Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6287495
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 33
Found at i:605127 original size:42 final size:42
Alignment explanation
Indices: 605060--605139 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
605050 TGATGACAGT
* * *
605060 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * *
605102 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
605140 CAGGCGAGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:605608 original size:14 final size:14
Alignment explanation
Indices: 605589--605644 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
605579 GCGAAATGAA
*
605589 AATCGCAACGACAG
1 AATCGCAACGAAAG
605603 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
605620 AAATCGCAACGAAAG
1 -AATCGCAACGAAAG
605635 AATCGCAACG
1 AATCGCAACG
605645 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 18 0.49
15 1 0.03
16 9 0.24
17 1 0.03
18 8 0.22
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:605629 original size:32 final size:33
Alignment explanation
Indices: 605570--605661 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 33
605560 GCGAAACCAA
*
605570 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
605603 AATCGCAATGCGAAATG-AAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
605635 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
605662 TGCGATTTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.22, G:0.21, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:605659 original size:19 final size:19
Alignment explanation
Indices: 605533--605666 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
605523 TAGTTTACTT
* *
605533 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
605553 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
605572 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
605591 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
605605 TCGCAATGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
605623 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
605637 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
605656 TCGCAATGCGA
1 TCGCAACGCGA
605667 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 19
0.78 0.06 0.15
Matches are distributed among these distances:
14 16 0.16
15 1 0.01
16 15 0.15
17 6 0.06
18 8 0.08
19 39 0.40
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:605684 original size:19 final size:18
Alignment explanation
Indices: 605662--605790 Score: 94
Period size: 19 Copynumber: 7.3 Consensus size: 18
605652 AAAATCGCAA
605662 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-GTTTCGCGT
*
605681 TGCGATCTTG--T--CGT
1 TGCGATTTTGTTTCGCGT
* *
605695 TGCGATTTTCATTTCGCAT
1 TGCGATTTT-GTTTCGCGT
*
605714 TGCGATTCTG--T--CGT
1 TGCGATTTTGTTTCGCGT
*
605728 TGCGATTTTCATTTCGCGT
1 TGCGATTTT-GTTTCGCGT
605747 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-GTTTCGCGT
*
605766 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT--GTTTCGCGT
605786 TGCGA
1 TGCGA
605791 AAGTAAACTA
Statistics
Matches: 86, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
14 21 0.24
16 2 0.02
17 2 0.02
18 1 0.01
19 47 0.55
20 13 0.15
ACGTcount: A:0.10, C:0.18, G:0.26, T:0.46
Consensus pattern (18 bp):
TGCGATTTTGTTTCGCGT
Found at i:605710 original size:33 final size:33
Alignment explanation
Indices: 605662--605753 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
605652 AAAATCGCAA
**
605662 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTC-TGTCGT
*
605695 TGCGATTTTCATTTCGCATTGCGATTCTGTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTGTCGT
605728 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTCATTTCGCGTTGCGATT
605754 TTGGTTTCGC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 52 0.96
34 2 0.04
ACGTcount: A:0.10, C:0.20, G:0.25, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTGTCGT
Found at i:605993 original size:93 final size:93
Alignment explanation
Indices: 605834--606212 Score: 726
Period size: 93 Copynumber: 4.1 Consensus size: 93
605824 TTGAATGGAT
605834 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
605899 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
605927 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
605992 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
606020 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTT--CAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
606083 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
606111 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
606176 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
606204 AAATTTACT
1 AAATTTACT
606213 AAGCAATCTA
Statistics
Matches: 281, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
91 90 0.32
93 191 0.68
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:606145 original size:184 final size:185
Alignment explanation
Indices: 605834--606212 Score: 724
Period size: 184 Copynumber: 2.0 Consensus size: 185
605824 TTGAATGGAT
605834 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTT-ACAGTGTTAAAGAATACAC
605899 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
65 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
605964 TACTATTTCACAGTGTTATAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
130 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
606020 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTT-CAGTGTTAAAGAATACACA
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTACAGTGTTAAAGAATACACA
606084 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
66 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
*
606149 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAT
131 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
606204 AAATTTACT
1 AAATTTACT
606213 AAGCAATCTA
Statistics
Matches: 191, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
184 146 0.76
186 45 0.24
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTACAGTGTTAAAGAATACACA
GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:607930 original size:14 final size:14
Alignment explanation
Indices: 607911--608000 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
607901 TTGAAATGAA
607911 AATCGCAACGAGAG
1 AATCGCAACGAGAG
607925 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
607942 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
607958 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
607977 AATCGCAACGAGAG
1 AATCGCAACGAGAG
607991 AATCGCAACG
1 AATCGCAACG
608001 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:607948 original size:33 final size:33
Alignment explanation
Indices: 607903--608017 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
607893 TCTTTTGGTT
607903 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
607936 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
607969 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
608002 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
608018 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:607949 original size:19 final size:18
Alignment explanation
Indices: 607910--608022 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
607900 GTTGAAATGA
607910 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
607925 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
607942 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
607958 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
607975 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
607991 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
608008 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
608023 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:608053 original size:14 final size:14
Alignment explanation
Indices: 608034--608087 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
608024 TTTGGTTTCG
608034 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
608048 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
608067 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
608081 CGTTGCG
1 CGTTGCG
608088 CTTTTCATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
16 3 0.09
17 3 0.09
19 10 0.30
ACGTcount: A:0.07, C:0.26, G:0.24, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:608066 original size:33 final size:33
Alignment explanation
Indices: 608018--608098 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
608008 AAAATCGCAA
**
608018 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
608051 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
608084 TGCGCTTTTCATTTC
1 TGCGATTTTCATTTC
608099 TCTCGTTGCG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.07, C:0.23, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:608134 original size:41 final size:41
Alignment explanation
Indices: 608074--608151 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
608064 TCGCGTTGCG
* *
608074 ATTCTCTCGTTGCGCTTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
608115 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
608152 TCTTCTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.12, C:0.27, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:608150 original size:21 final size:21
Alignment explanation
Indices: 608075--608150 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
608065 CGCGTTGCGA
*
608075 TTCTCTCGTTGCGCTTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
608096 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
608116 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
608137 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
608151 CTCTTCTGCA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.37
21 29 0.63
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:608268 original size:31 final size:32
Alignment explanation
Indices: 608233--608299 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
608223 ACTAACTTGA
* * *
608233 AAATCGGAACGAGAGAATAG-CACGCGAAATG
1 AAATCGCAACGACAGAATAGTAACGCGAAATG
*
608264 AAATCGCAACGACAGAATCGTAACGCGAAATG
