Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6287495
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 33
Found at i:1181133 original size:30 final size:30
Alignment explanation
Indices: 1181089--1181170 Score: 148
Period size: 30 Copynumber: 2.8 Consensus size: 30
1181079 AAAAATTAAG
*
1181089 TAATTAAT-TAAAAAAATCAAATATTTTAT
1 TAATTAATCTAAAAAATTCAAATATTTTAT
1181118 TAATTAATCTAAAAAATTCAAATATTTTAT
1 TAATTAATCTAAAAAATTCAAATATTTTAT
1181148 TAATTAATCTAAAAAATTCAAAT
1 TAATTAATCTAAAAAATTCAAAT
1181171 TTTAAATAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 8 0.16
30 43 0.84
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (30 bp):
TAATTAATCTAAAAAATTCAAATATTTTAT
Found at i:1181481 original size:21 final size:21
Alignment explanation
Indices: 1181455--1181657 Score: 197
Period size: 21 Copynumber: 9.8 Consensus size: 21
1181445 TTTCCAAATT
1181455 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
1181476 CGTTGCAATAATCCAAGTT--
1 CGTTGCGATAGTCCAAGTTCG
*
1181495 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* * *
1181516 CGTTGTGATTTATTCCAAATT--
1 CGTTGCGA--TAGTCCAAGTTCG
1181537 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
1181558 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
1181579 CGTTGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
1181600 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
* *
1181621 CGTTGCGATTTATTCCAAATT--
1 CGTTGCGA--TAGTCCAAGTTCG
1181642 CGTTGCGATAGTCCAA
1 CGTTGCGATAGTCCAA
1181658 AATCACAACG
Statistics
Matches: 149, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
19 41 0.28
21 83 0.56
23 25 0.17
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (21 bp):
CGTTGCGATAGTCCAAGTTCG
Found at i:1181573 original size:63 final size:63
Alignment explanation
Indices: 1181476--1181629 Score: 249
Period size: 63 Copynumber: 2.5 Consensus size: 63
1181466 TCCAAGTTCG
* * *
1181476 CGTTGCAATAATCCAAGTT--CGTTGCGATAGTCGAAGTTCGCGTTGTGATTTATTCCAAATT
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
*
1181537 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTT
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
*
1181600 CGTTGCGATAGTCGAAGTTCGCGTTGCGAT
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGAT
1181630 TTATTCCAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
61 17 0.20
63 69 0.80
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (63 bp):
CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT
Found at i:1182564 original size:42 final size:42
Alignment explanation
Indices: 1182505--1182678 Score: 230
Period size: 42 Copynumber: 4.2 Consensus size: 42
1182495 TGCGATTTTG
1182505 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
1182547 GACTATCGCAACGAATTTGTAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
1182589 GACTATCGCAACAAATTTGG-A-AAATCGCAACACGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * *
1182629 GACTATCGCAACGCGAACTTGGACT--ATCGCAATGCGAACTTG
1 GACTATCGCAA--CGAATTTGGAATAAATCGCAACGCGAACTTC
1182671 GACTATCG
1 GACTATCG
1182679 GAATGCAAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
40 28 0.24
41 1 0.01
42 87 0.75
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:1182638 original size:21 final size:21
Alignment explanation
Indices: 1182502--1182678 Score: 159
Period size: 21 Copynumber: 8.5 Consensus size: 21
1182492 CGTTGCGATT
*
1182502 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
*
1182521 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
* *
1182544 TTCGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
* *
1182563 TTGTAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
* *
1182586 TTGGACTATCGCAA--CAAAT
1 TTGGACTATCGCAACGCGAAC
** *
1182605 TTGGAAAATCGCAACACGAAC
1 TTGGACTATCGCAACGCGAAC
*
1182626 TTCGACTATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAAC
*
1182647 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAACGCGAAC
1182668 TTGGACTATCG
1 TTGGACTATCG
1182679 GAATGCAAAT
Statistics
Matches: 125, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
19 29 0.23
21 78 0.62
23 18 0.14
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (21 bp):
TTGGACTATCGCAACGCGAAC
Found at i:1182641 original size:82 final size:83
Alignment explanation
Indices: 1182502--1182678 Score: 252
Period size: 82 Copynumber: 2.1 Consensus size: 83
1182492 CGTTGCGATT
* * *
1182502 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA-CGAATTTG
1 TTGGACTATCGCAACAAATTTGGAATAAATCGCAACACGAACTTCGACTATCGCAACCGAACTTG
*
1182566 TAATAAATCGCAACGCGAAC
66 GAAT--ATCGCAACGCGAAC
1182586 TTGGACTATCGCAACAAATTTGG-A-AAATCGCAACACGAACTTCGACTATCGCAACGCGAACTT
1 TTGGACTATCGCAACAAATTTGGAATAAATCGCAACACGAACTTCGACTATCGCAAC-CGAACTT
* *
1182649 GGACTATCGCAATGCGAAC
65 GGAATATCGCAACGCGAAC
1182668 TTGGACTATCG
1 TTGGACTATCG
1182679 GAATGCAAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
82 53 0.62
83 1 0.01
84 31 0.36
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (83 bp):
TTGGACTATCGCAACAAATTTGGAATAAATCGCAACACGAACTTCGACTATCGCAACCGAACTTG
GAATATCGCAACGCGAAC
Found at i:1183778 original size:3 final size:3
Alignment explanation
Indices: 1183766--1183800 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
1183756 TTTAGCTGCC
1183766 ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1183801 CAAACACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1184743 original size:3 final size:3
Alignment explanation
Indices: 1184737--1184801 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
1184727 TCCATTTGTT
* *
1184737 TTA TTA TGTTA TTA TT- TTA TTTA TCA CTA TTA TTA TT- TTA TTA TTA
1 TTA TTA T-T-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1184783 TTA TTAA TTA ATA TTA TTA
1 TTA TT-A TTA TTA TTA TTA
1184802 CAAACAGATC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
2 4 0.08
3 36 0.72
4 8 0.16
5 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:1184769 original size:29 final size:30
Alignment explanation
Indices: 1184737--1184801 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
1184727 TCCATTTGTT
* *
1184737 TTATTATGTTATTATT-TTATTTATCACTA
1 TTATTATGTTATTATTATTATTAATCAATA
* *
1184766 TTATTATTTTATTATTATTATTAATTAATA
1 TTATTATGTTATTATTATTATTAATCAATA
1184796 TTATTA
1 TTATTA
1184802 CAAACAGATC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (30 bp):
TTATTATGTTATTATTATTATTAATCAATA
Found at i:1184776 original size:17 final size:18
Alignment explanation
Indices: 1184746--1184788 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1184736 TTTATTATGT
*
1184746 TATTATTTTATTTATCAC
1 TATTATTATATTTATCAC
* *
1184764 TATTATTAT-TTTATTAT
1 TATTATTATATTTATCAC
1184781 TATTATTA
1 TATTATTA
1184789 ATTAATATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTATTATATTTATCAC
Found at i:1190302 original size:15 final size:15
Alignment explanation
Indices: 1190282--1190313 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1190272 GATCAATACC
1190282 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
1190297 TTTTGCATACATTCA
1 TTTTGCATACATGCA
1190312 TT
1 TT
1190314 ATTTATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:1194575 original size:20 final size:20
Alignment explanation
Indices: 1194552--1194594 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1194542 AATCCACCAC
*
1194552 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
1194572 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
1194592 ATG
1 ATG
1194595 GGCTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:1197222 original size:19 final size:20
Alignment explanation
Indices: 1197198--1197236 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1197188 AGAGGAAACT
1197198 AGAAAGTG-AAAGTAAAAAG
1 AGAAAGTGAAAAGTAAAAAG
1197217 AGAAAGTGAAAAGTAAAAAG
1 AGAAAGTGAAAAGTAAAAAG
1197237 TAAGTGGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.64, C:0.00, G:0.26, T:0.10
Consensus pattern (20 bp):
AGAAAGTGAAAAGTAAAAAG
Found at i:1204938 original size:10 final size:10
Alignment explanation
Indices: 1204925--1204967 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
1204915 ATGCAACTAT
1204925 ATGCTCCTAA
1 ATGCTCCTAA
1204935 ATGCAT-CTAA
1 ATGC-TCCTAA
*
1204945 ATGGTCCTAA
1 ATGCTCCTAA
*
1204955 ATGGTCCTAA
1 ATGCTCCTAA
1204965 ATG
1 ATG
1204968 GGCTCTTAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 1 0.03
10 28 0.93
11 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (10 bp):
ATGCTCCTAA
Found at i:1204938 original size:20 final size:20
Alignment explanation
Indices: 1204915--1204957 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1204905 AATCCTCCAC
*
1204915 ATGCAACTATATGCTCCTAA
1 ATGCAACTAAATGCTCCTAA
* *
1204935 ATGCATCTAAATGGTCCTAA
1 ATGCAACTAAATGCTCCTAA
1204955 ATG
1 ATG
1204958 GTCCTAAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
ATGCAACTAAATGCTCCTAA
Found at i:1204968 original size:10 final size:10
Alignment explanation
Indices: 1204941--1204968 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
1204931 CTAAATGCAT
1204941 CTAAATGGTC
1 CTAAATGGTC
1204951 CTAAATGGTC
1 CTAAATGGTC
1204961 CTAAATGG
1 CTAAATGG
1204969 GCTCTTAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (10 bp):
CTAAATGGTC
Found at i:1209821 original size:17 final size:17
Alignment explanation
Indices: 1209801--1209839 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
1209791 GAAAAATAAT
1209801 AAAAAAAAAAAAAAGAA
1 AAAAAAAAAAAAAAGAA
* *
1209818 AAAAGAAAGAAAAAGAA
1 AAAAAAAAAAAAAAGAA
1209835 AAAAA
1 AAAAA
1209840 TTTTGAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAAGAA
Found at i:1211577 original size:113 final size:109
Alignment explanation
Indices: 1211378--1212003 Score: 514
Period size: 120 Copynumber: 5.5 Consensus size: 109
1211368 AGAACTCAAG
* * **
1211378 AAGAAATTCATAATGAGAAGAATTTGTTCAAATTTTTTGTTTGAATTCATCACCCAATGGATCAA
1 AAGAAGTTCATAATGAGAAGAACTTGTTC-AACCTTTTGTTTG-ATTCATCA--CAATGGATCAA
* * * *
1211443 CATTGCCAGATAGAGTTCATAATGAGAAGAACTCATCTGAATAAGGAAA
62 CTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA-AAGGAAA
* *
1211492 AAGAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTGTTTGAATTCATTACTTAATGGATCAAC
1 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTG-ATTCATCAC--AATGGATCAAC
* * * *
1211557 TTCTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAG
63 TTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAA
* ** * *
1211604 AAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCTATCACAGAAGGAGATAGA
1 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTGATTC-ATCAC------A-ATGGA
