Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6287495
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 12 of 33
Found at i:2131238 original size:14 final size:15
Alignment explanation
Indices: 2131202--2131239 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
2131192 AGAAATCATT
2131202 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
2131217 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
2131232 AAAAATTA
1 AAAAATTA
2131240 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:2131399 original size:18 final size:19
Alignment explanation
Indices: 2131376--2131419 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
2131366 CAAAACATTT
2131376 GTGTTGCGAAACTAAA-AC
1 GTGTTGCGAAACTAAATAC
* *
2131394 GTGTTGCGAAATTAAATTC
1 GTGTTGCGAAACTAAATAC
2131413 GTGTTGC
1 GTGTTGC
2131420 AATTCGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (19 bp):
GTGTTGCGAAACTAAATAC
Found at i:2131461 original size:19 final size:19
Alignment explanation
Indices: 2131439--2131543 Score: 165
Period size: 19 Copynumber: 5.4 Consensus size: 19
2131429 ATCGAGTCGT
2131439 GAATTTGAAATTCAGTTGC
1 GAATTTGAAATTCAGTTGC
*
2131458 GAATTTGAAATTCAGTTAC
1 GAATTTGAAATTCAGTTGC
2131477 GAATTTGAAATTCAGTTGC
1 GAATTTGAAATTCAGTTGC
*
2131496 GAATTTGAAATTCAGTTGT
1 GAATTTGAAATTCAGTTGC
*
2131515 GAATTTGAAATTTAGTGTTGC
1 GAATTTGAAATTCA--GTTGC
2131536 GAATTTGA
1 GAATTTGA
2131544 CTTCTGTGTT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
19 67 0.85
21 12 0.15
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (19 bp):
GAATTTGAAATTCAGTTGC
Found at i:2131558 original size:20 final size:20
Alignment explanation
Indices: 2131529--2131657 Score: 165
Period size: 20 Copynumber: 6.5 Consensus size: 20
2131519 TTGAAATTTA
2131529 GTGTTGCGAATTTGACTTCT
1 GTGTTGCGAATTTGACTTCT
*
2131549 GTGTTACGAATTTGACTTCT
1 GTGTTGCGAATTTGACTTCT
2131569 GTGTTGCG-ATTT-ACATAT-T
1 GTGTTGCGAATTTGAC-T-TCT
* * *
2131588 CGCGTTGCGAATTTAACTTTT
1 -GTGTTGCGAATTTGACTTCT
*
2131609 GTGTTGCGAATTTGACTTCA
1 GTGTTGCGAATTTGACTTCT
2131629 GTGTTGCGAATTTGACTTCT
1 GTGTTGCGAATTTGACTTCT
2131649 GTGTTGCGA
1 GTGTTGCGA
2131658 TTTACATATT
Statistics
Matches: 95, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.02
19 6 0.06
20 79 0.83
21 6 0.06
22 2 0.02
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.43
Consensus pattern (20 bp):
GTGTTGCGAATTTGACTTCT
Found at i:2131675 original size:40 final size:40
Alignment explanation
Indices: 2131555--2131682 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
2131545 TTCTGTGTTA
2131555 CGAATTTGACTTCTGTGTTGCGATTTACATATTCGCGTTG
1 CGAATTTGACTTCTGTGTTGCGATTTACATATTCGCGTTG
* * *
2131595 CGAATTTAACTTTTGTGTTGCGAATTTGAC---TTCAGTGTTG
1 CGAATTTGACTTCTGTGTTGCG-ATTT-ACATATTC-GCGTTG
2131635 CGAATTTGACTTCTGTGTTGCGATTTACATATTCGCGTTG
1 CGAATTTGACTTCTGTGTTGCGATTTACATATTCGCGTTG
2131675 CGAATTTG
1 CGAATTTG
2131683 GAAACTGGGT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
38 2 0.03
39 7 0.09
40 58 0.76
41 7 0.09
42 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.43
Consensus pattern (40 bp):
CGAATTTGACTTCTGTGTTGCGATTTACATATTCGCGTTG
Found at i:2133683 original size:102 final size:103
Alignment explanation
Indices: 2133546--2133773 Score: 305
Period size: 102 Copynumber: 2.2 Consensus size: 103
2133536 TGATCATCTA
* *
2133546 TTCGACACAATTATCAATATAAATTGTGATGAATTTGTTTGACACTAAAAATATATTTTGTGACC
1 TTCGACACTATTATC-A-ATAAATTGTGATAAATTTGTTTGACACTAAAAATATATTTTGTGACC
**
2133611 ATTAATATTGTCACACTAA-GTAATTTTAGTGACCAAATG
64 ACCAATATTGTCACACTAAGGTAATTTTAGTGACCAAATG
* * * *
2133650 TTCGATACTATTATCAATAAATTGTGATAAATTTGTTTGACACTGAAAGTATATTTTGTTACCAC
1 TTCGACACTATTATCAATAAATTGTGATAAATTTGTTTGACACTAAAAATATATTTTGTGACCAC
* ** *
2133715 CAATGTTGTCACACTAAGTGTTTTTTTAGTGACTAAATG
66 CAATATTGTCACACTAAG-GTAATTTTAGTGACCAAATG
*
2133754 TTTGACACTATTATCAATAA
1 TTCGACACTATTATCAATAA
2133774 TTTAGTCGCT
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
102 59 0.55
103 1 0.01
104 48 0.44
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (103 bp):
TTCGACACTATTATCAATAAATTGTGATAAATTTGTTTGACACTAAAAATATATTTTGTGACCAC
CAATATTGTCACACTAAGGTAATTTTAGTGACCAAATG
Found at i:2135493 original size:15 final size:15
Alignment explanation
Indices: 2135473--2135508 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
2135463 AATTGATAAA
2135473 AAAACTAATAGTTGG
1 AAAACTAATAGTTGG
2135488 AAAACTAATAGTTGG
1 AAAACTAATAGTTGG
2135503 AAAACT
1 AAAACT
2135509 GCGTTGGTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.25
Consensus pattern (15 bp):
AAAACTAATAGTTGG
Found at i:2148421 original size:21 final size:21
Alignment explanation
Indices: 2148370--2148421 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
2148360 TCCTTAAGGA
*
2148370 GTGGTCCTTCGGGACATCTAT
1 GTGGTCCTTTGGGACATCTAT
*
2148391 GTGGTCCTTTGGGACATTTAT
1 GTGGTCCTTTGGGACATCTAT
2148412 GTGGTCCTTT
1 GTGGTCCTTT
2148422 AGAACAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.40
Consensus pattern (21 bp):
GTGGTCCTTTGGGACATCTAT
Found at i:2153345 original size:23 final size:23
Alignment explanation
Indices: 2153318--2153362 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
2153308 TTTTTATTTA
2153318 ATTTT-TCCATTTTAACTTGATTG
1 ATTTTATCCA-TTTAACTTGATTG
**
2153341 ATTTTATTTATTTAACTTGATT
1 ATTTTATCCATTTAACTTGATT
2153363 TTTATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.24, C:0.09, G:0.07, T:0.60
Consensus pattern (23 bp):
ATTTTATCCATTTAACTTGATTG
Found at i:2153373 original size:22 final size:22
Alignment explanation
Indices: 2153328--2153377 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
2153318 ATTTTTCCAT
2153328 TTTAACTTGATTGATTTTATTTA
1 TTTAACTTGATT-ATTTTATTTA
2153351 TTTAACTTGATT-TTTATATTTA
1 TTTAACTTGATTATTT-TATTTA
2153373 TTTAA
1 TTTAA
2153378 TATTTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.12
22 11 0.42
23 12 0.46
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (22 bp):
TTTAACTTGATTATTTTATTTA
Found at i:2153382 original size:19 final size:19
Alignment explanation
Indices: 2153345--2153431 Score: 56
Period size: 22 Copynumber: 4.5 Consensus size: 19
2153335 TGATTGATTT
2153345 TATTTATTTAACTTGATTTTTA
1 TATTTATTTAA--T-ATTTTTA
2153367 TATTTATTTAATATTTTTAA
1 TATTTATTTAATATTTTT-A
**
2153387 TAATATT-TTTAAT-TTTAAA
1 T-AT-TTATTTAATATTTTTA
* *
2153406 TAATTATTT-TTATTTTTA
1 TATTTATTTAATATTTTTA
2153424 -ATTTATTT
1 TATTTATTT
2153432 GTTTATTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
17 10 0.19
18 8 0.15
19 8 0.15
20 6 0.11
21 8 0.15
22 13 0.25
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (19 bp):
TATTTATTTAATATTTTTA
Found at i:2153390 original size:12 final size:12
Alignment explanation
Indices: 2153375--2153399 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2153365 TATATTTATT
2153375 TAATATTTTTAA
1 TAATATTTTTAA
2153387 TAATATTTTTAA
1 TAATATTTTTAA
2153399 T
1 T
2153400 TTTAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TAATATTTTTAA
Found at i:2153415 original size:20 final size:20
Alignment explanation
Indices: 2153379--2153446 Score: 68
Period size: 19 Copynumber: 3.5 Consensus size: 20
2153369 TTTATTTAAT
*
2153379 ATTTTTAATAA-TATTTTTA
1 ATTTTAAATAATTATTTTTA
2153398 ATTTTAAATAATTATTTTTA
1 ATTTTAAATAATTATTTTTA
* * * *
2153418 TTTTTAATTTATT-TGTTTA
1 ATTTTAAATAATTATTTTTA
*
2153437 TTTTTAAATA
1 ATTTTAAATA
2153447 TTTTGTATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
19 23 0.56
20 18 0.44
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (20 bp):
ATTTTAAATAATTATTTTTA
Found at i:2153451 original size:19 final size:19
Alignment explanation
Indices: 2153394--2153452 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
2153384 TAATAATATT
*
2153394 TTTAATTTTAAATAATTATT-
1 TTTATTTTTAAAT-ATT-TTG
*
2153414 TTTATTTTT-AATTTATTTG
1 TTTATTTTTAAATAT-TTTG
2153433 TTTATTTTTAAATATTTTG
1 TTTATTTTTAAATATTTTG
2153452 T
1 T
2153453 ATTTATTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 3 0.09
19 18 0.55
20 12 0.36
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTATTTTTAAATATTTTG
Found at i:2158819 original size:35 final size:35
Alignment explanation
Indices: 2158780--2158850 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
2158770 AAAAAATAAG
* *
2158780 TTTATGGGCCCTGCTTTTAATTTAGTTTATTAATA
1 TTTATGGGCCCTGCTTTTAATTTAATATATTAATA
*
2158815 TTTATGGGTCCTGCTTTTAATTTAATATATTAATA
1 TTTATGGGCCCTGCTTTTAATTTAATATATTAATA
2158850 T
1 T
2158851 AATTTTTAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.25, C:0.10, G:0.13, T:0.52
Consensus pattern (35 bp):
TTTATGGGCCCTGCTTTTAATTTAATATATTAATA
Found at i:2166343 original size:59 final size:59
Alignment explanation
Indices: 2166291--2166404 Score: 142
Period size: 59 Copynumber: 1.9 Consensus size: 59
2166281 TGGTCCCTTT
* * *
2166291 ATTATAGGATTTTATTTTGTTGAA-TCCTCTGATTATT-AAAGTTACAAAATGGTTACTCG
1 ATTATAGGATATCATTTTGTT-AAGTCCTC-GATTATTAAAAGTTACAAAATGGTCACTCG
* * *
2166350 ATTATAGGGTATCATTTTGTTAAGTCGTCGATTATTAAAAGTTATAAAATGGTCA
1 ATTATAGGATATCATTTTGTTAAGTCCTCGATTATTAAAAGTTACAAAATGGTCA
2166405 ATTGACTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 9 0.19
59 38 0.81
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (59 bp):
ATTATAGGATATCATTTTGTTAAGTCCTCGATTATTAAAAGTTACAAAATGGTCACTCG
Found at i:2167931 original size:182 final size:182
Alignment explanation
Indices: 2167281--2168180 Score: 1366
Period size: 182 Copynumber: 5.0 Consensus size: 182
2167271 TAACTAAATT
* * **
2167281 AAAATATTTATAATTTTATCACTAA-TTTTTAATTATTTTTTTGGTGTGAAAGAGTCATTAAAGG
1 AAAATATTTATAATTTTATCACTAATTTTTTAATTA-ATTTTT--TGTGAAAGGGTCATTAAACA
* * *
2167345 TCAACGATGTAATGATGTGATCGTTATCTTTTTCTATTTTATAAATTTATCAACTCCTCCGTCTC
63 TCAACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTC
* * * * *
2167410 ATTATTGATCAATTGCCATCAAATATTAATTTTCATTCACGATATAATTAATCTAA
128 ATTATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAAATTAATAT-A
*
2167466 AAAATATTTATAA-TTTATCACTAATATTTTAATTAATTTTTTGTGAAAAGGGTCATTAAACATC
1 AAAATATTTATAATTTTATCACTAATTTTTTAATTAATTTTTTGTG-AAAGGGTCATTAAACATC
* * * **
2167530 AACAATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAAGTATCAATTCCTTTGTCTCAT
65 AACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTCAT
*
2167595 TATTGATCAATTGTCGTCAAATATTAATTGTCATTCACAATAAAATTAATATA
130 TATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAAATTAATATA
*
2167648 AAAA-AATTATAATTTTATCACTAATTTTTTTAATT-ATTTTTTGTGAAAGGGTCATTAAACATC
1 AAAATATTTATAATTTTATCACTAA-TTTTTTAATTAATTTTTTGTGAAAGGGTCATTAAACATC
* *
2167711 AACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAAAAAATTATCAACTCCCCCGTCTCAT
65 AACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTCAT
2167776 TATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAAATTAATATA
130 TATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAAATTAATATA
*
2167829 AAAATATTTATAATTTTATCACTAATTTTTTAATTATTTTTTTGTGAAAGGGTCATTAAACATCA
1 AAAATATTTATAATTTTATCACTAATTTTTTAATTAATTTTTTGTGAAAGGGTCATTAAACATCA
* * * *
2167894 ACGATGTGATGATGTGATTGTTATCTTTTTTTATTTTAGAAAATTGTCAACTCCTTCGTCTCATT
66 ACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTCATT
*
2167959 ATTGATCAATTGCCATCAAATATTAATTGTCATTCACAATAAAATTAATATA
131 ATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAAATTAATATA
*
2168011 AAAATATTTATAATTTT-TCACTAATTTTTTTAATTAATTTTTT-T-AAAGGATCATTAAACATC
1 AAAATATTTATAATTTTATCACTAA-TTTTTTAATTAATTTTTTGTGAAAGGGTCATTAAACATC
* * *
2168073 AACGATGTGATGATGTGGTTGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTTAT
65 AACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTCAT
* * *
2168138 TATTGATCAATTGTCGTTAAATATTAATTGTCATT-ATAATAAA
130 TATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAA
2168181 TATATATATA
Statistics
Matches: 659, Mismatches: 49, Indels: 20
0.91 0.07 0.03
Matches are distributed among these distances:
179 7 0.01
180 109 0.17
181 157 0.24
182 221 0.34
183 127 0.19
184 16 0.02
185 22 0.03
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (182 bp):
AAAATATTTATAATTTTATCACTAATTTTTTAATTAATTTTTTGTGAAAGGGTCATTAAACATCA
ACGATGTGATGATGTGATCGTTATCTTTTTCTATTTTAGAAAATTATCAACTCCTCCGTCTCATT
ATTGATCAATTGCCGTCAAATATTAATTGTCATTCACAATAAAATTAATATA
Found at i:2168048 original size:13 final size:13
Alignment explanation
Indices: 2168032--2168056 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2168022 AATTTTTCAC
2168032 TAATTTTTTTAAT
1 TAATTTTTTTAAT
2168045 TAATTTTTTTAA
1 TAATTTTTTTAA
2168057 AGGATCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TAATTTTTTTAAT
Found at i:2168187 original size:2 final size:2
Alignment explanation
Indices: 2168180--2168209 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
2168170 ATTATAATAA
*
2168180 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2168210 TAGATTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:2168972 original size:21 final size:20
Alignment explanation
Indices: 2168946--2169004 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
2168936 ATTATCCAAT
*
2168946 AAACTTGACATACATAACAAC
1 AAACTTGAAAT-CATAACAAC
2168967 AAACTTGAAATCTATAACAAC
1 AAACTTGAAATC-ATAACAAC
*
2168988 CAACTTGAAATCCATAA
1 AAACTTGAAAT-CATAA
2169005 TAATAAATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 32 0.94
22 1 0.03
ACGTcount: A:0.51, C:0.22, G:0.05, T:0.22
Consensus pattern (20 bp):
AAACTTGAAATCATAACAAC
Found at i:2172254 original size:26 final size:29
Alignment explanation
Indices: 2172222--2172288 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 29
2172212 TGGTCGTTAA
2172222 GCTCGTTAAAA-TT-TTGCTCGACTC-GT
1 GCTCGTTAAAATTTGTTGCTCGACTCAGT
*
2172248 GCTCGTTAAGAAAATTTGTTGCTCGACTCATT
1 GCTCGTT---AAAATTTGTTGCTCGACTCAGT
2172280 GCTCGTTAA
1 GCTCGTTAA
2172289 GCTCACCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
26 7 0.21
29 6 0.18
30 2 0.06
31 11 0.32
32 8 0.24
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.37
Consensus pattern (29 bp):
GCTCGTTAAAATTTGTTGCTCGACTCAGT
Found at i:2172660 original size:20 final size:20
Alignment explanation
Indices: 2172614--2172953 Score: 387
Period size: 20 Copynumber: 16.7 Consensus size: 20
2172604 TGAAAAGAAG
2172614 ATCGCAACGCGATCTTCCAAGA
1 ATCGCAACGCGA--TTCCAAGA
* *
2172636 ATCGCAATGCGATT-CATAAA
1 ATCGCAACGCGATTCCA-AGA
2172656 ATCGCAACGCGATCTTCCAAGA
1 ATCGCAACGCGA--TTCCAAGA
*
2172678 ATCGCAACGCGATT-CAGAAA
1 ATCGCAACGCGATTCCA-AGA
*
2172698 ATCGCAATGCGATTCCAAGA
1 ATCGCAACGCGATTCCAAGA
*
2172718 ATTGCAACGCGATCTTCCAAGA
1 ATCGCAACGCGA--TTCCAAGA
2172740 ATCGCAACGCGATT--AAGAAA
1 ATCGCAACGCGATTCCAAG--A
2172760 ATCGCAACGCGATT--AAGAAA
1 ATCGCAACGCGATTCCAAG--A
2172780 ATCGCAACGCGATT--AAGAAA
1 ATCGCAACGCGATTCCAAG--A
2172800 ATCGCAACGCGATTCCAAGA
1 ATCGCAACGCGATTCCAAGA
2172820 ATCGCAACGCGATT--AAGATA
1 ATCGCAACGCGATTCCAAG--A
2172840 ATCGCAACGCGATTCCAAGA
1 ATCGCAACGCGATTCCAAGA
2172860 ATCGCAACGCGATTCCAAGA
1 ATCGCAACGCGATTCCAAGA
2172880 ATCGCAACGCGATTCCAAGA
1 ATCGCAACGCGATTCCAAGA
*
2172900 ATCGCAACGCGATT-CAGAAA
1 ATCGCAACGCGATTCCA-AGA
2172920 ATCGCAACGCGATTCCAAGA
1 ATCGCAACGCGATTCCAAGA
*
2172940 ATCGTAACGCGATT
1 ATCGCAACGCGATT
2172954 AAGAAAATCG
Statistics
Matches: 287, Mismatches: 13, Indels: 38
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.02
19 6 0.02
20 217 0.76
21 4 0.01
22 52 0.18
23 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGATTCCAAGA
Found at i:2172962 original size:20 final size:20
Alignment explanation
Indices: 2172552--2172981 Score: 330
Period size: 20 Copynumber: 21.2 Consensus size: 20
2172542 AATGACCAAC
**
2172552 AAAATCGCAACGCGA-TATC
1 AAAATCGCAACGCGATTAAG
* * *
2172571 AAAACCGCAACGTGATTTAG
1 AAAATCGCAACGCGATTAAG
* * *
2172591 AAAAGCGCAACGTTGA-AAAG
1 AAAATCGCAACG-CGATTAAG
* ***
2172611 AAGATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TAAG
* * *
2172632 AAGAATCGCAATGCGATTCAT
1 AA-AATCGCAACGCGATTAAG
***
2172653 AAAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TAAG
*
2172674 AAGAATCGCAACGCGATTCAG
1 AA-AATCGCAACGCGATTAAG
*
2172695 AAAATCGCAATGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
* ***
2172717 --AATTGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TAAG
2172736 AAGAATCGCAACGCGATTAAG
1 AA-AATCGCAACGCGATTAAG
2172757 AAAATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
2172777 AAAATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
2172797 AAAATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
2172819 --AATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
*
2172837 ATAATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
2172859 --AATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
2172879 --AATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
*
2172899 --AATCGCAACGCGATTCAG
1 AAAATCGCAACGCGATTAAG
2172917 AAAATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
*
2172939 --AATCGTAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
* *
2172957 AAAATCGCAATGCGATTTAG
1 AAAATCGCAACGCGATTAAG
2172977 AAAAT
1 AAAAT
2172982 GAGTAAATTC
Statistics
Matches: 342, Mismatches: 44, Indels: 49
0.79 0.10 0.11
Matches are distributed among these distances:
18 8 0.02
19 15 0.04
20 252 0.74
21 18 0.05
22 49 0.14
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (20 bp):
AAAATCGCAACGCGATTAAG
Found at i:2173088 original size:6 final size:6
Alignment explanation
Indices: 2173077--2173103 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
2173067 GACACGTATT
2173077 ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACC
2173104 CGAGACGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:2173611 original size:6 final size:6
Alignment explanation
Indices: 2173600--2173632 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
2173590 TCTCGTCTCG
2173600 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
2173633 AATACGTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:2173760 original size:20 final size:20
Alignment explanation
Indices: 2173735--2173914 Score: 145
Period size: 20 Copynumber: 8.8 Consensus size: 20
2173725 CTCATTTTCT
*
2173735 GAATCGCATTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
* *
2173755 GAATCGTGTTGCGATT-TTCT
1 GAATCGCGTTGCGATTCTT-G
2173775 GAATCGCGTTGCGATTCTCT-
1 GAATCGCGTTGCGATTCT-TG
* *
2173795 TAATCGCGTTGCGATT-TTCT
1 GAATCGCGTTGCGATTCTT-G
* *
2173815 GAATCGCATTGTGATTCTTG
1 GAATCGCGTTGCGATTCTTG
2173835 GAAGATCGCGTTGCGATTCTCT-
1 G-A-ATCGCGTTGCGATTCT-TG
* *
2173857 TAATCGCGTTGCGATT-TTCT
1 GAATCGCGTTGCGATTCTT-G
* *
2173877 GAATCGCATTGTGATTCTTG
1 GAATCGCGTTGCGATTCTTG
2173897 GAAGATCGCGTTGCGATT
1 G-A-ATCGCGTTGCGATT
2173915 TTCGCATTTT
Statistics
Matches: 128, Mismatches: 18, Indels: 26
0.74 0.10 0.15
Matches are distributed among these distances:
18 2 0.02
19 4 0.03
20 86 0.67
21 8 0.06
22 27 0.21
23 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (20 bp):
GAATCGCGTTGCGATTCTTG
Found at i:2173787 original size:40 final size:40
Alignment explanation
Indices: 2173728--2173872 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
2173718 GAATTTACTC
*
2173728 ATTTTCTGAATCGCATTGCGATTCTTGGAATCGTGTTGCG
1 ATTTTCTGAATCGCATTGCGATTCTTGGAATCGCGTTGCG
* *
2173768 ATTTTCTGAATCGCGTTGCGATTCTCT-TAATCGCGTTGCG
1 ATTTTCTGAATCGCATTGCGATTCT-TGGAATCGCGTTGCG
*
2173808 ATTTTCTGAATCGCATTGTGATTCTTGGAAGATCGCGTTGCG
1 ATTTTCTGAATCGCATTGCGATTCTTGG-A-ATCGCGTTGCG
* * *
2173850 ATTCTCTTAATCGCGTTGCGATT
1 ATTTTCTGAATCGCATTGCGATT
2173873 TTCTGAATCG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 58 0.64
41 2 0.02
42 30 0.33
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.40
Consensus pattern (40 bp):
ATTTTCTGAATCGCATTGCGATTCTTGGAATCGCGTTGCG
Found at i:2173858 original size:62 final size:62
Alignment explanation
Indices: 2173777--2173914 Score: 276
Period size: 62 Copynumber: 2.2 Consensus size: 62
2173767 GATTTTCTGA
2173777 ATCGCGTTGCGATTCTCTTAATCGCGTTGCGATTTTCTGAATCGCATTGTGATTCTTGGAAG
1 ATCGCGTTGCGATTCTCTTAATCGCGTTGCGATTTTCTGAATCGCATTGTGATTCTTGGAAG
2173839 ATCGCGTTGCGATTCTCTTAATCGCGTTGCGATTTTCTGAATCGCATTGTGATTCTTGGAAG
1 ATCGCGTTGCGATTCTCTTAATCGCGTTGCGATTTTCTGAATCGCATTGTGATTCTTGGAAG
2173901 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
2173915 TTCGCATTTT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 76 1.00
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.38
Consensus pattern (62 bp):
ATCGCGTTGCGATTCTCTTAATCGCGTTGCGATTTTCTGAATCGCATTGTGATTCTTGGAAG
Found at i:2173894 original size:40 final size:40
Alignment explanation
Indices: 2173732--2173918 Score: 173
Period size: 40 Copynumber: 4.6 Consensus size: 40
2173722 TTACTCATTT
* * *
2173732 TCTGAATCGCATTGCGATTCTT-GGAATCGTGTTGCGATTT
1 TCTGAATCGCGTTGCGATT-TTCGGAATCGCGTTGCGATTC
* ** *
2173772 TCTGAATCGCGTTGCGATTCTCTTAATCGCGTTGCGATTT