1 AAATCGCAACGACAGAATAGTAACGCGAAATG
608296 AAAT
1 AAAT
608300 TTAAGTGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 17 0.55
32 14 0.45
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (32 bp):
AAATCGCAACGACAGAATAGTAACGCGAAATG
Found at i:608529 original size:22 final size:22
Alignment explanation
Indices: 608477--608531 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
608467 TGGTTGTGAG
**
608477 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
608499 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
608521 GGATTTCTTCG
1 GGATTTCTTCG
608532 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:608702 original size:20 final size:20
Alignment explanation
Indices: 608677--608870 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
608667 CTTTAAATAT
608677 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
608697 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
608719 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
608738 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
608758 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
608778 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
608798 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
608818 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
608838 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
608858 CGCGTTGCGATTT
1 CGCGTTGCGATTT
608871 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:608864 original size:60 final size:60
Alignment explanation
Indices: 608677--608870 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
608667 CTTTAAATAT
**
608677 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
608738 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
608798 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
608858 CGCGTTGCGATTT
1 CGCGTTGCGATTT
608871 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:608887 original size:21 final size:21
Alignment explanation
Indices: 608857--608939 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
608847 ATTTTCATAT
*
608857 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
608878 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
608899 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
608920 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
608940 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:608930 original size:42 final size:43
Alignment explanation
Indices: 608837--608935 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
608827 ATTTATGTGT
* *
608837 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
608878 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
608920 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
608936 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:610411 original size:18 final size:19
Alignment explanation
Indices: 610385--610436 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
610375 TTTAATTTTA
610385 TTTTA-TTTT-CTTTCAA-C
1 TTTTATTTTTACTTT-AAGC
*
610402 TTTTATTTTTACTTTAAGT
1 TTTTATTTTTACTTTAAGC
610421 TTTTATTTTTA-TTTAA
1 TTTTATTTTTACTTTAA
610437 AAAAAGTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 5 0.16
18 11 0.35
19 15 0.48
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTATTTTTACTTTAAGC
Found at i:613319 original size:39 final size:38
Alignment explanation
Indices: 613226--613333 Score: 108
Period size: 39 Copynumber: 2.8 Consensus size: 38
613216 AAGACTCTAC
* *
613226 GACTGCATGGCGTCTTCAGGTAAATAAAAAAACTCCAT
1 GACTGCATGGCGTCTTCAGGCAAATAAAAAAACTCCAA
*** * * *
613264 GACTGCATGATATCTTCAGGCAAATGGACAAGACTCCAA
1 GACTGCATGGCGTCTTCAGGCAAAT-AAAAAAACTCCAA
* * *
613303 GAGTGCATGGCGTCTTCAGACTAATAAAAAA
1 GACTGCATGGCGTCTTCAGGCAAATAAAAAA
613334 CCCTAGTTCA
Statistics
Matches: 52, Mismatches: 17, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
38 24 0.46
39 28 0.54
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (38 bp):
GACTGCATGGCGTCTTCAGGCAAATAAAAAAACTCCAA
Found at i:614102 original size:13 final size:13
Alignment explanation
Indices: 614072--614116 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
614062 CAAAAGACAA
* *
614072 AAAAAGATATCATA
1 AAAAAGA-ATTATT
614086 AAAAAGAATTATT
1 AAAAAGAATTATT
614099 AAAAAGAATTATT
1 AAAAAGAATTATT
614112 AAAAA
1 AAAAA
614117 TTAAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 22 0.76
14 7 0.24
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (13 bp):
AAAAAGAATTATT
Found at i:616025 original size:64 final size:65
Alignment explanation
Indices: 615957--616112 Score: 245
Period size: 62 Copynumber: 2.5 Consensus size: 65
615947 TTATATGATA
*
615957 TAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTT-AAAAATTAATAT
1 TAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATATATTTAAAAAATTAATAT
616021 TAAAATT-AATATCTATAATATAATATT-AAAAATTAATATTTAATATATTTAAAAAAATTAATA
1 TAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATATATTT-AAAAAATTAATA
616084 T
65 T
616085 TAAAATTAAA-ATC-A-AATATAATA-TAAAA
1 TAAAATTAAATATCTATAATATAATATTAAAA
616113 TTAAATATAA
Statistics
Matches: 87, Mismatches: 1, Indels: 10
0.89 0.01 0.10
Matches are distributed among these distances:
61 1 0.01
62 34 0.39
63 21 0.24
64 29 0.33
65 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (65 bp):
TAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATATATTTAAAAAATTAATAT
Found at i:616056 original size:39 final size:36
Alignment explanation
Indices: 615978--616060 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 36
615968 ATCTATAATA
*
615978 TAATATTAAAAAATTAATATTTAATTTATTTAAAAAT
1 TAATATT-AAAAATTAATATTTAATTAATTTAAAAAT
616015 TAATATT-AAAATTAATATCTATAATATAATATTAAAAAT
1 TAATATTAAAAATTAATAT-T-TAAT-TAAT-TTAAAAAT
616054 TAATATT
1 TAATATT
616061 TAATATATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
35 11 0.27
36 1 0.02
37 11 0.27
38 3 0.07
39 15 0.37
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (36 bp):
TAATATTAAAAATTAATATTTAATTAATTTAAAAAT
Found at i:616076 original size:25 final size:26
Alignment explanation
Indices: 616015--616086 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 26
616005 ATTTAAAAAT
616015 TAATATT-AAAATTAATATCTATAATA
1 TAATATTAAAAATTAATAT-TATAATA
616041 TAATATTAAAAATTAATATT-TAATA
1 TAATATTAAAAATTAATATTATAATA
616066 T-AT-TTAAAAAAATTAATATTA
1 TAATATT--AAAAATTAATATTA
616087 AAATTAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
23 2 0.05
24 2 0.05
25 19 0.45
26 8 0.19
27 11 0.26
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (26 bp):
TAATATTAAAAATTAATATTATAATA
Found at i:616119 original size:12 final size:12
Alignment explanation
Indices: 616074--616124 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
616064 TATATTTAAA
616074 AAAATT-AATATT
1 AAAATTAAATA-T
616086 AAAATTAAA-AT
1 AAAATTAAATAT
*
616097 CAAA-TATAATAT
1 AAAATTA-AATAT
616109 AAAATTAAATAT
1 AAAATTAAATAT
616121 AAAA
1 AAAA
616125 CCTCTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 2 0.06
11 6 0.18
12 21 0.64
13 4 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAAATAT
Found at i:622205 original size:12 final size:12
Alignment explanation
Indices: 622184--622214 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
622174 ACTCTTAATT
*
622184 ATTTAATTTAAA
1 ATTTATTTTAAA
622196 ATTTATTTTAAA
1 ATTTATTTTAAA
622208 ATTTATT
1 ATTTATT
622215 AAATATGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTTATTTTAAA
Found at i:623951 original size:22 final size:21
Alignment explanation
Indices: 623920--623975 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
623910 CACAAGAAAA
*
623920 CTAAGAAGAAAAAGAATATTTT
1 CTAAGGAGAAAAA-AATATTTT
623942 CTAAGGAG-AAAAAATATTTT
1 CTAAGGAGAAAAAAATATTTT
623962 -TCAA-GAGAAAAAAA
1 CT-AAGGAGAAAAAAA
623976 AATTCTTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
19 4 0.13
20 16 0.52
21 4 0.13
22 7 0.23
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.23
Consensus pattern (21 bp):
CTAAGGAGAAAAAAATATTTT
Found at i:623971 original size:19 final size:19
Alignment explanation
Indices: 623925--623974 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
623915 GAAAACTAAG
623925 AAGA-AAAAGAATATTTTCT
1 AAGAGAAAA-AATATTTTCT
623944 AAGGAGAAAAAATATTTT-T
1 AA-GAGAAAAAATATTTTCT
623963 CAAGAGAAAAAA
1 -AAGAGAAAAAA
623975 AAATTCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 12 0.43
20 12 0.43
21 4 0.14
ACGTcount: A:0.58, C:0.04, G:0.14, T:0.24
Consensus pattern (19 bp):
AAGAGAAAAAATATTTTCT
Found at i:623975 original size:20 final size:20
Alignment explanation
Indices: 623926--623985 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
623916 AAAACTAAGA
623926 AGAAAAAGAATA-TTTTCTAAG
1 AGAAAAA-AATATTTTTC-AAG
623947 -GAGAAAAAATATTTTTCAAG
1 AGA-AAAAAATATTTTTCAAG
* *
623967 AGAAAAAAAAATTCTTCAA
1 AGAAAAAAATATTTTTCAA
623986 TTCTAAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 23 0.68
21 11 0.32
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.27
Consensus pattern (20 bp):
AGAAAAAAATATTTTTCAAG
Found at i:624472 original size:189 final size:191
Alignment explanation
Indices: 624094--624504 Score: 528
Period size: 189 Copynumber: 2.2 Consensus size: 191
624084 AACATATAAG
* * * *
624094 AATATATTTTAATTTGAAATATTCAAAAGATAAAACTCTTTTTACCATTCAAACTTAAATATATA
1 AATATATTTTAATTTGCAATAGTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAACATATA
* **
624159 TTATTTTAATTTAAAATATACAAAAAATATATAATTATCTTTAATATTCAAAGTTAAAAAGGTAA
66 TTATTTTAATTTAAAATATACAAAAAATATATAATTATCTTTAATATTCAAAATTAAAAAAATAA
* * * * *
624224 CAAATACCTTTTCAAATTAACATATTCAAAGAGTAATTATCCTATAAATATTTAAATTAAA
131 CAAATAACTTTTCAAATTAACATATTAAAAAAATAATTATCCTATAAATATTCAAATTAAA
* * * *
624285 TAATATA-TTTAATTTGCAATGGTCAAAAGGT-AAACTCCTTTTACTATT-ATACTTAAACATAT
1 -AATATATTTTAATTTGCAATAGTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAACATAT
* * *
624347 ATTATTTTAATTTGAAATATAC-AAAAGTATATAATTATCTTTTAATATTTAAAATTAAAAAAAT
65 ATTATTTTAATTTAAAATATACAAAAAATATATAATTATC-TTTAATATTCAAAATTAAAAAAAT
* * *
624411 AACAAATAACTTTTTAAATTTACTTATTAAAAAAATAATTATCCTACT-AATATTCAAATTAAA
