATA
57576 AAGTCAGGTAAATAT
1 AAGTCAGGTAAATAT
57591 CAGATCATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.29
Consensus pattern (16 bp):
AAGTCAGGTAAATATA
Found at i:57645 original size:16 final size:16
Alignment explanation
Indices: 57626--57656 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
57616 TCATTTACAG
57626 GTCAGGTTGAAAACAA
1 GTCAGGTTGAAAACAA
57642 GTCAGGTTGAAAACA
1 GTCAGGTTGAAAACA
57657 TGTTAGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (16 bp):
GTCAGGTTGAAAACAA
Found at i:59495 original size:15 final size:15
Alignment explanation
Indices: 59475--59531 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
59465 AATAAGGTAT
59475 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
** *
59490 CGGGTACCCGCAAAATT
1 CGGGTACCCG-ATTA-C
*
59507 CAGGTACCCGATTAC
1 CGGGTACCCGATTAC
59522 CGGGTACCCG
1 CGGGTACCCG
59532 TAACATCCGG
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
15 19 0.59
16 4 0.12
17 9 0.28
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (15 bp):
CGGGTACCCGATTAC
Found at i:61036 original size:2 final size:2
Alignment explanation
Indices: 61029--61058 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
61019 GTTAGTATGT
61029 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
61059 ACATCATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:61416 original size:14 final size:15
Alignment explanation
Indices: 61397--61434 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
61387 GGAGCACGGG
*
61397 TTTTTCTTG-TAGTT
1 TTTTTCTTGCTAGTC
61411 TTTTTCTTGCTAGTC
1 TTTTTCTTGCTAGTC
*
61426 TTTTACTTG
1 TTTTTCTTG
61435 ATATAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.66
Consensus pattern (15 bp):
TTTTTCTTGCTAGTC
Found at i:65461 original size:12 final size:12
Alignment explanation
Indices: 65444--65469 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
65434 CCATTTTTTG
65444 TGTTGTTAAAGA
1 TGTTGTTAAAGA
65456 TGTTGTTAAAGA
1 TGTTGTTAAAGA
65468 TG
1 TG
65470 GTTCTCTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (12 bp):
TGTTGTTAAAGA
Found at i:66006 original size:15 final size:15
Alignment explanation
Indices: 65986--66015 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
65976 CACCCTAAAG
65986 ACAATGTTCAAACAA
1 ACAATGTTCAAACAA
66001 ACAATGTTCAAACAA
1 ACAATGTTCAAACAA
66016 GGACAGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (15 bp):
ACAATGTTCAAACAA
Found at i:71916 original size:2 final size:2
Alignment explanation
Indices: 71909--71943 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
71899 AAATAACTTA
71909 AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71944 TTTTAACTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:75187 original size:49 final size:49
Alignment explanation
Indices: 75025--75334 Score: 372
Period size: 49 Copynumber: 6.4 Consensus size: 49
75015 TTAATAAGTA
* * * *
75025 ACGTCAGA-ATGCTAAATCATCATTAATAGTAGTACCATCGTTACAAAG
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
* * *
75073 ACGTCAGAC-TGCTAAATCGTCCTTAATAGTAGTACCACCATCACAAAG
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
* * * * *** * *
75121 ACATTAGACTTGTTAAATCATCATTAATAGTAGCACCATTGTCATAAAA
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
* * *
75170 ACGTCAGACGTGCTAAATCATCATTAATAGTAGCACTATCATCACAAAG
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
* **
75219 ACGTCAGACATGCTAAATCATCATTAATAGTAGTACCACTGTCACAAAG
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
* * *
75268 ACGTCATAAATGCTACATCATCATTAATAGTAGCACCACCATCACAAAG
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
*
75317 ACGTCAGACGTGCTAAAT
1 ACGTCAGACATGCTAAAT
75335 GCTCACCTCT
Statistics