1211669 TCAACATAAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAA
58 T---C---AACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA-AAGGAAA
* * *
1211728 AAGAAGTTCATAATAAGAAGAACTTGTTTAACCTTTTGTTTGA---AT-TC-ATGGATCAACTTT
1 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTGATTCATCACAATGGATCAACTTT
* * *
1211788 TCCAAAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAA
66 TCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAA
* * * * *
1211832 AAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTATATGACTCTATCACAGAAGAAGATAGA
1 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTGATTC-ATCAC------A-ATGGA
** * * *
1211897 TCAGCATCAATTTTCCA-A-AGTGTTCATATTGAGAAGAACTCATTTGAAAAAGG-AT
58 TCA--A-C--TTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG-AAAAGGAAA
* *
1211952 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAAT-TTTAATTCATCACA
1 AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTT-TTGTTTGATTCATCACA
1212004 TATTGAAGTA
Statistics
Matches: 421, Mismatches: 56, Indels: 71
0.77 0.10 0.13
Matches are distributed among these distances:
104 44 0.10
105 41 0.10
108 3 0.01
109 1 0.00
111 9 0.02
112 47 0.11
113 65 0.15
114 26 0.06
116 1 0.00
117 12 0.03
119 7 0.02
120 67 0.16
121 7 0.02
122 7 0.02
123 41 0.10
124 43 0.10
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (109 bp):
AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTGATTCATCACAATGGATCAACTTT
TCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAA
Found at i:1211797 original size:105 final size:104
Alignment explanation
Indices: 1211677--1211868 Score: 330
Period size: 105 Copynumber: 1.8 Consensus size: 104
1211667 GATCAACATA
*
1211677 AACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAAAAGAAGTTCATAAT
1 AACTTTTCCAAAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAAAAGAAGTTCATAAT
*
1211742 AAGAAGAACTTGTTTAACCTTTTGTTTGAATTCATGGATC
65 AAGAAGAACTTGTTCAACCTTTTGTTTGAATTCATGGATC
* *
1211782 AACTTTTCCAAAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAAAAGAAGTTCATAATG
1 AACTTTTCCAAAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATA
*
1211847 AGAAGAGCTTGTTCAACCTTTT
66 AGAAGAACTTGTTCAACCTTTT
1211869 ATATGACTCT
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
104 40 0.49
105 42 0.51
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (104 bp):
AACTTTTCCAAAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATA
AGAAGAACTTGTTCAACCTTTTGTTTGAATTCATGGATC
Found at i:1211864 original size:228 final size:229
Alignment explanation
Indices: 1211456--1211986 Score: 811
Period size: 228 Copynumber: 2.3 Consensus size: 229
1211446 TGCCAGATAG
*
1211456 AGTTCATAATGAGAAGAACTCATCTGAATAAGGAAAAAGAAGTTCATAATGAGAAGAACTTGTTT
1 AGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAAAAGAAGTTCATAATGAGAAGAACTTGTTT
*
1211521 AACCTTTTGTTTGAATTCATTACTTAATGGATCAACTTCTCCAGAGAAAGTTCATAATGAGAAGA
66 AACCTTTTGTTTGAA-T-ATTAC-T-ATGGATCAACTTCTCCAAAGAAAGTTCATAATGAGAAGA
* *
1211586 ACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCT
127 ACTTATCTGAAGAGGAAAAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTACATGACTCT
*
1211651 ATCACAGAAGGAGATAGATCAACATAAACTTTTCCAGAGAA
192 ATCACAGAAGAAGATAGATCAACATAAA-TTTTCCA-A-AA
* *
1211692 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAAAAGAAGTTCATAATAAGAAGAACTTGTTT
1 AGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAAAAGAAGTTCATAATGAGAAGAACTTGTTT
*
1211757 AACCTTTTGTTTG-A-ATT-C-ATGGATCAACTTTTCCAAAGAAAGTTCATAATGAGAAGAACTT
66 AACCTTTTGTTTGAATATTACTATGGATCAACTTCTCCAAAGAAAGTTCATAATGAGAAGAACTT
*
1211818 ATCTGAAGAGGAAAAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTATATGACTCTATCA
131 ATCTGAAGAGGAAAAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTACATGACTCTATCA
* * *
1211883 CAGAAGAAGATAGATCAGCATCAATTTTCCAAAG
196 CAGAAGAAGATAGATCAACATAAATTTTCCAAAA
* * * * *
1211917 TGTTCATATTGAGAAGAACTCATTTGAAAAAGG-ATAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAAAAGAAGTTCATAATGAGAAGAACTTGTTT
1211981 AACCTT
66 AACCTT
1211987 AATTTTAATT
Statistics
Matches: 277, Mismatches: 18, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
224 34 0.12
225 30 0.11
226 1 0.00
227 7 0.03
228 124 0.45
231 1 0.00
232 3 0.01
235 1 0.00
236 76 0.27
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (229 bp):
AGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAAAAGAAGTTCATAATGAGAAGAACTTGTTT
AACCTTTTGTTTGAATATTACTATGGATCAACTTCTCCAAAGAAAGTTCATAATGAGAAGAACTT
ATCTGAAGAGGAAAAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTACATGACTCTATCA
CAGAAGAAGATAGATCAACATAAATTTTCCAAAA
Found at i:1212247 original size:3 final size:3
Alignment explanation
Indices: 1212235--1212312 Score: 88
Period size: 3 Copynumber: 26.0 Consensus size: 3
1212225 TTTTATCCAT
* * *
1212235 TTA TTT TTA TTA -TA TTA TTA TTA TT- TTA TTTA TCA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
1212279 TTA TTA TTA TTA TTA TTA TTAA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
1212313 CAAACAGATC
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
2 4 0.06
3 53 0.84
4 6 0.10
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:1224450 original size:23 final size:23
Alignment explanation
Indices: 1224424--1224472 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
1224414 TGGTGGTTGG
*
1224424 TTTAATGG-ATGTTTAAACTTTAT
1 TTTAATGGTATATTT-AACTTTAT
*
1224447 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
1224470 TTT
1 TTT
1224473 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:1224983 original size:11 final size:11
Alignment explanation
Indices: 1224967--1224998 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
1224957 TTCTTTTCAT
*
1224967 TTTATTTGCTG
1 TTTATTTACTG
1224978 TTTATTTACTG
1 TTTATTTACTG
1224989 TTTATTTACT
1 TTTATTTACT
1224999 ATTTTTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.09, G:0.09, T:0.66
Consensus pattern (11 bp):
TTTATTTACTG
Found at i:1226500 original size:15 final size:15
Alignment explanation
Indices: 1226480--1226523 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
1226470 TCAACTTTGT
1226480 AGGCAATTACAATCA
1 AGGCAATTACAATCA
*
1226495 AGGCAACTACAATCA
1 AGGCAATTACAATCA
*
1226510 AGGCAATAACAATC
1 AGGCAATTACAATC
1226524 CTTACTCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.48, C:0.23, G:0.14, T:0.16
Consensus pattern (15 bp):
AGGCAATTACAATCA
Found at i:1232178 original size:24 final size:24
Alignment explanation
Indices: 1232151--1232203 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
1232141 ATGACCGACT
* **
1232151 CCTGATCATCACTGTTCTGAGACA
1 CCTGATCAGCACCATTCTGAGACA
*
1232175 CCTGATCAGCACCATTCTGAGACC
1 CCTGATCAGCACCATTCTGAGACA
1232199 CCTGA
1 CCTGA
1232204 ATATCTGCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (24 bp):
CCTGATCAGCACCATTCTGAGACA
Found at i:1234246 original size:23 final size:23
Alignment explanation
Indices: 1234216--1234264 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
1234206 TGGTGGTTGG
*
1234216 TTTAATGG-ATGTTTAAACTTTAT
1 TTTAATGGTATATTT-AACTTTAT
*
1234239 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
1234262 TTT
1 TTT
1234265 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:1234735 original size:11 final size:11
Alignment explanation
Indices: 1234719--1234749 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
1234709 TTCTTTTCAT
*
1234719 TTTATTTGCTG
1 TTTATTTACTG
1234730 TTTATTTACTG
1 TTTATTTACTG
1234741 TTTATTTAC
1 TTTATTTAC
1234750 CATTTTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.10, G:0.10, T:0.65
Consensus pattern (11 bp):
TTTATTTACTG
Found at i:1239219 original size:4 final size:4
Alignment explanation
Indices: 1239210--1239252 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
1239200 ACTGTTCAAC
1239210 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT
1239253 ACATGCATGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:1240042 original size:21 final size:21
Alignment explanation
Indices: 1240016--1240062 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
1240006 CATGCAAAGA
1240016 TAGACAAAATCACTGAATTAG
1 TAGACAAAATCACTGAATTAG
*
1240037 TAGACAAAATCATTGAATTAG
1 TAGACAAAATCACTGAATTAG
1240058 TAGAC
1 TAGAC
1240063 TATCTTAAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.26
Consensus pattern (21 bp):
TAGACAAAATCACTGAATTAG
Found at i:1241538 original size:21 final size:21
Alignment explanation
Indices: 1241522--1241561 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1241512 ACAAATTGAT
*
1241522 AACAA-TCGCGCGTAAATCGC
1 AACAAGTCGCGCGTAAATTGC
*
1241542 CACAAGTCGCGCGTAAATTG
1 AACAAGTCGCGCGTAAATTG
1241562 GTCGAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.28, G:0.23, T:0.17
Consensus pattern (21 bp):
AACAAGTCGCGCGTAAATTGC
Found at i:1244717 original size:19 final size:17
Alignment explanation
Indices: 1244681--1244719 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
1244671 ATCATTTTCT
1244681 TTTAATTTATTTTAATC
1 TTTAATTTATTTTAATC
*
1244698 TTTATATTTCTTTATAATC
1 TTTA-ATTTATTT-TAATC
1244717 TTT
1 TTT
1244720 CAAACCCCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 7 0.37
19 8 0.42
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTAATTTATTTTAATC
Found at i:1245198 original size:100 final size:100
Alignment explanation
Indices: 1245059--1245288 Score: 356
Period size: 100 Copynumber: 2.3 Consensus size: 100
1245049 AACTATGTGT
1245059 CAAGGCCTTAACACTCGA-GAGGGGTAGGTTGGCAGGTGTGATGTCCTTATCCGGATACACAACA
1 CAAGGCC-TAACACTC-ACGAGGGGTAGGTTGGCAGGTGTGATGTCCTTATCCGGATACACAACA
*
1245123 GTAAGTGCGCGAGGTACTTCGATGGCTAATTTGGGTA
64 ATAAGTGCGCGAGGTACTTCGATGGCTAATTTGGGTA
* *
1245160 CAAGGTCTAACACTCACGAGGGGT-GTGTTGGCAGGTGTGATGTCCTTATCCGGATACACCACAA
1 CAAGGCCTAACACTCACGAGGGGTAG-GTTGGCAGGTGTGATGTCCTTATCCGGATACACAACAA
* *
1245224 TAATTGCGCGAGGTATTTCGATGGCTAATTTGGGTA
65 TAAGTGCGCGAGGTACTTCGATGGCTAATTTGGGTA
* *
1245260 CGAGGCCTAACACTCGCGAGGGGTAGGTT
1 CAAGGCCTAACACTCACGAGGGGTAGGTT
1245289 AGCCGGACGT
Statistics
Matches: 118, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
99 2 0.02
100 109 0.92
101 7 0.06
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (100 bp):
CAAGGCCTAACACTCACGAGGGGTAGGTTGGCAGGTGTGATGTCCTTATCCGGATACACAACAAT
AAGTGCGCGAGGTACTTCGATGGCTAATTTGGGTA
Found at i:1246382 original size:22 final size:21
Alignment explanation
Indices: 1246324--1246383 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 21
1246314 TTTAAAGGCT
*
1246324 TATTAAAAATAAAAATAAAAA
1 TATTAAATATAAAAATAAAAA
*
1246345 TAATTTAAAT-TCAAAATATTAAAA
1 T-A-TTAAATAT-AAAA-ATAAAAA