1 TCTGAATCGCGTTGCGATTTTCGGAATCGCGTTGCGATTC
* *
2173812 TCTGAATCGCATTGTGATTCTT-GGAAGATCGCGTTGCGATTC
1 TCTGAATCGCGTTGCGATT-TTCGG-A-ATCGCGTTGCGATTC
* * * *
2173854 TCTTAATCGCGTTGCGATTTTCTGAATCGCATTGTGATTC
1 TCTGAATCGCGTTGCGATTTTCGGAATCGCGTTGCGATTC
2173894 T-TGGAAGATCGCGTTGCGATTTTCG
1 TCT-G-A-ATCGCGTTGCGATTTTCG
2173919 CATTTTCTTG
Statistics
Matches: 120, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 64 0.53
41 6 0.05
42 48 0.40
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (40 bp):
TCTGAATCGCGTTGCGATTTTCGGAATCGCGTTGCGATTC
Found at i:2173979 original size:20 final size:20
Alignment explanation
Indices: 2173930--2174006 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
2173920 ATTTTCTTGA
2173930 ATATCGCGTTGCGATTTTCT
1 ATATCGCGTTGCGATTTTCT
* *
2173950 -TTTCAACGTTGCGATTTTCT
1 ATATC-GCGTTGCGATTTTCT
* *
2173970 AAATCGCGTTGCGATTTT-G
1 ATATCGCGTTGCGATTTTCT
2173989 ATATCGCGTTGCGATTTT
1 ATATCGCGTTGCGATTTT
2174007 GTTGGTCATT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
19 20 0.42
20 26 0.54
21 2 0.04
ACGTcount: A:0.17, C:0.18, G:0.21, T:0.44
Consensus pattern (20 bp):
ATATCGCGTTGCGATTTTCT
Found at i:2174243 original size:17 final size:18
Alignment explanation
Indices: 2174215--2174248 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2174205 TTAGTAAATT
2174215 AATAATTTTTTTGAATAA
1 AATAATTTTTTTGAATAA
2174233 AATAATTTTTTT-AATA
1 AATAATTTTTTTGAATA
2174249 TAAGTACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
AATAATTTTTTTGAATAA
Found at i:2174551 original size:23 final size:24
Alignment explanation
Indices: 2174519--2174588 Score: 99
Period size: 23 Copynumber: 3.0 Consensus size: 24
2174509 ATCTATCAAG
2174519 GAAGCTGCTGGAGGTCTTTCACGA
1 GAAGCTGCTGGAGGTCTTTCACGA
*
2174543 G-AGCTGCTGGAGGTCTTTTACG-
1 GAAGCTGCTGGAGGTCTTTCACGA
* *
2174565 GAAGCTGTTGGAGGTCTTCCACGA
1 GAAGCTGCTGGAGGTCTTTCACGA
2174589 AAATTACTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.03
23 38 0.95
24 1 0.03
ACGTcount: A:0.19, C:0.20, G:0.34, T:0.27
Consensus pattern (24 bp):
GAAGCTGCTGGAGGTCTTTCACGA
Found at i:2177206 original size:11 final size:11
Alignment explanation
Indices: 2177190--2177217 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
2177180 TCAATGACAA
2177190 TTTATTCATTT
1 TTTATTCATTT
2177201 TTTATTCATTT
1 TTTATTCATTT
2177212 TTTATT
1 TTTATT
2177218 TATTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTATTCATTT
Found at i:2183854 original size:26 final size:26
Alignment explanation
Indices: 2183818--2183867 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2183808 AGTCGAACTC
*
2183818 GAATTTAAACTTTTTAAGTTGAGTTT
1 GAATTTAAACTTTTTAAGTCGAGTTT
2183844 GAATTTAAACTTTTTAAGTCGAGT
1 GAATTTAAACTTTTTAAGTCGAGT
2183868 CAAACTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.46
Consensus pattern (26 bp):
GAATTTAAACTTTTTAAGTCGAGTTT
Found at i:2185089 original size:20 final size:21
Alignment explanation
Indices: 2185066--2185113 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
2185056 AATTCCTTAA
2185066 GAAAATTAGTG-A-ATATTTTT
1 GAAAATT-GTGAATATATTTTT
*
2185086 GAAAATTTTGAATATATTTTT
1 GAAAATTGTGAATATATTTTT
2185107 GAAAATT
1 GAAAATT
2185114 TATTATTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 8 0.32
21 15 0.60
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (21 bp):
GAAAATTGTGAATATATTTTT
Found at i:2195200 original size:322 final size:320
Alignment explanation
Indices: 2194595--2195236 Score: 982
Period size: 322 Copynumber: 2.0 Consensus size: 320
2194585 GATTCGATTG
* * *
2194595 GTGTTCATTACTAAAGATAACCCTTTTAGAGGTGTTGTGGAAGAGGTGGAGAACTTGATCGTTGA
1 GTGTTCATTACTAAAGATAACCCTTTTAGAGGTGTTATGGAAGAGGAGGAGAACTTGATCATTGA
* *
2194660 AGTGAAGAATTATTTTTGTTGAGTTTGGGTGACTCACTGAATTTGAGTGTTTTGTCTCGAAACCT
66 AGTGAAGAATTATTTTTATTGAGTTTGGGTGACTCACTGAATTTGAGTGTTTTGTCTCGAAAACT
* *
2194725 TCACACTTTCAAAATTCGCGTCAAGGTGGAGATTTGTTAGAGTTTGACTCGAATTAAAAGTGACA
131 TCACAATTTCAAAATTCGCGTCAAGGTAGAGATTTGTTAGAGTTTGACTCGAATTAAAAGTGACA
*
2194790 CAAATTAATTAATATTTAATTTGGAGAAGTAAAAATCCTAGTTTGATTAAAAATAGATAACTTTA
196 CAAATTAATTAATATTTAATTTGGAGAAGTAAAAATCCTAATTTGATTAAAAATAGATAACTTTA
*
2194855 TTAAACTAGATTTCTACTTTATTTAGTTTTTCTTTTTAATCAAGAATATATCCCTATAAAT
261 TTAAACTAGATTTCTACTTTATTTAGTTTTTCTTTGT-ATCAAGAATATATCCCTATAAAT
* *
2194916 GTGTTCATTACTAAAGATAACCCCTTTTAGGGGTGTTATGGAAG-GAGAGGAGAACTTGTTCATT
1 GTGTTCATTACTAAAGATAA-CCCTTTTAGAGGTGTTATGGAAGAG-GAGGAGAACTTGATCATT
* * * * *
2194980 GAAGTGAAGAATTGTTTTTATTGAGTTTGGGTGACTTATTGAATTTGGGTGTTTTGTCTTGAAAA
64 GAAGTGAAGAATTATTTTTATTGAGTTTGGGTGACTCACTGAATTTGAGTGTTTTGTCTCGAAAA
** * * * * *
2195045 CTTCGTAATTTCAGAATTTGTGTCAAGGTAGAGATTTGTTAGAGTTTGTCTCGAATTGAAAGTGA
129 CTTCACAATTTCAAAATTCGCGTCAAGGTAGAGATTTGTTAGAGTTTGACTCGAATTAAAAGTGA
* *
2195110 CACAAATTAATTAATATTTAATTTGG-GAAAGTAAGAATCCTAATTTGATTAAAAGTAGATAACT
194 CACAAATTAATTAATATTTAATTTGGAG-AAGTAAAAATCCTAATTTGATTAAAAATAGATAACT
* * *
2195174 TTATTAAACTAGATTTCTATTTTATTTAGTTTTTCTTTGTATCAAGTATCTATCCCTATAAAT
258 TTATTAAACTAGATTTCTACTTTATTTAGTTTTTCTTTGTATCAAGAATATATCCCTATAAAT
2195237 AGATACTAAG
Statistics
Matches: 290, Mismatches: 28, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
321 43 0.15
322 247 0.85
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (320 bp):
GTGTTCATTACTAAAGATAACCCTTTTAGAGGTGTTATGGAAGAGGAGGAGAACTTGATCATTGA
AGTGAAGAATTATTTTTATTGAGTTTGGGTGACTCACTGAATTTGAGTGTTTTGTCTCGAAAACT
TCACAATTTCAAAATTCGCGTCAAGGTAGAGATTTGTTAGAGTTTGACTCGAATTAAAAGTGACA
CAAATTAATTAATATTTAATTTGGAGAAGTAAAAATCCTAATTTGATTAAAAATAGATAACTTTA
TTAAACTAGATTTCTACTTTATTTAGTTTTTCTTTGTATCAAGAATATATCCCTATAAAT
Found at i:2196594 original size:34 final size:34
Alignment explanation
Indices: 2196534--2196630 Score: 133
Period size: 34 Copynumber: 2.8 Consensus size: 34
2196524 ACCCTATTTT
*
2196534 TTTGGGCT-TTTCTCTGGTTTTTCATAAGCGAAAAC
1 TTTGGG-TGTTTCTCT-ATTTTTCATAAGCGAAAAC
**
2196569 TTTGGGTGTTTCTCTATTTTTCATAAATGAAAAC
1 TTTGGGTGTTTCTCTATTTTTCATAAGCGAAAAC
*
2196603 TTTGGGTGTTTCTCTATTTTCCATAAGC
1 TTTGGGTGTTTCTCTATTTTTCATAAGC
2196631 AACCATCAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 42 0.76
35 13 0.24
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.46
Consensus pattern (34 bp):
TTTGGGTGTTTCTCTATTTTTCATAAGCGAAAAC
Found at i:2208648 original size:83 final size:83
Alignment explanation
Indices: 2208547--2208714 Score: 336
Period size: 83 Copynumber: 2.0 Consensus size: 83
2208537 TTTCTAGAAC
2208547 GGGATGGCTCTTCTTCATGGCATTCCATCCTTCGGTCACAGAAATAGCCTTGAGTTCCTTAGGAT
1 GGGATGGCTCTTCTTCATGGCATTCCATCCTTCGGTCACAGAAATAGCCTTGAGTTCCTTAGGAT
2208612 CATACAGTAACTAATCAG
66 CATACAGTAACTAATCAG
2208630 GGGATGGCTCTTCTTCATGGCATTCCATCCTTCGGTCACAGAAATAGCCTTGAGTTCCTTAGGAT
1 GGGATGGCTCTTCTTCATGGCATTCCATCCTTCGGTCACAGAAATAGCCTTGAGTTCCTTAGGAT
2208695 CATACAGTAACTAATCAG
66 CATACAGTAACTAATCAG
2208713 GG
1 GG
2208715 CAAGCCGAGG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (83 bp):
GGGATGGCTCTTCTTCATGGCATTCCATCCTTCGGTCACAGAAATAGCCTTGAGTTCCTTAGGAT
CATACAGTAACTAATCAG
Found at i:2210760 original size:60 final size:60
Alignment explanation
Indices: 2210685--2210828 Score: 218
Period size: 60 Copynumber: 2.4 Consensus size: 60
2210675 ATTGAGTCAT
* * *
2210685 TCAATTATTAAAAATTATAAAATAGTCATCAAATTACAAGGTG-TTACTTCGTTATGTTCC
1 TCAACTATTAAAAATTATAAAATAGTCATCAAATTACAAAGTGCTT-CTTCGTTATGATCC
*
2210745 TCAACTATTAAAAATTATAAAATAGTCATCAGATTACAAAGTGCTTCTTCGTTATGATCC
1 TCAACTATTAAAAATTATAAAATAGTCATCAAATTACAAAGTGCTTCTTCGTTATGATCC
* *
2210805 CCAACTATTAAAAGTTATAAAATA
1 TCAACTATTAAAAATTATAAAATA
2210829 ATAACTCAAT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
60 75 0.97
61 2 0.03
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (60 bp):
TCAACTATTAAAAATTATAAAATAGTCATCAAATTACAAAGTGCTTCTTCGTTATGATCC
Found at i:2211620 original size:27 final size:27
Alignment explanation
Indices: 2211585--2211651 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
2211575 ATTTTATAAA
* *
2211585 ATTATTAATTATTAACA-TATACTATTT
1 ATTAATAATTATTAACATTATAATA-TT
*
2211612 ATTAATAATT-TTAATATTATAATATT
1 ATTAATAATTATTAACATTATAATATT
*
2211638 ATAATATAATTATT
1 ATTA-ATAATTATT
2211652 TTATAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
26 10 0.30
27 21 0.64
28 2 0.06
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTAATAATTATTAACATTATAATATT
Found at i:2213798 original size:39 final size:41
Alignment explanation
Indices: 2213721--2213800 Score: 110
Period size: 39 Copynumber: 2.0 Consensus size: 41
2213711 AAAATATAAC
* *
2213721 TTTTGGTATCTAACTTTTATATTTATCTACAATCTGGTACT
1 TTTTGGTACCAAACTTTTATATTTATCTACAATCTGGTACT
* *
2213762 TTTTGGTACCAAAC-TTT-TATTTATGTACAATGTGGTACT
1 TTTTGGTACCAAACTTTTATATTTATCTACAATCTGGTACT
2213801 CAAATATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 20 0.57
40 3 0.09
41 12 0.34
ACGTcount: A:0.25, C:0.14, G:0.12, T:0.49
Consensus pattern (41 bp):
TTTTGGTACCAAACTTTTATATTTATCTACAATCTGGTACT
Found at i:2217624 original size:15 final size:15
Alignment explanation
Indices: 2217604--2217633 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2217594 TATCACAATC
2217604 GCGCAGGATTTCGGG
1 GCGCAGGATTTCGGG
2217619 GCGCAGGATTTCGGG
1 GCGCAGGATTTCGGG
2217634 AGCACCGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.47, T:0.20
Consensus pattern (15 bp):
GCGCAGGATTTCGGG
Found at i:2219332 original size:14 final size:14
Alignment explanation
Indices: 2219315--2219345 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
2219305 TATATATATA
2219315 TATATATTTATTAT
1 TATATATTTATTAT
2219329 TATATATTTATTAT
1 TATATATTTATTAT
2219343 TAT
1 TAT
2219346 TACAATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATATATTTATTAT
Found at i:2219334 original size:20 final size:17
Alignment explanation
Indices: 2219311--2219347 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
2219301 CACATATATA
*
2219311 TATATATATATTTATTAT
1 TATATATTTA-TTATTAT
2219329 TATATATTTATTATTAT
1 TATATATTTATTATTAT
2219346 TA
1 TA
2219348 CAATTACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATATTTATTATTAT
Found at i:2227495 original size:22 final size:22
Alignment explanation
Indices: 2227469--2227553 Score: 73
Period size: 22 Copynumber: 3.8 Consensus size: 22
2227459 TTGGTGCAGA
*
2227469 GGGAATCAATACCCCCTGGAAG
1 GGGAATCGATACCCCCTGGAAG
* * *
2227491 GGGAAACGATTCCCCCTTTGAAG
1 GGGAATCGATACCCCC-TGGAAG