129 AACAAATAACTTTTCAAATTAACATATTAAAAAAATAATTATCCTA-TAAATATTCAAATTAAA
*
624474 AAT-TAGCTTTTAATTTACAATAGTCAAAAGA
1 AATATA--TTTTAATTTGCAATAGTCAAAAGA
624505 CTATGAATTT
Statistics
Matches: 189, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
187 2 0.01
188 19 0.10
189 106 0.56
190 36 0.19
191 20 0.11
192 6 0.03
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.39
Consensus pattern (191 bp):
AATATATTTTAATTTGCAATAGTCAAAAGATAAAACTCCTTTTACCATTCAAACTTAAACATATA
TTATTTTAATTTAAAATATACAAAAAATATATAATTATCTTTAATATTCAAAATTAAAAAAATAA
CAAATAACTTTTCAAATTAACATATTAAAAAAATAATTATCCTATAAATATTCAAATTAAA
Found at i:626006 original size:14 final size:14
Alignment explanation
Indices: 625984--626017 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
625974 TATTCTTACT
625984 CTCTCCGGCTTTGG
1 CTCTCCGGCTTTGG
*
625998 CTCTTCGGCTTTGG
1 CTCTCCGGCTTTGG
*
626012 CACTCC
1 CTCTCC
626018 TACTTTACCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.03, C:0.38, G:0.24, T:0.35
Consensus pattern (14 bp):
CTCTCCGGCTTTGG
Found at i:629912 original size:2 final size:2
Alignment explanation
Indices: 629905--629931 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
629895 CTCCGATCTT
629905 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
629932 GGAAACCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:635021 original size:128 final size:128
Alignment explanation
Indices: 634791--635424 Score: 705
Period size: 125 Copynumber: 5.0 Consensus size: 128
634781 AAGTTGCGAT
* * * *
634791 ATGTTGTGGCACGGCTGAACCCACATTAGGTTGAGATGACAAGATTCAGAAGAAGAAGAAGGCAT
1 ATGTTGGGGCACGACTGAACCCACATCAGGTTGAAATGACAAGATTCAGAAGAAGAAGAAGGCAT
* * *
634856 GAAGAATAAGCCTTACAATCTGAGGTGATGGGACATTTTGAAGGCTCGTACCAGTATAAGATA
66 GAAGAATGAGCCTTACAATCTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
* * * * *
634919 ATGTTGGGGCATGACTGAACCCACATTAGGTTGAGATGATAAAATTCAGAAGAAGAAGAAGGCAT
1 ATGTTGGGGCACGACTGAACCCACATCAGGTTGAAATGACAAGATTCAGAAGAAGAAGAAGGCAT
* * * *
634984 GAAGAATGAGCCTTACAAACTAAGGAGATGGGGCATTTTGAAGGCCCGTACTAGTATAAGATA
66 GAAGAATGAGCCTTACAATCTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
* * * ** * *
635047 ATATTGGGGCATGACTGAACCCCCATCATTTTGAAATGACAAGA-TC--CAGACGAAGAAGGCAT
1 ATGTTGGGGCACGACTGAACCCACATCAGGTTGAAATGACAAGATTCAGAAGAAGAAGAAGGCAT
* * * * * ** *
635109 TAAGAATGAGCCTTACAATTTGAGGTGTTGGGGTATTTTGAAGACCCGTACCTTTATAAGCTA
66 GAAGAATGAGCCTTACAATCTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
* * ** *
635172 ATGTTGGGGCACGATTGAACCCCCATCATTTTGAAATGACAAGATTCAG-A-CA-AAGAAGGCAT
1 ATGTTGGGGCACGACTGAACCCACATCAGGTTGAAATGACAAGATTCAGAAGAAGAAGAAGGCAT
* * *
635234 CAAGAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATGAGATA
66 GAAGAATGAGCCTTACAATCTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
* * * * * **
635297 ATGTTGGGGCGCGACTGAACCCACCTCATGATGAAATTACAAGATTC---AGACCAAGAAGGCAT
1 ATGTTGGGGCACGACTGAACCCACATCAGGTTGAAATGACAAGATTCAGAAGAAGAAGAAGGCA-
* * * * * *
635359 TG-AGAATGAGCCTTATAATTTGAGAT-ATTGAGGCATTTTGAAGGCCCGTACCAGAATAAAATA
65 TGAAGAATGAGCCTTACAATCTGAGGTGA-TGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
635422 ATG
1 ATG
635425 CTGCGACATT
Statistics
Matches: 436, Mismatches: 63, Indels: 17
0.84 0.12 0.03
Matches are distributed among these distances:
123 1 0.00
124 1 0.00
125 276 0.63
126 3 0.01
127 3 0.01
128 152 0.35
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (128 bp):
ATGTTGGGGCACGACTGAACCCACATCAGGTTGAAATGACAAGATTCAGAAGAAGAAGAAGGCAT
GAAGAATGAGCCTTACAATCTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
Found at i:636551 original size:11 final size:11
Alignment explanation
Indices: 636537--636572 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
636527 CATCAGATGT
*
636537 AAAAAA-AAAC
1 AAAAAACAAAA
636547 AAAAAACAAAA
1 AAAAAACAAAA
636558 AAAAAACAAAA
1 AAAAAACAAAA
636569 AAAA
1 AAAA
636573 CAAAGATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 6 0.25
11 18 0.75
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAACAAAA
Found at i:636552 original size:7 final size:7
Alignment explanation
Indices: 636540--636576 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
636530 CAGATGTAAA
636540 AAAAAAC
1 AAAAAAC
636547 AAAAAAC
1 AAAAAAC
636554 AAAAAA-
1 AAAAAAC
636560 AAAACAA-
1 AAAA-AAC
636567 AAAAAAC
1 AAAAAAC
636574 AAA
1 AAA
636577 GATACTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:636552 original size:9 final size:9
Alignment explanation
Indices: 636538--636576 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
636528 ATCAGATGTA
636538 AAAAAAAAC
1 AAAAAAAAC
636547 AAAAAACAA-
1 AAAAAA-AAC
636556 AAAAAAAAC
1 AAAAAAAAC
636565 AAAAAAAAC
1 AAAAAAAAC
636574 AAA
1 AAA
636577 GATACTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.07
9 24 0.86
10 2 0.07
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:636690 original size:36 final size:36
Alignment explanation
Indices: 636650--636839 Score: 237
Period size: 36 Copynumber: 5.3 Consensus size: 36
636640 AAGTCAATCT
**
636650 TAAGCCTTCACCAAAGAGA-AGTGAAGCAAACCATCC
1 TAAGCCTTCACCGGAGA-ATAGTGAAGCAAACCATCC
636686 TAAGCCTTCACCGGAGAATAGTGAAGCAAACCAT-C
1 TAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCC
* *
636721 TGAAGCCTTCACCGGAGAATAGTGAAGCAATCAAT-C
1 T-AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCC
*
636757 TGAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCA
1 T-AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCC
* * *
636794 TAAGTCTTCACC--AGAGTAGTGAAGCAAACCATCT
1 TAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCC
*
636828 TAAGTCTTCACC
1 TAAGCCTTCACC
636840 AAAAAGTAGT
Statistics
Matches: 141, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
34 32 0.23
35 3 0.02
36 105 0.74
37 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (36 bp):
TAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCC
Found at i:636855 original size:36 final size:36
Alignment explanation
Indices: 636646--636873 Score: 232
Period size: 36 Copynumber: 6.4 Consensus size: 36
636636 GAGCAAGTCA
*
636646 ATCTTAAGCCTTCACC--AAAGAGAAGTGAAGCAAACC
1 ATCTTAAGCCTTCACCGGAAA-A-TAGTGAAGCAAACC
* *
636682 ATCCTAAGCCTTCACCGGAGAATAGTGAAGCAAACC
1 ATCTTAAGCCTTCACCGGAAAATAGTGAAGCAAACC
* * * *
636718 ATCTGAAGCCTTCACCGGAGAATAGTGAAGCAATCA
1 ATCTTAAGCCTTCACCGGAAAATAGTGAAGCAAACC
* *
636754 ATCTGAAGCCTTCACCGGAGAATAGTGAAGCAAACC
1 ATCTTAAGCCTTCACCGGAAAATAGTGAAGCAAACC
* * * *
636790 ATCATAAGTCTTCACC--AGAGTAGTGAAGCAAACC
1 ATCTTAAGCCTTCACCGGAAAATAGTGAAGCAAACC
* * *
636824 ATCTTAAGTCTTCACC-AAAAAGTAGTGAAGCAGATCC
1 ATCTTAAGCCTTCACCGGAAAA-TAGTGAAGCA-AACC
*
636861 ATTTTAAGCCTTC
1 ATCTTAAGCCTTC
636874 TCAGAAGAGT
Statistics
Matches: 168, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
34 32 0.19
35 2 0.01
36 117 0.70
37 15 0.09
38 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (36 bp):
ATCTTAAGCCTTCACCGGAAAATAGTGAAGCAAACC
Found at i:637318 original size:51 final size:51
Alignment explanation
Indices: 637242--637679 Score: 655
Period size: 51 Copynumber: 8.5 Consensus size: 51
637232 GTGAAGCAAA
* *
637242 TGAAGATATGCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
637293 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
637344 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
*
637395 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAATGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
*
637446 TGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
* * * * *
637497 TGAAGA-GATGTCTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTG
1 TGAAGATG-T-TC-GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
* * * *
637550 TGAAGATATCCGAGTTCCATACTCCTTAATGAAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
* *
637601 TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCATTTGT
1 TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCC--GT-T
637655 TGAAGATTGTTCGAG-TCTTATACTC
1 TGAAGA-TGTTCGAGTTC-TATACTC
637680 TCTGAAGAAA
Statistics
Matches: 356, Mismatches: 22, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
50 1 0.00
51 284 0.80
52 3 0.01
53 44 0.12
54 9 0.03
55 15 0.04
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (51 bp):
TGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
Found at i:637786 original size:55 final size:55
Alignment explanation
Indices: 637653--637969 Score: 441
Period size: 55 Copynumber: 5.8 Consensus size: 55
637643 GAACCCATTT
*
637653 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGGGCAGACGCGATC
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA--GGGGGCAGACGCAATC
*
637710 GTTGAAGATATATT-GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
1 GTTGAAGAT-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
* *
637765 GTTGAAGATTGTTCG-GATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATT
1 GTTGAAGATTGTTCGAG-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
* *
637820 GATGAAGATTGTT-G-GTCTTATACTCTCTGAAAAAATAGGGGGCAGACGCAATC
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
*
637873 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGA--CAAGTTT
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAA--TC
* *
637928 GTTGAAGA-TGATTCAAGTCTTATACCCTCTGAAGAAATAGGG
1 GTTGAAGATTG-TTCGAGTCTTATACTCTCTGAAGAAATAGGG
637970 AGCGAACCCA
Statistics
Matches: 238, Mismatches: 14, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
53 50 0.21
54 9 0.04
55 142 0.60
57 34 0.14
58 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (55 bp):
GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
Found at i:637893 original size:163 final size:165
Alignment explanation
Indices: 637655--637969 Score: 464
Period size: 163 Copynumber: 1.9 Consensus size: 165
637645 ACCCATTTGT
* *
637655 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGGGCAGACGCGATCGTTGAAGATA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATA-GGGGGGCAGACGCAATCGTTGAAGATA
*
637720 TATTGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAA-TCGTTGAAGATTG-TTC-GGA
65 TATTGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGA--CAAGTCGTTGAAGA-TGATTCAAG-
