Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2082551
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 11
Found at i:372999 original size:14 final size:14
Alignment explanation
Indices: 372980--373015 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
372970 ATTGTTTAAT
372980 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
372994 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
373008 TGATTTGT
1 TGATTTGT
373016 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:373146 original size:19 final size:19
Alignment explanation
Indices: 373122--373218 Score: 150
Period size: 19 Copynumber: 5.4 Consensus size: 19
373112 AAAATTGACT
373122 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
373141 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
373160 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
373174 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
373193 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
373212 ATCGCAA
1 ATCGCAA
373219 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 55 0.77
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:373255 original size:19 final size:19
Alignment explanation
Indices: 373227--373394 Score: 177
Period size: 19 Copynumber: 9.6 Consensus size: 19
373217 AACGAGAGAA
* *
373227 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
373246 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
373262 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
373279 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
373298 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
373314 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
373331 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
373350 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
373366 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
373383 TCCGCATTGCGA
1 T-CGCATTGCGA
373395 AATGTAATGG
Statistics
Matches: 125, Mismatches: 8, Indels: 31
0.76 0.05 0.19
Matches are distributed among these distances:
14 18 0.14
16 21 0.17
17 18 0.14
18 2 0.02
19 60 0.48
20 6 0.05
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:373256 original size:52 final size:52
Alignment explanation
Indices: 373122--373237 Score: 232
Period size: 52 Copynumber: 2.2 Consensus size: 52
373112 AAAATTGACT
373122 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
373174 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
373226 ATCGCAATGCGA
1 ATCGCAATGCGA
373238 TTTTAATTTC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (52 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:373270 original size:33 final size:33
Alignment explanation
Indices: 373233--373394 Score: 159
Period size: 33 Copynumber: 4.7 Consensus size: 33
373223 AGAATCGCAA
*
373233 TGCGATTTTAATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
*
373266 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--T
* * * * *
373304 TGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCAT
1 TGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCGT
373337 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
373370 TGCGATTTTCATTTCCGCATTGCGA
1 TGCGATTTTCATTT-CGCATTGCGA
373395 AATGTAATGG
Statistics
Matches: 104, Mismatches: 13, Indels: 23
0.74 0.09 0.16
Matches are distributed among these distances:
31 9 0.09
32 5 0.05
33 49 0.47
34 10 0.10
35 5 0.05
36 4 0.04
37 2 0.02
38 8 0.08
39 3 0.03
40 9 0.09
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:373283 original size:52 final size:52
Alignment explanation
Indices: 373227--373394 Score: 309
Period size: 52 Copynumber: 3.2 Consensus size: 52
373217 AACGAGAGAA
* *
373227 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
373279 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
373331 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
373383 TCCGCATTGCGA
1 T-CGCATTGCGA
373395 AATGTAATGG
Statistics
Matches: 113, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
52 103 0.91
53 10 0.09
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (52 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:373477 original size:19 final size:19
Alignment explanation
Indices: 373453--373550 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
373443 AAAATTGACT
373453 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
373472 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
373491 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
373505 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
373524 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
373544 ATCGCAA
1 ATCGCAA
373551 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:373582 original size:53 final size:53
Alignment explanation
Indices: 373453--373569 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
373443 AAAATTGACT
373453 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
373505 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
373558 ATCGCAATGCGA
1 ATCGCAATGCGA
373570 TTTTCATTTC
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.45
53 35 0.55
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:375905 original size:12 final size:12
Alignment explanation
Indices: 375888--375912 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
375878 TCTTCGGGGA
375888 CTTTTTCTTCTT
1 CTTTTTCTTCTT
375900 CTTTTTCTTCTT
1 CTTTTTCTTCTT
375912 C
1 C
375913 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:376121 original size:24 final size:24
Alignment explanation
Indices: 376087--376133 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
376077 CTGAAACATC
376087 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
376111 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
376134 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:376844 original size:20 final size:20
Alignment explanation
Indices: 376816--377065 Score: 268
Period size: 20 Copynumber: 12.5 Consensus size: 20
376806 AAATTTCAGT
* *
376816 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
376836 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
376856 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
376876 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
376896 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
376916 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
376936 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
376956 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
376976 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
376996 GTTGCGATATACGGATACAC
1 GTTGCGATTTACGGATTCTC
* *
377016 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCTC
* ** *
377036 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCTC
377056 GTTGCGATTT
1 GTTGCGATTT
377066 TGGAAAATCG
Statistics
Matches: 200, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 199 1.00
21 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCTC
Found at i:377082 original size:21 final size:21
Alignment explanation
Indices: 377052--377134 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
377042 ATTTTCATAT
*
377052 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
377073 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
377094 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
377115 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
377135 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:377125 original size:42 final size:43
Alignment explanation
Indices: 377032--377130 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
377022 ATTTATGTGT
* *
377032 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
377073 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