* * **
2227514 GGGAACCGATTCCCCC-CCACAG
1 GGGAATCGATACCCCCTGGA-AG
2227536 GGGAATCGATACCCCCTG
1 GGGAATCGATACCCCCTG
2227554 AGGGTTCTGG
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 1 0.02
22 29 0.58
23 20 0.40
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.15
Consensus pattern (22 bp):
GGGAATCGATACCCCCTGGAAG
Found at i:2229150 original size:18 final size:18
Alignment explanation
Indices: 2229112--2229152 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
2229102 AGAACACCAC
*
2229112 GAGGAACAAGCACAAGTA
1 GAGGAACAAGCACAAGCA
2229130 GAGGAACAAGCAC-AGCCA
1 GAGGAACAAGCACAAG-CA
2229148 GAGGA
1 GAGGA
2229153 TCAAATGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.46, C:0.20, G:0.32, T:0.02
Consensus pattern (18 bp):
GAGGAACAAGCACAAGCA
Found at i:2232674 original size:20 final size:20
Alignment explanation
Indices: 2232624--2232674 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
2232614 CTCATATTTT
* *
2232624 CATCTTTACAGTTGCATTCA
1 CATCTTTACATTTACATTCA
* *
2232644 CATCTTTACATTTACGTTCG
1 CATCTTTACATTTACATTCA
2232664 CATCTTTACAT
1 CATCTTTACAT
2232675 CTTTATATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.43
Consensus pattern (20 bp):
CATCTTTACATTTACATTCA
Found at i:2232687 original size:48 final size:48
Alignment explanation
Indices: 2232624--2232774 Score: 203
Period size: 48 Copynumber: 3.1 Consensus size: 48
2232614 CTCATATTTT
*
2232624 CATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCGCATCTTTA
1 CATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATCTTTA
* * ** * * ** *
2232672 CATCTTTATATTTGCATTCTTATCTTTTCATTTGCACTCTCATCTTTA
1 CATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATCTTTA
*
2232720 CATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATATTTA
1 CATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATCTTTA
2232768 CATCTTT
1 CATCTTT
2232775 GTATTTGCAT
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.23, C:0.24, G:0.06, T:0.48
Consensus pattern (48 bp):
CATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATCTTTA
Found at i:2232698 original size:20 final size:21
Alignment explanation
Indices: 2232672--2232719 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
2232662 CGCATCTTTA
*
2232672 CATCTTTAT-ATTTGCATTCT
1 CATCTTTATCATTTGCACTCT
*
2232692 TATCTTT-TCATTTGCACTCT
1 CATCTTTATCATTTGCACTCT
2232712 CATCTTTA
1 CATCTTTA
2232720 CATCTTTACA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.19, C:0.23, G:0.04, T:0.54
Consensus pattern (21 bp):
CATCTTTATCATTTGCACTCT
Found at i:2232724 original size:28 final size:28
Alignment explanation
Indices: 2232693--2232750 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
2232683 TTGCATTCTT
* * *
2232693 ATCTTTTCATTTGCACTCTCATCTTTAC
1 ATCTTTACAGTTGCACTCACATCTTTAC
*
2232721 ATCTTTACAGTTGCATTCACATCTTTAC
1 ATCTTTACAGTTGCACTCACATCTTTAC
2232749 AT
1 AT
2232751 TTACGTTCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.22, C:0.26, G:0.05, T:0.47
Consensus pattern (28 bp):
ATCTTTACAGTTGCACTCACATCTTTAC
Found at i:2232744 original size:20 final size:20
Alignment explanation
Indices: 2232719--2232769 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
2232709 TCTCATCTTT
*
2232719 ACATCTTTACAGTTGCATTC
1 ACATCTTTACAGTTACATTC
* *
2232739 ACATCTTTACATTTACGTTC
1 ACATCTTTACAGTTACATTC
*
2232759 ACATATTTACA
1 ACATCTTTACA
2232770 TCTTTGTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (20 bp):
ACATCTTTACAGTTACATTC
Found at i:2232768 original size:96 final size:96
Alignment explanation
Indices: 2232604--2232794 Score: 321
Period size: 96 Copynumber: 2.0 Consensus size: 96
2232594 ACACCTTTGG
* * *
2232604 CATTTGCACTCTCATATTTTCATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCGCATCT
1 CATTTGCACTCTCATATTTACATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATAT
2232669 TTACATCTTTATATTTGCATTCT-TATCTTTT
66 TTACATCTTTATATTTGCATT-TGTATCTTTT
*
2232700 CATTTGCACTCTCATCTTTACATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATAT
1 CATTTGCACTCTCATATTTACATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATAT
*
2232765 TTACATCTTTGTATTTGCATTTGTATCTTT
66 TTACATCTTTATATTTGCATTTGTATCTTT
2232795 GCATCTTTAC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
95 1 0.01
96 88 0.99
ACGTcount: A:0.21, C:0.23, G:0.07, T:0.49
Consensus pattern (96 bp):
CATTTGCACTCTCATATTTACATCTTTACAGTTGCATTCACATCTTTACATTTACGTTCACATAT
TTACATCTTTATATTTGCATTTGTATCTTTT
Found at i:2232793 original size:48 final size:47
Alignment explanation
Indices: 2232645--2232794 Score: 165
Period size: 48 Copynumber: 3.1 Consensus size: 47
2232635 TTGCATTCAC
*
2232645 ATCTTTACATTTACGTTCGCATCTTTACATCTTTATATTTGCATTCTT
1 ATCTTTACATTTACGTTCACATCTTTACATCTTTATATTTGCATT-TT
* * ** * * * **
2232693 ATCTTTTCATTTGCACTCTCATCTTTACATCTTTACAGTTGCATTCAC
1 ATCTTTACATTTACGTTCACATCTTTACATCTTTATATTTGCATT-TT
* *
2232741 ATCTTTACATTTACGTTCACATATTTACATCTTTGTATTTGCATTTGT
1 ATCTTTACATTTACGTTCACATCTTTACATCTTTATATTTGCATTT-T
2232789 ATCTTT
1 ATCTTT
2232795 GCATCTTTAC
Statistics
Matches: 81, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
48 81 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.51
Consensus pattern (47 bp):
ATCTTTACATTTACGTTCACATCTTTACATCTTTATATTTGCATTTT
Found at i:2232823 original size:28 final size:28
Alignment explanation
Indices: 2232740--2232823 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 28
2232730 GTTGCATTCA
* * *
2232740 CATCTTTACATTTACGTTCACATATTTA
1 CATCTTTACATTTGCGTTCGCATATTTG
** * * * *
2232768 CATCTTTGTATTTGCATTTGTATCTTTG
1 CATCTTTACATTTGCGTTCGCATATTTG
*
2232796 CATCTTTACATTTGTGTTCGCATATTTG
1 CATCTTTACATTTGCGTTCGCATATTTG
2232824 TATTTGTACT
Statistics
Matches: 40, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (28 bp):
CATCTTTACATTTGCGTTCGCATATTTG
Found at i:2234326 original size:24 final size:23
Alignment explanation
Indices: 2234317--2234358 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
2234307 ACAAAGAAGA
2234317 AAGA-AAAAG-AAA-AAAGAAAGA
1 AAGAGAAAAGAAAACAAAG-AAGA
2234338 AAGAGAAAAGAAAACAAAGAA
1 AAGAGAAAAGAAAACAAAGAA
2234359 AAGGGGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.22
22 5 0.28
23 5 0.28
24 4 0.22
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (23 bp):
AAGAGAAAAGAAAACAAAGAAGA
Found at i:2234333 original size:17 final size:17
Alignment explanation
Indices: 2234313--2234346 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2234303 CATAACAAAG
2234313 AAGAAAGAAAAAGAAAA
1 AAGAAAGAAAAAGAAAA
*
2234330 AAGAAAGAAAGAGAAAA
1 AAGAAAGAAAAAGAAAA
2234347 GAAAACAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAAAAGAAAA
Found at i:2234346 original size:15 final size:15
Alignment explanation
Indices: 2234309--2234360 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 15
2234299 AAGACATAAC
*
2234309 AAAGAAGAAAG-AA-
1 AAAGAAAAAAGAAAG
2234322 AAAGAAAAAAGAAAG
1 AAAGAAAAAAGAAAG
* *
2234337 AAAGAGAAAAGAAAAC
1 AAAGAAAAAAG-AAAG
2234353 AAAGAAAA
1 AAAGAAAA
2234361 GGGGGAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 10 0.31
14 2 0.06
15 10 0.31
16 10 0.31
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAGAAAG
Found at i:2234361 original size:21 final size:22
Alignment explanation
Indices: 2234306--2234361 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 22
2234296 GAGAAGACAT
2234306 AACAAAGAAGAA-AGAAAAAG-A
1 AACAAAGAA-AAGAGAAAAAGAA
*
2234327 AA-AAAGAAAGAAAGAGAAAAGAA
1 AACAAAGAAA-AGAGA-AAAAGAA
2234350 AACAAAGAAAAG
1 AACAAAGAAAAG
2234362 GGGGAAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
19 1 0.03
20 7 0.24
21 5 0.17
22 5 0.17
23 4 0.14
24 7 0.24
ACGTcount: A:0.77, C:0.04, G:0.20, T:0.00
Consensus pattern (22 bp):
AACAAAGAAAAGAGAAAAAGAA
Found at i:2235052 original size:27 final size:28
Alignment explanation
Indices: 2234988--2235054 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
2234978 CAAATTAGCC
*
2234988 AACCTAAAACACATTACTTCCCCAAATT
1 AACCTAAAACACATTACCTCCCCAAATT
2235016 AACCTAAAACACATTACCTCCCC-AATT
1 AACCTAAAACACATTACCTCCCCAAATT
*
2235043 AACCTGAAACAC
1 AACCTAAAACAC
2235055 TCAACCTTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 15 0.41
28 22 0.59
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.21
Consensus pattern (28 bp):
AACCTAAAACACATTACCTCCCCAAATT
Found at i:2236633 original size:57 final size:57
Alignment explanation
Indices: 2236366--2236781 Score: 486
Period size: 57 Copynumber: 7.4 Consensus size: 57
2236356 TGATGTTTTC
* * * * * * *
2236366 AAATGAATTTTTAAAGAAGCTAAGCCTGATTTTCAGAGGTTTCTTAATGATTATTTT
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
* ** * * *
2236423 AAATGAATTTTTAAAGAAGCCAATTCTAATTGTTAGGGG-TTCTTAATGATAACTAT
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
* * * *
2236479 AAATGGATTTTTAAAGAAGGTAAG-CTTATTTTTAGGGGTTTCTTGATGATTACT-T
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
**
2236534 CAAATGTTTTTTTAAAGAAGCTAAGCCTAA-TTTTAGGGGTTTCTTGATGATAACTGT
1 -AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
*
2236591 AAATGAATTTTTAAAGAACCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
* *
2236648 AAAT-AGATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGAGT-ACT-T
1 AAATGA-ATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGA-TAACTGT
* * * * *
2236704 CAAATAAATTTTTAAAGAAGTTAAACTTAATTTTTAGGGGTTTCTTGATGATAATTGT
1 -AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
* *
2236762 ATATGAATTTTTAAATAAGC
1 AAATGAATTTTTAAAGAAGC
2236782 CTTATTTTCA
Statistics
Matches: 309, Mismatches: 39, Indels: 22
0.84 0.11 0.06
Matches are distributed among these distances:
55 13 0.04
56 121 0.39
57 172 0.56
58 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.40
Consensus pattern (57 bp):
AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT
Found at i:2236674 original size:113 final size:112
Alignment explanation
Indices: 2236366--2236781 Score: 491
Period size: 112 Copynumber: 3.7 Consensus size: 112
2236356 TGATGTTTTC
* * * * * * *
2236366 AAATGAATTTTTAAAGAAGCTAAGCCTGATTTTCAGAGGTTTCTTAATGATTATTTTAAATGAAT
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGTAAATGAAT
* ** *
2236431 TTTTAAAGAAGCCAATTCTAATTGTTAGGGG-TTCTTAATGATAACTAT
66 TTTTAAAGAAGCTAAGCCTAATT-TTAGGGGTTTCTTGATGATAACT-T
* * * * **
2236479 AAATGGATTTTTAAAGAAGGTAAG-CTTATTTTTAGGGGTTTCTTGATGATTACT-TCAAATGTT