1246369 TATTAAATATAAAAA
1 TATTAAATATAAAAA
1246384 ACAAAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
21 2 0.06
22 12 0.38
23 11 0.34
24 7 0.22
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
TATTAAATATAAAAATAAAAA
Found at i:1247144 original size:27 final size:28
Alignment explanation
Indices: 1247074--1247147 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 28
1247064 AAATAATTTT
* * *
1247074 TTTAAAAAATCAA-ATAAGCTCTTAAAC
1 TTTAAAAAATCAATTTAAGCCCTCAAAC
1247101 TTTAAAAAAAATCAATTTAA-CCCTCAAAC
1 TTT--AAAAAATCAATTTAAGCCCTCAAAC
1247130 TTTAAAAAATCAATTTAA
1 TTTAAAAAATCAATTTAA
1247148 TTCAACTGTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 18 0.44
29 20 0.49
30 3 0.07
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (28 bp):
TTTAAAAAATCAATTTAAGCCCTCAAAC
Found at i:1250503 original size:20 final size:20
Alignment explanation
Indices: 1250478--1250519 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
1250468 CGTAACAGAT
1250478 TAAAATTAGTAGATAATGTG
1 TAAAATTAGTAGATAATGTG
1250498 TAAAATTAGTAGATAATGTG
1 TAAAATTAGTAGATAATGTG
1250518 TA
1 TA
1250520 CTTGAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.36
Consensus pattern (20 bp):
TAAAATTAGTAGATAATGTG
Found at i:1251432 original size:21 final size:21
Alignment explanation
Indices: 1251383--1251456 Score: 114
Period size: 21 Copynumber: 3.6 Consensus size: 21
1251373 GTTTCCAGAT
* *
1251383 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
1251404 TC-CAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
1251424 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
*
1251445 TCGTAATGCGAA
1 TCGCAATGCGAA
1251457 TATGTAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
20 18 0.37
21 31 0.63
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:1251468 original size:41 final size:41
Alignment explanation
Indices: 1251383--1251475 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
1251373 GTTTCCAGAT
* *
1251383 TCGCAACGCGAACTTCGACTATCCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTATCCAATGCGAACTTGGACAA
* * *
1251424 TCGCAATGCGAACTTGGACTATCGTAATGCGAA-TATGTA-AA
1 TCGCAATGCGAACTTCGACTATC-CAATGCGAACT-TGGACAA
1251465 TCGCAATGCGA
1 TCGCAATGCGA
1251476 TAGTCGAAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 34 0.76
42 11 0.24
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (41 bp):
TCGCAATGCGAACTTCGACTATCCAATGCGAACTTGGACAA
Found at i:1251584 original size:21 final size:21
Alignment explanation
Indices: 1251554--1251671 Score: 109
Period size: 21 Copynumber: 5.6 Consensus size: 21
1251544 GATTTACATA
*
1251554 TTCGCATTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCGAAG
* * *
1251575 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCGAAG
1251598 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCGAAG
* * *
1251617 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCGAAG
1251640 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCGAAG
1251659 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
1251672 TTATTCCAAA
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
19 16 0.21
21 44 0.58
23 16 0.21
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.35
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCGAAG
Found at i:1251611 original size:42 final size:42
Alignment explanation
Indices: 1251560--1251695 Score: 272
Period size: 42 Copynumber: 3.2 Consensus size: 42
1251550 CATATTCGCA
1251560 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1251602 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1251644 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1251686 TTGCGATAGT
1 TTGCGATAGT
1251696 ATTGCATTTG
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 94 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.36
Consensus pattern (42 bp):
TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
Found at i:1251687 original size:21 final size:21
Alignment explanation
Indices: 1251579--1251692 Score: 110
Period size: 21 Copynumber: 5.4 Consensus size: 21
1251569 TCGAAGTTCG
1251579 CGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
* * *
1251600 CGTTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAATT
1251619 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
* * *
1251642 CGTTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAATT
1251661 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
1251684 CGTTGCGAT
1 CGTTGCGAT
1251693 AGTATTGCAT
Statistics
Matches: 73, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
19 16 0.22
21 41 0.56
23 16 0.22
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAATT
Found at i:1252543 original size:21 final size:21
Alignment explanation
Indices: 1252519--1252695 Score: 168
Period size: 21 Copynumber: 8.4 Consensus size: 21
1252509 ATGCAATACT
*
1252519 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
1252540 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
1252561 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
1252582 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAACTTGGAATAA
*
1252603 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
1252624 ATAGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
1252645 ATCGCAACGTGAACTTCGACT--
1 ATCGCAAC--GAACTTGGAATAA
*
1252666 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
1252687 ATCGCAACG
1 ATCGCAACG
1252696 CGAACTTCGA
Statistics
Matches: 128, Mismatches: 16, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
19 28 0.22
21 72 0.56
23 28 0.22
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:1252577 original size:42 final size:42
Alignment explanation
Indices: 1252516--1252632 Score: 207
Period size: 42 Copynumber: 2.8 Consensus size: 42
1252506 CAAATGCAAT
1252516 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
* *
1252558 ACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
*
1252600 ACTATCGCAACGAATTTGGAATAAATAGCAACG
1 ACTATCGCAACGAATTTGGAATAAATCGCAACG
1252633 AATTTGGAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (42 bp):
ACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG
Found at i:1252631 original size:63 final size:63
Alignment explanation
Indices: 1252564--1252695 Score: 228
Period size: 63 Copynumber: 2.1 Consensus size: 63
1252554 TTCGACTATC
*
1252564 GCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATA
1 GCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
* * *
1252627 GCAACGAATTTGGAATAAATCGCAACGTGAACTTCGACTATCGCAACGAATTTGGAATAAATC
1 GCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
1252690 GCAACG
1 GCAACG
1252696 CGAACTTCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (63 bp):
GCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
Found at i:1252701 original size:42 final size:42
Alignment explanation
Indices: 1252627--1252714 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
1252617 GGAATAAATA
*
1252627 GCAACGAATTTGGAATAAATCGCAACGTGAACTTCGACTATC
1 GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATC
1252669 GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATC
1 GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATC
1252711 GCAA
1 GCAA
1252715 TGCGAATATG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (42 bp):
GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATC
Found at i:1252708 original size:105 final size:105
Alignment explanation
Indices: 1252522--1252714 Score: 359
Period size: 105 Copynumber: 1.8 Consensus size: 105
1252512 CAATACTATC
1252522 GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGC
1 GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGC
*
1252587 AACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATA
66 AACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
* *
1252627 GCAACGAATTTGGAATAAATCGCAACGTGAACTTCGACTATCGCAACGAATTTGGAATAAATCGC
1 GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGC
1252692 AACGCGAACTTCGACTATCGCAA
66 AACGCGAACTTCGACTATCGCAA
1252715 TGCGAATATG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 85 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (105 bp):
GCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGC
AACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
Found at i:1252711 original size:21 final size:21
Alignment explanation
Indices: 1252519--1252720 Score: 134
Period size: 21 Copynumber: 9.6 Consensus size: 21
1252509 ATGCAATACT
*
1252519 ATCGCAA-CGAATTTGGAATAA
1 ATCGCAAGCGAACTTGGAAT-A
* *
1252540 ATCGCAACGCGAACTTCGACT-
1 ATCGCAA-GCGAACTTGGAATA
1252561 ATCGCAA-CGAACTTGGAATAA
1 ATCGCAAGCGAACTTGGAAT-A
*
1252582 ATCGCAACGCGAACTTGGACT-
1 ATCGCAA-GCGAACTTGGAATA
*
1252603 ATCGCAA-CGAATTTGGAATAA
1 ATCGCAAGCGAACTTGGAAT-A
* *
1252624 ATAGCAA-CGAATTTGGAATAA
1 ATCGCAAGCGAACTTGGAAT-A
* * *
1252645 ATCGCAACGTGAACTTCGACT-
1 ATCGCAA-GCGAACTTGGAATA
*
1252666 ATCGCAA-CGAATTTGGAATAA
1 ATCGCAAGCGAACTTGGAAT-A
* *
1252687 ATCGCAACGCGAACTTCGACT-
1 ATCGCAA-GCGAACTTGGAATA
1252708 ATCGCAATGCGAA
1 ATCGCAA-GCGAA
1252721 TATGTAAATC
Statistics
Matches: 145, Mismatches: 22, Indels: 28
0.74 0.11 0.14
Matches are distributed among these distances:
19 28 0.19
21 80 0.55
23 37 0.26
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAAGCGAACTTGGAATA
Found at i:1252712 original size:63 final size:62
Alignment explanation
Indices: 1252564--1252720 Score: 199
Period size: 63 Copynumber: 2.5 Consensus size: 62
1252554 TTCGACTATC
* *
1252564 GCAACGAACTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATA
1 GCAACGAACTTCGAAT-AATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
* * * *
1252627 GCAACGAATTTGGAATAAATCGCAACGTGAACTTCGACTATCGCAACGAATTTGGAATAAATC
1 GCAACGAACTTCGAAT-AATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
* *
1252690 GCAACGCGAACTTCGACT-ATCGCAATGCGAA
1 GCAA--CGAACTTCGAATAATCGCAACGCGAA
1252721 TATGTAAATC
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
63 74 0.89
65 9 0.11
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (62 bp):
GCAACGAACTTCGAATAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATA
Found at i:1252801 original size:21 final size:20
Alignment explanation
Indices: 1252777--1252936 Score: 85
Period size: 21 Copynumber: 7.6 Consensus size: 20
1252767 AATTTGGAAA
1252777 ATCGCAACGCGAACTTCGACT
1 ATCGCAA-GCGAACTTCGACT
*
1252798 ATCGCAATGCGAACTTTGACT
1 ATCGCAA-GCGAACTTCGACT
* * *
1252819 ATCGCAA-CGAATTTGGAAT
1 ATCGCAAGCGAACTTCGACT
* *
1252838 AAATCGCAA-CGAA-TTTGAAAT
1 --ATCGCAAGCGAACTTCG-ACT
* * *
1252859 AAATCGCAA-CGAATTTGGAAT
1 --ATCGCAAGCGAACTTCGACT