*
637782 TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
126 TCTTATACCCTCTGAAGAAATAGGGGGCAGACGCGATTGA
637822 TGAAGATTGTT-G-GTCTTATACTCTCTGAAAAAATA-GGGGGCAGACGCAATCGTTGAAGAT-T
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGGGGGGCAGACGCAATCGTTGAAGATAT
* *
637883 GTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAGTTTGTTGAAGATGATTCAAGTCT
66 ATT-GAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAG-TCGTTGAAGATGATTCAAGTCT
637948 TATACCCTCTGAAGAAATAGGG
129 TATACCCTCTGAAGAAATAGGG
637970 AGCGAACCCA
Statistics
Matches: 137, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
161 3 0.02
162 5 0.04
163 94 0.69
164 1 0.01
165 22 0.16
166 1 0.01
167 11 0.08
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (165 bp):
TGAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGGGGGGCAGACGCAATCGTTGAAGATAT
ATTGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAGTCGTTGAAGATGATTCAAGTCTTA
TACCCTCTGAAGAAATAGGGGGCAGACGCGATTGA
Found at i:637934 original size:108 final size:108
Alignment explanation
Indices: 637653--637969 Score: 467
Period size: 108 Copynumber: 2.9 Consensus size: 108
637643 GAACCCATTT
*
637653 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGGGCAGACGCGATCGTTGAAGA
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA--GGGGGCAGACGCGATTGTTGAAGA
*
637718 TATATTGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
64 T-TGTTG-GTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
*
637765 GTTGAAGATTGTTCG-GATCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGAT
1 GTTGAAGATTGTTCGAG-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGAT
*
637829 TGTTGGTCTTATACTCTCTGAAAAAATAGGGGGCAGACGCAATC
65 TGTTGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
** *
637873 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAAGTTTGTTGAAGA-T
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATT
* *
637937 GATTCAAGTCTTATACCCTCTGAAGAAATAGGG
66 G-TT--GGTCTTATACTCTCTGAAGAAATAGGG
637970 AGCGAACCCA
Statistics
Matches: 189, Mismatches: 11, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
107 2 0.01
108 97 0.51
109 5 0.03
110 47 0.25
111 1 0.01
112 37 0.20
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (108 bp):
GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGTTGAAGATT
GTTGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCAATC
Found at i:641669 original size:3 final size:3
Alignment explanation
Indices: 641661--641693 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
641651 TTTGTATTAA
*
641661 AAT AAT AAT AAT AA- AAT AAC AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
641694 TTTTAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:641677 original size:14 final size:14
Alignment explanation
Indices: 641658--641693 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
641648 AAATTTGTAT
*
641658 TAAAATAATAATAA
1 TAAAATAACAATAA
641672 TAAAATAACAATAA
1 TAAAATAACAATAA
641686 TAATAATA
1 TAA-AATA
641694 TTTTAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAAATAACAATAA
Found at i:642187 original size:131 final size:133
Alignment explanation
Indices: 641886--642217 Score: 427
Period size: 131 Copynumber: 2.5 Consensus size: 133
641876 AGTCATCTAA
* * * * *
641886 GGGTGACACAACTCCTAGGTGATGAGGAGATATGGTCAGTGGATGACATAGTTCCTATGCGATGA
1 GGGTGACACAACTCCTACGTGATGAGGAGGTATGGTCGGTGGATGACATGGTTCCTACGCGATGA
* * * * *
641951 GGACAGCATGTCATCTTTAGGAAGAGTGATAACACGGTTTCTACGCGATGAAGACGACTGATTAT
66 GGACAGCAGGACATCTTTAGG-AGAGTGATAACACGGTTCCTACGCAATGAAGACAACTGATTAT
*
642016 CTAG
130 ATAG
* * * *
642020 GGGTGACACAACTCCTATGTGATGAGGAGGTATGGTCGGGGGATGACACGGTTCCTACGTGATGA
1 GGGTGACACAACTCCTACGTGATGAGGAGGTATGGTCGGTGGATGACATGGTTCCTACGCGATGA
** * *
642085 GGATGGCAGGACATCTTTAGG-GA-TGATAACACGGTTCCTACGTAATGAGGACAACT-AGTTAT
66 GGACAGCAGGACATCTTTAGGAGAGTGATAACACGGTTCCTACGCAATGAAGACAACTGA-TTAT
*
642147 ATAT
130 ATAG
* *
642151 GGGTGACACAACTCCTACGTGATGAGGAGGTCTGGTCGGTGGATGATATGGTTCCTACGCGATGA
1 GGGTGACACAACTCCTACGTGATGAGGAGGTATGGTCGGTGGATGACATGGTTCCTACGCGATGA
642216 GG
66 GG
642218 GTGATATGTC
Statistics
Matches: 172, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 95 0.55
132 2 0.01
134 74 0.43
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (133 bp):
GGGTGACACAACTCCTACGTGATGAGGAGGTATGGTCGGTGGATGACATGGTTCCTACGCGATGA
GGACAGCAGGACATCTTTAGGAGAGTGATAACACGGTTCCTACGCAATGAAGACAACTGATTATA
TAG
Found at i:642411 original size:68 final size:66
Alignment explanation
Indices: 642241--642426 Score: 246
Period size: 68 Copynumber: 2.8 Consensus size: 66
642231 TTTAGGGATT
* * **
642241 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAACTTTGTTTTAAGGGAAACAAACTCAAAGATT
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACAAACTCAAAGAGA
642306 TG
65 TG
* * * *
642308 TGTTTCAAGATAAACGGTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACATACTCAAAGACGA
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAAACTCAAAGA-GA
642373 TG
65 TG
* * *
642375 TGTTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATTCGTTTCAAGGGAAAC
1 TG-TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAAC
642427 GATTTCAAAG
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
66 25 0.24
67 35 0.34
68 43 0.42
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (66 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAAACTCAAAGAGAT
G
Found at i:642435 original size:68 final size:65
Alignment explanation
Indices: 642241--642452 Score: 234
Period size: 68 Copynumber: 3.2 Consensus size: 65
642231 TTTAGGGATT
* * * **
642241 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAACTTTGTTTTAAGGGAAACAAACTCAAAGATT
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAAC-ATCTCAAAGAGA
642306 TG
64 TG
* * *
642308 TGTTTCAAGATAAACGGTCTCAAGGGAGACAAAATTTGTTTCAAGAGAAACATACTCAAAGACGA
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACAT-CTCAAAGA-GA
642373 TG
64 TG
* * * *
642375 TGTTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATTCGTTTCAAGGGAAACGATTTC-AA-AGA
1 TG-TTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAAC-ATCTCAAAGAGA
642438 T-
64 TG
642439 T-TTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
642453 AATTTCAAAG
Statistics
Matches: 126, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
62 13 0.10
64 1 0.01
65 4 0.03
66 24 0.19
67 37 0.29
68 45 0.36
69 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACATCTCAAAGAGATG
Found at i:642663 original size:37 final size:36
Alignment explanation
Indices: 642576--642742 Score: 223
Period size: 37 Copynumber: 4.6 Consensus size: 36
642566 TTTCTCAAAG
* *
642576 GAAAA-TGTCTCAAGCGAGACGAAATTTATTTTGA-
1 GAAAATTGTCTCAAGCGAGACAAAATTTATTTTTAC
*
642610 GAGAAATTGTCTCAAGCGAGACAAAATTTGTTTTTACC
1 GA-AAATTGTCTCAAGCGAGACAAAATTTATTTTTA-C
*
642648 GAAAATTGTCTCAAGCGAGACAAAATTTGTTTTTAAC
1 GAAAATTGTCTCAAGCGAGACAAAATTTATTTTT-AC
*
642685 GAAAATTGTCTCGAA-CGAGACAAAATTTATTTTTAA
1 GAAAATTGTCTC-AAGCGAGACAAAATTTATTTTTAC
642721 GAAAACTTGTCTCAAGCGAGAC
1 GAAAA-TTGTCTCAAGCGAGAC
642743 GACCCTTTGT
Statistics
Matches: 120, Mismatches: 5, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
34 2 0.02
35 3 0.03
36 34 0.28
37 76 0.63
38 5 0.04
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (36 bp):
GAAAATTGTCTCAAGCGAGACAAAATTTATTTTTAC
Found at i:643934 original size:8 final size:7
Alignment explanation
Indices: 643920--643975 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
643910 TATCTTTTTC
643920 TTTCTTT
1 TTTCTTT
643927 TGTTCTTT
1 T-TTCTTT
643935 TTTCTTT
1 TTTCTTT
*
643942 GTT-TTT
1 TTTCTTT
643948 TTTCTTCT
1 TTTCTT-T
*
643956 TTTC-TC
1 TTTCTTT
*
643962 TTTGTTT
1 TTTCTTT
643969 TTTCTTT
1 TTTCTTT
643976 GATTCTTTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
6 8 0.21
7 19 0.49
8 12 0.31
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.80
Consensus pattern (7 bp):
TTTCTTT
Found at i:643944 original size:14 final size:13
Alignment explanation
Indices: 643914--643953 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 13
643904 GTTTCTTATC
643914 TTTTTCTTTCTTTTG
1 TTTTT-TTTC-TTTG
643929 TTCTTTTTTCTTTG
1 TT-TTTTTTCTTTG
643943 TTTTTTTTCTT
1 TTTTTTTTCTT
643954 CTTTTCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.38
14 6 0.25
15 6 0.25
16 3 0.12
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:643950 original size:23 final size:23
Alignment explanation
Indices: 643906--643995 Score: 90
Period size: 23 Copynumber: 3.8 Consensus size: 23
643896 TTGCATATGT
* * * *
643906 TTCTTATCTTTTTCTTTCTTTTG
1 TTCTTTTCTCTTTGTTTTTTTTG
* *
643929 TTCTTTTTTCTTTGTTTTTTTTC
1 TTCTTTTCTCTTTGTTTTTTTTG
643952 TTCTTTTCTCTTTGTTTTTTCTTTG
1 TTCTTTTCTCTTTG-TTTTT-TTTG
*
643977 ATTCTTTTCTCATTGTTTT
1 -TTCTTTTCTCTTTGTTTT
643996 GATTGGATCT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
23 30 0.55
24 5 0.09
25 7 0.13
26 13 0.24
ACGTcount: A:0.03, C:0.16, G:0.06, T:0.76
Consensus pattern (23 bp):
TTCTTTTCTCTTTGTTTTTTTTG
Found at i:643992 original size:26 final size:25
Alignment explanation
Indices: 643912--643995 Score: 93
Period size: 26 Copynumber: 3.4 Consensus size: 25
643902 ATGTTTCTTA
* *
643912 TCTTT-TTCTTTCTTTTGTTCTTTTT
1 TCTTTGTTTTTTC-TTTGTTCTTTTC
*
643937 TCTTTG-TTTTT-TTTCTTCTTTTC
1 TCTTTGTTTTTTCTTTGTTCTTTTC
643960 TCTTTGTTTTTTCTTTGATTCTTTTC
1 TCTTTGTTTTTTCTTTG-TTCTTTTC
*
643986 TCATTGTTTT
1 TCTTTGTTTT
643996 GATTGGATCT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
23 16 0.32
24 5 0.10
25 12 0.24
26 17 0.34
ACGTcount: A:0.02, C:0.15, G:0.06, T:0.76
Consensus pattern (25 bp):
TCTTTGTTTTTTCTTTGTTCTTTTC
Found at i:648947 original size:3 final size:3
Alignment explanation
Indices: 648939--648974 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
648929 TTTGTATTAA
*
648939 AAT AAT AAT AAT AAT AAT AA- AAT AAT GAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
648975 GTGTTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:648961 original size:20 final size:20
Alignment explanation
Indices: 648936--648974 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