377115 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
377131 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:389365 original size:21 final size:21
Alignment explanation
Indices: 389337--389376 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
389327 TTTTTTATAA
389337 TTTAACTTACAATT-AATTTT
1 TTTAACTTACAATTCAATTTT
*
389357 TTTATACTTAGAATTCAATT
1 TTTA-ACTTACAATTCAATT
389377 GATTTAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TTTAACTTACAATTCAATTTT
Found at i:391345 original size:38 final size:40
Alignment explanation
Indices: 391263--391350 Score: 112
Period size: 38 Copynumber: 2.3 Consensus size: 40
391253 TCGGGCCGGG
391263 TATATATATATATTTAAATTAAATATATAAATAGTATATA
1 TATATATATATATTTAAATTAAATATATAAATAGTATATA
* * * *
391303 TATATAT-TA-ATTTAAATTAAATTTATTATTATTAT-TA
1 TATATATATATATTTAAATTAAATATATAAATAGTATATA
391340 T-TATATATATA
1 TATATATATATA
391351 AAATAATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
36 5 0.12
37 5 0.12
38 23 0.55
39 2 0.05
40 7 0.17
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (40 bp):
TATATATATATATTTAAATTAAATATATAAATAGTATATA
Found at i:391388 original size:12 final size:11
Alignment explanation
Indices: 391371--391414 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 11
391361 TTTTAATATT
391371 TATCGGGACGGG
1 TATCGGG-CGGG
391383 TATCGGGCTGGG
1 TATCGGGC-GGG
391395 TATCGGGTCGGG
1 TATCGGG-CGGG
391407 TAATCGGG
1 T-ATCGGG
391415 GCGAGGATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 1 0.03
12 21 0.72
13 7 0.24
ACGTcount: A:0.14, C:0.16, G:0.48, T:0.23
Consensus pattern (11 bp):
TATCGGGCGGG
Found at i:394704 original size:103 final size:103
Alignment explanation
Indices: 394273--394696 Score: 830
Period size: 103 Copynumber: 4.1 Consensus size: 103
394263 GTCGAGCGTC
*
394273 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
394338 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
394376 TATGTGGTCCTTCGGGAAATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
394441 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
394479 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
394544 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
394582 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
394647 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
394685 TATGTGGTCCTT
1 TATGTGGTCCTT
394697 ATGGACATTA
Statistics
Matches: 318, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 318 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:394743 original size:23 final size:23
Alignment explanation
Indices: 394713--394772 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
394703 ATTATTATAT
394713 GGCACTACGGTGCAACTCTACGC
1 GGCACTACGGTGCAACTCTACGC
* * *
394736 GGCACTACGGTGCAATTCTATGT
1 GGCACTACGGTGCAACTCTACGC
*
394759 GGCACTTCGGTGCA
1 GGCACTACGGTGCA
394773 TTTATATGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (23 bp):
GGCACTACGGTGCAACTCTACGC
Found at i:394780 original size:23 final size:23
Alignment explanation
Indices: 394703--394780 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
394693 CCTTATGGAC
*
394703 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * *
394727 ACTCTACGCGGCACTACGGTGCA
1 ATTATATGTGGCACTACGGTGCA
* *
394750 ATTCTATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
394773 TTTATATG
1 ATTATATG
394781 AGCTGTGGTG
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 41 0.95
24 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:398103 original size:23 final size:22
Alignment explanation
Indices: 398059--398103 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
398049 AATGCCAGAG
*
398059 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
398081 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
398104 AAAATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:399685 original size:103 final size:103
Alignment explanation
Indices: 399506--399929 Score: 803
Period size: 103 Copynumber: 4.1 Consensus size: 103
399496 GTCGAGCGTC
*
399506 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
399571 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
* * *
399609 TATGTGGTCCTTCGAGAAATATATGTGTTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
399674 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
399712 TATGTGGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
399777 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
399815 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
399880 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
399918 TATGTGGTCCTT
1 TATGTGGTCCTT
399930 ATGGACATTA
Statistics
Matches: 312, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 312 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:399976 original size:23 final size:23
Alignment explanation
Indices: 399946--400003 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
399936 ATTATTATAT
399946 GGCACTACGGTGCAACTCTACGC
1 GGCACTACGGTGCAACTCTACGC
* * *
399969 GGCACTACGGTGCAATTCTATGT
1 GGCACTACGGTGCAACTCTACGC
*
399992 GGCACTTCGGTG
1 GGCACTACGGTG
400004 TATTTATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAACTCTACGC
Found at i:400013 original size:23 final size:23
Alignment explanation
Indices: 399936--400013 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
399926 CCTTATGGAC
*
399936 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * *
399960 ACTCTACGCGGCACTACGGTGCA
1 ATTATATGTGGCACTACGGTGCA
* * *
399983 ATTCTATGTGGCACTTCGGTGTA
1 ATTATATGTGGCACTACGGTGCA
*
400006 TTTATATG
1 ATTATATG
400014 AGCTGTGGTG
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
23 40 0.95
24 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:402341 original size:2 final size:2
Alignment explanation
Indices: 402334--402368 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
402324 CATGATATGA
402334 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
402369 AAGGAAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:403350 original size:24 final size:22
Alignment explanation
Indices: 403305--403350 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
403295 AATGCCAGAG
*
403305 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
403327 GGGAACCGATTTCCCCCTAAAGGA
1 GGGAACCGA-TACCCCC-AAAGGA
403351 AAAATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 6 0.30
24 5 0.25
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:405184 original size:103 final size:103
Alignment explanation
Indices: 404753--405176 Score: 794
Period size: 103 Copynumber: 4.1 Consensus size: 103
404743 GTCGAGGTTC
404753 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
404818 TTGATCCCTAGTATATGTATATGATTTTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
* * *
404856 TATATGGTCTTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
404921 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
404959 TATGTGGTCCTTCGGGATATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
405024 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
405062 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
405127 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
*
405165 TATGTAGTCCTT
1 TATGTGGTCCTT
405177 ATGGACATTA
Statistics
Matches: 313, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 313 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:405223 original size:23 final size:23
Alignment explanation
Indices: 405193--405249 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
405183 ATTATTATAT
405193 GGCACTACGGTGCAACTCTACGC
1 GGCACTACGGTGCAACTCTACGC
* * * *
405216 GGCACTACGATGCAATTCTATGT
1 GGCACTACGGTGCAACTCTACGC
*
405239 GGCACTTCGGT
1 GGCACTACGGT
405250 TCATTTATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAACTCTACGC
Found at i:408092 original size:12 final size:12
Alignment explanation
Indices: 408067--408136 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
408057 ACGGAGATAT
* *
408067 CAGAAATCAAAA
1 CAGAATTCAGAA
408079 CAGAATTCAGAA
1 CAGAATTCAGAA
408091 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
408103 CAGAATCCAGAT
1 CAGAATTCAGAA
* *
408115 CGGAAATCAGAA
1 CAGAATTCAGAA
*
408127 CAAAATTCAG
1 CAGAATTCAG
408137 GTAATGTATC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
11 2 0.04
12 41 0.91
13 2 0.04
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:408094 original size:24 final size:24
Alignment explanation
Indices: 408067--408136 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
408057 ACGGAGATAT
*
408067 CAGAAATCAAAACAGAATTCAGAA
1 CAGAAATCAGAACAGAATTCAGAA
* * *
408091 CAGATATCAGAACAGAATCCAGAT
1 CAGAAATCAGAACAGAATTCAGAA
* *
408115 CGGAAATCAGAACAAAATTCAG
1 CAGAAATCAGAACAGAATTCAG
408137 GTAATGTATC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATTCAGAA
Found at i:408171 original size:24 final size:25
Alignment explanation
Indices: 408069--408173 Score: 78
Period size: 24 Copynumber: 4.4 Consensus size: 25
408059 GGAGATATCA
* * *
408069 GAAATCAAAACAGAATTC-AGAACA
1 GAAATCAGAACAGAATTCAAGATCG
* *
408093 GATATCAGAACAGAA-TCCAGATCG
1 GAAATCAGAACAGAATTCAAGATCG
* *
408117 GAAATCAGAACAAAATTCAGGTAAT--
1 GAAATCAGAACAGAATTCAAG--ATCG
*
408142 G-TATCAGAACAGAATTCAAG-TCG
1 GAAATCAGAACAGAATTCAAGATCG
408165 GAAATCAGA
1 GAAATCAGA
408174 TAAAATATTT
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
21 1 0.02
23 3 0.05
24 52 0.84
25 4 0.06
27 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (25 bp):
GAAATCAGAACAGAATTCAAGATCG
Found at i:412654 original size:2 final size:2
Alignment explanation
Indices: 412649--412715 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
412639 TTTTTAAAAC
412649 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
412691 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
412716 CCCCCATCCC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:412903 original size:12 final size:12
Alignment explanation
Indices: 412882--412981 Score: 52
Period size: 12 Copynumber: 8.8 Consensus size: 12
412872 ACGGAGATAT
*
412882 CAGAAATCAAAA
1 CAGAATTCAAAA
412894 CAGAATTCAAAA
1 CAGAATTCAAAA
412906 CAG-ATATC--AA
1 CAGAAT-TCAAAA
412916 -A-AA-TCAAAA
1 CAGAATTCAAAA
*
412925 CAGAATTCAGAA
1 CAGAATTCAAAA
**
412937 CAG-ATATCAGCA
1 CAGAAT-TCAAAA
* *
412949 CAGAATCCAAAG
1 CAGAATTCAAAA
* *
412961 CAGAAATCAGAA
1 CAGAATTCAAAA
*
412973 CATAATTCA
1 CAGAATTCA
412982 GGTACTGTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
7 2 0.03
9 4 0.06
10 3 0.05
11 6 0.09
12 49 0.74
13 2 0.03
ACGTcount: A:0.55, C:0.19, G:0.11, T:0.15
Consensus pattern (12 bp):
CAGAATTCAAAA
Found at i:412914 original size:31 final size:31
Alignment explanation
Indices: 412876--412946 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
412866 CATTAAACGG
412876 AGATATCAGAAATCAAAACAGAATTCAAAAC
1 AGATATCAGAAATCAAAACAGAATTCAAAAC
* *
412907 AGATATCAAAAATCAAAACAGAATTCAGAAC
1 AGATATCAGAAATCAAAACAGAATTCAAAAC
412938 AGATATCAG
1 AGATATCAG
412947 CACAGAATCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.56, C:0.15, G:0.11, T:0.17
Consensus pattern (31 bp):
AGATATCAGAAATCAAAACAGAATTCAAAAC
Found at i:412945 original size:24 final size:24
Alignment explanation
Indices: 412918--413005 Score: 72
Period size: 24 Copynumber: 3.7 Consensus size: 24
412908 GATATCAAAA
*
412918 ATCAAAACAGAATTCAGAACAGAT
1 ATCAGAACAGAATTCAGAACAGAT
* * *
412942 ATCAGCACAGAATCCA-AAGCAGAA
1 ATCAGAACAGAATTCAGAA-CAGAT
* * *
412966 ATCAGAACATAATTCAGGTACTG-T
1 ATCAGAACAGAATTCA-GAACAGAT
*
412990 ATCATAACAGAATTCA
1 ATCAGAACAGAATTCA
413006 AGTCGGAAAT
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
23 2 0.04
24 44 0.90
25 2 0.04
26 1 0.02
ACGTcount: A:0.48, C:0.19, G:0.14, T:0.19
Consensus pattern (24 bp):
ATCAGAACAGAATTCAGAACAGAT
Found at i:431554 original size:15 final size:16
Alignment explanation
Indices: 431528--431568 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
431518 GTTAGAAGAT
431528 AAATAA-TTAAATTAA
1 AAATAATTTAAATTAA
*
431543 ATA-AATTTAAATTAA
1 AAATAATTTAAATTAA
431558 AAATAATTTAA
1 AAATAATTTAA
431569 TCTAATGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 2 0.09
15 13 0.59
16 7 0.32
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATAATTTAAATTAA
Found at i:432018 original size:15 final size:15
Alignment explanation
Indices: 431998--432027 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
431988 AGATAAATAA
*
431998 TTAAATTAAATAAAT
1 TTAAATTAAAAAAAT
432013 TTAAATTAAAAAAAT
1 TTAAATTAAAAAAAT
432028 ATCATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAATTAAAAAAAT
Found at i:432632 original size:14 final size:13
Alignment explanation
Indices: 432610--432650 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
432600 CTAAAAGGTC
*
432610 AAAAATATTAGAT
1 AAAAATATTAAAT
432623 AAAAAGTATTAAAT
1 AAAAA-TATTAAAT
432637 --AAATATTAAAT
1 AAAAATATTAAAT
432648 AAA
1 AAA
432651 TGAAATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
11 8 0.33
12 3 0.12
13 6 0.25
14 7 0.29
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (13 bp):
AAAAATATTAAAT
Found at i:433278 original size:29 final size:29
Alignment explanation
Indices: 433236--433303 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
433226 TTCCTCGTAA
433236 GACAGTTTCCACCGTCGCTTGGCAAACAC
1 GACAGTTTCCACCGTCGCTTGGCAAACAC
433265 GACAGTTTCCACCGTCGCTTGGCAAACAC
1 GACAGTTTCCACCGTCGCTTGGCAAACAC
433294 GACAGTTTCC
1 GACAGTTTCC
433304 TGTCCATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.22
Consensus pattern (29 bp):
GACAGTTTCCACCGTCGCTTGGCAAACAC
Found at i:435362 original size:106 final size:106
Alignment explanation
Indices: 435177--435634 Score: 736
Period size: 106 Copynumber: 4.3 Consensus size: 106
435167 TATTGTTCCA
* * ** * * * *
435177 AGTCCAATTTCCTCCGCCGTGAAGTTGAAATTGGCTCTGGAACTGTGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
435242 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
435283 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGTTCTGAAATTGAGAAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
* * *
435348 CAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGCCTCG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
435389 AGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAGATTGAGAAATTATTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
435454 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
435495 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCAGAAATTGGGAAATTGATTATTGATAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
435560 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
435601 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
435635 AAAATTGTTT
Statistics
Matches: 324, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 324 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (106 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:435547 original size:212 final size:212
Alignment explanation
Indices: 435177--436586 Score: 2027
Period size: 212 Copynumber: 6.8 Consensus size: 212
435167 TATTGTTCCA
* * * * * *
435177 AGTCCAATTTCCTCCGCCGTGAAGTTGAAATTGGCTCTG-GAACTGTGAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAG-ATTGAGAAATTGTTTATTGACAA
435241 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * *
435306 GTTGAAATTGGTTCTGAAATTGAGAAATTGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGT
130 GTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* *
435371 TGAACTTGCGTTGCCTCG
195 TGAACTTGCGTTGTCTGG
* *
435389 AGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAGATTGAGAAATTATTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