Matches: 219, Mismatches: 41, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
48 49 0.22
49 170 0.78
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (49 bp):
ACGTCAGACATGCTAAATCATCATTAATAGTAGCACCACCATCACAAAG
Found at i:75236 original size:98 final size:97
Alignment explanation
Indices: 75025--75334 Score: 424
Period size: 98 Copynumber: 3.2 Consensus size: 97
75015 TTAATAAGTA
* *
75025 ACGTCAGA-ATGCTAAATCATCATTAATAGTAGTACCATCGTTACAAAGACGTCAGACTGCTAAA
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGTACCATTGTCACAAAGACGTCAGACTGCTAAA
* * *
75089 TCGTCCTTAATAGTAGTACCACCATCACAAAG
66 TCATCATTAATAGTAGCACCACCATCACAAAG
* * * * * * *
75121 ACATTAGACTTGTTAAATCATCATTAATAGTAGCACCATTGTCATAAAAACGTCAGACGTGCTAA
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGTACCATTGTCACAAAGACGTCAGAC-TGCTAA
* *
75186 ATCATCATTAATAGTAGCACTATCATCACAAAG
65 ATCATCATTAATAGTAGCACCACCATCACAAAG
* * * *
75219 ACGTCAGACATGCTAAATCATCATTAATAGTAGTACCACTGTCACAAAGACGTCATAAATGCTAC
1 ACGTCAGACATGCTAAATCATCATTAATAGTAGTACCATTGTCACAAAGACGTCA-GACTGCTAA
75284 ATCATCATTAATAGTAGCACCACCATCACAAAG
65 ATCATCATTAATAGTAGCACCACCATCACAAAG
*
75317 ACGTCAGACGTGCTAAAT
1 ACGTCAGACATGCTAAAT
75335 GCTCACCTCT
Statistics
Matches: 183, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
96 6 0.03
97 42 0.23
98 134 0.73
99 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (97 bp):
ACGTCAGACATGCTAAATCATCATTAATAGTAGTACCATTGTCACAAAGACGTCAGACTGCTAAA
TCATCATTAATAGTAGCACCACCATCACAAAG
Found at i:75288 original size:147 final size:146
Alignment explanation
Indices: 75024--75334 Score: 417
Period size: 147 Copynumber: 2.1 Consensus size: 146
75014 GTTAATAAGT
* * * *
75024 AACGTCAGA-ATGCTAAATCATCATTAATAGTAGTACCATCGTTACAAAGACGTCAGACTGCTAA
1 AACGTCAGACGTGCTAAATCATCATTAATAGTAGCACCATCATCACAAAGACGTCAGACTGCTAA
* * * ** *
75088 ATCGTCCTTAATAGTAGTACCACCATCACAAAGACATTAGACTTGTTAAATCATCATTAATAGTA
66 ATCATCATTAATAGTAGTACCACCATCACAAAGACATCAGAAATGCTAAATCATCATTAATAGTA
*** *
75153 GCACCATTGTCATAAA
131 GCACCACCATCACAAA
*
75169 AACGTCAGACGTGCTAAATCATCATTAATAGTAGCACTATCATCACAAAGACGTCAGACATGCTA
1 AACGTCAGACGTGCTAAATCATCATTAATAGTAGCACCATCATCACAAAGACGTCAGAC-TGCTA
** * * *
75234 AATCATCATTAATAGTAGTACCACTGTCACAAAGACGTCATAAATGCTACATCATCATTAATAGT
65 AATCATCATTAATAGTAGTACCACCATCACAAAGACATCAGAAATGCTAAATCATCATTAATAGT
75299 AGCACCACCATCACAAA
130 AGCACCACCATCACAAA
*
75316 GACGTCAGACGTGCTAAAT
1 AACGTCAGACGTGCTAAAT
75335 GCTCACCTCT
Statistics
Matches: 143, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
145 9 0.06
146 44 0.31
147 90 0.63
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (146 bp):
AACGTCAGACGTGCTAAATCATCATTAATAGTAGCACCATCATCACAAAGACGTCAGACTGCTAA
ATCATCATTAATAGTAGTACCACCATCACAAAGACATCAGAAATGCTAAATCATCATTAATAGTA
GCACCACCATCACAAA
Found at i:99681 original size:10 final size:11
Alignment explanation
Indices: 99650--99681 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
99640 AAACACACAC
99650 ATATATATAT-
1 ATATATATATA
99660 ATATATATATA
1 ATATATATATA
99671 AT-TATATATA
1 ATATATATATA
99681 A
1 A
99682 AATGAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 19 0.90
11 2 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATATATATA
Found at i:100679 original size:2 final size:2
Alignment explanation
Indices: 100672--100705 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
100662 AAACGAATAC
100672 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100706 TTAATTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100734 original size:11 final size:10
Alignment explanation
Indices: 100681--100745 Score: 58
Period size: 10 Copynumber: 6.2 Consensus size: 10
100671 CATATATATA
* *
100681 TATATATATA
1 TATATTTATT