648926 AAATTTGTAT
648936 TAAAATAATAATAATAATAA
1 TAAAATAATAATAATAATAA
*
648956 TAAAATAATGATAATAATA
1 TAAAATAATAATAATAATA
648975 GTGTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
TAAAATAATAATAATAATAA
Found at i:648964 original size:17 final size:17
Alignment explanation
Indices: 648942--648974 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
648932 GTATTAAAAT
648942 AATAATAATAATAATAA
1 AATAATAATAATAATAA
*
648959 AATAATGATAATAATA
1 AATAATAATAATAATA
648975 GTGTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
AATAATAATAATAATAA
Found at i:652082 original size:91 final size:91
Alignment explanation
Indices: 651957--652136 Score: 288
Period size: 91 Copynumber: 2.0 Consensus size: 91
651947 CTCTGTGATT
* *
651957 GAATCTATCAAAAAGTTGAAGAAACTCTTTTCATTATGAACTTCTTCTTCCTCTTCGGACGAGTT
1 GAATCTATCAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTCTTCGGACGAGTT
*
652022 CTTCTCATTATGAACTTTTCCACTAG
66 CTTCTCATTATGAACTCTTCCACTAG
* * * *
652048 GAATTTATCAAAAGGTTGAACAAGCTCTTCTCATTATGAATTTCTTCTTCCTCTTCGGACGAGTT
1 GAATCTATCAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTCTTCGGACGAGTT
*
652113 CTTTTCATTATGAACTCTTCCACT
66 CTTCTCATTATGAACTCTTCCACT
652137 GAAAATGTTG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 81 1.00
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.39
Consensus pattern (91 bp):
GAATCTATCAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTCTTCGGACGAGTT
CTTCTCATTATGAACTCTTCCACTAG
Found at i:652512 original size:37 final size:36
Alignment explanation
Indices: 652443--652557 Score: 97
Period size: 36 Copynumber: 3.2 Consensus size: 36
652433 GAATGCAAAT
* * * *
652443 AAATTTGTTTGAA-AATGAACTATCCCAGGTGAGATA
1 AAATTTGTTTTAAGAA-AAACTATCTCAAGTGAGATA
* * * * **
652479 AAATTTGTTTTGAGGGAAAATTGTCTCAAGTGAGACG
1 AAATTTGTTTT-AAGAAAAACTATCTCAAGTGAGATA
* *
652516 AAGTTTGTTTTAAGAAAAACTATCTCGAGTGAGATA
1 AAATTTGTTTTAAGAAAAACTATCTCAAGTGAGATA
652552 AAATTT
1 AAATTT
652558 CTTGTTTCAA
Statistics
Matches: 58, Mismatches: 19, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
36 33 0.57
37 24 0.41
38 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (36 bp):
AAATTTGTTTTAAGAAAAACTATCTCAAGTGAGATA
Found at i:652623 original size:79 final size:74
Alignment explanation
Indices: 652471--652666 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 74
652461 ACTATCCCAG
* ** * * * * * *
652471 GTGAGATAAA-ATTTGTTTTGAGGGAAAATTGTCTCAAGTGAGACGAAGTTTGTTTTAAGAAAAA
1 GTGAGATAAATTTTTGTTTCAAGTGAAACTTGTCTCAAGCGAGACAAACTTTGCTTTAAGAAAAA
652535 CTATCTCGA
66 CTATCTCGA
* *
652544 GTGAGATAAAATTTCTTGTTTCAAGTGAAACAGTTGTCTCAAGCGAGACAAATCTTTGCTTTGAT
1 GTGAGAT-AAATTT-TTGTTTCAAGTGAAAC--TTGTCTCAAGCGAGACAAA-CTTTGCTTTAAG
652609 AAAAACTATCTCGA
61 AAAAACTATCTCGA
*
652623 GTGAGATAAATTTTTGTTTCGAGTGAAAC-TGTCTCAAGCGAGAC
1 GTGAGATAAATTTTTGTTTCAAGTGAAACTTGTCTCAAGCGAGAC
652667 GTCACTAATT
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
73 7 0.07
74 18 0.17
75 1 0.01
76 12 0.11
77 15 0.14
78 23 0.22
79 29 0.28
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (74 bp):
GTGAGATAAATTTTTGTTTCAAGTGAAACTTGTCTCAAGCGAGACAAACTTTGCTTTAAGAAAAA
CTATCTCGA
Found at i:652811 original size:42 final size:42
Alignment explanation
Indices: 652755--652838 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
652745 AAGGACTTAT
* *
652755 CATCTTGCTCGAAAGGCTTA-TAGATGACCCGAAGGATTTAAG
1 CATCATGCTCGAAAGACTTACT-GATGACCCGAAGGATTTAAG
652797 CATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTAAG
1 CATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTAAG
652839 AATTAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 38 0.97
43 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTAAG
Found at i:653081 original size:42 final size:42
Alignment explanation
Indices: 653029--653109 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
653019 AAAGTCTTAT
* *
653029 CATCTTGCTCGAAAGGCTTACAGATGACCCGAAGGATTTGAG
1 CATCATGCTCGAAAGACTTACAGATGACCCGAAGGATTTGAG
*
653071 CATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
1 CATCATGCTCGAAAGACTTACAGATGACCCGAAGGATTT
653110 ACAAATCAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTTACAGATGACCCGAAGGATTTGAG
Found at i:653111 original size:20 final size:20
Alignment explanation
Indices: 653046--653111 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
653036 CTCGAAAGGC
*
653046 TTACAGATGACCCGAAGGAT
1 TTACTGATGACCCGAAGGAT
* * * *
653066 TTGAGCATCATG-CTCGAAAGAC
1 TT-A-C-TGATGACCCGAAGGAT
653088 TTACTGATGACCCGAAGGAT
1 TTACTGATGACCCGAAGGAT
653108 TTAC
1 TTAC
653112 AAATCAAGAA
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
19 4 0.12
20 14 0.42
21 2 0.06
22 10 0.30
23 3 0.09
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (20 bp):
TTACTGATGACCCGAAGGAT
Found at i:653208 original size:274 final size:274
Alignment explanation
Indices: 652707--653663 Score: 1494
Period size: 274 Copynumber: 3.5 Consensus size: 274
652697 AACGAAAATA
* * *
652707 TTGAAAACATTCTGCC-CAGAGGTCTTATGGATGGCCTAAAGGACTTATCATCTTGCTCGAAAGG
1 TTGAAAACATCCTGCCTGA-AGGTCTTATGGATGGCCGAAAGGACTTATCATCTTGCTCGAAAGG
*
652771 CTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
65 CTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
* * *
652836 A-AGAATTAATAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAATCCCTTAAAAAT
130 ACA-AATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTT-AAAAT
* * *
652900 TAGGCTTAGCTTCCTCT-ACAAATCTTTGGAGATAATCATCAAGAAACCCCTGAAAATCAGGCTT
193 TAGGCTTAGCTTCCTTTAACAACTCTTTTGAGATAATCATCAAGAAACCCCTGAAAATCAGGCTT
652964 AGTTTCTAAAATATCAT
258 AGTTTCTAAAATATCAT
* *
652981 TTGAAAACATCATGCCTGAAGGTCTTATGGATGGCCCGAAA-GTCTTATCATCTTGCTCGAAAGG
1 TTGAAAACATCCTGCCTGAAGGTCTTATGGATGG-CCGAAAGGACTTATCATCTTGCTCGAAAGG
*
653045 CTTACAGATGACCCGAAGGATTTGAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
65 CTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
*
653110 ACAAATCAAGAAACTCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTAAAATTA
130 ACAAATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTAAAATTA
* *
653175 GGCTTAGCTTCCTTTAACAACTCTTTTGAGATAATCATCAAGAAACCCCTAAAAATCAGGCCTAG
195 GGCTTAGCTTCCTTTAACAACTCTTTTGAGATAATCATCAAGAAACCCCTGAAAATCAGGCTTAG
*
653240 TTTCTAAAATCTCAT
260 TTTCTAAAATATCAT
* * * *
653255 TTGAAAACATCCTACCTGAAGATCTTATGGATGGCCCG-AATGACTTATCATCTTGTTCGAAAGG
1 TTGAAAACATCCTGCCTGAAGGTCTTATGGATGG-CCGAAAGGACTTATCATCTTGCTCGAAAGG
* * *
653319 CTTACAAATGACCTGAAGGATTTAAGCATCATACTCGAAAGACTTACTGATGACCCGAAGGATTT
65 CTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
* *
653384 ACAAATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTATCAAGGAACCCATTAAAATTA
130 ACAAATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTAAAATTA
653449 GGCTTAGCTTCCTTTAACAACTCTTTTGAGATAATCATCAAGAAACCCCTGAAAATCAGGCTTAG
195 GGCTTAGCTTCCTTTAACAACTCTTTTGAGATAATCATCAAGAAACCCCTGAAAATCAGGCTTAG
653514 TTTCTAAAATATCAT
260 TTTCTAAAATATCAT
* * *
653529 TTGAAAACATCCTGTCC-GAAGGTCTTTTGGATGGCCTAAAGGACTTATAATCTTGCTCGAAAGG
1 TTGAAAACATCCTG-CCTGAAGGTCTTATGGATGGCCGAAAGGACTTATCATCTTGCTCGAAAGG
* * * ** * *
653593 CTTATAGATGACCCGAAAGATTTAAGCATCATGCTCGAAAGACTTACTAATGGTCTGAAGGAGTT
65 CTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTT
653658 ACAAAT
130 ACAAAT
653664 TCGGGAAATA
Statistics
Matches: 627, Mismatches: 49, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
273 25 0.04
274 593 0.95
275 9 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (274 bp):
TTGAAAACATCCTGCCTGAAGGTCTTATGGATGGCCGAAAGGACTTATCATCTTGCTCGAAAGGC
TTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCCGAAGGATTTA
CAAATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTTAAAATTAG
GCTTAGCTTCCTTTAACAACTCTTTTGAGATAATCATCAAGAAACCCCTGAAAATCAGGCTTAGT
TTCTAAAATATCAT
Found at i:654421 original size:34 final size:34
Alignment explanation
Indices: 654378--654445 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
654368 CTATCATTTT
654378 TGAAGAATGTAGATGTAGATATGCCAAACTCAAC
1 TGAAGAATGTAGATGTAGATATGCCAAACTCAAC
654412 TGAAGAATGTAGATGTAGATATGCCAAACTCAAC
1 TGAAGAATGTAGATGTAGATATGCCAAACTCAAC
654446 ATAGATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (34 bp):
TGAAGAATGTAGATGTAGATATGCCAAACTCAAC
Found at i:659175 original size:20 final size:20
Alignment explanation
Indices: 659150--659191 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
659140 AGATGCCTCT
659150 ACTGATACTCTTATCTTTGA
1 ACTGATACTCTTATCTTTGA
659170 ACTGATACTCTTATCTTTGA
1 ACTGATACTCTTATCTTTGA
659190 AC
1 AC
659192 ACTTTGGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (20 bp):
ACTGATACTCTTATCTTTGA
Found at i:674000 original size:64 final size:63
Alignment explanation
Indices: 673915--674076 Score: 220
Period size: 64 Copynumber: 2.5 Consensus size: 63
673905 TCCTTAAAAT
* **
673915 GTGTATAGATACACTAACTATGTATCGATACACAAATTACATTCGAT-TTTT-TTCTTTACAAGA
1 GTGTATCGATACACTTCCTATGTATCGATACACAAATTACATTCGATGTTTTATT-TTTA-AAG-
673978 A
63 A
* *
673979 GTTTATCGATACACTTCCTATGTATCGATACACAAATTACATTCGATGTTTTCATTTTTAAAGG
1 GTGTATCGATACACTTCCTATGTATCGATACACAAATTACATTCGATGTTTT-ATTTTTAAAGA
*
674043 GTGTATCGATACACTTCCTATGTATCGGTACACA
1 GTGTATCGATACACTTCCTATGTATCGATACACA
674077 CTGAATAATT
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
64 75 0.85
65 7 0.08
66 4 0.05
67 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (63 bp):
GTGTATCGATACACTTCCTATGTATCGATACACAAATTACATTCGATGTTTTATTTTTAAAGA
Found at i:675687 original size:10 final size:10
Alignment explanation
Indices: 675671--675725 Score: 67
Period size: 10 Copynumber: 5.2 Consensus size: 10
675661 ATAATAAAAC
675671 AAAAAAAT-A
1 AAAAAAATGA
675680 ATAAAAAATGAA
1 A-AAAAAATG-A
675692 AAAAAAATGA
1 AAAAAAATGA
675702 AAAAAAATGA
1 AAAAAAATGA
675712 AAATGAAAATGA
1 AAA--AAAATGA
675724 AA
1 AA
675726 GGGACCAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.02
10 21 0.51
11 8 0.20
12 11 0.27
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:675693 original size:6 final size:6
Alignment explanation
Indices: 675684--675725 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