435454 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
* * *
435519 TTGAAATTGGCTCAGAAATTGGGAAATTGATTATTGATAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
435584 GAACTTGCGTTGTCTGG
196 GAACTTGCGTTGTCTGG
*
435601 AGTCCAATATCCTTCGTTGTGAAGTTGAAA-----T-T--G---GA-AAATTGTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
*
435654 CAGCGGTCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
435719 TTGAAATT-G----G--A-----AAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
435772 GAACTTGCGTTGTCTGG
196 GAACTTGCGTTGTCTGG
* *
435789 AGTCCAATATCCTTCGTTGTGAAGTTGAAA-----T-T--G---G-GAAATTGTTTATTGACAGC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
* * * *
435842 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTTTGGAGTCCAATATCCTTCGCTATGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
**
435907 TCAAAATTGGCTCTGAAATTGGGAAA-TGTTTATTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 TTGAAATTGGCTCTGAAATTGGGAAATTGTTTA-TTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*
435971 TGAACTTGCGTTGTCTTG
195 TGAACTTGCGTTGTCTGG
* *
435989 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
* *
436054 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCGATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
* * *
436119 TTGAAATTGGCTCTGAAATTAGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
*
436184 GAACTTGTGTTGTCTGG
196 GAACTTGCGTTGTCTGG
* * * * * *
436201 AGTCCGATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
* * *
436266 CAGTGG-CCTCTTCGCCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CAGCGGTCC-CTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* *
436330 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTTTTTGACAACCAGCGGTCCCTTCGTCGTGAAG
130 GTTGAAATTGGCTCTGAAATTGGGAAATTG-TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAG
*
436395 TTGAACTTGTGTTGTCTGG
194 TTGAACTTGCGTTGTCTGG
** * *
436414 AGTCCAATATCCTTCGCTGTGAAGCAGAAATTGGCTCTGAAATTGAGAAA-TGTTTGTTGACAAC
1 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
*
436478 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
436543 TTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAG
131 TTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAG
436587 TTGTTTGTTG
Statistics
Matches: 1096, Mismatches: 71, Indels: 63
0.89 0.06 0.05
Matches are distributed among these distances:
188 174 0.16
189 1 0.00
193 2 0.00
195 2 0.00
199 7 0.01
200 169 0.15
201 2 0.00
204 1 0.00
205 1 0.00
206 2 0.00
207 1 0.00
211 17 0.02
212 613 0.56
213 104 0.09
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (212 bp):
AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAGATTGAGAAATTGTTTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
TTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
GAACTTGCGTTGTCTGG
Found at i:435629 original size:43 final size:43
Alignment explanation
Indices: 435568--435817 Score: 153
Period size: 43 Copynumber: 5.4 Consensus size: 43
435558 ACCAGCGGTC
435568 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * * ** ***
435611 CCTTCGTTGTGAAGTTGAAATTG-GAAAATTGTTTATTGACAACCAGCGGT
1 CCTTCGTCGTGAAGTTGAACTTGCG----TTG--TCTGGA-GTCCA-ATAT
435661 CCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 CC-TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * * ** ***
435705 CCTTCGTTGTGAAGTTGAAATTG-GAAAATTGTTTATTGACAACCAGCGGT
1 CCTTCGTCGTGAAGTTGAACTTGCG----TTG--TCTGGA-GTCCA-ATAT
435755 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 -CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
*
435799 CCTTCGTTGTGAAGTTGAA
1 CCTTCGTCGTGAAGTTGAA
435818 ATTGGGAAAT
Statistics
Matches: 150, Mismatches: 37, Indels: 40
0.66 0.16 0.18
Matches are distributed among these distances:
42 2 0.01
43 58 0.39
44 4 0.03
45 6 0.04
46 14 0.09
48 14 0.09
49 6 0.04
50 4 0.03
51 40 0.27
52 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (43 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
Found at i:435694 original size:94 final size:96
Alignment explanation
Indices: 435543--436552 Score: 1143
Period size: 106 Copynumber: 10.0 Consensus size: 96
435533 GAAATTGGGA
* *
435543 AATTGATTATTGATAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
1 AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
435608 TATCCTTCGTTGTGAAGTTGAAATTGG-AA-
66 TATCCTTCGTTGTGAAGTTGAAATTGGAAAG
*
435637 AATTGTTTATTGACAACCAGCGGTCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
1 AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
435702 TATCCTTCGTTGTGAAGTTGAAATTGG-AA-
66 TATCCTTCGTTGTGAAGTTGAAATTGGAAAG
435731 AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
1 AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
*
435796 TATCCTTCGTTGTGAAGTTGAAATTGG-GA-
66 TATCCTTCGTTGTGAAGTTGAAATTGGAAAG
* * *
435825 AATTGTTTATTGACAGCCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTTTGGAGTCCAA
1 AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
* * **
435890 TATCCTTCGCTATGAAGTCAAAATTGGCTCTGAAATTGGG
66 TATCCTTCGTTGTGAAGTTGAAATT-G----GAAA----G
* *
435930 AAATGTTTATTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCA
1 AATTGTTTA-TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
*
435995 ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG
65 ATATCCTTCGTTGTGAAGTTGAAATT-G----G-AA---AG
* *
436036 AAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCG
1 AA-TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
436101 ATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTAGG
65 ATATCCTTCGTTGTGAAGTTGAAATT-G----G-AA--A-G
* * *
436142 AAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCG
1 AA-TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
436207 ATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG
65 ATATCCTTCGTTGTGAAGTTGAAATT-G----GAAA----G
* * * *
436248 AAGTTATTTATTGACAACCAGTGG-CCTCTTCGCCGTGAAGTTGAACTTGTGTTGTCTGGAGTCC
1 AA-TTGTTTATTGACAACCAGCGGTCC-CTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
436312 AATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGG
64 AATATCCTTCGTTGTGAAGTTGAAATT-G----GAAA----G
* *
436354 AAGTTGTTTTTTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCC
1 AA-TTG-TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
* **
436419 AATATCCTTCGCTGTGAAGCAGAAATTGGCTCTGAAATTGAG
64 AATATCCTTCGTTGTGAAGTTGAAATT-G----G-AA---AG
* *
436461 AAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
1 AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
*
436526 TATCCTTCGCTGTGAAGTTGAAATTGG
66 TATCCTTCGTTGTGAAGTTGAAATTGG
436553 CTCTGAAATT
Statistics
Matches: 845, Mismatches: 43, Indels: 50
0.90 0.05 0.05
Matches are distributed among these distances:
94 266 0.31
95 1 0.00
99 1 0.00
100 2 0.00
103 1 0.00
104 1 0.00
105 95 0.11
106 378 0.45
107 94 0.11
108 4 0.00
110 1 0.00
111 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (96 bp):
AATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAA
TATCCTTCGTTGTGAAGTTGAAATTGGAAAG
Found at i:435999 original size:106 final size:106
Alignment explanation
Indices: 435814--436586 Score: 1205
Period size: 106 Copynumber: 7.3 Consensus size: 106
435804 GTTGTGAAGT
*
435814 TGAAATTGGGAA-ATTGTTTATTGACAGCCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTG
1 TGAAATTGGGAAGA-TGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTG
* * **
435878 TTTGGAGTCCAATATCCTTCGCTATGAAGTCAAAATTGGCTC
65 TCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
*
435920 TGAAATTGGGAA-ATGTTTATTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTG
1 TGAAATTGGGAAGATGTTTA-TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTG
*
435984 TCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
65 TCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* *