* *
100691 TATATATATA
1 TATATTTATT
100701 TATATTTAATTT
1 TATATTT-A-TT
100713 TATATTTATT
1 TATATTTATT
*
100723 TATGTTTAATT
1 TATATTT-ATT
100734 TATATTTATT
1 TATATTTATT
100744 TA
1 TA
100746 AAAATAAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
10 29 0.60
11 11 0.23
12 8 0.17
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
TATATTTATT
Found at i:100741 original size:6 final size:6
Alignment explanation
Indices: 100672--100742 Score: 51
Period size: 6 Copynumber: 12.3 Consensus size: 6
100662 AAACGAATAC
* * * * *
100672 ATATAT ATATAT ATATAT ATATAT ATATAT ATATTT A-ATTT -TATATT
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATATTT ATAT-TT
*
100719 -TATTT ATGTTT A-ATTT ATATTT AT
1 ATATTT ATATTT ATATTT ATATTT AT
100743 TTAAAAATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
5 12 0.21
6 46 0.79
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (6 bp):
ATATTT
Found at i:100920 original size:12 final size:12
Alignment explanation
Indices: 100903--100934 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
100893 AAAATAAAAT
100903 TAAATATATTAA
1 TAAATATATTAA
100915 TAAATA-ATTAA
1 TAAATATATTAA
100926 -AAATATATT
1 TAAATATATT
100935 TGTGAATGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.26
11 8 0.42
12 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAATATATTAA
Found at i:104428 original size:22 final size:22
Alignment explanation
Indices: 104386--104433 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
104376 AAAATATACC
*
104386 AAAATATAGAAAAAATGTATAAT
1 AAAATATAAAAAAAATGTAT-AT
104409 AAAAT-TAAAAAAAACT-TATAT
1 AAAATATAAAAAAAA-TGTATAT
104430 AAAA
1 AAAA
104434 AGCATAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 6 0.26
22 11 0.48
23 6 0.26
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAATATAAAAAAAATGTATAT
Found at i:104585 original size:2 final size:2
Alignment explanation
Indices: 104578--104613 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
104568 TATTTCTTCA
104578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104614 TTACACCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104811 original size:27 final size:26
Alignment explanation
Indices: 104766--104818 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
104756 TCCCTGTATT
104766 ATTTTTTTTAAAATAATGTGGCCCTC
1 ATTTTTTTTAAAATAATGTGGCCCTC
* *
104792 ATTTTTTTTGAAGTATATGTGGCCCTC
1 ATTTTTTTTAAAATA-ATGTGGCCCTC
104819 GAAATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.47
Consensus pattern (26 bp):
ATTTTTTTTAAAATAATGTGGCCCTC
Found at i:105404 original size:15 final size:15
Alignment explanation
Indices: 105384--105413 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
105374 CAAAGCCAAG
105384 TTTGTTCATCTTTGA
1 TTTGTTCATCTTTGA
105399 TTTGTTCATCTTTGA
1 TTTGTTCATCTTTGA
105414 CTATAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTGTTCATCTTTGA
Found at i:108034 original size:26 final size:26
Alignment explanation
Indices: 107989--108038 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
107979 CTGACGTGGT
*
107989 AGTTTCTAGAAGGTTCAGTCAGCGAC
1 AGTTTCTAGAAGATTCAGTCAGCGAC
108015 AGTTTCTAGAAGATAT-AGTCAGCG
1 AGTTTCTAGAAGAT-TCAGTCAGCG
108039 CGCCTTTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
AGTTTCTAGAAGATTCAGTCAGCGAC
Found at i:113509 original size:3 final size:3
Alignment explanation
Indices: 113503--113591 Score: 106
Period size: 3 Copynumber: 29.0 Consensus size: 3
113493 TTTACTCATT
* * * *
113503 TTA TTA TTA TTA TTA GTA TTA TTA TAA TTA TTA TTA TTA TAA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
113551 TTA TTA TTA TTA TTA TTA ATA TATA TTA TTTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA TTA TTA