*
1252880 AAATCGCAACACGAACTTCGACT
1 --ATCGCAA-GCGAACTTCGACT
*
1252903 ATCGCAACGCGAACTTAGACT
1 ATCGCAA-GCGAACTTCGACT
1252924 ATCGCAATGCGAA
1 ATCGCAA-GCGAA
1252937 TATGTAAATC
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
19 9 0.08
20 3 0.03
21 96 0.80
22 3 0.03
23 9 0.08
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (20 bp):
ATCGCAAGCGAACTTCGACT
Found at i:1252844 original size:42 final size:40
Alignment explanation
Indices: 1252798--1252911 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 40
1252788 AACTTCGACT
1252798 ATCGCAATGCGAACTTTGACTATCGCAACGAATTTGGAATAA
1 ATCGCAA--CGAACTTTGACTATCGCAACGAATTTGGAATAA
*
1252840 ATCGCAACGAA-TTTGAAATAAATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTTG-ACT--ATCGCAACGAATTTGGAATAA
*
1252882 ATCGCAACACGAACTTCGACTATCGCAACG
1 ATCGC-A-ACGAACTTTGACTATCGCAACG
1252912 CGAACTTAGA
Statistics
Matches: 63, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
39 4 0.06
40 6 0.10
42 42 0.67
43 1 0.02
44 7 0.11
45 3 0.05
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (40 bp):
ATCGCAACGAACTTTGACTATCGCAACGAATTTGGAATAA
Found at i:1252935 original size:216 final size:214
Alignment explanation
Indices: 1252582--1252974 Score: 601
Period size: 216 Copynumber: 1.8 Consensus size: 214
1252572 CTTGGAATAA
*
1252582 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATAGCAACGAATTTGGAATAAAT
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATAGCAACGAATTTGAAATAAAT
* * * *
1252647 CGCAACGTGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCG
66 CGCAACG-GAACTTCGAATATCGCAACGAACTTCGAAT-AATCGCAACGCGAACTTAGACTATCG
*
1252712 CAATGCGAATATGTAAATCGCAATGCTATAGTCAAAGTTCGCGTTGCGATAGTCGAATTTGGAAA
129 CAATGCGAATATGTAAATCGCAATGCGATAGTCAAAGTTCGCGTTGCGATAGTCGAATTTGGAAA
1252777 ATCGCAACGCGAACTTCGACT
194 ATCGCAACGCGAACTTCGACT
* * *
1252798 ATCGCAATGCGAACTTTGACTATCGCAACGAATTTGGAATAAATCGCAACGAATTTGAAATAAAT
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATAGCAACGAATTTGAAATAAAT
* * *
1252863 CGCAAC-GAATTTGGAATAAATCGCAACACGAACTTCGACT-ATCGCAACGCGAACTTAGACTAT
66 CGCAACGGAACTTCGAAT--ATCGC-A-ACGAACTTCGAATAATCGCAACGCGAACTTAGACTAT
*
1252926 CGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTCGCGTTGC
127 CGCAATGCGAATATGTAAATCGCAATGCGATAGTCAAAGTTCGCGTTGC
1252975 AAATCTGGAA
Statistics
Matches: 160, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
214 8 0.05
216 141 0.88
217 1 0.01
218 10 0.06
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (214 bp):
ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATAGCAACGAATTTGAAATAAAT
CGCAACGGAACTTCGAATATCGCAACGAACTTCGAATAATCGCAACGCGAACTTAGACTATCGCA
ATGCGAATATGTAAATCGCAATGCGATAGTCAAAGTTCGCGTTGCGATAGTCGAATTTGGAAAAT
CGCAACGCGAACTTCGACT
Found at i:1252957 original size:195 final size:192
Alignment explanation
Indices: 1252580--1252963 Score: 487
Period size: 195 Copynumber: 2.0 Consensus size: 192
1252570 AACTTGGAAT
*
1252580 AAATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATAGCAACGAATTTGGAATAA
1 AAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAAT-AATAGCAACGAATTTGGAATAA
* *
1252645 ATCGCAACGTGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTAT
65 ATCGCAACG-GAACTTCGAATATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGACTAT
* * **
1252710 CGCAATGCGAATATGTAAATCGCAATGCTATAGTCAAAGTTCGCGTTGCGATAGTCGAATTTGGA
129 CGCAACGCGAATATGTAAATCGCAATGCAATAGTCAAAG-TCGCAATGCGATAGTCGAATTTGGA
* *
1252775 AAATCGCAACGCGAACTTCGACTATCGCAATGCGAACTTT-GACT-ATCGCAACGAATTTGGAAT
1 AAATCGCAACGCGAACTTCGACTATCGCAA--CGAA-TTTGGAATAATAGCAACGAATTTGGAAT
*
1252838 AAATCGCAAC-GAA-TTTGAAATAAATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGA
63 AAATCGCAACGGAACTTCG-AAT--ATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGA
*
1252901 CTATCGCAACGCGAACT-TAG-ACTATCGCAATGCGAATATGT-AAA-TCGCAATGCGATAGTCG
125 CTATCGCAACGCGAA-TAT-GTA-AATCGCAATGC-AATA-GTCAAAGTCGCAATGCGATAGTCG
1252962 AA
185 AA
1252964 GTTCGCGTTG
Statistics
Matches: 167, Mismatches: 11, Indels: 22
0.83 0.05 0.11
Matches are distributed among these distances:
192 3 0.02
193 5 0.03
195 129 0.77
196 12 0.07
197 13 0.08
198 5 0.03
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (192 bp):
AAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAATAGCAACGAATTTGGAATAAA
TCGCAACGGAACTTCGAATATCGCAACGAATTTGGAATAAATCGCAACACGAACTTCGACTATCG
CAACGCGAATATGTAAATCGCAATGCAATAGTCAAAGTCGCAATGCGATAGTCGAATTTGGA
Found at i:1256868 original size:21 final size:19
Alignment explanation
Indices: 1256844--1256895 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
1256834 CTTAGCATTT
*
1256844 TAAAAGTAAAAAACTTTAAAG
1 TAAAAGTAAAAAAC--GAAAG
1256865 TAAAAGTAAAGAAACGAAAG
1 TAAAAGTAAA-AAACGAAAG
1256885 TAAAAG-AAAAA
1 TAAAAGTAAAAA
1256896 GAGAAAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.07
19 3 0.10
20 10 0.34
21 10 0.34
22 4 0.14
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.15
Consensus pattern (19 bp):
TAAAAGTAAAAAACGAAAG
Found at i:1258810 original size:3 final size:3
Alignment explanation
Indices: 1258802--1258828 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1258792 AAATCTTTAC
1258802 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1258829 CAAATCTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:1263875 original size:18 final size:18
Alignment explanation
Indices: 1263852--1263894 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
1263842 GTAGACCTCG
*
1263852 AGAAGAAGAAC-GAGACAA
1 AGAAGAAG-ACGGAGAAAA
1263870 AGAAGAAGACGGAGAAAA
1 AGAAGAAGACGGAGAAAA
1263888 AGAAGAA
1 AGAAGAA
1263895 TGTTGGAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.63, C:0.07, G:0.30, T:0.00
Consensus pattern (18 bp):
AGAAGAAGACGGAGAAAA
Found at i:1268673 original size:19 final size:21
Alignment explanation
Indices: 1268651--1268693 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1268641 TAAAAAAATG
1268651 TTTTGT-TTTAAAT-TGTTGT
1 TTTTGTATTTAAATATGTTGT
* *
1268670 TTTTTTATTTAATTATGTTGT
1 TTTTGTATTTAAATATGTTGT
1268691 TTT
1 TTT
1268694 GAAGACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 6 0.30
21 9 0.45
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (21 bp):
TTTTGTATTTAAATATGTTGT
Found at i:1273335 original size:2 final size:2
Alignment explanation
Indices: 1273323--1273379 Score: 105
Period size: 2 Copynumber: 28.0 Consensus size: 2
1273313 TATTTTTATT
1273323 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1273366 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
1273380 ATTTGGCTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 52 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1274730 original size:19 final size:21
Alignment explanation
Indices: 1274703--1274743 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
1274693 TTTTGTATTA
1274703 CTATAATTA-TTTA-ATTTTT
1 CTATAATTATTTTATATTTTT
*
1274722 CTATTATTATTTTATATTTTT
1 CTATAATTATTTTATATTTTT
1274743 C
1 C
1274744 CTTCTCTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 4 0.21
21 7 0.37
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (21 bp):
CTATAATTATTTTATATTTTT
Found at i:1285579 original size:48 final size:49
Alignment explanation
Indices: 1285502--1285595 Score: 136
Period size: 48 Copynumber: 1.9 Consensus size: 49
1285492 AATACTTCGC
* ** *
1285502 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTTGAAAAAA-AAAAACGT
1 TTAGGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAACGT
*
1285550 TTAGGGTGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAA
1 TTAGGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAA
1285596 GAGAAAAAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 35 0.88
49 5 0.12
ACGTcount: A:0.47, C:0.15, G:0.23, T:0.15
Consensus pattern (49 bp):
TTAGGATGAAAACCCGAAAGGGCACCCTAAATTGAAAAAAGAAAAACGT
Found at i:1286515 original size:105 final size:105
Alignment explanation
Indices: 1286333--1287105 Score: 1433
Period size: 105 Copynumber: 7.4 Consensus size: 105
1286323 AGGTTTTACC
1286333 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1286398 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
* *
1286438 CAGAGCCAATTTCAACTTCACAATGAAGGATATTGGACTCCATACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1286503 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
* *
1286543 CAGAGCCAATCTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
1286608 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
1286648 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1286713 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
1286753 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
1286818 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
1286858 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
*
1286923 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
1286963 CAGAGCC-ATTTC-ACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
1287026 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
1287066 CAGAGCCAATTTCAACTTCACAACGAAGGGTATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
1287106 GAAACAACAC
Statistics
Matches: 650, Mismatches: 16, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
103 95 0.15
104 10 0.02
105 545 0.84
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
Found at i:1287394 original size:2 final size:2
Alignment explanation
Indices: 1287382--1287438 Score: 98
Period size: 2 Copynumber: 28.5 Consensus size: 2
1287372 TATTTTTATT
1287382 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1287424 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
1287439 TAATTGGCTT
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.02
2 50 0.94
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1288188 original size:17 final size:17
Alignment explanation
Indices: 1288163--1288195 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1288153 ATTTTGCCAC
*
1288163 CGATGACGGCGGCCGGG
1 CGATCACGGCGGCCGGG
1288180 CGATCACGGCGGCCGG
1 CGATCACGGCGGCCGG
1288196 CGAGGTGCGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.33, G:0.48, T:0.06
Consensus pattern (17 bp):
CGATCACGGCGGCCGGG
Found at i:1297554 original size:2 final size:2
Alignment explanation
Indices: 1297549--1297585 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1297539 TTTTTTAAAT
1297549 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1297586 TATTGTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1297940 original size:2 final size:2
Alignment explanation
Indices: 1297933--1298036 Score: 194
Period size: 2 Copynumber: 53.0 Consensus size: 2