436026 TGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGT
1 TGAAATTGGGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGT
* *
436091 CTGGAGTCCGATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* * *
436132 TGAAATTAGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGT
1 TGAAATTGGGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGT
* *
436197 CTGGAGTCCGATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* * * *
436238 TGAAATTGGGAAGTTATTTATTGACAACCAGTGG-CCTCTTCGCCGTGAAGTTGAACTTGTGTTG
1 TGAAATTGGGAAGATGTTTATTGACAACCAGCGGTCC-CTTCGTCGTGAAGTTGAACTTGTGTTG
*
436302 TCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
65 TCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* *
436344 TGAAATTGGGAAGTTGTTTTTTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTG
1 TGAAATTGGGAAGATG-TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTG
**
436409 TCTGGAGTCCAATATCCTTCGCTGTGAAGCAGAAATTGGCTC
65 TCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* * *
436451 TGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGT
436515 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
*
436556 TGAAATTGAGAA-ATTGTTTATTGACAACCAG
1 TGAAATTGGGAAGA-TGTTTATTGACAACCAG
436587 TTGTTTGTTG
Statistics
Matches: 627, Mismatches: 34, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
105 107 0.17
106 420 0.67
107 98 0.16
108 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
TGAAATTGGGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGT
CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
Found at i:436587 original size:318 final size:317
Alignment explanation
Indices: 435177--436586 Score: 2023
Period size: 318 Copynumber: 4.5 Consensus size: 317
435167 TATTGTTCCA
* * ** * * * *
435177 AGTCCAATTTCCTCCGCCGTGAAGTTGAAATTGGCTCTGGAACTGTGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAA-TGTTTATTGACAAC
435242 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
* *
435307 TTGAAATTGGTTCTGAAATTGAGAAATTGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGTT
130 TTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
* * * *
435372 GAACTTGCGTTGCCTCGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAGATTGAGA
195 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
* *
435437 AATTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
260 AGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * * *
435495 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCAGAAATTGGGAAATTGATTATTGATAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAA-TGTTTATTGACAAC
435560 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
65 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
435625 TTGAAA-----T-TG-----GA-AAATTGTTTATTGACAACCAGCGGTCCTTTCGTCGTGAAGTT
130 TTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
*
435678 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT-G----G--A---A-A
195 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
435732 A-TTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
260 AGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
435789 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG----GAAA-T------TGTTTATTGACAGCC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTATTGACAACC
* * * *
435843 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTTTGGAGTCCAATATCCTTCGCTATGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
** *
435908 CAAAATTGGCTCTGAAATTGGGAAA-TGTTTATTTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TGAAATTGGCTCTGAAATTGAGAAATTGTTTA-TTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
*
435972 GAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
195 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGA
*
436037 AGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGG
260 AGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
436095 AGTCCGATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-AGGAAGTTATTTATTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGA-GAA-ATGTTTATTGACAA
* *
436159 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCGATATCCTTCGTTGTGAA
64 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * * * *
436224 GTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGACAACCAGTGG-CCTCTTCGCCGTGAAG
129 GTTGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCC-CTTCGTCGTGAAG
* * *
436288 TTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGG
193 TTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGA
* *
436353 GAAGTTGTTTTTTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGG
258 GAAGTTG-TTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* ** *
436414 AGTCCAATATCCTTCGCTGTGAAGCAGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTATTGACAACC
*
436479 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
436544 TGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAG
131 TGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAG
436587 TTGTTTGTTG
Statistics
Matches: 988, Mismatches: 63, Indels: 82
0.87 0.06 0.07
Matches are distributed among these distances:
282 76 0.08
287 1 0.00
288 2 0.00
289 1 0.00
290 4 0.00
293 7 0.01
294 170 0.17
295 3 0.00
296 1 0.00
299 2 0.00
301 2 0.00
304 1 0.00
305 3 0.00
306 173 0.18
307 2 0.00
310 4 0.00
311 1 0.00
312 2 0.00
313 1 0.00
317 2 0.00
318 429 0.43
319 100 0.10
320 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (317 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTATTGACAACC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGT
TGAAATTGGCTCTGAAATTGAGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
AACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
GTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:440443 original size:14 final size:13
Alignment explanation
Indices: 440421--440461 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
440411 CTAAAAGGTC
*
440421 AAAAATATTAGAT
1 AAAAATATTAAAT
440434 AAAAAGTATTAAAT
1 AAAAA-TATTAAAT
440448 --AAATATTAAAT
1 AAAAATATTAAAT
440459 AAA
1 AAA
440462 TGAAATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
11 8 0.33
12 3 0.12
13 6 0.25
14 7 0.29
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (13 bp):
AAAAATATTAAAT
Found at i:441089 original size:29 final size:29
Alignment explanation
Indices: 441047--441114 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
441037 TTCCTCGTAA
441047 GACAGTTTCCACCGTCGCTTGGCAAACAC
1 GACAGTTTCCACCGTCGCTTGGCAAACAC
441076 GACAGTTTCCACCGTCGCTTGGCAAACAC
1 GACAGTTTCCACCGTCGCTTGGCAAACAC
441105 GACAGTTTCC
1 GACAGTTTCC
441115 TGTCCATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.22
Consensus pattern (29 bp):
GACAGTTTCCACCGTCGCTTGGCAAACAC
Found at i:445653 original size:37 final size:37
Alignment explanation
Indices: 445612--445723 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
445602 AACATAACGT
*
445612 TAGAGTTTTACTAAGATTCAAATTCCTAAAAATAGGA
1 TAGAGTTCTACTAAGATTCAAATTCCTAAAAATAGGA
* * * *
445649 TAGAGTCCTACTAGGATTCAAACTCCTAAAAATATGA
1 TAGAGTTCTACTAAGATTCAAATTCCTAAAAATAGGA
*
445686 TAGAGTTCTACTATGATTCAAATTCCTAAAAATAGGA
1 TAGAGTTCTACTAAGATTCAAATTCCTAAAAATAGGA
445723 T
1 T
445724 CCAGAAGCAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (37 bp):
TAGAGTTCTACTAAGATTCAAATTCCTAAAAATAGGA
Found at i:446279 original size:2 final size:2
Alignment explanation
Indices: 446274--446309 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
446264 TTTAGATTAC
446274 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
446310 GTTAATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:446345 original size:40 final size:38
Alignment explanation
Indices: 446297--446387 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 38