113592 CAAACAGGCC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
3 68 0.92
4 6 0.08
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:114984 original size:13 final size:13
Alignment explanation
Indices: 114968--115008 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
114958 ATATAGTAAA
114968 TAAATATTTATTT
1 TAAATATTTATTT
*
114981 TAAATAAATTATTT
1 TAAAT-ATTTATTT
*
114995 TAAACATTTATTT
1 TAAATATTTATTT
115008 T
1 T
115009 TCAATATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:119015 original size:15 final size:15
Alignment explanation
Indices: 118995--119026 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
118985 ATCAATACCT
118995 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
119010 TTTTGCATACATTCA
1 TTTTGCATACATGCA
119025 TT
1 TT
119027 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:126337 original size:4 final size:4
Alignment explanation
Indices: 126328--126371 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
126318 TTGAAGAGAA
*
126328 AAAG AAAG AAAG AAAA AAAG AAAAG AAAAG AAA- AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG -AAAG -AAAG AAAG AAAG AAAG AAA
126372 AAGAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
3 3 0.08
4 24 0.67
5 9 0.25
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:126345 original size:16 final size:16
Alignment explanation
Indices: 126321--126382 Score: 72
Period size: 16 Copynumber: 3.7 Consensus size: 16
126311 ATTATGCTTG
*
126321 AAGAGAAAAAGAAAGA
1 AAGAAAAAAAGAAAGA
126337 AAGAAAAAAAGAAAAGA
1 AAGAAAAAAAG-AAAGA
126354 AA-AGAAAAAAGAAAGAAA
1 AAGA-AAAAAAGAAAG--A
126372 AAGAAAAAAAG
1 AAGAAAAAAAG
126383 GGGGTCAAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
16 15 0.38
17 14 0.35
18 10 0.25
19 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAAGAAAGA
Found at i:126352 original size:17 final size:17
Alignment explanation
Indices: 126321--126382 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
126311 ATTATGCTTG
*
126321 AAGAGAAAAAG-AAAGA
1 AAGAAAAAAAGAAAAGA
126337 AAGAAAAAAAGAAAAGA
1 AAGAAAAAAAGAAAAGA
*
126354 AA-AGAAAAAAGAAAGAAA
1 AAGA-AAAAAAGAAA-AGA
126372 AAGAAAAAAAG
1 AAGAAAAAAAG
126383 GGGGTCAAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
16 11 0.28
17 17 0.43
18 11 0.28
19 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAGAAAAGA
Found at i:126353 original size:21 final size:22
Alignment explanation
Indices: 126324--126382 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
126314 ATGCTTGAAG
126324 AGAAAAAGAAAGAAAGAAAAAA
1 AGAAAAAGAAAGAAAGAAAAAA
*
126346 AG-AAAAGAAAAGAAA-AAAGAA
1 AGAAAAAG-AAAGAAAGAAAAAA
*
126367 AGAAAAAGAAAAAAAG
1 AGAAAAAGAAAGAAAG
126383 GGGGTCAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AGAAAAAGAAAGAAAGAAAAAA
Found at i:127964 original size:94 final size:94
Alignment explanation
Indices: 127803--128113 Score: 500
Period size: 93 Copynumber: 3.3 Consensus size: 94
127793 CTGGTTTGGT
*
127803 AAAACCAATCATTGAATTTGAAAGATGAATGTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
1 AAAACCAATCATTAAATTTGAAAGATGAATGTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
127868 TATCTGATCTGGTTTGGTATGAACCCTAA
66 TATCTGATCTGGTTTGGTATGAACCCTAA
* *
127897 AAAACCAATCATTAAATTTGAAAGATGAATGTGTTAATAACATCTTCTGAAAGTGTTCTTTGAGT
1 AAAACCAATCATTAAATTTGAAAGATGAATGTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
*
127962 TATCTGATATGGTTTGGTATGAACCCT-A
66 TATCTGATCTGGTTTGGTATGAACCCTAA
127990 AAAACCAATCATTAAATTTGAAAGATGAATGTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
1 AAAACCAATCATTAAATTTGAAAGATGAATGTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
* * *
128055 TATCTGATCTGGTTTGATATGAAACC-AC