675674 AAAATAATAA
*
675684 AAAATG AAAA-A AAAATG AAAA-- AAAATG AAAATG AAAATG AAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAA
675726 GGGACCAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
4 4 0.13
5 4 0.13
6 23 0.74
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:675697 original size:21 final size:21
Alignment explanation
Indices: 675671--675725 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
675661 ATAATAAAAC
675671 AAAAAAAT-AATAAAAAATGAA
1 AAAAAAATGAA-AAAAAATGAA
675692 AAAAAAATGAAAAAAAATGAA
1 AAAAAAATGAAAAAAAATGAA
*
675713 AATGAAAATGAAA
1 AA-AAAAATGAAA
675726 GGGACCAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (21 bp):
AAAAAAATGAAAAAAAATGAA
Found at i:677528 original size:86 final size:85
Alignment explanation
Indices: 677425--677987 Score: 389
Period size: 85 Copynumber: 6.6 Consensus size: 85
677415 ATGTGTCATC
* * * **
677425 GAGCTGAATGGAATCGAACTTGACA-GTTTCTTGTTGACATATAGCTTTTCTCGACTTAAGCAAA
1 GAGCTGAATGGAATCGAACTCGA-AGGTAT-TTGTTGACAGATAGCCCTTCTCGACTTAAGCAAA
*
677489 GTTGTAAATTTGACATGCCCTT
64 GATGTAAATTTGACATGCCCTT
* * * *
677511 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGA
1 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCGACTTAAGCAAAGA
* *
677576 TGTAAATTTGATATGCCTTT
66 TGTAAATTTGACATGCCCTT
** * * * * *
677596 GAGCTGAATATAATCGAACTCGAAGGTCTTTGATGACAGATAGCCCTTCTCGTCTTGAA-CTATG
1 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCGACTT-AAGCAAAG
* ** **
677660 CTGTAAATTTGATGTGCTTTT
65 ATGTAAATTTGACATGCCCTT
* * * * * * * * * ** * *
677681 AAGCTGAGTGTAATCGAACTAGAAGGTGTTAGTTGACAGATAACCCTTCTCGCCTTGAGTTATGC
1 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCGACTTAAGCAAAGA
* *
677746 TGTAAATTTGATATGCCTTT
66 TGTAAATTTGACATGCCCTT
* * * * * * * * *
677766 GAGCTGAGTGTAATCGAACTCGAAGGTCTTGGATGACAGATAACCCTTCTC-ACCTTGAGTTATA
1 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCGA-CTTAAG-CAAA
* * * *
677830 -TTATAAATTTGATATGCCTTT
64 GATGTAAATTTGACATGCCCTT
* ** * * * * * * *
677851 GAGCTGAGTATAATCGAACTCGAAGGTCTTGGTTGACA-ATAAGCCCTTTTCGCCTTGAGCTATG
1 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGAT-AGCCCTTCTCGACTTAAGCAAAG
* * *
677915 CTGTAAATTTGATATGCCTTT
65 ATGTAAATTTGACATGCCCTT
* * * * * * *
677936 GAGCTGAGTGTAATCGAACTCAAAGGTCTTGGTTGATAGATAACCCTTCTCG
1 GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCG
677988 CCCTGAGCTA
Statistics
Matches: 407, Mismatches: 61, Indels: 19
0.84 0.13 0.04
Matches are distributed among these distances:
84 3 0.01
85 375 0.92
86 29 0.07
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (85 bp):
GAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCCCTTCTCGACTTAAGCAAAGA
TGTAAATTTGACATGCCCTT
Found at i:677580 original size:85 final size:85
Alignment explanation
Indices: 677491--678001 Score: 700
Period size: 85 Copynumber: 6.0 Consensus size: 85
677481 TAAGCAAAGT
* * * * * *
677491 TGTAAATTTGACATGCCCTTGAGCTGAATGGAATCGAACTCGAAGGTATTTGTTGACAGATAGCC
1 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCC
*
677556 CTTCTCGCCTTGAGCTATGA
66 CTTCTCGCCTTGAGCTATGC
* * * *
677576 TGTAAATTTGATATGCCTTTGAGCTGAATATAATCGAACTCGAAGGTCTTTGATGACAGATAGCC
1 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCC
* *
677641 CTTCTCGTCTTGAACTATGC
66 CTTCTCGCCTTGAGCTATGC
* * * * * * *
677661 TGTAAATTTGATGTGCTTTTAAGCTGAGTGTAATCGAACTAGAAGGTGTTAGTTGACAGATAACC
1 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCC
*
677726 CTTCTCGCCTTGAGTTATGC
66 CTTCTCGCCTTGAGCTATGC
* *
677746 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGATGACAGATAACC
1 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCC
* * **
677811 CTTCTCACCTTGAGTTATAT
66 CTTCTCGCCTTGAGCTATGC
* *
677831 TATAAATTTGATATGCCTTTGAGCTGAGTATAATCGAACTCGAAGGTCTTGGTTGACA-ATAAGC
1 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGAT-AGC
*
677895 CCTTTTCGCCTTGAGCTATGC
65 CCTTCTCGCCTTGAGCTATGC
* * *
677916 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTGGTTGATAGATAACC
1 TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCC
*
677981 CTTCTCGCCCTGAGCTATGC
66 CTTCTCGCCTTGAGCTATGC
678001 T
1 T
678002 TCCAATAGTT
Statistics
Matches: 376, Mismatches: 48, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
84 2 0.01
85 372 0.99
86 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (85 bp):
TGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGCC
CTTCTCGCCTTGAGCTATGC
Found at i:691040 original size:2 final size:2
Alignment explanation
Indices: 691033--691066 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
691023 AACATGCATA
691033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
691067 AAATGCACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:691180 original size:94 final size:96
Alignment explanation
Indices: 691017--691230 Score: 344
Period size: 94 Copynumber: 2.2 Consensus size: 96
691007 ACCAATACAT
691017 ACAGCTAACATGCATAATATATATATATATATATATATATATATATTATAAAATGCACAATGCAC
1 ACAGCTAACATGCATAATATATATATATATATATATATATATATATTATAAAATGCACAATGCAC
* * *
691082 GAAAAAAATGTGTAAATTTATGAAATGCACG
66 GAAAAAAATGAGTAAATTTATAAAATGCACC
* *
691113 ACAGCTAACATGCATAATA-ATGA-A-ATATATATATATATATATATTATGAAATGTACAATGCA
1 ACAGCTAACATGCATAATATAT-ATATATATATATATATATATATATTATAAAATGCACAATGCA
691175 CGAAAAAAATGAGTAAATTTATAAAATGCACC
65 CGAAAAAAATGAGTAAATTTATAAAATGCACC
*
691207 ACAGCTAACATGCATTATATATAT
1 ACAGCTAACATGCATAATATATAT
691231 TATGAACACA
Statistics
Matches: 109, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
94 84 0.77
95 5 0.05
96 20 0.18
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.30
Consensus pattern (96 bp):
ACAGCTAACATGCATAATATATATATATATATATATATATATATATTATAAAATGCACAATGCAC
GAAAAAAATGAGTAAATTTATAAAATGCACC
Found at i:695672 original size:21 final size:21
Alignment explanation
Indices: 695629--695721 Score: 109
Period size: 21 Copynumber: 4.5 Consensus size: 21
695619 TTTTCCCAAT
** *
695629 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTGGGAAAA
*
695649 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTGGGAAAA
** *
695670 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTGGGAAAA
695690 TCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAATTGGGAAAA
695711 TCGCAATGCGA
1 TCGCAATGCGA
695722 TACTGACTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.47
21 32 0.53
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (21 bp):
TCGCAATGCGAATTGGGAAAA
Found at i:695735 original size:20 final size:20
Alignment explanation
Indices: 695710--695803 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
695700 AATTGGGAAA
*
695710 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
695730 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
695751 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
695771 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
695791 TTCGCAACGCGAT
1 ATCGCAACGCGAT
695804 TTACATAGCG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 46 0.77
21 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:695741 original size:41 final size:41
Alignment explanation
Indices: 695629--695721 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
695619 TTTTCCCAAT
*
695629 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTGGGAAAA
695670 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAATGCGAATTGGGAAAA
695711 TCGCAATGCGA
1 TCGCAATGCGA
695722 TACTGACTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAATGCGAATTGGGAAAA
Found at i:695752 original size:41 final size:41
Alignment explanation
Indices: 695707--695784 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
695697 GCGAATTGGG
* * *
695707 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
* *
695748 AAAATCGCAACGAGATACTTACTTTCGCAACGCGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATA
695785 CTGACTTTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
Found at i:695756 original size:21 final size:20
Alignment explanation
Indices: 695629--695757 Score: 66
Period size: 20 Copynumber: 6.3 Consensus size: 20
695619 TTTTCCCAAT
*
695629 TCGCAATGCG-AATAAGTAAA
1 TCGCAATGCGAAATAA-AAAA
* * **
695649 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAAAT-AAAAAA
*
695670 TCGCAATGCG-AATAAGTAAA
1 TCGCAATGCGAAATAA-AAAA
* **
695690 TCGCAATGCGAATTGGGAAAA
1 TCGCAATGCGAAAT-AAAAAA
* * **
695711 TCGCAATGCGATACT-GACTA
1 TCGCAATGCGA-AATAAAAAA
695731 TCGCAATGCGATAATAAAAAA
1 TCGCAATGCGA-AATAAAAAA
695752 TCGCAA
1 TCGCAA
695758 CGAGATACTT
Statistics
Matches: 81, Mismatches: 21, Indels: 13
0.70 0.18 0.11
Matches are distributed among these distances:
20 41 0.51
21 38 0.47
22 2 0.02
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAAATAAAAAA
Found at i:696382 original size:19 final size:19
Alignment explanation
Indices: 696358--696402 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
696348 GCAACTAGAT
*
696358 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAACAAA
* *
696377 AATCGCAACGCTAAACCAA
1 AATCGCAACGCGAAACAAA
696396 AATCGCA
1 AATCGCA
696403 TTGCGATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.49, C:0.27, G:0.13, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAACAAA
Found at i:696420 original size:19 final size:19
Alignment explanation
Indices: 696398--696582 Score: 165
Period size: 19 Copynumber: 10.1 Consensus size: 19
696388 TAAACCAAAA
*
696398 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
696417 TCGCGATGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
696436 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
696455 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
696475 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
696491 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
696508 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
696522 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
696541 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
696561 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
696581 TC
1 TC
696583 AACCAAAAGA
Statistics
Matches: 136, Mismatches: 17, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