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGT-AAATGAA
2236542 TTTTTAAAGAAGCTAAGCCTAATTTTAGGGGTTTCTTGATGATAACTGT
65 TTTTTAAAGAAGCTAAGCCTAATTTTAGGGGTTTCTTGATGATAACT-T
*
2236591 AAATGAATTTTTAAAGAACCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGTAAAT-AGA
1 AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGTAAATGA-A
*
2236655 TTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATGAGT-ACTT
65 TTTTTAAAGAAGCTAAGCCTAATTTT-AGGGGTTTCTTGATGA-TAACTT
* * * * * *
2236704 CAAATAAATTTTTAAAGAAGTTAAACTTAATTTTTAGGGGTTTCTTGATGATAATTGTATATGAA
1 -AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGTAAATGAA
*
2236769 TTTTTAAATAAGC
65 TTTTTAAAGAAGC
2236782 CTTATTTTCA
Statistics
Matches: 264, Mismatches: 30, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
111 8 0.03
112 87 0.33
113 80 0.30
114 87 0.33
115 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.40
Consensus pattern (112 bp):
AAATGAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGATAACTGTAAATGAAT
TTTTAAAGAAGCTAAGCCTAATTTTAGGGGTTTCTTGATGATAACTT
Found at i:2240049 original size:21 final size:19
Alignment explanation
Indices: 2240021--2240066 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
2240011 TCATTGAATC
2240021 ATTA-TTCTTAGCTCCTTAAT
1 ATTAGTTCTTAGCT--TTAAT
2240041 ATTAGTTCTTAGCTTTAAT
1 ATTAGTTCTTAGCTTTAAT
2240060 ACTTAGT
1 A-TTAGT
2240067 AGGATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50
Consensus pattern (19 bp):
ATTAGTTCTTAGCTTTAAT
Found at i:2254393 original size:20 final size:20
Alignment explanation
Indices: 2254364--2254406 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2254354 ATTCCATCAC
*
2254364 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
* *
2254384 ATGCATCTATATGATTCTAA
1 ATGCAACTATATGATCCTAA
2254404 ATG
1 ATG
2254407 GGCTCTTAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:2274586 original size:53 final size:53
Alignment explanation
Indices: 2274524--2274636 Score: 190
Period size: 53 Copynumber: 2.1 Consensus size: 53
2274514 GTGCGTAGCT
* *
2274524 GGACGAAGCATTTTCTCTTGTTCGTGGGTCGAGTAGTATCTATTCAATTTCTG
1 GGACGAAGCATTTTCTCTTGTTCGGGGGTCGAGTAGTATCTATTCAATCTCTG
* *
2274577 GGACGAAGCATTTTCTCTTGTTTGGGGGTCGAGTAGTATCTATTCAATCTGTG
1 GGACGAAGCATTTTCTCTTGTTCGGGGGTCGAGTAGTATCTATTCAATCTCTG
2274630 GGACGAA
1 GGACGAA
2274637 CCACTCCCAC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.36
Consensus pattern (53 bp):
GGACGAAGCATTTTCTCTTGTTCGGGGGTCGAGTAGTATCTATTCAATCTCTG
Found at i:2280687 original size:558 final size:558
Alignment explanation
Indices: 2279629--2280750 Score: 2210
Period size: 558 Copynumber: 2.0 Consensus size: 558
2279619 GATCATATCA
2279629 GAAC-CAATAACCGACTAGTGTTGTCTAAAGAAACTAACCGATAATCCATCAATCTCGGGTGCTT
1 GAACACAATAACCGACTAGTGTTGTCTAAAGAAACTAACCGATAATCCATCAATCTCGGGTGCTT
2279693 ATGATGATTAATATCCTGGAAAGCAGATAGTATTTCAGTTTTATCAAATGGTCTCGATAATTCCT
66 ATGATGATTAATATCCTGGAAAGCAGATAGTATTTCAGTTTTATCAAATGGTCTCGATAATTCCT
2279758 CATTTATTGAATGTGTTACCACCATATCAATGGCTTCCAAGATGCTAGTATTATGAATAGCATTA
131 CATTTATTGAATGTGTTACCACCATATCAATGGCTTCCAAGATGCTAGTATTATGAATAGCATTA
*
2279823 GCTGTGGAGAATAATTCCTTAAAATAATTAACCACAATTGACGATAATGTTTTCGTATTCTCTGT
196 GCTGTGGAGAATAATTCCTTAAAATAATTAACCACAATTGACGATAATGTTTTCGTATTCACTGT
2279888 CCAACAATCATTTCCATCATATAATCCTTTAATCCAATTCTTCTTTTGATGTTGAGTTGATCGAG
261 CCAACAATCATTTCCATCATATAATCCTTTAATCCAATTCTTCTTTTGATGTTGAGTTGATCGAG
2279953 CATGGAAGAATGTTGTATTATGATCTCTGAATGATAACCAATTGACTCTCGAACGTTGTCCCCAA
326 CATGGAAGAATGTTGTATTATGATCTCTGAATGATAACCAATTGACTCTCGAACGTTGTCCCCAA
2280018 TAATGTTCCTCCGTGTCAAGCAAATCATGGTCACGTTTGGCCTTGATTAGGCCAGCAAATCCCCT
391 TAATGTTCCTCCGTGTCAAGCAAATCATGGTCACGTTTGGCCTTGATTAGGCCAGCAAATCCCCT
2280083 TCGGCCTTGGCGTGCATTAAGTCTTGTTTATAAGTTTCCTTAGCTTTACTATGTGTTACCTTGTC
456 TCGGCCTTGGCGTGCATTAAGTCTTGTTTATAAGTTTCCTTAGCTTTACTATGTGTTACCTTGTC
2280148 AATTATAACCGTCCAAGTTGCCAATCTTACAACTTGGC
521 AATTATAACCGTCCAAGTTGCCAATCTTACAACTTGGC
2280186 GAACACAATAACCGACTAGTGTTGTCTAAAGAAACTAACCGATAATCCATCAATCTCGGGTGCTT
1 GAACACAATAACCGACTAGTGTTGTCTAAAGAAACTAACCGATAATCCATCAATCTCGGGTGCTT
*
2280251 ATGATGATTAATATCCTGGAAAGCAGATAGTATTTCAGTTTTATCAAATGGTCTTGATAATTCCT
66 ATGATGATTAATATCCTGGAAAGCAGATAGTATTTCAGTTTTATCAAATGGTCTCGATAATTCCT
2280316 CATTTATTGAATGTGTTACCACCATATCAATGGCTTCCAAGATGCTAGTATTATGAATAGCATTA
131 CATTTATTGAATGTGTTACCACCATATCAATGGCTTCCAAGATGCTAGTATTATGAATAGCATTA
2280381 GCTGTGGAGAATAATTCCTTAAAATAATTAACCACAATTGACGATAATGTTTTCGTATTCACTGT
196 GCTGTGGAGAATAATTCCTTAAAATAATTAACCACAATTGACGATAATGTTTTCGTATTCACTGT
2280446 CCAACAATCATTTCCATCATATAATCCTTTAATCCAATTCTTCTTTTGATGTTGAGTTGATCGAG
261 CCAACAATCATTTCCATCATATAATCCTTTAATCCAATTCTTCTTTTGATGTTGAGTTGATCGAG
2280511 CATGGAAGAATGTTGTATTATGATCTCTGAATGATAACCAATTGACTCTCGAACGTTGTCCCCAA
326 CATGGAAGAATGTTGTATTATGATCTCTGAATGATAACCAATTGACTCTCGAACGTTGTCCCCAA
2280576 TAATGTTCCTCCGTGTCAAGCAAATCATGGTCACGTTTGGCCTTGATTAGGCCAGCAAATCCCCT
391 TAATGTTCCTCCGTGTCAAGCAAATCATGGTCACGTTTGGCCTTGATTAGGCCAGCAAATCCCCT
2280641 TCGGCCTTGGCGTGCATTAAGTCTTGTTTATAAGTTTCCTTAGCTTTACTATGTGTTACCTTGTC
456 TCGGCCTTGGCGTGCATTAAGTCTTGTTTATAAGTTTCCTTAGCTTTACTATGTGTTACCTTGTC
2280706 AATTATAACCGTCCAAGTTGCCAATCTTACAACTTGGC
521 AATTATAACCGTCCAAGTTGCCAATCTTACAACTTGGC
*
2280744 GCACACA
1 GAACACA
2280751 GCATATAACT
Statistics
Matches: 561, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
557 4 0.01
558 557 0.99
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (558 bp):
GAACACAATAACCGACTAGTGTTGTCTAAAGAAACTAACCGATAATCCATCAATCTCGGGTGCTT
ATGATGATTAATATCCTGGAAAGCAGATAGTATTTCAGTTTTATCAAATGGTCTCGATAATTCCT
CATTTATTGAATGTGTTACCACCATATCAATGGCTTCCAAGATGCTAGTATTATGAATAGCATTA
GCTGTGGAGAATAATTCCTTAAAATAATTAACCACAATTGACGATAATGTTTTCGTATTCACTGT
CCAACAATCATTTCCATCATATAATCCTTTAATCCAATTCTTCTTTTGATGTTGAGTTGATCGAG
CATGGAAGAATGTTGTATTATGATCTCTGAATGATAACCAATTGACTCTCGAACGTTGTCCCCAA
TAATGTTCCTCCGTGTCAAGCAAATCATGGTCACGTTTGGCCTTGATTAGGCCAGCAAATCCCCT
TCGGCCTTGGCGTGCATTAAGTCTTGTTTATAAGTTTCCTTAGCTTTACTATGTGTTACCTTGTC
AATTATAACCGTCCAAGTTGCCAATCTTACAACTTGGC
Found at i:2285215 original size:31 final size:29
Alignment explanation
Indices: 2285158--2285216 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
2285148 TCACATGGTT
*
2285158 TATTACACAACTTATATCACATTTTCATG
1 TATTACACAACTTATATCACAATTTCATG
* *
2285187 TATTACACATATCTTATATTATAATTTCAT
1 TATTACACA-A-CTTATATCACAATTTCAT
2285217 ATATAATAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.36
30 1 0.04
31 15 0.60
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.46
Consensus pattern (29 bp):
TATTACACAACTTATATCACAATTTCATG
Found at i:2285859 original size:12 final size:12
Alignment explanation
Indices: 2285842--2285866 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2285832 TGATGACAAG
2285842 TCAAATTCAACT
1 TCAAATTCAACT
2285854 TCAAATTCAACT
1 TCAAATTCAACT
2285866 T
1 T
2285867 ATCAACTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (12 bp):
TCAAATTCAACT
Found at i:2306235 original size:29 final size:28
Alignment explanation
Indices: 2306202--2306271 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 28
2306192 AAAAATGTAG
* *
2306202 TAAAAATGAATAAAATAAAGAAGGTGAAA
1 TAAAAATAAATAAAATAAAGAA-GAGAAA
** *
2306231 TAAAAATAAATGCAATAAAGTAGAGAAA
1 TAAAAATAAATAAAATAAAGAAGAGAAA
*
2306259 T-AAAACAAATAAA
1 TAAAAATAAATAAA
2306272 GAAGATGTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
27 9 0.27
28 6 0.18
29 18 0.55
ACGTcount: A:0.67, C:0.03, G:0.13, T:0.17
Consensus pattern (28 bp):
TAAAAATAAATAAAATAAAGAAGAGAAA
Found at i:2306852 original size:110 final size:109
Alignment explanation
Indices: 2306712--2306925 Score: 358
Period size: 110 Copynumber: 2.0 Consensus size: 109
2306702 GAAATTGGCT
2306712 CTGAAAATTGTTTGTTGACAATCAGCCGCCCCTTCGCTT-TGAAGTTGAGCTTGTGTTGTCTCGA
1 CTGAAAATTGTTTGTTGACAATCAGCCGCCCCTTCG-TTGTGAAGTTGAGCTTGTGTTGTCTCGA
* *
2306776 GTTCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAA
65 GTTCAATATCCCTCGCTGTGAAGTTGAAATTGACTCTGAATGAAA
* *
2306821 CTGAAAAGTTGTTTGTTGACAATCAGTCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTTGA
1 CTGAAAA-TTGTTTGTTGACAATCAGCCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGA
*
2306886 GTTCAATATCCCTCGCTGTGAAGTTGAAATTGGCTCTGAA
65 GTTCAATATCCCTCGCTGTGAAGTTGAAATTGACTCTGAA
2306926 ACTGAGAAGC
Statistics
Matches: 98, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
109 9 0.09
110 89 0.91
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.36
Consensus pattern (109 bp):
CTGAAAATTGTTTGTTGACAATCAGCCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAG
TTCAATATCCCTCGCTGTGAAGTTGAAATTGACTCTGAATGAAA
Found at i:2307934 original size:19 final size:16
Alignment explanation
Indices: 2307892--2307922 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2307882 GAACCCACCT
2307892 TATTTTTTGTTCTTTC
1 TATTTTTTGTTCTTTC
*
2307908 TCTTTTTTGTTCTTT
1 TATTTTTTGTTCTTT
2307923 TTTCTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.06, T:0.77
Consensus pattern (16 bp):
TATTTTTTGTTCTTTC
Found at i:2307941 original size:8 final size:9
Alignment explanation
Indices: 2307920--2307949 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
2307910 TTTTTTGTTC
*
2307920 TTTTTTCTA
1 TTTTTTCAA
2307929 TTTTTTCAA
1 TTTTTTCAA
2307938 TTTTTTCAA
1 TTTTTTCAA
2307947 TTT
1 TTT
2307950 AGGGCGCCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTTCAA
Found at i:2318213 original size:15 final size:15
Alignment explanation
Indices: 2318193--2318224 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2318183 ATACAAAACT
*
2318193 AAAAATAGAAGATAA
1 AAAAATAAAAGATAA
2318208 AAAAATAAAAGATAA
1 AAAAATAAAAGATAA
2318223 AA
1 AA
2318225 TGAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.12
Consensus pattern (15 bp):
AAAAATAAAAGATAA
Found at i:2318248 original size:16 final size:17
Alignment explanation
Indices: 2318227--2318292 Score: 72
Period size: 16 Copynumber: 4.1 Consensus size: 17
2318217 AGATAAAATG
2318227 AAATATATA-AAATAAT
1 AAATATATATAAATAAT
2318243 AAATATATATAACAT-AT
1 AAATATATATAA-ATAAT
2318260 -AAT-TATAGT-AATAA-
1 AAATATATA-TAAATAAT
2318274 AAATATATATAAATAAT
1 AAATATATATAAATAAT
2318291 AA
1 AA
2318293 TGATATATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 15
0.74 0.00 0.26
Matches are distributed among these distances:
14 2 0.05
15 10 0.24
16 22 0.52
17 6 0.14