66 TATCTGATCTGGTTTGGTATGAACCCTAA
* * * *
128083 AGAACCAATCATGAGATATTGAAAAATGAAT
1 AAAACCAATCATTAAAT-TTGAAAGATGAAT
128114 TTGCTCATAG
Statistics
Matches: 201, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
93 101 0.50
94 100 0.50
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (94 bp):
AAAACCAATCATTAAATTTGAAAGATGAATGTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGT
TATCTGATCTGGTTTGGTATGAACCCTAA
Found at i:132668 original size:24 final size:23
Alignment explanation
Indices: 132625--132669 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
132615 GTTCATAATG
*
132625 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
132648 AGAAGAAGTTCATAATG-AGAAG
1 AGAAGAA-TTCAT-ATGAAGAAG
132670 AATTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 10 0.53
25 2 0.11
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:132668 original size:113 final size:113
Alignment explanation
Indices: 132465--133235 Score: 1149
Period size: 113 Copynumber: 6.8 Consensus size: 113
132455 GCAAAGATTT
* ** ***
132465 AAATCCATCA-TTCAATGGATCAACAGTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCACTT-GATGGATCAACTTTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAA
132529 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
65 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * * *
132578 AAATTCATCATTTGATGGATTAGCTTTTCCAGAAAGAGTTCATAATGAGAAGAATTCATCTGAAG
1 AAATCCATCACTTGATGGATCAACTTTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAAG
132643 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
***
132691 AAATCCATCACTTGATGGATCAACTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCACTTGATGGATCAACTTTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAAG
*
132756 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * *
132804 AAATTCATCATTTGATGGATTAACTTTTCCAGAAAGAGTTCATAATGAGAAGAATTCATCTGAAG
1 AAATCCATCACTTGATGGATCAACTTTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAAG
** *
132869 AAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGTTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * *
132917 AAATCCATCACTTGATGGATCAGCTTTTTCAG-AAGAAGTTCATAATAAGAAGAACTCATCTGAA
1 AAATCCATCACTTGATGGATCAACTTTTCCAGAAAG-AGTTCATAATGAGAAGAACTCATCTGAA
* *
132981 GTAGGAAGAAGAAGTTCATAATGAGAAGAGA-TTGTTCAACCTTTTTCTC
65 GAAGGAAGAAGAAGTTCATAATGAGAAGA-ATTTGTTCAACCTTTTGCTC
* * * * *
133030 AGATCCATCACTTGATGGATCAGCTTTTCCAGAGA-AGTTCATAATAAGAAGAATTCATCTGAAG
1 AAATCCATCACTTGATGGATCAACTTTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAAG
**
133094 AAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCTC
66 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
133142 AAATCCATCA-TTCGATGGATCAACTTTTCCAGAGAA-AGTTCATAATGAGAAGAACTCATCTGA
1 AAATCCATCACTT-GATGGATCAACTTTTCCAGA-AAGAGTTCATAATGAGAAGAACTCATCTGA
133205 AGAAGGAAGAAGAAGTTCATAATGAGAAGAA
64 AGAAGGAAGAAGAAGTTCATAATGAGAAGAA
133236 CTCATCTGAA
Statistics
Matches: 599, Mismatches: 52, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
111 2 0.00
112 103 0.17
113 491 0.82
114 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (113 bp):
AAATCCATCACTTGATGGATCAACTTTTCCAGAAAGAGTTCATAATGAGAAGAACTCATCTGAAG
AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:132894 original size:24 final size:23
Alignment explanation
Indices: 132851--132895 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
132841 GTTCATAATG
*
132851 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
132874 AGAAGAAGTTCATAATG-AGAAG
1 AGAAGAA-TTCAT-ATGAAGAAG
132896 AGCTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 10 0.53
25 2 0.11
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:133119 original size:24 final size:23