14 20 0.15
15 1 0.01
16 3 0.02
17 3 0.02
18 1 0.01
19 58 0.43
20 49 0.36
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:696477 original size:39 final size:38
Alignment explanation
Indices: 696398--696487 Score: 144
Period size: 39 Copynumber: 2.3 Consensus size: 38
696388 TAAACCAAAA
*
696398 TCGCATTGCGATTTTCATTTCGCGATGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGATGCGATTTTCATT
* *
696436 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GATGCGATTTTCATT
696475 TCGCGTTGCGATT
1 TCGCGTTGCGATT
696488 GTCTGGTCGC
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
38 21 0.44
39 27 0.56
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGATGCGATTTTCATT
Found at i:696498 original size:39 final size:39
Alignment explanation
Indices: 696423--696498 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
696413 CATTTCGCGA
* **
696423 TGCGATTTTCATTTCGCGTTGCGATTTTTATTTCGCGGT
1 TGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCGGT
696462 TGCGATTTTCATTTCGCGTTGCGATTGTCT-GGTCGCG
1 TGCGATTTTCATTTCGCGTTGCGATT-TCTAGGTCGCG
696499 ATAGTCATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 31 0.94
40 2 0.06
ACGTcount: A:0.09, C:0.20, G:0.26, T:0.45
Consensus pattern (39 bp):
TGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCGGT
Found at i:696507 original size:33 final size:33
Alignment explanation
Indices: 696470--696557 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
696460 GTTGCGATTT
* *
696470 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
696503 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
696536 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
696558 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:696559 original size:20 final size:20
Alignment explanation
Indices: 696525--696582 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
696515 GCGATTCTCT
**
696525 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
696545 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
696565 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
696583 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:698643 original size:42 final size:42
Alignment explanation
Indices: 698583--698705 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
698573 GCCCGACTCG
* * *
698583 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
698625 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
698667 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
698706 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:698663 original size:21 final size:21
Alignment explanation
Indices: 698639--698705 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
698629 TCATTCCTCG
698639 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
698660 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
698681 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
698702 AGAG
1 AGAG
698706 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:700087 original size:14 final size:14
Alignment explanation
Indices: 700068--700103 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
700058 TTTAATTAAT
700068 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
700082 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
700096 TGATTTGT
1 TGATTTGT
700104 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:700304 original size:19 final size:19
Alignment explanation
Indices: 700282--700412 Score: 85
Period size: 19 Copynumber: 7.7 Consensus size: 19
700272 TGAAATTAAA
*
700282 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
700301 TTCGCATTGCGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
700317 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
* *
700334 TTCACATTGCGA-----AA
1 TTCGCATTGCGATTTTCAT
* *
700348 TTAGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
700367 TTCGCATTGCGA--TTC--
1 TTCGCATTGCGATTTTCAT
*
700382 -TCTCATTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
700400 TTCGCATTGCGAT
1 TTCGCATTGCGAT
700413 AGTAATTTCC
Statistics
Matches: 82, Mismatches: 15, Indels: 30
0.65 0.12 0.24
Matches are distributed among these distances:
14 26 0.32
16 9 0.11
17 8 0.10
19 39 0.48
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:700328 original size:33 final size:32
Alignment explanation
Indices: 700286--700412 Score: 175
Period size: 33 Copynumber: 3.9 Consensus size: 32
700276 ATTAAATTCG
700286 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* **
700319 CGTTGCGATTTTCATTTCACATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
700352 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
*
700385 CATTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
700413 AGTAATTTCC
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
31 3 0.04
33 77 0.93
35 3 0.04
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:700391 original size:66 final size:66
Alignment explanation
Indices: 700279--700411 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
700269 ACGTGAAATT
* *
700279 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCACATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCATTGCGATTTTCATTTCACATTGC
700344 G
66 G
* *
700345 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCATTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCATTGCGATTTTCATTTCACATTGC
700410 G
66 G
700411 A
1 A
700412 TAGTAATTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCATTGCGATTTTCATTTCACATTGC
G
Found at i:702720 original size:12 final size:12
Alignment explanation
Indices: 702703--702727 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
702693 TCTTCGAGGA
702703 CTTTTTCTTCTT
1 CTTTTTCTTCTT
702715 CTTTTTCTTCTT
1 CTTTTTCTTCTT
702727 C
1 C
702728 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:702936 original size:24 final size:24
Alignment explanation
Indices: 702902--702955 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
702892 CTGAAATATC
* *
702902 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
702926 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
702950 ATCAAA
1 ATCAAA
702956 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:703853 original size:20 final size:20
Alignment explanation
Indices: 703828--703925 Score: 160
Period size: 20 Copynumber: 4.9 Consensus size: 20
703818 ATTCATTTGA
703828 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
703848 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
703868 CTATCGTAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
703888 TTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
703908 TTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
703926 CGCAATGCGA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 74 1.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.18
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:703986 original size:33 final size:33
Alignment explanation
Indices: 703944--704021 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
703934 GAAATGAAAA
* ***
703944 TCGCATTGCGATTTTCTCGTTGTGATTTTCATT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
703977 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
*
704010 TCGCGTTGCGAT
1 TCGCATTGCGAT
704022 AGTCTGTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.44
Consensus pattern (33 bp):
TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
Found at i:703989 original size:19 final size:16
Alignment explanation
Indices: 703944--703995 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 16
703934 GAAATGAAAA
703944 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
*
703960 TCG--TTGTGATTTTC
1 TCGCATTGCGATTTTC
703974 ATTTCGCATTGCGATTTTC
1 ---TCGCATTGCGATTTTC
703993 TCG
1 TCG
703996 TTGCGATAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 10 0.34
16 6 0.21
17 3 0.10
19 10 0.34
ACGTcount: A:0.12, C:0.21, G:0.19, T:0.48
Consensus pattern (16 bp):
TCGCATTGCGATTTTC
Found at i:706035 original size:19 final size:19
Alignment explanation
Indices: 706011--706077 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
706001 GAAACTTAAA
706011 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
* *
706030 ATCGCAACGTGGAAATGGCT
1 ATCGCAACG-CGAAATGACT
* **
706050 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
706069 ATCGCAACG
1 ATCGCAACG
706078 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 23 0.59
20 16 0.41
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:706085 original size:14 final size:14
Alignment explanation
Indices: 706066--706123 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
706056 ATGCGAAATG
706066 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
706080 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
706096 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
706112 AAAATCGCAACG
1 AAAATCGCAACG
706124 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:706108 original size:32 final size:33
Alignment explanation
Indices: 706050--706128 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
706040 GGAAATGGCT
*
706050 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
706083 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
706115 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
706129 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:706157 original size:19 final size:17
Alignment explanation
Indices: 706135--706230 Score: 78
Period size: 19 Copynumber: 5.6 Consensus size: 17
706125 GAAACACAAA
706135 TCGCATTGCGATTTTCATT
1 TCGC-TTGCGA-TTTCATT
*
706154 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
706170 TCG-TTGCGATTTCATT
1 TCGCTTGCGATTTCATT
706186 TCGCGTTGCGATTT--TT
1 TCGC-TTGCGATTTCATT
706202 TCG-TTGCGATTTTCATT
1 TCGCTTGCGA-TTTCATT
*
706219 TTGCATTGCGAT
1 TCGC-TTGCGAT
706231 AGCCATTTCC
Statistics
Matches: 64, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
14 15 0.23
15 3 0.05
16 13 0.20
17 4 0.06
18 13 0.20
19 16 0.25
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.48
Consensus pattern (17 bp):
TCGCTTGCGATTTCATT