1297923 TGCAAAATGA
1297933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1297974 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1298015 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
1298037 GCCATTTTGC
Statistics
Matches: 100, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
1 2 0.02
2 98 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1299923 original size:80 final size:82
Alignment explanation
Indices: 1299790--1299951 Score: 310
Period size: 80 Copynumber: 2.0 Consensus size: 82
1299780 TTGTTCAAAC
1299790 AAGATTATGCCGTTACAGCGTTAGCGTTGAACCCTCATGGTACATTAGTTTACTG-GGGTCGTCG
1 AAGATTATGCCGTTACAGCGTTAGCGTTGAACCCTCATGGTACATTAGTTTACTGTGGGTCGTCG
1299854 GAT-GGCTAGTTAACTT
66 GATGGGCTAGTTAACTT
1299870 AAGATTATGCCGTTACAGCGTTAGCGTTGAACCCTCATGGTACATTAGTTTACTGTGGGTCGTCG
1 AAGATTATGCCGTTACAGCGTTAGCGTTGAACCCTCATGGTACATTAGTTTACTGTGGGTCGTCG
1299935 GATGGGCTAGTTAACTT
66 GATGGGCTAGTTAACTT
1299952 TTGGGACTGT
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
80 55 0.69
81 12 0.15
82 13 0.16
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (82 bp):
AAGATTATGCCGTTACAGCGTTAGCGTTGAACCCTCATGGTACATTAGTTTACTGTGGGTCGTCG
GATGGGCTAGTTAACTT
Found at i:1307582 original size:20 final size:20
Alignment explanation
Indices: 1307557--1307683 Score: 123
Period size: 20 Copynumber: 6.3 Consensus size: 20
1307547 ATTTCCTAAT
1307557 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
1307577 TCGCAACGCGAAT-TGAAAAA
1 TCGCAATGCGAATACG-TAAA
*
1307597 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** *
1307617 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
1307638 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
1307658 TCGCAATGCGTAT-CTGTAAA
1 TCGCAATGCGAATAC-GTAAA
1307678 TCGCAA
1 TCGCAA
1307684 CGAGATTCTG
Statistics
Matches: 84, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.02
20 66 0.79
21 16 0.19
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:1307602 original size:40 final size:41
Alignment explanation
Indices: 1307557--1307663 Score: 189
Period size: 41 Copynumber: 2.6 Consensus size: 41
1307547 ATTTCCTAAT
*
1307557 TCGCAATGCGAATACGTAAATCGCAACGCGAA-TTGAAAAA
1 TCGCAATGCGATTACGTAAATCGCAACGCGAATTTGAAAAA
*
1307597 TCGCAATGCGATTACGTAAATCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGATTACGTAAATCGCAACGCGAATTTGAAAAA
1307638 TCGCAATGCGATTACGTAAATCGCAA
1 TCGCAATGCGATTACGTAAATCGCAA
1307664 TGCGTATCTG
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 31 0.48
41 33 0.52
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (41 bp):
TCGCAATGCGATTACGTAAATCGCAACGCGAATTTGAAAAA
Found at i:1307723 original size:81 final size:81
Alignment explanation
Indices: 1307554--1307724 Score: 179
Period size: 81 Copynumber: 2.1 Consensus size: 81
1307544 ACGATTTCCT
* *
1307554 AATTCGCAATGCGAATACGTAAATCGCAACGCGAATTGAAAAATCGCAATGCGATTACGTAAATC
1 AATTCGCAATGCGAATACGTAAATCGCAACGCGAATTGAAAAATCGCAACGAGATTACGTAAATC
* *
1307619 GCAACGCGAATTTGGA
66 GCAACACGAATTTGCA
* * * * * *
1307635 AAATCGCAATGCGATTACGTAAATCGCAATGCGTATCTG-TAAATCGCAACGAGATT-C-TGACT
1 AATTCGCAATGCGAATACGTAAATCGCAACGCGAAT-TGAAAAATCGCAACGAGATTACGT-A-A
*
1307697 ATCGCAATACTGAATTT-CA
63 ATCGCAACAC-GAATTTGCA
1307716 AATTCGCAA
1 AATTCGCAA
1307725 CTCGATTTCT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
79 1 0.01
80 2 0.03
81 63 0.85
82 8 0.11
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (81 bp):
AATTCGCAATGCGAATACGTAAATCGCAACGCGAATTGAAAAATCGCAACGAGATTACGTAAATC
GCAACACGAATTTGCA
Found at i:1308588 original size:24 final size:24
Alignment explanation
Indices: 1308535--1308581 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
1308525 AGTATTCGAA
1308535 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
*
1308559 TTTGATCTTGGTCAATACTCGGA
1 TTTGATCTTGGTCAATACCCGGA
1308582 TTGTGATGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:1311070 original size:20 final size:20
Alignment explanation
Indices: 1310984--1311070 Score: 106
Period size: 20 Copynumber: 4.5 Consensus size: 20
1310974 CAACGCGGAA
1310984 ATCGCAACGC-G-AATGACT
1 ATCGCAACGCGGAAATGACT
* * *
1311002 ATCGCAACACGAAAATGAAT
1 ATCGCAACGCGGAAATGACT
** *
1311022 ATCGCAACATGGAATTGACT
1 ATCGCAACGCGGAAATGACT
1311042 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
1311062 ATCGCAACG
1 ATCGCAACG
1311071 AGAGAATCGC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
18 9 0.16
20 48 0.84
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:1311099 original size:19 final size:18
Alignment explanation
Indices: 1311075--1311160 Score: 90
Period size: 19 Copynumber: 4.8 Consensus size: 18
1311065 GCAACGAGAG
1311075 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATG-A
1311094 AATCGCAATGCGAAATGA
1 AATCGCAATGCGAAATGA
* *
1311112 AAGCGCAA--CG-AGTG-
1 AATCGCAATGCGAAATGA
1311126 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATG-A
*
1311146 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
1311161 CTAATTCGCA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
14 7 0.12
15 3 0.05
16 4 0.07
18 11 0.20
19 20 0.36
20 11 0.20
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (18 bp):
AATCGCAATGCGAAATGA
Found at i:1311255 original size:31 final size:32
Alignment explanation
Indices: 1311171--1311294 Score: 178
Period size: 32 Copynumber: 3.8 Consensus size: 32
1311161 CTAATTCGCA
1311171 TTGCGATTTTCATTTTCGCATTGCGATTCACTCG
1 TTGCGA-TTTCA-TTTCGCATTGCGATTCACTCG
1311205 TTGCGATTTCATTTCGCATTGCGATTCACTCG
1 TTGCGATTTCATTTCGCATTGCGATTCACTCG
*
1311237 TTGCGATTTCA-TTCGCATTGCGATTCTCTCG
1 TTGCGATTTCATTTCGCATTGCGATTCACTCG
* *
1311268 TTGCGATAGTCATTTCCGCGTTGCGAT
1 TTGCGAT-TTCATTT-CGCATTGCGAT
1311295 AGTGTTTGCA
Statistics
Matches: 84, Mismatches: 3, Indels: 6
0.90 0.03 0.06
Matches are distributed among these distances:
31 26 0.31
32 35 0.42
33 7 0.08
34 16 0.19
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (32 bp):
TTGCGATTTCATTTCGCATTGCGATTCACTCG
Found at i:1311273 original size:63 final size:67
Alignment explanation
Indices: 1311171--1311294 Score: 184
Period size: 63 Copynumber: 1.9 Consensus size: 67
1311161 CTAATTCGCA
*
1311171 TTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGAT-TTCATTT-CGCATTGCGATTCAC
1 TTGCGATTTTCA-TTTCGCATTGCGATTCACTCGTTGCGATAGTCATTTCCGCATTGCGATTCAC
1311234 TCG
65 TCG
* *
1311237 TTGCGA-TTTCA-TTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCCGCGTTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGATTCACTCGTTGCGATAGTCATTTCCGCATTGCGAT
1311295 AGTGTTTGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
63 26 0.49
64 6 0.11
65 15 0.28
66 6 0.11
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (67 bp):
TTGCGATTTTCATTTCGCATTGCGATTCACTCGTTGCGATAGTCATTTCCGCATTGCGATTCACT
CG
Found at i:1313367 original size:19 final size:19
Alignment explanation
Indices: 1313343--1313427 Score: 63
Period size: 19 Copynumber: 4.7 Consensus size: 19
1313333 GCAACGAGAG
1313343 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
1313362 AATCGCAA--C--AA-CAA
1 AATCGCAATGCGAAATGAA
* * *
1313376 AATCGCAACGCGAAAAGAC
1 AATCGCAATGCGAAATGAA
* *
1313395 TATCGCAATGCGAAAATGAC
1 AATCGCAATGCG-AAATGAA
*
1313415 TATCGCAATGCGA
1 AATCGCAATGCGA
1313428 TTTTCATTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
14 10 0.19
15 2 0.04
16 1 0.02
17 1 0.02
18 2 0.04
19 20 0.37
20 18 0.33
ACGTcount: A:0.45, C:0.22, G:0.19, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:1313400 original size:33 final size:32
Alignment explanation
Indices: 1313309--1313402 Score: 100
Period size: 33 Copynumber: 2.9 Consensus size: 32
1313299 TCTAAAACTT
* *
1313309 AAAATCGCAA-CGAAAATGACTATCGCAACGAG
1 AAAATCGCAAGCGAAAA-GACTATCGCAACAAC
* * **
1313341 AGAATCGCAATGCGAAATGAAAATCGCAACAAC
1 AAAATCGCAA-GCGAAAAGACTATCGCAACAAC
1313374 AAAATCGCAACGCGAAAAGACTATCGCAA
1 AAAATCGCAA-GCGAAAAGACTATCGCAA
1313403 TGCGAAAATG
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
32 9 0.18
33 35 0.71
34 5 0.10
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (32 bp):
AAAATCGCAAGCGAAAAGACTATCGCAACAAC
Found at i:1313417 original size:20 final size:19
Alignment explanation
Indices: 1313377--1313427 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 19
1313367 CAACAACAAA
*
1313377 ATCGCAACGCGAAAAGACT
1 ATCGCAATGCGAAAAGACT
1313396 ATCGCAATGCGAAAATGACT
1 ATCGCAATGCGAAAA-GACT
1313416 ATCGCAATGCGA
1 ATCGCAATGCGA
1313428 TTTTCATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAAAGACT
Found at i:1313478 original size:20 final size:20
Alignment explanation
Indices: 1313453--1313591 Score: 174
Period size: 20 Copynumber: 7.5 Consensus size: 20
1313443 CGATTCTTCG
1313453 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
1313473 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
1313493 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
1313513 --GTGATAGTCATTTT-GCA
1 TTGCGATAGTCATTTTCGCA
*
1313530 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
*
1313544 TTGCGATAGTCA-TTTCGCG
1 TTGCGATAGTCATTTTCGCA
1313563 TTGCGATAGTCA-TTTCGCA
1 TTGCGATAGTCATTTTCGCA
1313582 TTGCGATAGT
1 TTGCGATAGT
1313592 AAACTATTCT
Statistics
Matches: 106, Mismatches: 5, Indels: 17
0.83 0.04 0.13
Matches are distributed among these distances:
14 7 0.07
15 2 0.02
16 3 0.03
17 9 0.08
18 13 0.12
19 32 0.30
20 40 0.38
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:1313479 original size:33 final size:36
Alignment explanation
Indices: 1313437--1313589 Score: 96
Period size: 33 Copynumber: 4.3 Consensus size: 36
1313427 ATTTTCATTT
1313437 GCATTGCGAT-TC-TTCG-TTGCGATAGTCATTTTC
1 GCATTGCGATATCTTTCGATTGCGATAGTCATTTTC
1313470 GCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTC
1 GCATTGCGATA-TC--TTTCG-ATTGCGATAGTCATTTTC
* * *
1313510 GCA--GTGATAGTCATTTTGCATTGCGAT--TC--TCTC
1 GCATTGCGATA-TC-TTTCG-ATTGCGATAGTCATTTTC
*
1313543 G--TTGCGATAGTCATTTCGCGTTGCGATAGTCA-TTTC
1 GCATTGCGATA-TC-TTTCG-ATTGCGATAGTCATTTTC
1313579 GCATTGCGATA
1 GCATTGCGATA
1313590 GTAAACTATT
Statistics
Matches: 98, Mismatches: 8, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
33 35 0.36
35 6 0.06
36 4 0.04
37 13 0.13
38 20 0.20
40 20 0.20
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.39
Consensus pattern (36 bp):
GCATTGCGATATCTTTCGATTGCGATAGTCATTTTC
Found at i:1313583 original size:52 final size:56
Alignment explanation
Indices: 1313451--1313589 Score: 166
Period size: 52 Copynumber: 2.5 Consensus size: 56
1313441 TGCGATTCTT
*