Alignment explanation
Indices: 133075--133120 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
133065 AGTTCATAAT
*
133075 AAGAAGAATTCATCTGAAGAAGG
1 AAGAAGAATTCATATGAAGAAGG
133098 AAGAAGAAGTTCATAATG-AGAAG
1 AAGAAGAA-TTCAT-ATGAAGAAG
133121 AGCTTGTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 10 0.50
25 2 0.10
ACGTcount: A:0.50, C:0.07, G:0.26, T:0.17
Consensus pattern (23 bp):
AAGAAGAATTCATATGAAGAAGG
Found at i:133257 original size:36 final size:36
Alignment explanation
Indices: 133177--133305 Score: 199
Period size: 36 Copynumber: 3.5 Consensus size: 36
133167 TTTCCAGAGA
133177 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCT---GAA-GAAGAAG
133217 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
133253 AAGTTCATAATGAGAAGAACTCATCTG-A-AAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
*
133287 AAATTCATAATGAGAAGAA
1 AAGTTCATAATGAGAAGAA
133306 TTTGTTCAAC
Statistics
Matches: 88, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
34 24 0.27
35 1 0.01
36 34 0.39
37 3 0.03
40 26 0.30
ACGTcount: A:0.49, C:0.10, G:0.22, T:0.19
Consensus pattern (36 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
Found at i:133370 original size:182 final size:186
Alignment explanation
Indices: 133062--133413 Score: 486
Period size: 182 Copynumber: 1.9 Consensus size: 186
133052 GCTTTTCCAG
* *
133062 AGAAGTTCATAATAAGAAGAATTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTG
1 AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
* * * * *
133127 TTCAACCTTTTGCTCAAATCCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGA
66 TTCAACCTTTTGCTCAAATCCATCATTCAATAGATCAACCTTTACAGAGAAAATTCATAATGAGA
*
133192 AGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGA
131 AGAACTCATCTGAA-AA--AAAAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGA
* *
133251 AGAAGTTCATAATGAGAAGAACTCATCTG-A-AA-GAAG-A-AA-TTCATAATGAGAAGAATTTG
1 AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
** *
133310 TTCAA-CTTTTGCTTGAATTCATCACTT-AATAGATCAACCTTTACAGAGAAAATTCATAATGAG
66 TTCAACCTTTTGCTCAAATCCATCA-TTCAATAGATCAACCTTTACAGAGAAAATTCATAATGAG
*
133373 AAGAATTCATCTGAAAAAAAAAGAAGTTCATAATGAGAAGA
130 AAGAACTCATCTGAAAAAAAAAGAAGTTCATAATGAGAAGA
133414 GCTTATTCAA
Statistics
Matches: 148, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
179 23 0.16
181 2 0.01
182 61 0.41
183 25 0.17
184 2 0.01
185 1 0.01
186 4 0.03
187 2 0.01
188 1 0.01
189 27 0.18
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.25
Consensus pattern (186 bp):
AGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
TTCAACCTTTTGCTCAAATCCATCATTCAATAGATCAACCTTTACAGAGAAAATTCATAATGAGA
AGAACTCATCTGAAAAAAAAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGA
Found at i:133656 original size:3 final size:3
Alignment explanation
Indices: 133650--133747 Score: 88
Period size: 3 Copynumber: 32.0 Consensus size: 3
133640 TTTACTCATT
* * * * * *
133650 TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TAA TTA TAA TAA TAA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
133698 TAA TAA TTA TTA TTA TTA TTA TTA TTA ATA TATA TTA TTTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA TTA TTA
133745 TTA
1 TTA
133748 CAAACAGGCC
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
3 77 0.93
4 6 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:135142 original size:13 final size:13
Alignment explanation
Indices: 135126--135166 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
135116 ATATAGTAAA
135126 TAAATATTTATTT
1 TAAATATTTATTT
*
135139 TAAATAAATTATTT
1 TAAAT-ATTTATTT
*
135153 TAAACATTTATTT
1 TAAATATTTATTT
135166 T
1 T
135167 TCAATATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:141085 original size:20 final size:21