18 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AAATATATATAAATAAT
Found at i:2319842 original size:19 final size:20
Alignment explanation
Indices: 2319818--2319859 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
2319808 TTCATGTAAT
2319818 ATTTAATTT-T-ATTTTCAAA
1 ATTTAATTTATAATTTT-AAA
2319837 ATTTAATTTATAATTTTAAA
1 ATTTAATTTATAATTTTAAA
2319857 ATT
1 ATT
2319860 CATATTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.43
20 7 0.33
21 5 0.24
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTAATTTATAATTTTAAA
Found at i:2321366 original size:49 final size:49
Alignment explanation
Indices: 2321303--2321400 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 49
2321293 ATTTCAAATA
* * *
2321303 AAATTTGAGTCATAAAATGCGACTTATCAACTT-TAATAACTCAAAACTT
1 AAATTTGAATCATAAAATACGACTTATCAA-TTAGAATAACTCAAAACTT
* *
2321352 AAATTTGAATCATAAAATATGATTTATCAATTAGAATAACTCAAAACTT
1 AAATTTGAATCATAAAATACGACTTATCAATTAGAATAACTCAAAACTT
2321401 TTTGACTCGA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
48 2 0.05
49 41 0.95
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (49 bp):
AAATTTGAATCATAAAATACGACTTATCAATTAGAATAACTCAAAACTT
Found at i:2329900 original size:3 final size:3
Alignment explanation
Indices: 2329854--2329880 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2329844 ATTACCTTAC
2329854 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
2329881 TTAAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:2330904 original size:18 final size:16
Alignment explanation
Indices: 2330863--2330910 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
2330853 AAGACCAAAT
*
2330863 TTGTTATTTGCCCTTC
1 TTGTTATTTGCCCTTA
2330879 TT-TTATTTGCACCTATA
1 TTGTTATTTGC-CCT-TA
*
2330896 TTGTTATTTCCCCTT
1 TTGTTATTTGCCCTT
2330911 TTTTATGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
17 6 0.22
18 7 0.26
ACGTcount: A:0.12, C:0.23, G:0.08, T:0.56
Consensus pattern (16 bp):
TTGTTATTTGCCCTTA
Found at i:2337113 original size:21 final size:22
Alignment explanation
Indices: 2337092--2337147 Score: 80
Period size: 23 Copynumber: 2.6 Consensus size: 22
2337082 TTTGCACCGA
2337092 AATG-CCACATA-TTTATCTCG
1 AATGACCACATAGTTTATCTCG
*
2337112 AAGGACCACATAGTTTTATCTCG
1 AATGACCACATAG-TTTATCTCG
2337135 AATGACCACATAG
1 AATGACCACATAG
2337148 AATCATTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 3 0.10
21 7 0.23
23 21 0.68
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (22 bp):
AATGACCACATAGTTTATCTCG
Found at i:2344011 original size:20 final size:19
Alignment explanation
Indices: 2343957--2344017 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 19
2343947 GGAATTTCTT
*
2343957 CTTTACTTAAAGTATTGATAC
1 CTTTACTT--AGTATCGATAC
* *
2343978 CTTATCCTTGGTATCGATAC
1 CTT-TACTTAGTATCGATAC
2343998 CTTTACTTCAGTATCGATAC
1 CTTTACTT-AGTATCGATAC
2344018 TTCTTCAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 4 0.12
20 22 0.67
21 3 0.09
22 4 0.12
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.41
Consensus pattern (19 bp):
CTTTACTTAGTATCGATAC
Found at i:2348891 original size:4 final size:4
Alignment explanation
Indices: 2348882--2348920 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
2348872 TTTACGCCCC
2348882 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
2348921 ATATATATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
4 31 0.94
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:2354841 original size:23 final size:23
Alignment explanation
Indices: 2354815--2354862 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
2354805 TTTTCTTTTT
2354815 AAAAAATA-TA-ACTTATATTATTA
1 AAAAAATATTATA-TTA-ATTATTA
2354838 AAAAAATATTATATTAATTATTA
1 AAAAAATATTATATTAATTATTA
2354861 AA
1 AA
2354863 CATACAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 17 0.74
24 5 0.22
25 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAAAATATTATATTAATTATTA
Found at i:2354851 original size:19 final size:22
Alignment explanation
Indices: 2354813--2354853 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 22
2354803 TTTTTTCTTT
2354813 TTAAAAAATATAACTTATATTA
1 TTAAAAAATATAACTTATATTA
2354835 TTAAAAAA-AT-A-TTATATTA
1 TTAAAAAATATAACTTATATTA
2354854 ATTATTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 1 0.05
21 2 0.11
22 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TTAAAAAATATAACTTATATTA
Found at i:2360083 original size:25 final size:25
Alignment explanation
Indices: 2360055--2360154 Score: 164
Period size: 25 Copynumber: 4.0 Consensus size: 25
2360045 AGTTAGGGGA
**
2360055 TTAGGGTTTGAAACCCTAGTCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
2360080 TTAGGGTTTGAAACCCTAAACTGGT
1 TTAGGGTTTGAAACCCTAAACTGAT
2360105 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
2360130 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
2360155 GGGTTGTTGG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAACTGAT
Found at i:2360254 original size:3 final size:3
Alignment explanation
Indices: 2360233--2360274 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
2360223 TAATTAATTT
* **
2360233 ATA ATA AAA ATA ACG ATA ATA ATA ATA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2360275 CGGGAAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:2360496 original size:43 final size:43
Alignment explanation
Indices: 2360448--2360601 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
2360438 CTCGTACGCA
* *
2360448 ATGAAGAGGTCTGGTCGTCTAAGGGTGACACGGCTCCTACGTG
1 ATGAAGAGATCTGGTCATCTAAGGGTGACACGGCTCCTACGTG
* * *
2360491 ATGAAGAGATCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTG
1 ATGAAGAGATCTGGTCATCT-AAGG-G-TGACACGGCTCCTACGTG
* * * * * *
2360537 ATGAGGACG-GCTGGTTATCTATGGTTGACACGGCTCATACGTG
1 ATGAAGA-GATCTGGTCATCTAAGGGTGACACGGCTCCTACGTG
*
2360580 ATGAAGAGATCTGGCCATCTAA
1 ATGAAGAGATCTGGTCATCTAA
2360602 AGGAAGGGTG
Statistics
Matches: 87, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 47 0.54
44 4 0.05
45 4 0.05
46 30 0.34
47 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (43 bp):
ATGAAGAGATCTGGTCATCTAAGGGTGACACGGCTCCTACGTG
Found at i:2360557 original size:46 final size:45
Alignment explanation
Indices: 2360475--2360681 Score: 138
Period size: 43 Copynumber: 4.5 Consensus size: 45
2360465 TCTAAGGGTG
* *
2360475 ACACGGCTCCTACGTGATGAAGAGATCTGGCCATCTAAAGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGCCATCT-AAGGTGATA
* ** * *
2360521 ACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTATGGT--TG
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGCCATCTAAGGTGATA
* * *
2360564 ACACGGCTCATACGTGATGAAGAGATCTGGCCATCTAAAGGAAGGGTGATA
1 ACACGGCTCCTACGTGATGAGGAGAGCTGGCCATCT-----AA-GGTGATA
* * ** * *
2360615 ACTCGGTTCCTACGTGATGAGGACG-GCTGGTTATCCTAA--TGTTG
1 ACACGGCTCCTACGTGATGAGGA-GAGCTGGCCAT-CTAAGGTGATA
2360659 ACACGGCTCCTACGTGATGAGGA
1 ACACGGCTCCTACGTGATGAGGA
2360682 AGTCTGGTCA
Statistics
Matches: 123, Mismatches: 26, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
42 1 0.01
43 29 0.24
44 24 0.20
45 4 0.03
46 29 0.24
47 3 0.02
48 1 0.01
49 3 0.02
51 26 0.21
52 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (45 bp):
ACACGGCTCCTACGTGATGAGGAGAGCTGGCCATCTAAGGTGATA
Found at i:2361632 original size:12 final size:11
Alignment explanation
Indices: 2361610--2361672 Score: 58
Period size: 11 Copynumber: 5.9 Consensus size: 11
2361600 CATCTTGAAC
2361610 TTTTCTTTTTT
1 TTTTCTTTTTT
2361621 TTTTCTTTTTT
1 TTTTCTTTTTT
* ** *
2361632 TTTTCATCATA
1 TTTTCTTTTTT
*
2361643 TTTTC-ATTTT
1 TTTTCTTTTTT
*
2361653 TTTCCTTTTTT
1 TTTTCTTTTTT
2361664 TTTT-TTTTT
1 TTTTCTTTTT
2361673 AAGTGTAATA
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
10 10 0.25
11 30 0.75
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:2373001 original size:20 final size:22
Alignment explanation
Indices: 2372973--2373012 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2372963 AACAACCATT
2372973 AATACAAT-A-AAATTATGAAA
1 AATACAATAATAAATTATGAAA
*
2372993 AATATAATAATAAATTATGA
1 AATACAATAATAAATTATGA
2373013 TCTATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 1 0.06
22 9 0.53
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (22 bp):
AATACAATAATAAATTATGAAA
Found at i:2375282 original size:25 final size:25
Alignment explanation
Indices: 2375254--2375353 Score: 164
Period size: 25 Copynumber: 4.0 Consensus size: 25
2375244 AGTTAGGGGA
**
2375254 TTAGGGTTTGAAACCCTAGTCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
2375279 TTAGGGTTTGAAACCCTAAACTGGT
1 TTAGGGTTTGAAACCCTAAACTGAT
2375304 TTAGGGTTTGAAACCCTAAACTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
*
2375329 TTAGGGTTTGAAACCCTAATCTGAT
1 TTAGGGTTTGAAACCCTAAACTGAT
2375354 GGGTTGTTGG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (25 bp):
TTAGGGTTTGAAACCCTAAACTGAT
Found at i:2375453 original size:3 final size:3
Alignment explanation
Indices: 2375432--2375473 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
2375422 TAATTAATTT
* **
2375432 ATA ATA AAA ATA ACG ATA ATA ATA ATA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2375474 CGGAAAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:2376216 original size:44 final size:42
Alignment explanation
Indices: 2376168--2376265 Score: 142
Period size: 44 Copynumber: 2.3 Consensus size: 42
2376158 AGAAAAGACA
*
2376168 AATAAATAAATAAAATACACTAAAATTAAAAGAGAAAAAAAATG
1 AATAACTAAATAAAA-ACACTAAAATTAAAA-AGAAAAAAAATG
* *
2376212 AATAACTAAAATAAAAATACTAAAATTAAAAAGGAAAAAAATG
1 AATAACT-AAATAAAAACACTAAAATTAAAAAGAAAAAAAATG
2376255 AATAACTAAAT
1 AATAACTAAAT
2376266 TGAAATAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
42 4 0.08
43 18 0.36
44 20 0.40
45 8 0.16
ACGTcount: A:0.69, C:0.05, G:0.06, T:0.19
Consensus pattern (42 bp):
AATAACTAAATAAAAACACTAAAATTAAAAAGAAAAAAAATG
Found at i:2376264 original size:43 final size:45
Alignment explanation
Indices: 2376175--2376264 Score: 148
Period size: 43 Copynumber: 2.0 Consensus size: 45
2376165 ACAAATAAAT
2376175 AAATAAAATACACTAAAATTAAAAGAGAAAAAAAATGAATAACTA
1 AAATAAAATACACTAAAATTAAAAGAGAAAAAAAATGAATAACTA
* *
2376220 AAATAAAA-ATACTAAAATTAAAA-AGGAAAAAAATGAATAACTA
1 AAATAAAATACACTAAAATTAAAAGAGAAAAAAAATGAATAACTA
2376263 AA
1 AA
2376265 TTGAAATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 21 0.49
44 14 0.33
45 8 0.19
ACGTcount: A:0.70, C:0.06, G:0.07, T:0.18
Consensus pattern (45 bp):