Found at i:706176 original size:14 final size:14
Alignment explanation
Indices: 706157--706214 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
706147 TTTCATTTCG
*
706157 CGTTGCGATTTTGT
1 CGTTGCGATTTTTT
706171 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TTT
706187 CGCGTTGCGATTTTTT
1 --CGTTGCGATTTTTT
706203 CGTTGCGATTTT
1 CGTTGCGATTTT
706215 CATTTTGCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
14 23 0.59
16 5 0.13
18 11 0.28
ACGTcount: A:0.09, C:0.17, G:0.24, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTTT
Found at i:706228 original size:33 final size:33
Alignment explanation
Indices: 706140--706230 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
706130 ACAAATCGCA
706140 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
706173 TTGCGA-TTTCATTTCGCGTTGCGATTTTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
* *
706205 TTGCGATTTTCATTTTGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
706231 AGCCATTTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 31 0.57
33 23 0.43
ACGTcount: A:0.11, C:0.18, G:0.22, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:706249 original size:20 final size:20
Alignment explanation
Indices: 706224--706269 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
706214 TCATTTTGCA
706224 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
* * *
706244 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGCCATTTCCGCG
706264 TTGCGA
1 TTGCGA
706270 AAGTAAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:706768 original size:18 final size:18
Alignment explanation
Indices: 706742--706786 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
706732 GTCGATCAGA
**
706742 TGATGGCTCTGGGTTAGG
1 TGATGGCTCTGGGCGAGG
*
706760 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
706778 TGATGGCTC
1 TGATGGCTC
706787 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.16, G:0.42, T:0.29
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:708130 original size:20 final size:20
Alignment explanation
Indices: 708105--708142 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
708095 AATAGTTTCT
708105 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
708125 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
708143 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:708431 original size:22 final size:22
Alignment explanation
Indices: 708406--708449 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
708396 GATTTAGATA
708406 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
708428 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
708450 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:708702 original size:41 final size:41
Alignment explanation
Indices: 708657--708734 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
708647 CGAAAGTCAG
* * *
708657 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTTTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
* *
708698 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTT
708735 CCCAATTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
Found at i:708723 original size:20 final size:20
Alignment explanation
Indices: 708617--708731 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
708607 CGCTTTGAAA
*
708617 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* * *
708638 ATCGCGTTACGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
708658 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
708678 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
708699 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
708719 ATCGCATTGCGAT
1 ATCGCATTGCGAT
708732 TTTCCCAATT
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
19 2 0.03
20 49 0.66
21 23 0.31
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:708750 original size:41 final size:41
Alignment explanation
Indices: 708657--708752 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 41
708647 CGAAAGTCAG
* * * ** *
708657 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCAA
* *
708698 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAA
1 TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTT-CCAA
708740 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
708753 TTACTTATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
41 43 0.96
42 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCAA
Found at i:715487 original size:21 final size:20
Alignment explanation
Indices: 715438--715487 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
715428 GTAATGTTAT
715438 TTCATAT-ATTATTAAATTTA
1 TTCATATAATTATT-AATTTA
* *
715458 TTAAAATAATTATTAATTTA
1 TTCATATAATTATTAATTTA
715478 TTCAGTATAA
1 TTCA-TATAA
715488 AATACTAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATATAATTATTAATTTA
Found at i:716144 original size:29 final size:29
Alignment explanation
Indices: 716090--716151 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
716080 TAAAACGTGG
* *
716090 TGTCTAACATCGTTTTTCACATAACGCGA
1 TGTCTAACATCGTTTTTCACAGAACGCAA
*
716119 TGTCTAACATCGTTTTTCATAGAACGCAA
1 TGTCTAACATCGTTTTTCACAGAACGCAA
716148 TGTC
1 TGTC
716152 ATCCTACATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (29 bp):
TGTCTAACATCGTTTTTCACAGAACGCAA
Found at i:717739 original size:20 final size:20
Alignment explanation
Indices: 717679--717740 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
717669 ATGAGTATTT
*
717679 TGTAAGGGTTGTATTGATACC
1 TGTAAGGGTAGTATTGATA-C
* * * *
717700 TGTTGAGAGTGGTATCGATAC
1 TG-TAAGGGTAGTATTGATAC
717721 TGTAAGGGTAGTATTGATAC
1 TGTAAGGGTAGTATTGATAC
717741 CTGAATAATG
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 14 0.44
21 5 0.16
22 13 0.41
ACGTcount: A:0.26, C:0.08, G:0.31, T:0.35
Consensus pattern (20 bp):
TGTAAGGGTAGTATTGATAC
Found at i:717879 original size:58 final size:54
Alignment explanation
Indices: 717750--717879 Score: 163
Period size: 54 Copynumber: 2.3 Consensus size: 54
717740 CCTGAATAAT
* * *
717750 GGTATCGATACCCTTAAAACATCGAATGCCAATTTGGTATCGGTACCTTGAGGA
1 GGTATCGATACCCTTGAAACATCGAATGCCAATTCGGTATCGATACCTTGAGGA
**
717804 GGTATCGATACCCTTGAAACATCGAATG-TTATATCGGTATCGATACCTCCCATGAGGA
1 GGTATCGATACCCTTGAAACATCGAATGCCAAT-TCGGTATCGATACCT----TGAGGA
717862 GGTATCGATACCCTTGAA
1 GGTATCGATACCCTTGAA
717880 GGGAAGTATC
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
53 2 0.03
54 40 0.61
58 24 0.36
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (54 bp):
GGTATCGATACCCTTGAAACATCGAATGCCAATTCGGTATCGATACCTTGAGGA
Found at i:718462 original size:21 final size:22
Alignment explanation
Indices: 718438--718533 Score: 85
Period size: 23 Copynumber: 4.4 Consensus size: 22
718428 AGTCGAGGGT
718438 TTATGTGGTCCTTCGGG-ACAA-
1 TTATGTGGTCCTTCGGGCA-AAC
*
718459 TTATGTGGTCCTTCGATGCAAAC
1 TTATGTGGTCCTTCG-GGCAAAC
*
718482 CTATGTGG-CACTTCGGTGCAAAC
1 TTATGTGGTC-CTTCGG-GCAAAC
*
718505 CTATGTGGTCCTTCGGG-ACAA-
1 TTATGTGGTCCTTCGGGCA-AAC
718526 TTATGTGG
1 TTATGTGG
718534 CACTTCAGTG
Statistics
Matches: 64, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
21 23 0.36
22 7 0.11
23 33 0.52
24 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (22 bp):
TTATGTGGTCCTTCGGGCAAAC
Found at i:718520 original size:23 final size:23
Alignment explanation
Indices: 718439--718520 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
718429 GTCGAGGGTT
*
718439 TATGTGGTCCTTCGG-G-ACAA-T
1 TATGTGGTCCTTCGGTGCA-AACC
*
718460 TATGTGGTCCTTCGATGCAAACC
1 TATGTGGTCCTTCGGTGCAAACC
718483 TATGTGG-CACTTCGGTGCAAACC
1 TATGTGGTC-CTTCGGTGCAAACC
718506 TATGTGGTCCTTCGG
1 TATGTGGTCCTTCGG
718521 GACAATTATG
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
21 14 0.26
22 4 0.08
23 34 0.64
24 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (23 bp):
TATGTGGTCCTTCGGTGCAAACC
Found at i:721327 original size:15 final size:15
Alignment explanation
Indices: 721303--721336 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
721293 CCGTAGGACC
721303 ACTACATCCCGAAGG
1 ACTACATCCCGAAGG
*
721318 ACTACGTCCCGAAGG
1 ACTACATCCCGAAGG
721333 ACTA
1 ACTA
721337 TTATACCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.15
Consensus pattern (15 bp):
ACTACATCCCGAAGG
Found at i:721463 original size:29 final size:29
Alignment explanation
Indices: 721421--721501 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
721411 TTCCATATGT
721421 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
721449 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
721478 TCATGTAGCTCATGTCATGTTCTC
1 TCATGTAGCTCATGTCAT-TTCTC
721502 ATATCACATA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 7 0.14
29 39 0.76
30 5 0.10
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.44
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Found at i:721947 original size:64 final size:63
Alignment explanation
Indices: 721878--722034 Score: 192
Period size: 64 Copynumber: 2.5 Consensus size: 63
721868 TAATAAAGGT
* **
721878 ATGCATCGATGCACTACTTGTACATCGATGCATAAAATGCATTCGAT-GTTTTATTATTAATGGG
1 ATGCATCGATGCACTACTTGTGCATCGATGCATAAAATGCATTCGATCGTTTTATT-TTAA-AAG
* * * * *
721942 ATGCATCGATGCA-TGCCTTATGCATCGATGCATTAATTGCATTCGATCTTTTTATTTTAAAAG
1 ATGCATCGATGCACT-ACTTGTGCATCGATGCATAAAATGCATTCGATCGTTTTATTTTAAAAG
722005 AGTGCATCGATGCACTACTTGTGCATCGAT
1 A-TGCATCGATGCACTACTTGTGCATCGAT
722035 ACACCTTCAA
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
63 3 0.04
64 68 0.86
65 8 0.10
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (63 bp):
ATGCATCGATGCACTACTTGTGCATCGATGCATAAAATGCATTCGATCGTTTTATTTTAAAAG
Found at i:728381 original size:29 final size:29
Alignment explanation
Indices: 728339--728419 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
728329 TTCCATATGT
728339 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
728367 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
*
728396 TCATGTAGCTCATATCATGTTCTC
1 TCATGTAGCTCATGTCAT-TTCTC
728420 ATATCACATA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
28 7 0.14
29 38 0.76
30 5 0.10
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Done.