Alignment explanation
Indices: 141038--141092 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
141028 TTGATTTTTC
* *
141038 TAAATATAAATAT-TTAAATT
1 TAAATATAAAAATATTAAAGT
141058 TAAAATATAAAAATATT-AAGT
1 T-AAATATAAAAATATTAAAGT
141079 TAAATATAAAAATA
1 TAAATATAAAAATA
141093 CGATTAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.45
21 15 0.48
22 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAATATAAAAATATTAAAGT
Found at i:141643 original size:29 final size:28
Alignment explanation
Indices: 141588--141660 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
141578 AATATTTGTA
* * *
141588 TTAAAAAAATCAA-ATAAGCCTTTGAAC
1 TTAAAAAAATCAATTTAAGCCCTCGAAC
141615 TTTTAAAAAAATCAATTTAA-CCCTCGAAC
1 --TTAAAAAAATCAATTTAAGCCCTCGAAC
141644 TTAAAAATAAT-AATTTA
1 TTAAAAA-AATCAATTTA
141661 GTCAATCTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
27 13 0.33
28 3 0.08
29 20 0.51
30 3 0.08
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.32
Consensus pattern (28 bp):
TTAAAAAAATCAATTTAAGCCCTCGAAC
Found at i:141963 original size:35 final size:36
Alignment explanation
Indices: 141902--141970 Score: 122
Period size: 35 Copynumber: 1.9 Consensus size: 36
141892 GATATCGTTA
*
141902 TGCCAAGATTTTATAAAATAATTTAACCAAATAATT
1 TGCCAAGATTTTATAAAATAAATTAACCAAATAATT
141938 TGCCAAGATTTTAT-AAATAAATTAACCAAATAA
1 TGCCAAGATTTTATAAAATAAATTAACCAAATAA
141971 AGAGAATGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.56
36 14 0.44
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.33
Consensus pattern (36 bp):
TGCCAAGATTTTATAAAATAAATTAACCAAATAATT
Found at i:142721 original size:16 final size:16
Alignment explanation
Indices: 142702--142806 Score: 67
Period size: 16 Copynumber: 6.4 Consensus size: 16
142692 ATAAATTTAG
142702 TAAAAAATAAAAATAA
1 TAAAAAATAAAAATAA
*
142718 TAAAAAACAAATAA-AA
1 TAAAAAATAAA-AATAA
142734 TAATAAAATAAACAAATAA
1 TAA-AAAAT-AA-AAATAA
* *
142753 -AAAAATTATGAAATAA
1 TAAAAAATA-AAAATAA
**
142769 TAAAGTA-AAAAAT-A
1 TAAAAAATAAAAATAA
142783 TAAAAAGA-AAAAATATA
1 TAAAAA-ATAAAAATA-A
142800 TAAAAAA
1 TAAAAAA
142807 GATGTTAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
14 5 0.07
15 11 0.16
16 24 0.35
17 20 0.29
18 6 0.09
19 3 0.04
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (16 bp):
TAAAAAATAAAAATAA
Found at i:142722 original size:8 final size:8
Alignment explanation
Indices: 142705--142787 Score: 57
Period size: 8 Copynumber: 10.5 Consensus size: 8
142695 AATTTAGTAA
*
142705 AAAATAAA
1 AAAATAAT
142713 AATAATAA-
1 AA-AATAAT
*
142721 AAAACAAAT
1 AAAA-TAAT
142730 AAAATAAT
1 AAAATAAT
142738 AAAATAA-
1 AAAATAAT
*
142745 ACAAATAAA
1 A-AAATAAT
*
142754 AAAATTAT
1 AAAATAAT
*
142762 GAAATAAT
1 AAAATAAT
*
142770 AAAGTAA-
1 AAAATAAT
142777 AAAAT-AT
1 AAAATAAT
142784 AAAA
1 AAAA
142788 AGAAAAAATA
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
6 1 0.02
7 11 0.18
8 38 0.63
9 10 0.17
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (8 bp):
AAAATAAT
Found at i:142757 original size:24 final size:23
Alignment explanation
Indices: 142703--142806 Score: 77
Period size: 24 Copynumber: 4.3 Consensus size: 23
142693 TAAATTTAGT
* *
142703 AAAAAATAAAAATAATAAAAAACA
1 AAAAAATAATAA-AATAAAAAATA
142727 AATAAAATAATAAAATAAACAAATA
1 AA-AAAATAATAAAATAAA-AAATA
* * *
142752 AAAAAATTATGAAATAATAAAGTA
1 AAAAAATAATAAAATAA-AAAATA
142776 AAAAATATAA-AAAGA-AAAAATATA
1 AAAAA-ATAATAAA-ATAAAAA-ATA
142800 TAAAAAA
1 -AAAAAA
142807 GATGTTAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
23 3 0.05
24 37 0.57
25 25 0.38
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (23 bp):
AAAAAATAATAAAATAAAAAATA