AAATAAAATACACTAAAATTAAAAGAGAAAAAAAATGAATAACTA
Found at i:2376270 original size:22 final size:22
Alignment explanation
Indices: 2376203--2376275 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
2376193 TTAAAAGAGA
2376203 AAAAAAATGAATAACTAAAAT-
1 AAAAAAATGAATAACTAAAATG
* * *
2376224 AAAAATACT-AA-AATTAAAAAGG
1 AAAAA-AATGAATAACT-AAAATG
*
2376246 AAAAAAATGAATAACTAAATTG
1 AAAAAAATGAATAACTAAAATG
*
2376268 AAATAAAT
1 AAAAAAAT
2376276 AAAAATTGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
20 3 0.08
21 13 0.33
22 20 0.51
23 3 0.08
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (22 bp):
AAAAAAATGAATAACTAAAATG
Found at i:2378249 original size:106 final size:106
Alignment explanation
Indices: 2377948--2379466 Score: 2321
Period size: 106 Copynumber: 14.4 Consensus size: 106
2377938 GTTTCGATGT
* * *
2377948 CAATATCCTTCGCTGTGAAGTTGAAATTGCCT-TCGAAACTGGAAA---GTTTGTTGACAACCAA
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT-GAAATTGGAAAGTTGTTTGTTGACAACC-A
* * * * *
2378009 TC-GTCCCTTCGTTTGTGAAGTTGAACTTGTGCTGTCTCGAGTC
64 GCGGTCCCTTCG-TCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * * *
2378052 TAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T-GAAA--T-TTTGTTGACAATCAGC
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGC
* * * *
2378111 CGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTGG-GTC
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAGTC
* * * * *
2378152 CAAGATCCTTCGCTGAGAAGTCGAAATTGGCTCTGAAATTGGAAAGTTGTTTATTGACAACCAGC
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGC
2378217 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * *
2378258 CAATATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCAGC
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGC
2378323 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * *
2378364 CAATATCCTTCGCTGTGAAGTTGAAATCGGCTCTGAAATTGGGAAA-TTATTTGTTGACAACCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAAGTTGTTTGTTGACAACCAG
*
2378428 CGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* *
2378470 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGC
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGC
2378535 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
2378576 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GAGAAGTTGTTTGTTGACAGCCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTGTTGACAACCAG
2378640 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* *
2378682 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGC
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGC
2378747 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
66 GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
2378788 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCAGAAATT-GAGAAGTTGTTTGTTGACAACCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTGTTGACAACCAG
2378852 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * *
2378894 CAATATCCTTTGTTGTGAAGTTGAAATTGGCTCAGAAATT-GAGAAGTTATTTGTTGACAACCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTGTTGACAACCAG
2378958 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
2379000 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATTTGAGAAG-TGTTTGTTGACAACCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTGTTGACAACCAG
*
2379063 TGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
2379105 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATTTGAGAAG-TGTTTGTTGACAACCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTGTTGACAACCAG
*
2379168 TGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
2379210 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATTTGAGAAG-TGTTTGTTGACAACCAG
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGA-AAGTTGTTTGTTGACAACCAG
*
2379273 TGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
65 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* *
2379315 CAATATCCTTCGTTGTGAGGTTGAAATTGGCTCTGAATTTGAGAAA--TGTTTTGTTGACAACCA
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAAGTTG-TTTGTTGACAACCA
*
2379378 GCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
64 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
*
2379421 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAA
1 CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAA
2379467 TGTTTATTTA
Statistics
Matches: 1341, Mismatches: 54, Indels: 38
0.94 0.04 0.03
Matches are distributed among these distances:
100 56 0.04
101 28 0.02
102 2 0.00
103 6 0.00
104 31 0.02
105 318 0.24
106 893 0.67
107 7 0.01
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (106 bp):
CAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGC
GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
Found at i:2383228 original size:41 final size:41
Alignment explanation
Indices: 2383162--2383272 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
2383152 AAATAAAAAT
* * *
2383162 AAGAAAAGACAAATAAATAAATAAAAT-ACACCAAAATTAAA
1 AAGAAAA-AAAAATGAATAACTAAAATAACACCAAAATTAAA
* *
2383203 AGAGAAAAAAAAATGAATAACTAAAATAAAAAATACTAAAATTAAA
1 A-AGAAAAAAAAATGAATAACTAAAAT----AACACCAAAATTAAA
*
2383249 AAGGAAAAAAAATGAATAACTAAA
1 AAGAAAAAAAAATGAATAACTAAA
2383273 TTGAAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
41 17 0.29
42 6 0.10
45 22 0.38
46 13 0.22
ACGTcount: A:0.71, C:0.06, G:0.07, T:0.15
Consensus pattern (41 bp):
AAGAAAAAAAAATGAATAACTAAAATAACACCAAAATTAAA
Found at i:2383259 original size:45 final size:46
Alignment explanation
Indices: 2383180--2383272 Score: 143
Period size: 45 Copynumber: 2.0 Consensus size: 46
2383170 ACAAATAAAT
*
2383180 AAATAAAATACACCAAAATTAAAAGAGAAAAAAAAATGAATAACTA
1 AAATAAAAAACACCAAAATTAAAAGAGAAAAAAAAATGAATAACTA
* * *
2383226 AAATAAAAAATACTAAAATTAAAA-AGGAAAAAAAATGAATAACTA
1 AAATAAAAAACACCAAAATTAAAAGAGAAAAAAAAATGAATAACTA
2383271 AA
1 AA
2383273 TTGAAATAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 22 0.51
46 21 0.49
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.16
Consensus pattern (46 bp):
AAATAAAAAACACCAAAATTAAAAGAGAAAAAAAAATGAATAACTA
Found at i:2383288 original size:45 final size:45
Alignment explanation
Indices: 2383194--2383290 Score: 135
Period size: 45 Copynumber: 2.1 Consensus size: 45
2383184 AAAATACACC
2383194 AAAATTAAAAGAGAAAAAAAAATGAATAACTAAAATAAAAAATACT
1 AAAATTAAAAGAGAAAAAAAAATGAATAACTAAAATAAAAAATA-T
* *
2383240 AAAATTAAAA-AGGAAAAAAAATGAATAACTAAATTGAAATAAAT-T
1 AAAATTAAAAGAGAAAAAAAAATGAATAACTAAAAT-AAA-AAATAT
2383285 AAAATT
1 AAAATT
2383291 GATGGATTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
45 30 0.64
46 13 0.28
47 4 0.09
ACGTcount: A:0.69, C:0.03, G:0.07, T:0.21
Consensus pattern (45 bp):
AAAATTAAAAGAGAAAAAAAAATGAATAACTAAAATAAAAAATAT
Found at i:2385616 original size:118 final size:117
Alignment explanation
Indices: 2385470--2385695 Score: 312
Period size: 117 Copynumber: 1.9 Consensus size: 117
2385460 AGGAACAATT
* * * *
2385470 TTTTATATTTATAATTAAGAACCTTAATTTTTATAATTTTAT-AAATTTTTAATTTTTGACCATC
1 TTTTATATTTATAATTAAGAACCCTAATTTTTATAATTTCATAAAATGTTTAAGTTTT-ACCATC
*
2385534 TTTTTTTTCATTTCTCTTATTAATTCATTCAATTTTGAATTAAATTTAACTAAC
65 -TTTTTCTCATTTCTCTTATTAATTCATTCAATTTTGAATTAAATTTAACTAAC
* ** *
2385588 TTTTATATTTATAATT-AGTAACCCTAATTTTTTTAATTTCATAAAATGTTTGGGTTTTACCTTC
1 TTTTATATTTATAATTAAG-AACCCTAATTTTTATAATTTCATAAAATGTTTAAGTTTTACCATC
* *
2385652 TTTTTCTCATTTCTCTTATTTATTCATTTAATTTTGAATTAAAT
65 TTTTTCTCATTTCTCTTATTAATTCATTCAATTTTGAATTAAAT
2385696 GTAATAATTT
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
117 43 0.45
118 41 0.43
119 11 0.12
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (117 bp):
TTTTATATTTATAATTAAGAACCCTAATTTTTATAATTTCATAAAATGTTTAAGTTTTACCATCT
TTTTCTCATTTCTCTTATTAATTCATTCAATTTTGAATTAAATTTAACTAAC
Found at i:2391080 original size:46 final size:44
Alignment explanation
Indices: 2391029--2391138 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
2391019 ACAAATAAAT
* *
2391029 AAATAAAATACACTAAAATTAAAAGAGAAAAAAAAATGAATAAGTA
1 AAATAAAATAAACTAAAATTAAAA-AG-AAAAAAAATGAATAACTA
*
2391075 AAATAAAA-AATACTAAAATTAAAAAGGAAAAAAATGAATAACTA
1 AAATAAAATAA-ACTAAAATTAAAAAGAAAAAAAATGAATAACTA
* * *
2391119 AATTGAAATAAATTAAAATT
1 AAATAAAATAAACTAAAATT
2391139 GATGGATTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
44 30 0.54
45 5 0.09
46 21 0.38
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (44 bp):
AAATAAAATAAACTAAAATTAAAAAGAAAAAAAATGAATAACTA
Found at i:2393946 original size:34 final size:34
Alignment explanation
Indices: 2393900--2393964 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
2393890 GTTCATCGAA
* * *
2393900 AGTTAGATAGTTCGCTTGCTTCTTGGCTCTTGTC
1 AGTTAGACAGTTCGCTTGCTCCATGGCTCTTGTC
2393934 AGTTAGACAGTTCGCTTGCTCCATGGCTCTT
1 AGTTAGACAGTTCGCTTGCTCCATGGCTCTT
2393965 ATCAACAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (34 bp):
AGTTAGACAGTTCGCTTGCTCCATGGCTCTTGTC
Found at i:2395667 original size:28 final size:28
Alignment explanation
Indices: 2395614--2395667 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
2395604 TTATAAAGTA
* *
2395614 TAAGGTATAATTAAATACTAACTAATAC
1 TAAGGTATAATTAAAAAATAACTAATAC
*
2395642 TAAGGT-TAATTAATAAAATAATTAAT
1 TAAGGTATAATTAA-AAAATAACTAAT
2395668 CTAGGAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.52, C:0.06, G:0.07, T:0.35
Consensus pattern (28 bp):
TAAGGTATAATTAAAAAATAACTAATAC
Found at i:2396957 original size:40 final size:41
Alignment explanation
Indices: 2396913--2397023 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 41
2396903 TTGCGTTTTC
* *
2396913 CAAATTCGCAACGCGAATCTGT-AAAT-CGCAACACAGAAGT
1 CAAATTCGCAACGCGAAT-AGTCAAATCCGCAACACAAAAGT
*
2396953 CAAATTCGCAACGCG-ATAGTCAAATCCGTAACACAAAAGT
1 CAAATTCGCAACGCGAATAGTCAAATCCGCAACACAAAAGT
*
2396993 CAAATTCGCAACGCG-ATAGTC-AATTCGCAAC
1 CAAATTCGCAACGCGAATAGTCAAATCCGCAAC
2397024 GTGAATAGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.03
39 14 0.22
40 48 0.75
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.18
Consensus pattern (41 bp):
CAAATTCGCAACGCGAATAGTCAAATCCGCAACACAAAAGT
Found at i:2396961 original size:20 final size:20
Alignment explanation
Indices: 2396938--2397023 Score: 95
Period size: 20 Copynumber: 4.3 Consensus size: 20
2396928 AATCTGTAAA
2396938 TCGCAACACAGA-AGTCAAAT
1 TCGCAACAC-GATAGTCAAAT
*
2396958 TCGCAACGCGATAGTCAAAT
1 TCGCAACACGATAGTCAAAT
* * * *