446287 TATATATATA
*
446297 TATATATATATATGTTAATTTTTATTATCTGTTTTATTAAT
1 TATATATATATAT-TTAATATTT-TTATCT-TTTTATTAAT
* * * *
446338 T-TTTATATATATTTACTATTTTTATGTTTTTATTTAT
1 TATATATATATATTTAATATTTTTATCTTTTTATTAAT
446375 TATATATATATAT
1 TATATATATATAT
446388 ATATATATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
37 10 0.23
38 15 0.35
39 7 0.16
40 10 0.23
41 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (38 bp):
TATATATATATATTTAATATTTTTATCTTTTTATTAAT
Found at i:446375 original size:4 final size:4
Alignment explanation
Indices: 446366--446453 Score: 56
Period size: 4 Copynumber: 21.8 Consensus size: 4
446356 TTTTTATGTT
* * * * * *
446366 TTTA TTTA TTATA TATA TATA TATA TATA TATTA TTTT TTTA CTT- TTTA
1 TTTA TTTA TT-TA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA
*
446415 -TTA -TTA TTTTA TTTA TTTA TTTA TTTTA TTTA TATA TTT
1 TTTA TTTA -TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTT
446454 TTTTTCTTCT
Statistics
Matches: 70, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
3 8 0.11
4 49 0.70
5 13 0.19
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:446431 original size:56 final size:52
Alignment explanation
Indices: 446349--446467 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 52
446339 TTTATATATA
*
446349 TTTACTATTTTTATGTTTTTATTTATTATATATATATATATATATATATTATTTT
1 TTTACTTTTTTTATGTTTTTATTTATT-TATATAT-TATATATATATATT-TTTT
* * *
446404 TTTACTTTTTATTAT-TATTTTATTTATTTATTTATTTTATTTATATATTTTTT
1 TTTACTTTTT-TTATGT-TTTTATTTATTTATATATTATATATATATATTTTTT
*
446457 TTCTTCTTTTT
1 TT-TACTTTTT
446468 CTTTATTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
53 6 0.11
54 19 0.34
55 16 0.29
56 15 0.27
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.71
Consensus pattern (52 bp):
TTTACTTTTTTTATGTTTTTATTTATTTATATATTATATATATATATTTTTT
Found at i:446436 original size:13 final size:13
Alignment explanation
Indices: 446366--446498 Score: 59
Period size: 13 Copynumber: 10.5 Consensus size: 13
446356 TTTTTATGTT
*
446366 TTTATTTATTATA
1 TTTATTTATTTTA
* * *
446379 TATATATA-TATA
1 TTTATTTATTTTA
*
446391 TATATATTATTTT-
1 TTTAT-TTATTTTA
446404 TTTACTTT-TTATTA
1 TTTA-TTTATT-TTA
446418 -TTATTT-TATTTA
1 TTTATTTAT-TTTA
446430 TTTATTTATTTTA
1 TTTATTTATTTTA
* *
446443 TTTATATATTTTT
1 TTTATTTATTTTA
* *
446456 TTTCTTCT-TTTTC
1 TTTATT-TATTTTA
446469 TTTA-TT-TTTTA
1 TTTATTTATTTTA
* *
446480 -ATATTTGTTTTA
1 TTTATTTATTTTA
446492 TTTATTT
1 TTTATTT
446499 TACTTACTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
10 2 0.02
11 7 0.07
12 24 0.26
13 56 0.60
14 5 0.05
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:446452 original size:8 final size:8
Alignment explanation
Indices: 446250--446453 Score: 52
Period size: 8 Copynumber: 25.9 Consensus size: 8
446240 TACTTTAGTG
446250 TATATTTA
1 TATATTTA
* *
446258 TATTTTTT
1 TATATTTA
*
446266 TAGA-TTA
1 TATATTTA
* *
446273 CATATATA
1 TATATTTA
*
446281 TATATATA
1 TATATTTA
*
446289 TATATATA
1 TATATTTA
*
446297 TATATATA
1 TATATTTA
446305 TATATGTTA
1 TATAT-TTA
*
446314 -ATTTTTA
1 TATATTTA
446321 T-TATCTGT-
1 TATAT-T-TA
* *
446329 TTTATTAA
1 TATATTTA
*
446337 T-TTTTATA
1 TATATT-TA
446345 TATATTTA
1 TATATTTA
*
446353 CTATTTTTA
1 -TATATTTA
* *
446362 TGTTTTTA
1 TATATTTA
*
446370 TTTA-TTA
1 TATATTTA
*
446377 TATATATA
1 TATATTTA
*
446385 TATATATA
1 TATATTTA
446393 TATA-TTA
1 TATATTTA
*
446400 T-T-TTTT
1 TATATTTA
*
446406 TACTTTTTA
1 TA-TATTTA
446415 T-TA-TTA
1 TATATTTA
*
446421 TTTTATTTA
1 -TATATTTA
*
446430 TTTATTTA
1 TATATTTA
*
446438 TTTTATTTA
1 -TATATTTA
446447 TATATTT
1 TATATTT
446454 TTTTTCTTCT
Statistics
Matches: 150, Mismatches: 27, Indels: 38
0.70 0.13 0.18
Matches are distributed among these distances:
6 7 0.05
7 23 0.15
8 89 0.59
9 31 0.21
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TATATTTA
Found at i:449544 original size:14 final size:14
Alignment explanation
Indices: 449521--449596 Score: 59
Period size: 14 Copynumber: 5.4 Consensus size: 14
449511 CAATCAGAAC
449521 AAAAAGAAAAAAGAG
1 AAAAA-AAAAAAGAG
449536 AAAAAAAAACAA-AG
1 AAAAAAAAA-AAGAG
**
449550 -AAAAAGCAAAGAG
1 AAAAAAAAAAAGAG
* *
449563 AAAATAAAAGAGAG
1 AAAAAAAAAAAGAG
449577 AAACAAAAACAAAGA-
1 AAA-AAAAA-AAAGAG
449592 AAAAA
1 AAAAA
449597 GTGAAGAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
12 2 0.04
13 8 0.17
14 20 0.42
15 14 0.29
16 4 0.08
ACGTcount: A:0.79, C:0.05, G:0.14, T:0.01
Consensus pattern (14 bp):
AAAAAAAAAAAGAG
Found at i:450736 original size:32 final size:32
Alignment explanation
Indices: 450666--450737 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
450656 GCATCTTTGA
***
450666 AGATTCAACATCAAATATTGGGGCATTTTTTT
1 AGATTCAACATCAAATATTGGGGCATTTTGGG
450698 AGATTCAACAT-AGAATATTGGGGCATCTTTGGG
1 AGATTCAACATCA-AATATTGGGGCAT-TTTGGG
450731 A-ATTCAA
1 AGATTCAA
450738 TATCCTGACG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 1 0.03
32 30 0.86
33 4 0.11
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (32 bp):
AGATTCAACATCAAATATTGGGGCATTTTGGG
Found at i:451557 original size:106 final size:106
Alignment explanation
Indices: 451372--451740 Score: 517
Period size: 106 Copynumber: 3.5 Consensus size: 106
451362 GACGAATGGG
*
451372 CTTCCCAATTTCATAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGC
451437 TCAACTTCACAACGAAGGGGCGGCTGGTTGTCAACAAACAA
66 TCAACTTCACAACGAAGGGGCGGCTGGTTGTCAACAAACAA
* * * *
451478 CTTCCCAATTTCAGAGCCAATTTCAACTACATAGCGAAGGATATTGGACTCCAGACAACACAAGC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGC
* *
451543 TCAACTTCACAACGAAGGGGCGACTGATTGTCAACAAACAA
66 TCAACTTCACAACGAAGGGGCGGCTGGTTGTCAACAAACAA
* * *
451584 CTTCCCAGTTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACT-AGAGACAACACAAG
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCA-AGACAACACAAG
** * *
451648 CTCAACTTCACAGTGAAGGGGCGG-TTGTCTGTCAACAAATAA
65 CTCAACTTCACAACGAAGGGGCGGCTGGT-TGTCAACAAACAA
* * * * ** *
451690 TTTCCCAATTCCATAGACAATTTCAACTTCACGGCGAAGGATATTGAACTC
1 CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
451741 GAAACAATAC
Statistics
Matches: 231, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
105 2 0.01
106 229 0.99
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (106 bp):
CTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGC
TCAACTTCACAACGAAGGGGCGGCTGGTTGTCAACAAACAA
Found at i:452139 original size:100 final size:101
Alignment explanation
Indices: 452019--452264 Score: 390
Period size: 100 Copynumber: 2.4 Consensus size: 101
452009 AATTTTCTCA
452019 AAACAAAATTTTGTCTCTCTTGAGACAGTTTCCATTGAAACAAAATATTTGAATATGTTTTCCTT
1 AAACAAAATTTTGTCTCTCTTGAGACAGTTTCC-TTGAAACAAAATATTTGAATATGTTTTCCTT
452084 GAAACTAATTTCGTCTCCCTTGAGA-CAGTTTC-CTTG
65 GAAACTAATTTCGTCTCCCTTGAGATC-GTTTCTCTTG
452120 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTT
1 AAACAAAATTTTGTCTCTCTTGAGACAGTTT-CCTTGAAACAAAATATTTGAATATGTTTTCCTT
* *
452184 GAAACTAATTTTGTCTCCCTTGAGATCGTTTCTTTTG
65 GAAACTAATTTCGTCTCCCTTGAGATCGTTTCTCTTG
* * *
452221 GAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
1 AAACAAAATTTTGTCTCTCTTGAGACAGTTTC-CTTGAAACAAA
452265 TTTTGTCTCC
Statistics
Matches: 136, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
100 86 0.63
101 14 0.10
102 36 0.26
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (101 bp):
AAACAAAATTTTGTCTCTCTTGAGACAGTTTCCTTGAAACAAAATATTTGAATATGTTTTCCTTG
AAACTAATTTCGTCTCCCTTGAGATCGTTTCTCTTG
Found at i:452162 original size:36 final size:35
Alignment explanation
Indices: 452077--452162 Score: 136
Period size: 35 Copynumber: 2.4 Consensus size: 35
452067 TTGAATATGT
*
452077 TTTCCTTGAAACTAATTTCGTCTCCCTTGAGACAG
1 TTTCCTTGAAACAAATTTCGTCTCCCTTGAGACAG
* *
452112 TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTCCTTGAAACAAATTTCGTCTCCCTTGAGACAG