1313451 CGTTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCGCATTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCA-TTTCGCATTGCGATA-TCA-TCTCG-ATTGCGATAGTCATTTTCG
*
1313511 CAG-T--GATAGTCATTTTGCATTGCGAT-TC-TCTCG-TTGCGATAGTCA-TTTCG
1 C-GTTGCGATAGTCATTTCGCATTGCGATATCATCTCGATTGCGATAGTCATTTTCG
1313561 CGTTGCGATAGTCATTTCGCATTGCGATA
1 CGTTGCGATAGTCATTTCGCATTGCGATA
1313590 GTAAACTATT
Statistics
Matches: 71, Mismatches: 3, Indels: 17
0.78 0.03 0.19
Matches are distributed among these distances:
49 1 0.01
50 7 0.10
51 12 0.17
52 21 0.30
53 4 0.06
55 2 0.03
57 13 0.18
58 8 0.11
60 2 0.03
61 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (56 bp):
CGTTGCGATAGTCATTTCGCATTGCGATATCATCTCGATTGCGATAGTCATTTTCG
Found at i:1315378 original size:20 final size:20
Alignment explanation
Indices: 1315320--1315389 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
1315310 AAAACTTTAA
** **
1315320 ATCGCAACATGAAAATGAAA
1 ATCGCAACGCGAAAATGACT
*
1315340 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
1315360 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
1315380 ATCGCAACGC
1 ATCGCAACGC
1315390 AAGAATCACA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:1315818 original size:22 final size:22
Alignment explanation
Indices: 1315757--1315828 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 22
1315747 TGACCGTGAA
* * *
1315757 TGATTTCGCCGGAGATGGAGAC
1 TGATATCGTCGGAGATGGGGAC
*
1315779 TGATATCTTC---G-TGGGGAC
1 TGATATCGTCGGAGATGGGGAC
*
1315797 TGATTTCGTCGGAGATGGGGAC
1 TGATATCGTCGGAGATGGGGAC
*
1315819 GGATATCGTC
1 TGATATCGTC
1315829 TTAGAGAGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
18 14 0.37
19 1 0.03
21 1 0.03
22 22 0.58
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (22 bp):
TGATATCGTCGGAGATGGGGAC
Found at i:1316015 original size:20 final size:20
Alignment explanation
Indices: 1315990--1316063 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
1315980 GCACTATGTA
1315990 AATCGCATTGCGATTTACGT
1 AATCGCATTGCGATTTACGT
* **
1316010 AATCGCATTGCGATTTTCCA
1 AATCGCATTGCGATTTACGT
* *
1316030 AATTCGCGTTGCGATTTATGT
1 AA-TCGCATTGCGATTTACGT
*
1316051 ATTCGCATTGCGA
1 AATCGCATTGCGA
1316064 ATTTGGAAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.67
21 14 0.33
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (20 bp):
AATCGCATTGCGATTTACGT
Found at i:1322917 original size:30 final size:30
Alignment explanation
Indices: 1322855--1322939 Score: 86
Period size: 30 Copynumber: 2.8 Consensus size: 30
1322845 ATAAGTTTAA
* *
1322855 TATAAAG-TATATTTATATTATAAATATAAT
1 TATAAAGATATATATATA-TATATATATAAT
1322885 TATTAAAGATATATATATATATATATAT-AT
1 TA-TAAAGATATATATATATATATATATAAT
*
1322915 TATATATGA-ACTATATATATATATA
1 TATA-AAGATA-TATATATATATATA
1322940 AACTATGTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 3 0.06
30 23 0.48
31 13 0.27
32 9 0.19
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (30 bp):
TATAAAGATATATATATATATATATATAAT
Found at i:1322943 original size:17 final size:16
Alignment explanation
Indices: 1322854--1323024 Score: 98
Period size: 17 Copynumber: 10.2 Consensus size: 16
1322844 TATAAGTTTA
*
1322854 ATATAAAGTATATTTAT
1 ATATAAA-TATATATAT
1322871 ATTATAAATATA-AT-T
1 A-TATAAATATATATAT
*
1322886 AT-TAAAGATATATAT
1 ATATAAATATATATAT
*
1322901 ATATATATATATATTAT
1 ATATAAATATATA-TAT
*
1322918 ATATGAACTATATATAT
1 ATAT-AAATATATATAT
*
1322935 ATATAAACTATGTATAT
1 ATATAAA-TATATATAT
* * * *
1322952 AAACTATATATGTATAA
1 ATA-TAAATATATATAT
*
1322969 ACTATAAAAAATATATAGT
1 A-TAT-AAATATATATA-T
* *
1322988 TTATAAACTATA-ATTT
1 ATATAAA-TATATATAT
*
1323004 ATATTAATATAGTATAT
1 ATATAAATATA-TATAT
1323021 ATAT
1 ATAT
1323025 GTATGTATAT
Statistics
Matches: 118, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
13 7 0.06
14 3 0.03
15 9 0.08
16 17 0.14
17 51 0.43
18 31 0.26
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (16 bp):
ATATAAATATATATAT
Found at i:1322950 original size:13 final size:13
Alignment explanation
Indices: 1322930--1322974 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
1322920 ATGAACTATA
1322930 TATATATATAAAC
1 TATATATATAAAC
*
1322943 TATGTATATAAAC
1 TATATATATAAAC
1322956 TATATATGTATAAAC
1 TATATA--TATAAAC
1322971 TATA
1 TATA
1322975 AAAAATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.61
15 11 0.39
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:1322951 original size:30 final size:30
Alignment explanation
Indices: 1322854--1322967 Score: 97
Period size: 32 Copynumber: 3.7 Consensus size: 30
1322844 TATAAGTTTA
* * *
1322854 ATATAAAGTATATTTATATTATAAATATAAT
1 ATATAAACTATATATATA-TATAAATATTAT
*
1322885 -TATTAAAGATATATATATATATATATATATTAT
1 ATA-TAAA-CTATATATATATATA-A-ATATTAT
* *
1322918 ATATGAACTATATATATATATAAACTA-TGT
1 ATATAAACTATATATATATATAAA-TATTAT
*
1322948 ATATAAACTATATATGTATA
1 ATATAAACTATATATATATA
1322968 AACTATAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
30 23 0.33
31 11 0.16
32 24 0.35
33 9 0.13
34 2 0.03
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (30 bp):
ATATAAACTATATATATATATAAATATTAT
Found at i:1322974 original size:15 final size:14
Alignment explanation
Indices: 1322928--1322974 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
1322918 ATATGAACTA
1322928 TATATATATATAAAC
1 TATATAT-TATAAAC
*
1322943 TATGTA-TATAAAC
1 TATATATTATAAAC
1322956 TATATATGTATAAAC
1 TATATAT-TATAAAC
1322971 TATA
1 TATA
1322975 AAAAATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 12 0.43
15 16 0.57
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.40
Consensus pattern (14 bp):
TATATATTATAAAC
Found at i:1322985 original size:2 final size:2
Alignment explanation
Indices: 1322893--1322967 Score: 64
Period size: 2 Copynumber: 36.5 Consensus size: 2
1322883 ATTATTAAAG
1322893 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT GA- ACT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT A-T AT AT AT AT
* * * *
1322935 AT AT AA ACT AT GT AT AT AA ACT AT AT AT GT AT A
1 AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT A
1322968 AACTATAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
1 2 0.03
2 53 0.90
3 4 0.07
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (2 bp):
AT
Found at i:1323007 original size:25 final size:24
Alignment explanation
Indices: 1322927--1323000 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 24
1322917 TATATGAACT
*
1322927 ATATATATATATAAACTATGTATATAAA
1 ATATATATGTATAAACTA--TA-A-AAA
*
1322955 CTATATATGTATAAACTATAAAAA
1 ATATATATGTATAAACTATAAAAA
*
1322979 ATATATAGTTTATAAACTATAA
1 ATATATA-TGTATAAACTATAA
1323001 TTTATATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 9 0.22
25 14 0.34
26 2 0.05
28 16 0.39
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (24 bp):
ATATATATGTATAAACTATAAAAA
Found at i:1323035 original size:52 final size:51
Alignment explanation
Indices: 1322979--1323093 Score: 128
Period size: 52 Copynumber: 2.3 Consensus size: 51
1322969 ACTATAAAAA
* * *
1322979 ATATATAGTTTATAAACTATAATTTAT-ATTAATATAGTATATATA-TGTATGT
1 ATATATACTATATAAACTATAAATTATAATT--TATAGTA-ATATAGTGTATGT
* * *
1323031 ATATAAACTATATAAACTATAAATTATAATTTATATTAATATAGTGTGTGT
1 ATATATACTATATAAACTATAAATTATAATTTATAGTAATATAGTGTATGT
1323082 ATATATA-TATAT
1 ATATATACTATAT
1323094 GTATGTATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
50 10 0.19
51 18 0.33
52 23 0.43
53 3 0.06
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (51 bp):
ATATATACTATATAAACTATAAATTATAATTTATAGTAATATAGTGTATGT
Found at i:1323414 original size:20 final size:20
Alignment explanation
Indices: 1323391--1323617 Score: 94
Period size: 18 Copynumber: 12.0 Consensus size: 20
1323381 TATAGTACAT
* *
1323391 GTATGTATAAACTATGTATA
1 GTATATATAAACTATATATA
1323411 GTATATATAAACTATATATA
1 GTATATATAAACTATATATA
*
1323431 -TATATATATA-TATATATA
1 GTATATATAAACTATATATA
* * * *
1323449 -AACCATATAAAGTAAAT-TA
1 GTA-TATATAAACTATATATA
* * *
1323468 CT-TATAT-AATTATAAAATA
1 GTATATATAAACTAT-ATATA
* **
1323487 CTATGCATAAACTATATA-A
1 GTATATATAAACTATATATA
* *
1323506 -AATA-ATAAAGTAT-TATA
1 GTATATATAAACTATATATA
*
1323523 -TATATATATA-TATATATA
1 GTATATATAAACTATATATA
*
1323541 -TATATATATA-TATATATA
1 GTATATATAAACTATATATA
*
1323559 -TATATATATA-TATATATA
1 GTATATATAAACTATATATA
* *
1323577 -TATATATAAAGTTTAGTATAAA
1 GTATATATAAA--CTA-TATATA
*
1323599 GTATATATACA-TATATATA
1 GTATATATAAACTATATATA
1323618 TAATAAGTAT
Statistics
Matches: 167, Mismatches: 25, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
16 2 0.01
17 19 0.11
18 69 0.41
19 27 0.16
20 29 0.17
21 7 0.04
22 5 0.03
23 9 0.05
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (20 bp):
GTATATATAAACTATATATA
Found at i:1323419 original size:2 final size:2
Alignment explanation
Indices: 1323407--1323448 Score: 57
Period size: 2 Copynumber: 20.0 Consensus size: 2
1323397 ATAAACTATG
*
1323407 TA TA GTA TA TA TA AA CTA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
1323449 AACCATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 33 0.92
3 3 0.08
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:1323526 original size:2 final size:2
Alignment explanation
Indices: 1323519--1323645 Score: 145
Period size: 2 Copynumber: 63.0 Consensus size: 2
1323509 AATAAAGTAT
1323519 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
1323561 TA TA TA TA TA TA TA TA TA TA TA TA AA GTT TA GTA TA AA GTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA -TA TA TA -TA TA
*
1323604 TA TA CA TA TA TA TA TA -A TA -A GTA TA -A GTA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA
1323644 TA
1 TA
1323646 AAGTATAATT
Statistics
Matches: 108, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
1 4 0.04
2 99 0.92
3 5 0.05
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:1323669 original size:20 final size:18
Alignment explanation
Indices: 1323593--1323695 Score: 85
Period size: 18 Copynumber: 5.9 Consensus size: 18
1323583 TAAAGTTTAG
1323593 TATAAAGTAT-A-TATACA
1 TATAAAGTATAATTATA-A
* *
1323610 TATATA-TATAA-TA-AG
1 TATAAAGTATAATTATAA
1323625 TAT-AAGTAT-ATTATATA
1 TATAAAGTATAATTATA-A
1323642 TATAAAGTATAATTATAA
1 TATAAAGTATAATTATAA
*
1323660 TGACTAAAGTATAAGTATAA
1 T-A-TAAAGTATAATTATAA
*
1323680 TATAAAATATAATTAT
1 TATAAAGTATAATTAT
1323696 TAAATAGTAT
Statistics
Matches: 70, Mismatches: 7, Indels: 17
0.74 0.07 0.18
Matches are distributed among these distances:
14 2 0.03
15 8 0.11
16 5 0.07
17 11 0.16
18 20 0.29
19 8 0.11
20 16 0.23
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (18 bp):
TATAAAGTATAATTATAA
Found at i:1323760 original size:14 final size:14
Alignment explanation