2396978 CCGTAACACAAAAGTCAAAT
1 TCGCAACACGATAGTCAAAT
*
2396998 TCGCAACGCGATAGTC-AAT
1 TCGCAACACGATAGTCAAAT
2397017 TCGCAAC
1 TCGCAAC
2397024 GTGAATAGTA
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
19 12 0.22
20 42 0.78
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.17
Consensus pattern (20 bp):
TCGCAACACGATAGTCAAAT
Found at i:2397059 original size:21 final size:20
Alignment explanation
Indices: 2396998--2397085 Score: 124
Period size: 20 Copynumber: 4.4 Consensus size: 20
2396988 AAAGTCAAAT
* * *
2396998 TCGCAACGCG-ATAGTCAAT
1 TCGCAACGTGAATAGTAAAA
2397017 TCGCAACGTGAATAGTAAAA
1 TCGCAACGTGAATAGTAAAA
*
2397037 TCGCAACGTGAATAATAAAAA
1 TCGCAACGTGAATAGT-AAAA
2397058 TCGCAACGTGAATAGTAAAA
1 TCGCAACGTGAATAGTAAAA
2397078 TCGCAACG
1 TCGCAACG
2397086 AATCTATATG
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
19 9 0.15
20 34 0.55
21 19 0.31
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (20 bp):
TCGCAACGTGAATAGTAAAA
Found at i:2397467 original size:20 final size:20
Alignment explanation
Indices: 2397439--2397536 Score: 99
Period size: 20 Copynumber: 4.9 Consensus size: 20
2397429 TTTTTCAATT
*
2397439 TTTTA-AATTTGCGTTGCGA
1 TTTTACAATTCGCGTTGCGA
* *
2397458 TTTTCCAATTCGCATTGCGA
1 TTTTACAATTCGCGTTGCGA
**
2397478 TTTTTTAATTCGCGTTGCGA
1 TTTTACAATTCGCGTTGCGA
* *
2397498 TTTTACTATTCACGTTGCGA
1 TTTTACAATTCGCGTTGCGA
* *
2397518 TTTTTACTATTCACGTTGC
1 -TTTTACAATTCGCGTTGC
2397537 AAAATTAGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.06
20 45 0.67
21 18 0.27
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.47
Consensus pattern (20 bp):
TTTTACAATTCGCGTTGCGA
Found at i:2397482 original size:40 final size:40
Alignment explanation
Indices: 2397438--2397523 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
2397428 ATTTTTCAAT
* * *
2397438 TTTTTAAATTTGCGTTGCGATTTTCCAATTCGCATTGCGA
1 TTTTTAAATTCGCGTTGCGATTTTACAATTCACATTGCGA
* * *
2397478 TTTTTTAATTCGCGTTGCGATTTTACTATTCACGTTGCGA
1 TTTTTAAATTCGCGTTGCGATTTTACAATTCACATTGCGA
2397518 TTTTTA
1 TTTTTA
2397524 CTATTCACGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (40 bp):
TTTTTAAATTCGCGTTGCGATTTTACAATTCACATTGCGA
Found at i:2402600 original size:75 final size:74
Alignment explanation
Indices: 2402478--2402631 Score: 299
Period size: 75 Copynumber: 2.1 Consensus size: 74
2402468 GGAAAAGTGT
2402478 GGTAAAATTCGAAGTTAATAAGGGAAATCTGGGTTAGAGAATCGGTACTGGAAGAACAATACCAA
1 GGTAAAATTCGAAGTTAATAAGGGAAATCTGGGTTAGAGAATCGGTACTGGAAGAACAATACCAA
2402543 TACTATAAG
66 TACTATAAG
2402552 GGTAAAATTCGAAGTTAAATAAGGGAAATCTGGGTTAGAGAATCGGTACTGGAAGAACAATACCA
1 GGTAAAATTCGAAGTT-AATAAGGGAAATCTGGGTTAGAGAATCGGTACTGGAAGAACAATACCA
2402617 ATACTATAAG
65 ATACTATAAG
2402627 GGTAA
1 GGTAA
2402632 TTTATAGGAA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 16 0.20
75 63 0.80
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (74 bp):
GGTAAAATTCGAAGTTAATAAGGGAAATCTGGGTTAGAGAATCGGTACTGGAAGAACAATACCAA
TACTATAAG
Found at i:2403429 original size:23 final size:24
Alignment explanation
Indices: 2403356--2403431 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
2403346 TTCTACGGTC
* * *
2403356 CTTCGGGATAAATTCTACTTGGTA
1 CTTCGGGACAAATTCTACGTGGCA
* * * *
2403380 TTTCGGGACAAATTATACGCGTC-
1 CTTCGGGACAAATTCTACGTGGCA
2403403 CTTC-GGACAAATTCTACGTGGCA
1 CTTCGGGACAAATTCTACGTGGCA
2403426 CTTCGG
1 CTTCGG
2403432 TGCAATTTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
22 15 0.38
23 7 0.18
24 17 0.44
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (24 bp):
CTTCGGGACAAATTCTACGTGGCA
Found at i:2409563 original size:20 final size:21
Alignment explanation
Indices: 2409538--2409585 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
2409528 GAAGCAGTGA
* *
2409538 CGATACTGATGTGG-AGGTAT
1 CGATACTGAAGAGGAAGGTAT
*
2409558 CGATAC-CAAGAGGAAGGTAT
1 CGATACTGAAGAGGAAGGTAT
2409578 CGATACTG
1 CGATACTG
2409586 TAACTGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (21 bp):
CGATACTGAAGAGGAAGGTAT
Found at i:2411173 original size:17 final size:17
Alignment explanation
Indices: 2411151--2411183 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2411141 CCCAAAAAAC
*
2411151 TAAAACTAAATGCTTGA
1 TAAAACTAAACGCTTGA
2411168 TAAAACTAAACGCTTG
1 TAAAACTAAACGCTTG
2411184 TGCTGCTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.27
Consensus pattern (17 bp):
TAAAACTAAACGCTTGA
Found at i:2413147 original size:17 final size:18
Alignment explanation
Indices: 2413125--2413165 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
2413115 CATATTTGTC
* *
2413125 ATTTTAA-TAAAATATTA
1 ATTTTAATTAAAACAATA
2413142 ATTTTAATTAAAACAATA
1 ATTTTAATTAAAACAATA
2413160 ATTTTA
1 ATTTTA
2413166 CGGTATGCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTTAATTAAAACAATA
Found at i:2417610 original size:22 final size:23
Alignment explanation
Indices: 2417580--2417625 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
2417570 AAACCCCATT
* *
2417580 AGTATAAATGTTATCGCAG-TTA
1 AGTAAAAATGCTATCGCAGCTTA
*
2417602 AGTAAAAATGCTGTCGCAGCTTA
1 AGTAAAAATGCTATCGCAGCTTA
2417625 A
1 A
2417626 AAAGGGTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (23 bp):
AGTAAAAATGCTATCGCAGCTTA
Found at i:2418376 original size:20 final size:20
Alignment explanation
Indices: 2418369--2418479 Score: 159
Period size: 20 Copynumber: 5.5 Consensus size: 20
2418359 CGTGAATAGT
* * * *
2418369 AAAATCGTAACGTGAATAGT
1 AAAATCGCAACGCGAATTGG
*
2418389 AAAATTGCAACGCGAATTGG
1 AAAATCGCAACGCGAATTGG
2418409 AAAATCGCAACGCGAATTGG
1 AAAATCGCAACGCGAATTGG
2418429 AAAATCGCAACGCGAATTGG
1 AAAATCGCAACGCGAATTGG
*
2418449 AAAATCGCAACGCGAATTTAG
1 AAAATCGCAACGCGAA-TTGG
2418470 AAAATCGCAA
1 AAAATCGCAA
2418480 AATCGCGTTG
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
20 70 0.84
21 13 0.16
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (20 bp):
AAAATCGCAACGCGAATTGG
Found at i:2418918 original size:20 final size:21
Alignment explanation
Indices: 2418829--2418985 Score: 155
Period size: 20 Copynumber: 7.8 Consensus size: 21
2418819 CATATAGATT
* *
2418829 CGTTGCG-ATTTTACTATTCA
1 CGTTGCGAATTTGACTATTCG
* *
2418849 CGTTGC-AATTTTACTATTCA
1 CGTTGCGAATTTGACTATTCG
* * * *
2418869 CATTGCGATTTTTACTATTCA
1 CGTTGCGAATTTGACTATTCG
2418890 CGTTGCGAATTTGACT-TTCG
1 CGTTGCGAATTTGACTATTCG
*
2418910 CGTTGCGAATTTGACTCTT-G
1 CGTTGCGAATTTGACTATTCG
*
2418930 TGTTGCGAATTTGACTA-TCG
1 CGTTGCGAATTTGACTATTCG
**
2418950 TATTGCGAATTTGACTA-TCG
1 CGTTGCGAATTTGACTATTCG
*
2418970 CGTTGTGAATTTGACT
1 CGTTGCGAATTTGACT
2418986 TCTGTGTTGC
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
19 1 0.01
20 92 0.76
21 28 0.23
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (21 bp):
CGTTGCGAATTTGACTATTCG
Found at i:2418994 original size:20 final size:20
Alignment explanation
Indices: 2418891--2418997 Score: 114
Period size: 20 Copynumber: 5.3 Consensus size: 20
2418881 TACTATTCAC
*
2418891 GTTGCGAATTTGACTT-TCGC
1 GTTGCGAATTTGACTTCT-GT
2418911 GTTGCGAATTTGAC-TCTTGT
1 GTTGCGAATTTGACTTC-TGT
2418931 GTTGCGAATTTGACTATC-GT
1 GTTGCGAATTTGACT-TCTGT
* *
2418951 ATTGCGAATTTGACTATC-GC
1 GTTGCGAATTTGACT-TCTGT
*
2418971 GTTGTGAATTTGACTTCTGT
1 GTTGCGAATTTGACTTCTGT
2418991 GTTGCGA
1 GTTGCGA
2418998 TTTATAGGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
19 3 0.04
20 69 0.92
21 1 0.01
22 2 0.03
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (20 bp):
GTTGCGAATTTGACTTCTGT
Found at i:2419293 original size:20 final size:20
Alignment explanation
Indices: 2419268--2419364 Score: 106
Period size: 20 Copynumber: 4.8 Consensus size: 20
2419258 TATATAGATT
*
2419268 CGTTGCG-ATTTTACTATTCA
1 CGTTGCGAATTTGACT-TTCA
*
2419288 CGTTGCGAATTTGACTTTCG
1 CGTTGCGAATTTGACTTTCA
* **
2419308 CGTTGCAAATTTGACTTTTG
1 CGTTGCGAATTTGACTTTCA
* * *
2419328 TGTTGCGAATTTGACTATCG
1 CGTTGCGAATTTGACTTTCA
2419348 CGTTGCGAATTTGACTT
1 CGTTGCGAATTTGACTT
2419365 CTGTGTTGCG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
20 59 0.89
21 7 0.11
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGAATTTGACTTTCA
Found at i:2419370 original size:40 final size:40
Alignment explanation
Indices: 2419289--2419375 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 40
2419279 TACTATTCAC
* *
2419289 GTTGCGAATTTGACTTTCGCGTTGCAAATTTGACTTTTGT
1 GTTGCGAATTTGACTATCGCGTTGCAAATTTGACTTCTGT
*
2419329 GTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGT
1 GTTGCGAATTTGACTATCGCGTTGCAAATTTGACTTCTGT
2419369 GTTGCGA
1 GTTGCGA
2419376 TTTACAGATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.17, C:0.16, G:0.25, T:0.41
Consensus pattern (40 bp):
GTTGCGAATTTGACTATCGCGTTGCAAATTTGACTTCTGT
Found at i:2419372 original size:20 final size:20
Alignment explanation
Indices: 2419288--2419375 Score: 108
Period size: 20 Copynumber: 4.4 Consensus size: 20
2419278 TTACTATTCA
2419288 CGTTGCGAATTTGACTT-TCG
1 CGTTGCGAATTTGACTTCT-G
* *
2419308 CGTTGCAAATTTGACTTTTG
1 CGTTGCGAATTTGACTTCTG
*
2419328 TGTTGCGAATTTGACTATC-G
1 CGTTGCGAATTTGACT-TCTG
2419348 CGTTGCGAATTTGACTTCTG
1 CGTTGCGAATTTGACTTCTG
*
2419368 TGTTGCGA
1 CGTTGCGA
2419376 TTTACAGATT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.03
20 55 0.93
21 2 0.03
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.41
Consensus pattern (20 bp):
CGTTGCGAATTTGACTTCTG
Found at i:2419468 original size:20 final size:20
Alignment explanation
Indices: 2419425--2419472 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
2419415 ACATATTCGT
*
2419425 GTTGCGAAATTGGAAACTGG
1 GTTGCGAAATTGGAAACTGC
***
2419445 GTTGCGAAATTGGAGTTTGC
1 GTTGCGAAATTGGAAACTGC
2419465 GTTGCGAA
1 GTTGCGAA
2419473 TTTGTTGGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.35, T:0.29
Consensus pattern (20 bp):
GTTGCGAAATTGGAAACTGC
Found at i:2420971 original size:30 final size:30
Alignment explanation
Indices: 2420945--2421033 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
2420935 TAGTTTTTAT
2420945 TATTTTAATCCTTTAACTTTCTGTTTTAGC
1 TATTTTAATCCTTTAACTTTCTGTTTTAGC
* * * *
2420975 TATTTTAGTCCTTTAAGTTTCT-ATATATGC
1 TATTTTAATCCTTTAACTTTCTGTTTTA-GC
** *
2421005 TATTTTGGTCCTTTAACTTTATGTATTTA
1 TATTTTAATCCTTTAACTTTCTGT-TTTA
2421034 TTGTTTAGCC
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
29 3 0.06
30 41 0.87
32 3 0.06
ACGTcount: A:0.21, C:0.13, G:0.09, T:0.56
Consensus pattern (30 bp):
TATTTTAATCCTTTAACTTTCTGTTTTAGC
Done.