Found at i:142767 original size:32 final size:30
Alignment explanation
Indices: 142705--142804 Score: 94
Period size: 32 Copynumber: 3.1 Consensus size: 30
142695 AATTTAGTAA
142705 AAAATAAAAATAATAAAAAACAAATAAAATAAT
1 AAAAT-AAAA-AATAAAAAA-AAATAAAATAAT
* *
142738 AAAATAAACAAATAAAAAAATTATGAAATAAT
1 AAAATAAA-AAATAAAAAAA-AATAAAATAAT
* *
142770 AAAGTAAAAAATATAAAAAGAA-AAAATATAT
1 AAAATAAAAAATA-AAAAAAAATAAAATA-AT
142801 AAAA
1 AAAA
142805 AAGATGTTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
30 5 0.09
31 12 0.21
32 33 0.59
33 6 0.11
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (30 bp):
AAAATAAAAAATAAAAAAAAATAAAATAAT
Found at i:142793 original size:15 final size:16
Alignment explanation
Indices: 142765--142804 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 16
142755 AAATTATGAA
142765 ATAATAAAGTAAAAAAT
1 ATAA-AAAGTAAAAAAT
142782 ATAAAAAG-AAAAAAT
1 ATAAAAAGTAAAAAAT
142797 ATATAAAA
1 ATA-AAAA
142805 AAGATGTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.45
16 8 0.36
17 4 0.18
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (16 bp):
ATAAAAAGTAAAAAAT
Found at i:144753 original size:84 final size:84
Alignment explanation
Indices: 144600--144879 Score: 321
Period size: 84 Copynumber: 3.3 Consensus size: 84
144590 ATTGACTGAC
* * * *
144600 AGATAACCCTTCTCGCCTTGAGTTATACTGTAAATTGGATATGCCTTTGAGCTAAAT-TAAATCA
1 AGATAACCCTTCTCGCCTTGAGCTATGCTGCAAA-T-GATATGCCTTTGAGCTAAGTGT-AATCA
144664 AACTCGAAGGTCTTTTGTTGGA
63 AACTCGAAGGTCTTTTGTTGGA
* * * *
144686 AGATAGCCCTTGTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTTGAGCTAAGTGTAATCGAAC
1 AGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATATGCCTTTGAGCTAAGTGTAATCAAAC
* *
144751 TCGAAGGTCTTTAGTTGGC
66 TCGAAGGTCTTTTGTTGGA
* * * * * * *
144770 AGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATATTCCTTTGAGCTGAGCGTAGTCAAAC
1 AGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATATGCCTTTGAGCTAAGTGTAATCAAAC
*
144835 TCGAAGGTTTTTTGTTGGCA
66 TCGAAGGTCTTTTGTTGG-A
* * *
144855 A-ATAGCCCTTTTTGCCTTGAGCTAT
1 AGATAACCCTTCTCGCCTTGAGCTAT
144880 ATTGTAAATG
Statistics
Matches: 164, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
84 132 0.80
85 3 0.02
86 29 0.18
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (84 bp):
AGATAACCCTTCTCGCCTTGAGCTATGCTGCAAATGATATGCCTTTGAGCTAAGTGTAATCAAAC
TCGAAGGTCTTTTGTTGGA
Found at i:144850 original size:168 final size:169
Alignment explanation
Indices: 144561--144879 Score: 414
Period size: 168 Copynumber: 1.9 Consensus size: 169
144551 TTTGACACTC
*
144561 TTGAGCTGAATGAAATCGAACTCGAAGGTATTGACTGACAGATAACCCTTCTCGCCTTGAGTTAT
1 TTGAGCTGAATGAAATCGAACTCGAAGGTATTGACTGACAGATAACCCTTCTAGCCTTGAGTTAT
** *
144626 ACTGTAAATTGGATATGCCTTTGAGCTAAATTAAATCAAACTCGAAGGTCTTTTGTTGG-AAGAT
66 ACTACAAATTGGATATGCCTTTGAGCTAAAGTAAATCAAACTCGAAGGTCTTTTGTTGGCAA-AT
144690 AGCCCTTGTCGCCTTGAGCTATGCTGCAAATGATGTGCCT
130 AGCCCTTGTCGCCTTGAGCTATGCTGCAAATGATGTGCCT
* * * * *
144730 TTGAGCT-AAGTGTAATCGAACTCGAAGGTCTTTAGTTGGCAGATAACCCTTCTAGCCTTGAGTT
1 TTGAGCTGAA-TGAAATCGAACTCGAAGGTATTGA-CTGACAGATAACCCTTCTAGCCTTGAGTT
* * ** * *
144794 ATGCTACAAA-T-GATATTCCTTTGAGCTGAGCGT-AGTCAAACTCGAAGGTTTTTTGTTGGCAA
64 ATACTACAAATTGGATATGCCTTTGAGCT-AAAGTAAATCAAACTCGAAGGTCTTTTGTTGGCAA
* *
144856 ATAGCCCTTTTTGCCTTGAGCTAT
128 ATAGCCCTTGTCGCCTTGAGCTAT
144880 ATTGTAAATG
Statistics
Matches: 129, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
168 63 0.49
169 33 0.26
170 33 0.26
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (169 bp):
TTGAGCTGAATGAAATCGAACTCGAAGGTATTGACTGACAGATAACCCTTCTAGCCTTGAGTTAT
ACTACAAATTGGATATGCCTTTGAGCTAAAGTAAATCAAACTCGAAGGTCTTTTGTTGGCAAATA
GCCCTTGTCGCCTTGAGCTATGCTGCAAATGATGTGCCT
Done.