Indices: 1323743--1323769 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1323733 ATATACATGT
1323743 ATATATAATATAAA
1 ATATATAATATAAA
1323757 ATATATAATATAA
1 ATATATAATATAA
1323770 TATAAAGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATATAATATAAA
Found at i:1323767 original size:19 final size:19
Alignment explanation
Indices: 1323745--1323854 Score: 100
Period size: 19 Copynumber: 5.5 Consensus size: 19
1323735 ATACATGTAT
*
1323745 ATATAATATAAAATATATA
1 ATATAATATAAAGTATATA
*
1323764 ATATAATATAAAGTACATA
1 ATATAATATAAAGTATATA
1323783 AGTATTAA-AT-AAGTATATA
1 A-TA-TAATATAAAGTATATA
1323802 ATATTAAATATAAAGTATATAA
1 ATA-T-AATATAAAGTATAT-A
*
1323824 ATATATCTATAAAGTATA-A
1 ATATA-ATATAAAGTATATA
1323843 AGTATATATATA
1 A-TATA-ATATA
1323855 CTTTATATTA
Statistics
Matches: 78, Mismatches: 5, Indels: 15
0.80 0.05 0.15
Matches are distributed among these distances:
18 4 0.05
19 31 0.40
20 16 0.21
21 23 0.29
22 4 0.05
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.36
Consensus pattern (19 bp):
ATATAATATAAAGTATATA
Found at i:1323835 original size:33 final size:34
Alignment explanation
Indices: 1323747--1323846 Score: 95
Period size: 33 Copynumber: 3.0 Consensus size: 34
1323737 ACATGTATAT
1323747 ATAA-TATA-AAATATATAATATAATATAAAGTAC
1 ATAAGTATATAAATATAT-ATATAATATAAAGTAC
*
1323780 ATAAGTAT-TAAATA-AGTATATAATATTAAA-TAT
1 ATAAGTATATAAATATA-TATATAATA-TAAAGTAC
*
1323813 A-AAGTATATAAATATATCTATAAAGTATAAAGTA
1 ATAAGTATATAAATATATATAT-AA-TATAAAGTA
1323847 TATATATACT
Statistics
Matches: 56, Mismatches: 2, Indels: 16
0.76 0.03 0.22
Matches are distributed among these distances:
32 6 0.11
33 26 0.46
34 20 0.36
35 4 0.07
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (34 bp):
ATAAGTATATAAATATATATATAATATAAAGTAC
Found at i:1323918 original size:15 final size:14
Alignment explanation
Indices: 1323899--1323951 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 14
1323889 ACTCTCTCTC
1323899 TATATATATATATG
1 TATATATATATATG
*
1323913 TAATATATACTTATACTT
1 T-ATATATA--TATA-TG
1323931 TATAT-TATATATG
1 TATATATATATATG
1323944 TATATATA
1 TATATATA
1323952 CTTTATACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
13 6 0.19
14 7 0.22
15 7 0.22
16 2 0.06
17 8 0.25
18 2 0.06
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (14 bp):
TATATATATATATG
Found at i:1323976 original size:73 final size:77
Alignment explanation
Indices: 1323851--1324039 Score: 194
Period size: 73 Copynumber: 2.5 Consensus size: 77
1323841 AAAGTATATA
* ** * * * *
1323851 TATACTTTATATTATATA-CT-TATATACTTTATTGTTATACTCTCTCTCTATATATA-TATA-T
1 TATACTTTATATTATATATGTATATATACTTTATACTAAAACTCTCTATATATATA-ACTATAGT
1323912 GTA-ATATATACT
65 GTATATATATACT
1323924 TATACTTTATATTATATATGTATATATACTTTATACTAAAACT-T-TATATATATAACTTATAGT
1 TATACTTTATATTATATATGTATATATACTTTATACTAAAACTCTCTATATATATAAC-TATAGT
*
1323987 TTATATATATACT
65 GTATATATATACT
1324000 TATACACTTTATATTATTATATATGTATATATACTTTATA
1 TAT--AC-TT-TA-TATTATATATGTATATATACTTTATA
1324040 TTTAATACTT
Statistics
Matches: 97, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
72 1 0.01
73 26 0.27
74 6 0.06
75 20 0.21
76 12 0.12
78 2 0.02
79 2 0.02
80 2 0.02
81 26 0.27
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (77 bp):
TATACTTTATATTATATATGTATATATACTTTATACTAAAACTCTCTATATATATAACTATAGTG
TATATATATACT
Found at i:1323977 original size:19 final size:19
Alignment explanation
Indices: 1323955--1324013 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
1323945 ATATATACTT
1323955 TATACTAAAACTTTATATA
1 TATACTAAAACTTTATATA
* * *
1323974 TATAACTTATAGTTTATATA
1 TAT-ACTAAAACTTTATATA
*
1323994 TATACTTATACACTTTATAT
1 TATAC-TA-AAACTTTATAT
1324014 TATTATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 5 0.16
20 17 0.55
21 9 0.29
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (19 bp):
TATACTAAAACTTTATATA
Found at i:1324020 original size:27 final size:28
Alignment explanation
Indices: 1323980--1324059 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 28
1323970 TATATATAAC
1323980 TTATAGTTT-ATATATATACTTATACACT
1 TTATA-TTTAATATATATACTTATACACT
* * *
1324008 TTATA-TTATTATATAT-GTATATATACT
1 TTATATTTAATATATATACT-TATACACT
1324035 TTATATTTAATACTTATATACTTAT
1 TTATATTTAATA--TATATACTTAT
1324060 TTGATGCTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
26 3 0.07
27 19 0.46
28 10 0.24
30 8 0.20
31 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (28 bp):
TTATATTTAATATATATACTTATACACT
Found at i:1324052 original size:81 final size:79
Alignment explanation
Indices: 1323915--1324138 Score: 220
Period size: 81 Copynumber: 2.8 Consensus size: 79
1323905 TATATATGTA
* *
1323915 ATATATACTTAT-AC-TT-TA-TATTATATATGTATATATACTTTATA-CTAAAACTTTATATA-
1 ATATATACTTATAACTTTATATTATTATATATGTATATATACTTTATATTTAATAC-TTATATAC
*
1323974 TATAACTT-ATAGTTTAT
65 T-T-ACTTGAT-GCTTAT
1323991 ATATATACTTATACACTTTATATTATTATATATGTATATATACTTTATATTTAATACTTATATAC
1 ATATATACTTATA-ACTTTATATTATTATATATGTATATATACTTTATATTTAATACTTATATAC
*
1324056 TTATTTGATGCTTAT
65 TTACTTGATGCTTAT
*
1324071 ATACTTATATTTATATTA-TTATATATTATTATATA--TATATATA--TTATATTTATATACTTA
1 ATA--TATACTTATA--ACTT-TATATTATTATATATGTATATATACTTTATATTTA-ATACTTA
1324131 TATACTTA
60 TATACTTA
1324139 TATACTTTAG
Statistics
Matches: 129, Mismatches: 6, Indels: 22
0.82 0.04 0.14
Matches are distributed among these distances:
76 12 0.09
78 2 0.02
79 11 0.09
80 28 0.22
81 44 0.34
82 17 0.13
83 15 0.12
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (79 bp):
ATATATACTTATAACTTTATATTATTATATATGTATATATACTTTATATTTAATACTTATATACT
TACTTGATGCTTAT
Found at i:1324057 original size:8 final size:8
Alignment explanation
Indices: 1323992--1324145 Score: 95
Period size: 8 Copynumber: 20.1 Consensus size: 8
1323982 ATAGTTTATA
1323992 TATATACT
1 TATATACT
*
1324000 TATACACTT
1 TATATAC-T
1324009 TATATTA-T
1 TATA-TACT
*
1324017 TATATATGT
1 TATATA-CT
1324026 ATATATACT
1 -TATATACT
*
1324035 T-TATATT
1 TATATACT
1324042 TA-ATACT
1 TATATACT
1324049 TATATACT
1 TATATACT
*
1324057 TATTTGATGCT
1 TA--T-ATACT
1324068 TATATACT
1 TATATACT
1324076 TATAT--T
1 TATATACT
1324082 TATATTA-T
1 TATA-TACT
1324090 TATATA-T
1 TATATACT
1324097 TAT-TA--
1 TATATACT
1324102 TATATA--
1 TATATACT
1324108 TATATA-T
1 TATATACT
1324115 TATAT--T
1 TATATACT
1324121 TATATACT
1 TATATACT
1324129 TATATACT
1 TATATACT
1324137 TATATACT
1 TATATACT
1324145 T
1 T
1324146 TAGTCTATAA
Statistics
Matches: 123, Mismatches: 7, Indels: 32
0.76 0.04 0.20
Matches are distributed among these distances:
5 3 0.02
6 21 0.17
7 26 0.21
8 51 0.41
9 8 0.07
10 8 0.07
11 6 0.05
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (8 bp):
TATATACT
Found at i:1324086 original size:55 final size:55
Alignment explanation
Indices: 1324027--1324180 Score: 139
Period size: 55 Copynumber: 2.8 Consensus size: 55
1324017 TATATATGTA
1324027 TATATACTTTATAT-TTAATACT-TATATACT-TATT-TGATGCTTATATACTTATAT-T
1 TATATACTTTATATATTAATA-TATATATA-TATATTAT-AT--TTATATACTTATATAT
*
1324082 TATAT--TATTATATATTATTATATATATATATATTATATTTATATACTTATATACT
1 TATATACT-TTATATATTAATATATATATATATATTATATTTATATACTTATATA-T
* *
1324137 TATATACTTTAGTCTA-TAAT-TATATATATATA-TATATTAATATA
1 TATATACTTTA-TATATTAATATATATATATATATTATATTTATATA
1324181 TGTATGTAGA
Statistics
Matches: 85, Mismatches: 4, Indels: 21
0.77 0.04 0.19
Matches are distributed among these distances:
53 15 0.18
54 19 0.22
55 40 0.47
56 7 0.08
57 4 0.05
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (55 bp):
TATATACTTTATATATTAATATATATATATATATTATATTTATATACTTATATAT
Found at i:1324105 original size:2 final size:2
Alignment explanation
Indices: 1324076--1324181 Score: 63
Period size: 2 Copynumber: 56.5 Consensus size: 2
1324066 CTTATATACT
*
1324076 TA TA TT TA TA T- TA T- TA TA TA T- TA T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
1324114 T- TA TA TT TA TA TA CT- TA TA TA CT- TA TA TA CTT TA GTC TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA -TA TA -TA TA TA
1324155 -A T- TA TA TA TA TA TA TA TA T- TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1324182 GTATGTAGAC
Statistics
Matches: 81, Mismatches: 8, Indels: 30
0.68 0.07 0.25
Matches are distributed among these distances:
1 11 0.14
2 66 0.81
3 4 0.05
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.55
Consensus pattern (2 bp):
TA
Found at i:1326125 original size:7 final size:7
Alignment explanation
Indices: 1326113--1326215 Score: 72
Period size: 7 Copynumber: 14.6 Consensus size: 7
1326103 GTACTATATA
1326113 TATAAAG
1 TATAAAG
1326120 TATAAAG
1 TATAAAG
1326127 TATATAA-
1 TATA-AAG
*
1326134 TATAAAC
1 TATAAAG
*
1326141 TATTAAAC
1 TA-TAAAG
1326149 TATATAA-
1 TATA-AAG
1326156 TAT-AAG
1 TATAAAG
1326162 TATTAAA-
1 TA-TAAAG
1326169 TATAAAG
1 TATAAAG
1326176 TATTAAAG
1 TA-TAAAG
*
1326184 TATATAAA
1 TATA-AAG
1326192 TAT-AAG
1 TATAAAG
* *
1326198 TATTAAT
1 TATAAAG
1326205 TATAAAG
1 TATAAAG
1326212 TATA
1 TATA
1326216 TTAATTATCA
Statistics
Matches: 80, Mismatches: 5, Indels: 22
0.75 0.05 0.21
Matches are distributed among these distances:
5 2 0.03
6 13 0.16
7 40 0.50
8 25 0.31
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (7 bp):
TATAAAG
Found at i:1326147 original size:22 final size:21
Alignment explanation
Indices: 1326107--1326195 Score: 96
Period size: 22 Copynumber: 4.2 Consensus size: 21
1326097 AATTTGGTAC
1326107 TATAT-ATATAAAGTA-TAAA
1 TATATAATATAAAGTATTAAA
*
1326126 GTATATAATATAAACTATTAAA
1 -TATATAATATAAAGTATTAAA
1326148 CTATATAATAT-AAGTATTAAA
1 -TATATAATATAAAGTATTAAA
1326169 TATA-AAGTATTAAAGTATATAAA
1 TATATAA-TA-TAAAGTAT-TAAA
1326192 TATA
1 TATA
1326196 AGTATTAATT
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
19 2 0.03
20 11 0.18
21 19 0.32
22 20 0.33
23 8 0.13
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (21 bp):
TATATAATATAAAGTATTAAA
Found at i:1326171 original size:35 final size:36
Alignment explanation
Indices: 1326111--1326210 Score: 132
Period size: 35 Copynumber: 2.8 Consensus size: 36
1326101 TGGTACTATA
1326111 TATATAAAGTATAAAGTA-TATAATATAAACTATTAAAC
1 TATATAAA-TAT-AAGTATTA-AATATAAACTATTAAAC
* *
1326149 TATAT-AATATAAGTATTAAATATAAAGTATTAAAG
1 TATATAAATATAAGTATTAAATATAAACTATTAAAC
*
1326184 TATATAAATATAAGTATTAATTATAAA
1 TATATAAATATAAGTATTAAATATAAA
1326211 GTATATTAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
35 25 0.44
36 25 0.44
37 2 0.04
38 5 0.09
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (36 bp):
TATATAAATATAAGTATTAAATATAAACTATTAAAC
Found at i:1326194 original size:36 final size:36
Alignment explanation
Indices: 1326111--1326214 Score: 140
Period size: 36 Copynumber: 2.9 Consensus size: 36
1326101 TGGTACTATA
*
1326111 TATATAAAGTATAAAGTA-TATAATATAAACTATTAAAC
1 TATATAAA-TAT-AAGTATTA-AATATAAAGTATTAAAC
*
1326149 TATAT-AATATAAGTATTAAATATAAAGTATTAAAG
1 TATATAAATATAAGTATTAAATATAAAGTATTAAAC
*
1326184 TATATAAATATAAGTATTAATTATAAAGTAT
1 TATATAAATATAAGTATTAAATATAAAGTAT
1326215 ATTAATTATC
Statistics
Matches: 61, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
35 25 0.41
36 29 0.48
37 2 0.03
38 5 0.08
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (36 bp):
TATATAAATATAAGTATTAAATATAAAGTATTAAAC
Found at i:1326219 original size:16 final size:16
Alignment explanation
Indices: 1326179--1326223 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
1326169 TATAAAGTAT
*
1326179 TAAAGTATA-TAAATA
1 TAAAGTATATTAATTA
1326194 T-AAG--TATTAATTA
1 TAAAGTATATTAATTA
1326207 TAAAGTATATTAATTA
1 TAAAGTATATTAATTA
1326223 T
1 T
1326224 CATAATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
12 2 0.08
13 6 0.24
14 6 0.24
15 1 0.04
16 10 0.40
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAGTATATTAATTA
Found at i:1326270 original size:18 final size:19
Alignment explanation
Indices: 1326216--1326272 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 19
1326206 ATAAAGTATA
1326216 TTAATTATCATAATTAATATC
1 TTAATTATCATAATT-A-ATC
* *
1326237 TTAAGTAT-ATTTATTAAT-
1 TTAATTATCA-TAATTAATC
1326255 TTAATTATCATAATTAAT
1 TTAATTATCATAATTAAT
1326273 ATTTTATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 14 0.47
19 3 0.10
20 2 0.07
21 11 0.37
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (19 bp):
TTAATTATCATAATTAATC
Found at i:1326419 original size:16 final size:16
Alignment explanation
Indices: 1326377--1326433 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
1326367 AAATGGTGAT
*
1326377 ATAT-AAGTTAGGTAA
1 ATATCAAGTCAGGTAA
*
1326392 ATGTCAAGTCAGGTAA
1 ATATCAAGTCAGGTAA
*
1326408 ATATC-AGATCAGGTCA
1 ATATCAAG-TCAGGTAA
*
1326424 ATAACAAGTC
1 ATATCAAGTC
1326434 GGATCATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 5 0.15
16 27 0.79
17 2 0.06
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.26
Consensus pattern (16 bp):
ATATCAAGTCAGGTAA
Found at i:1326496 original size:16 final size:16
Alignment explanation
Indices: 1326443--1326497 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
1326433 CGGATCATTT
1326443 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTGAAA
* * * *
1326459 ACATGTCAAGTTCATA
1 ACAGGTCAGGTTGAAA
*
1326475 ATAGGTCAGGTTGAAA
1 ACAGGTCAGGTTGAAA
1326491 ACAGGTC
1 ACAGGTC
1326498 GGGTAATATC
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (16 bp):
ACAGGTCAGGTTGAAA
Found at i:1328222 original size:23 final size:23
Alignment explanation
Indices: 1328187--1328234 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1328177 ATCAAGTATA
* *
1328187 ATAATATATTAGGTAGTGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
1328210 ATAATGTAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
1328233 AT
1 AT
1328235 TGACATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:1328981 original size:182 final size:182
Alignment explanation
Indices: 1328673--1329121 Score: 651
Period size: 182 Copynumber: 2.5 Consensus size: 182
1328663 TTTACTATTA
**
1328673 GTTTTGTCATTTCGAGACCTATTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACAT
1 GTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACAT
*
1328738 TTTTATAAAGTATCGACACTTTATTGACGCTATAATTTCTTTTCTTTTAAATTCAAAAAGTGTCG
66 TTTTATAAAGTATCGACACTTTATTGACGCTATAACTTCTTTTCTTTTAAATTCAAAAAGTGTCG
* **
1328803 ATATTTATAATAAAGTATCGACACT-TTCAACATATCCGATAACTCTTTACC-
131 ATACTTATAATAAAGTATCGACACTATT-AACATATCCGATAACGATTTACCT
* *
1328854 GATTTTGTCATTTCGAGACCGGTTTTATCATATTTTTATC-TGTTATATTGTTATGGATCGATAT
1 G-TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTA-CATGTTATATTGTTATGGATCGATAC
1328918 ATTTTTATAAAGTATCGACACTTTATT-AGCGCTATAACTTCTTTTCTTTTAAATTTC-AAAAGT
64 ATTTTTATAAAGTATCGACACTTTATTGA-CGCTATAACTTCTTTTCTTTTAAA-TTCAAAAAGT
* * *
1328981 GTCGATACTTATAATAAAGTATCGACACTATTAACATATTCGGTAGCGATTTACCT
127 GTCGATACTTATAATAAAGTATCGACACTATTAACATATCCGATAACGATTTACCT
** * * *
1329037 GTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTTACTTGTTATATTGTTAT--ATCGATACAA
1 GTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACAT
*
1329100 TTTTATAAAGTATCGATACTTT
66 TTTTATAAAGTATCGACACTTT
1329122 CAATATATCC
Statistics
Matches: 243, Mismatches: 18, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
180 29 0.12
181 3 0.01
182 204 0.84
183 7 0.03
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (182 bp):
GTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACAT
TTTTATAAAGTATCGACACTTTATTGACGCTATAACTTCTTTTCTTTTAAATTCAAAAAGTGTCG
ATACTTATAATAAAGTATCGACACTATTAACATATCCGATAACGATTTACCT
Found at i:1329248 original size:111 final size:111
Alignment explanation
Indices: 1328994--1329562 Score: 930
Period size: 111 Copynumber: 5.1 Consensus size: 111
1328984 GATACTTATA
* * *
1328994 ATAAAGTATCGACACTATT-AACATATTCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGG
1 ATAAAGTATCGACACT-TTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGG
* *
1329058 TTTTGTCATTTTTTTACTTGTTATATTGTTAT--ATCGATACAATTTT
65 TTTTGTCA-TTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* *
1329104 ATAAAGTATCGATACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1329169 TTTGTCATTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* *
1329215 ATAAAGTAACGACACTTTCAATATATCCGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1329280 TTTGTCATTTTTTACCTGTTATATTGTTATGGATCG-TACATTTTT
66 TTTGTCATTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* *
1329325 ATAAAGTATCGACACTTTCAATAAATCTGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1329390 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCA-TTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* *
1329437 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTAATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * * *
1329502 TTTGTCATTTTTTACATGTTATATTATTATGGATCAATATATTTTT
66 TTTGTCATTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
1329548 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
1329563 AAACCGACAA
Statistics
Matches: 431, Mismatches: 23, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
109 24 0.06
110 141 0.33
111 189 0.44
112 77 0.18
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (111 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
Found at i:1329364 original size:221 final size:222
Alignment explanation
Indices: 1328994--1329562 Score: 914
Period size: 221 Copynumber: 2.6 Consensus size: 222
1328984 GATACTTATA
* *
1328994 ATAAAGTATCGACACTATT-AACATATTCGGTAGCGA-TTTACCTGTTTTGTCATTTATAGACCG
1 ATAAAGTATCGACACT-TTCAATATATCCGGTAGC-ACTTTACCTGTTTTGTCATTTATAGACCG
* * *
1329057 GTTTTGTCATTTTTTTACTTGTTATATTGTTAT--ATCGATACAATTTTATAAAGTATCGATACT
64 GTTTTGTCA-TTTTTTACATGTTATATTGTTATGGATCG-TACATTTTTATAAAGTATCGACACT
*
1329120 TTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGATTTTGTCA-TTTTTTAC
127 TTCAATAAATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTAC
1329184 CTGTTATATTGTTATGGATCGATACATTTTT
192 CTGTTATATTGTTATGGATCGATACATTTTT
*
1329215 ATAAAGTAACGACACTTTCAATATATCCGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGT
*
1329280 TTTGTCATTTTTTACCTGTTATATTGTTATGGATCGTACATTTTTATAAAGTATCGACACTTTCA
66 TTTGTCATTTTTTACATGTTATATTGTTATGGATCGTACATTTTTATAAAGTATCGACACTTTCA
* *
1329345 ATAAATCTGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTTACCTGT
131 ATAAATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTACCTGT
1329410 TATATTGTTATGGATCGATACATTTTT
196 TATATTGTTATGGATCGATACATTTTT
* * *
1329437 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTAATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGT
* * *
1329502 TTTGTCATTTTTTACATGTTATATTATTATGGATCAATATATTTTTATAAAGTATCGACAC
66 TTTGTCATTTTTTACATGTTATATTGTTATGGATC-GTACATTTTTATAAAGTATCGACAC
1329563 AAACCGACAA
Statistics
Matches: 325, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
220 25 0.08
221 140 0.43
222 137 0.42
223 23 0.07
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (222 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTACATGTTATATTGTTATGGATCGTACATTTTTATAAAGTATCGACACTTTCA
ATAAATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTACCTGT
TATATTGTTATGGATCGATACATTTTT
Found at i:1332507 original size:30 final size:29
Alignment explanation
Indices: 1332442--1332508 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
1332432 ACTAAATCAG
** *
1332442 TAATTTTGCATTTTTTAGTTATAATAATT
1 TAATTTTAAATTTTTTAATTATAATAATT
*
1332471 TAATTTTAAATTTATTTAATTATATTAAATT
1 TAATTTTAAATTT-TTTAATTATAAT-AATT
*
1332502 TATTTTT
1 TAATTTT
1332509 TGACTGACAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 11 0.35
30 10 0.32
31 10 0.32
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (29 bp):
TAATTTTAAATTTTTTAATTATAATAATT
Found at i:1333253 original size:19 final size:19
Alignment explanation
Indices: 1333205--1333254 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
1333195 AAAACAAGAA
* *
1333205 ATTAAAAAAT-ATTAAAAT
1 ATTAAAAATTAATAAAAAT
*
1333223 ACTAAAATATTAATAAAAAT
1 ATTAAAA-ATTAATAAAAAT
1333243 ATTAAAAATTAA
1 ATTAAAAATTAA
1333255 AATTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 6 0.23
19 7 0.27
20 13 0.50
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAAAATTAATAAAAAT
Found at i:1333255 original size:7 final size:8
Alignment explanation
Indices: 1333210--1333257 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
1333200 AAGAAATTAA
1333210 AAAATATT
1 AAAATATT
*
1333218 AAAATACT
1 AAAATATT
1333226 AAAATATT
1 AAAATATT
1333234 --AATA--
1 AAAATATT
1333238 AAAATATT
1 AAAATATT
1333246 AAAA-ATT
1 AAAATATT
1333253 AAAAT
1 AAAAT
1333258 TTTTTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
6 8 0.24
7 7 0.21
8 18 0.55
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAATATT
Found at i:1333307 original size:7 final size:7
Alignment explanation
Indices: 1333297--1333352 Score: 67
Period size: 7 Copynumber: 7.4 Consensus size: 7
1333287 ATAAAATAAT
1333297 AAATTTA
1 AAATTTA
1333304 AAATTTA
1 AAATTTA
1333311 AAATTTA
1 AAATTTA
1333318 AAATTTAAA
1 AAATTT--A
1333327 AATATTTA
1 AA-ATTTA
*
1333335 TGAATTTA
1 -AAATTTA
1333343 AAATTTA
1 AAATTTA
1333350 AAA
1 AAA
1333353 ACTCTCATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
7 29 0.67
8 6 0.14
9 4 0.09
10 4 0.09
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (7 bp):
AAATTTA
Done.