452147 TTTCCCTTGAAACAAA
1 TTT-CCTTGAAACAAA
452163 ATATTTGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
35 35 0.74
36 12 0.26
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (35 bp):
TTTCCTTGAAACAAATTTCGTCTCCCTTGAGACAG
Found at i:452188 original size:65 final size:65
Alignment explanation
Indices: 452112--452364 Score: 271
Period size: 65 Copynumber: 3.8 Consensus size: 65
452102 CTTGAGACAG
*
452112 TTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
1 TTTCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
* ** * ** *
452177 TTTCCTTGAAACTAATTTTGTCTCCCTTGAGATC-GTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCTTGAAACAAATTTTGTCTCCCTTGAGA-CAGTTTCCCTTGAAAC-AA------AATAT-T
*
452241 TGAGACA-G-
57 TGA-ATATGT
452249 TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATG
1 TTTC-CTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATG
452314 T
65 T
* * *
452315 TTTCCTTGAAACTAATTTCGTCTCCCTTGAGACAGTTT-TCTTGAAACAAA
1 TTTCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAA
452365 TTTTGTCTCT
Statistics
Matches: 154, Mismatches: 20, Indels: 29
0.76 0.10 0.14
Matches are distributed among these distances:
64 13 0.08
65 78 0.51
66 9 0.06
72 9 0.06
73 43 0.28
74 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (65 bp):
TTTCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGT
Found at i:452235 original size:37 final size:36
Alignment explanation
Indices: 452177--452297 Score: 165
Period size: 36 Copynumber: 3.4 Consensus size: 36
452167 TTGAATATGT
452177 TTTC-CTTGAAACTAATTTTGTCTCCCTTGAGATC-G
1 TTTCTCTTGAAACTAATTTTGTCTCCCTTGAGA-CAG
* * *
452212 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGAAACTAA-TTTTGTCTCCCTTGAGACAG
*
452249 TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCTCTTGAAACTAATTTTGTCTCCCTTGAGACAG
*
452285 TTTCCCTTGAAAC
1 TTTCTCTTGAAAC
452298 AAAATATTTG
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
35 4 0.05
36 41 0.55
37 30 0.40
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.42
Consensus pattern (36 bp):
TTTCTCTTGAAACTAATTTTGTCTCCCTTGAGACAG
Found at i:452282 original size:138 final size:135
Alignment explanation
Indices: 452075--452400 Score: 519
Period size: 138 Copynumber: 2.4 Consensus size: 135
452065 ATTTGAATAT
* * *
452075 GTTTTCCTTGAAACTAATTTCGTCTCCCTTGAGACAGTTTCCTTGAAACAAATTTTGTCTCTCTT
1 GTTTT-CTTGAAACTAATTTTGTCTCTCTTGAGACAGTTTCCTTGAAACAAATTTTGTCTCCCTT
*
452140 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCCCTT
65 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTCGTCTCCCTT
452205 GAGATC-
130 GAGA-CA
* *
452211 GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCCC
1 GTTT-TCTTGAAACTAA-TTTTGTCTCTCTTGAGACAGTTTC-CTTGAAACAAATTTTGTCTCCC
452276 TTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTCGTCTCCC
63 TTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTCGTCTCCC
452341 TTGAGACA
128 TTGAGACA
* *
452349 GTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCATGAAACAAA
1 GTTTTCTTGAAACTAATTTTGTCTCTCTTGAGACAGTTT-CCTTGAAACAAA
452401 ATATTTGAAT
Statistics
Matches: 175, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
136 46 0.26
137 34 0.19
138 95 0.54
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (135 bp):
GTTTTCTTGAAACTAATTTTGTCTCTCTTGAGACAGTTTCCTTGAAACAAATTTTGTCTCCCTTG
AGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTCGTCTCCCTTG
AGACA
Found at i:452360 original size:35 final size:36
Alignment explanation
Indices: 452313--452553 Score: 182
Period size: 36 Copynumber: 6.9 Consensus size: 36
452303 ATTTGAATAT
*
452313 GTTTTCCTTGAAACTAATTTCGTCTCCCTTGAGACA
1 GTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGACA
* *
452349 GTTTT-CTTGAAACAAATTTTGTCTCTCTTGAGACA
1 GTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGACA
* * * * *
452384 GTTTCCCATGAAACAAA----ATAT---TTGA-ATA
1 GTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGACA
* *
452412 TGTTTTCCTTGAAACTAATTTTGTCTCCCTTGAGATC-
1 -GTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGA-CA
* * * * *
452449 G-TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACA
1 GTTTTC-CTTGAAAC-AAATTTCGTCTCCCTTGAGACA
*
452486 G-TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 GTTTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACA
* * *
452522 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGA
1 GTTTTCCTTGAAACAAATTTCGTCTCCCTTGA
452554 AACAAATTTT
Statistics
Matches: 165, Mismatches: 25, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
28 2 0.01
29 18 0.11
32 2 0.01
33 2 0.01
35 35 0.21
36 73 0.44
37 33 0.20
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
GTTTTCCTTGAAACAAATTTCGTCTCCCTTGAGACA
Found at i:452370 original size:100 final size:101
Alignment explanation
Indices: 452222--452502 Score: 449
Period size: 100 Copynumber: 2.8 Consensus size: 101
452212 TTTCTTTTGG
* *
452222 AACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTT
1 AACTAA-TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTT
452287 TCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGA
65 TCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGA
*
452324 AACTAATTTCGTCTCCCTTGAGACAGTTT-TCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT
1 AACTAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT
*
452388 CCCATGAAACAAAATATTTGAATATGTTTTCCTTGA
66 CCCTTGAAACAAAATATTTGAATATGTTTTCCTTGA
* * *
452424 AACTAATTTTGTCTCCCTTGAGATC-GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGT
1 AACTAATTTTGTCTCCCTTGAGA-CAGTTTCTCTTGAAAC-AAATTTTGTCTCTCTTGAGACAGT
*
452488 TTCTCTTGAAACAAA
64 TTCCCTTGAAACAAA
452503 TTTTGTCTCC
Statistics
Matches: 166, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
100 95 0.57
101 29 0.17
102 42 0.25
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (101 bp):
AACTAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT
CCCTTGAAACAAAATATTTGAATATGTTTTCCTTGA
Found at i:452442 original size:238 final size:238
Alignment explanation
Indices: 452019--452760 Score: 1142
Period size: 238 Copynumber: 3.1 Consensus size: 238
452009 AATTTTCTCA
* *
452019 AAACAAAATTTTGTCTCTCTTGAGACAGTTTCCATTGAAACAAAATATTTGAATATGTTTTCCTT
1 AAAC-AAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTT
*
452084 GAAACTAATTTCGTCTCCCTTGAGACAGTTTCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTT
65 GAAACTAATTTCGTCTCCCTTGAGACAGTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTT
452149 TCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCCCTTGAGATCGTT
130 TCCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCCCTTGAGATCGTT
452214 TCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
195 TCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
452258 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTG
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTG
452323 AAACTAATTTCGTCTCCCTTGAGACAGTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT
66 AAACTAATTTCGTCTCCCTTGAGACAGTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT
*
452388 CCCATGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCCCTTGAGATCGTTT
131 CCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCCCTTGAGATCGTTT
452453 CTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
196 CTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
* *
452496 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC-AAAT-TTTG----T-CTCT-CTTG
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTG
* * * *
452553 AAACAAATTTTGTCTCTCTTGAGACAAATTTTGTCTCTCGTGAAACAAATTTTGTCTCTCTTGAG
66 AAACTAATTTCGTCTCCCTTGAGAC--A-GTT-T-TCT--TGAAACAAATTTTGTCTCTCTTGAG
* * *
452618 ACAAATTTTGTCTCTCTTGAAACAAAATCTTTGAATATGTTTTCCTTGAAACTAATTTCGTCTCC
124 AC--A-GTT-TC-C-CTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCC
* *
452683 CTTGAGA-CAATTTCTTTTAGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
183 CTTGAGATC-GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
*
452739 AAACAAATTTTGTCTCTCTTGA
1 AAACAAATTTTGTCTCCCTTGA
452761 AACAAATTTT
Statistics
Matches: 472, Mismatches: 17, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
230 26 0.06
231 2 0.00
232 2 0.00
233 2 0.00
234 1 0.00
235 3 0.01
236 4 0.01
237 31 0.07
238 270 0.57
239 5 0.01
240 2 0.00
241 2 0.00
242 2 0.00
243 120 0.25
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (238 bp):
AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATGTTTTCCTTG
AAACTAATTTCGTCTCCCTTGAGACAGTTTTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTT
CCCTTGAAACAAAATATTTGAATATGTTTTCCTTGAAACTAATTTTGTCTCCCTTGAGATCGTTT
CTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
Found at i:452516 original size:21 final size:21
Alignment explanation
Indices: 452489--452818 Score: 233
Period size: 21 Copynumber: 16.4 Consensus size: 21
452479 TGAGACAGTT
452489 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
* * *
452510 TCCCTTGAGAC--A-GTT-TC
1 TCTCTTGAAACAAATTTTGTC
452527 -C-CTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
452546 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
*
452567 TCTCTTGAGACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
*
452588 TCTCGTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
*
452609 TCTCTTGAGACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
*
452630 TCTCTTGAAACAAAATCTTTGAATATGT
1 TCTCTTGAAAC-AAAT-TTTG----T-C
* * *
452658 TTTCCTTGAAACTAATTTCGTC
1 TCT-CTTGAAACAAATTTTGTC
* *
452680 TCCCTTGAGAC-AA--TT-TC
1 TCTCTTGAAACAAATTTTGTC
*
452697 T-T-TT-AGAACTAAGTTTTGTC
1 TCTCTTGA-AAC-AAATTTTGTC
* *
452717 TCTCTTGAGAC--A----GTT
1 TCTCTTGAAACAAATTTTGTC
452732 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
452753 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
* *
452774 TCTCTTGAGAC--A-GTT-TC
1 TCTCTTGAAACAAATTTTGTC
452791 -C-CTTGAAACAAAGTTTTGTC
1 TCTCTTGAAACAAA-TTTTGTC
452811 TCTCTTGA
1 TCTCTTGA
452819 GATAGTTTCT
Statistics
Matches: 241, Mismatches: 32, Indels: 71
0.70 0.09 0.21
Matches are distributed among these distances:
14 1 0.00
15 30 0.12
16 2 0.01
17 11 0.05
18 7 0.03
19 8 0.03
20 8 0.03
21 137 0.57
22 14 0.06
23 6 0.02
27 4 0.02
28 5 0.02
29 8 0.03
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (21 bp):
TCTCTTGAAACAAATTTTGTC
Found at i:452517 original size:36 final size:36
Alignment explanation
Indices: 452415--452553 Score: 183
Period size: 36 Copynumber: 3.9 Consensus size: 36
452405 TTGAATATGT
*
452415 TTTC-CTTGAAACTAATTTTGTCTCCCTTGAGATC-G
1 TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGA-CAG
* * * *
452450 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGAAAC-AAATTTTGTCTCCCTTGAGACAG
452487 TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAG
* *
452523 TTTCCCTTGAAACAAATTTTGTCTCTCTTGA
1 TTTCTCTTGAAACAAATTTTGTCTCCCTTGA
452554 AACAAATTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
35 4 0.04
36 57 0.63
37 29 0.32
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAG
Found at i:452724 original size:37 final size:36
Alignment explanation
Indices: 452658--452765 Score: 130
Period size: 37 Copynumber: 3.0 Consensus size: 36
452648 TTGAATATGT
* *
452658 TTTC-CTTGAAACTAATTTCGTCTCCCTTGAGACAA
1 TTTCTCTTGAAACTAATTTTGTCTCTCTTGAGACAA
* *
452693 TTTCT-TTTAGAACTAAGTTTTGTCTCTCTTGAGACAG
1 TTTCTCTTGA-AACTAA-TTTTGTCTCTCTTGAGACAA
* *
452730 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAAACAA
1 TTTCTCTTGAAACTAATTTTGTCTCTCTTGAGACAA
452766 ATTTTGTCTC
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
35 7 0.11
36 24 0.39
37 27 0.44
38 3 0.05
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (36 bp):
TTTCTCTTGAAACTAATTTTGTCTCTCTTGAGACAA
Found at i:452728 original size:207 final size:196
Alignment explanation
Indices: 452449--452904 Score: 587
Period size: 207 Copynumber: 2.3 Consensus size: 196
452439 CCTTGAGATC
* * *
452449 GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCCC
1 GTTTCTCTTGAAACTAA-TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCCC
452514 TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
65 TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAAACAAATTTTGTCTCTCTTGAGAC-
* *
452579 AATTTTGTCTCTCGTGAAACAAA-TTTTGTCTCTCTTGAGACAAATTTTGTCTCTCTTGAAACA-
129 -A-GTT-TC-C-CGTGAAACAAAGTTTTGTCTCTCTTGAG----A--TAGTCTCTCTTGAAACAC
452642 AAATCTTTGAATAT
183 AAATCTTTGAATAT
* * * *
452656 GTTT-TCCTTGAAACTAATTTCGTCTCCCTTGAGACAATTTCT-TTTAGAACTAAGTTTTGTCTC
1 GTTTCT-CTTGAAACTAATTTTGTCTCCCTTGAGACAGTTTCTCTTGA-AAC-AAATTTTGTCTC
* *
452719 TCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAAACAAATTTTGTCTCTCTTGAGA
63 CCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAAACAAATTTTGTCTCTCTTGAGA
* * *
452784 CAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACACCAATCTTTGA
128 CAGTTTCCCGTGAAACAAAGTTTTGTCTCTCTTGAGATAGTCTCTCTTGAAACACAAATCTTTGA
452849 ATAT
193 ATAT
* *
452853 GTTTCTCTTGAAACAAAATTTTGCCTCCCTTGAGACAGTTTCTCTTGAAACA
1 GTTTCTCTTGAAAC-TAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
452905 TAAAAAAACA
Statistics
Matches: 222, Mismatches: 19, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
196 15 0.07
197 26 0.12
198 29 0.13
199 3 0.01
201 10 0.05
202 17 0.08
203 2 0.01
204 2 0.01
205 4 0.02
206 26 0.12
207 88 0.40
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (196 bp):
GTTTCTCTTGAAACTAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCCCT
TGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
TTTCCCGTGAAACAAAGTTTTGTCTCTCTTGAGATAGTCTCTCTTGAAACACAAATCTTTGAATA
T
Found at i:452774 original size:57 final size:58
Alignment explanation
Indices: 452710--452818 Score: 202
Period size: 57 Copynumber: 1.9 Consensus size: 58
452700 TAGAACTAAG
*
452710 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA-TTTTGTCTCTCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAAACAAA
452767 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGA
452819 GATAGTTTCT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
57 35 0.70
58 15 0.30
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (58 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAAACAAA
Found at i:452781 original size:94 final size:92
Alignment explanation
Indices: 452662--452837 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 92
452652 ATATGTTTTC
* * *
452662 CTTGAAACTAATTTCGTCTCCCTTGAGACAATTTCTTTTAGAACTAAGTTTTGTCTCTCTTGAGA
1 CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCTTTT-GAAC-AAGTTTTGTCTCTCTTGAGA
452727 CAGTTTCTCTTGAAACAAATTTTGTCTCT
64 CAGTTTCTCTTGAAACAAATTTTGTCTCT
* **
452756 CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
1 CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCTTTTG-AAC-AAGTTTTGTCTCTCTTGAGA
*
452821 TAGTTTCTCTTGAAACA
64 CAGTTTCTCTTGAAACA
452838 CCAATCTTTG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 1 0.01
94 72 0.99
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.41
Consensus pattern (92 bp):
CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCTTTTGAACAAGTTTTGTCTCTCTTGAGACA
GTTTCTCTTGAAACAAATTTTGTCTCT
Found at i:452798 original size:243 final size:237
Alignment explanation
Indices: 452356--452820 Score: 656
Period size: 243 Copynumber: 1.9 Consensus size: 237
452346 ACAGTTTTCT
452356 TGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCATGAAACAAAATATTTGAATATGTTTTCCT
1 TGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCATGAAACAAAATATTTGAATATGTTTTCCT
* * *
452421 TGAAACTAATTTTGTCTCCCTTGAGATCGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACA
66 TGAAACTAATTTCGTCTCCCTTGAGATCATTTCTTTTAGAACTAAGTTTTGTCTCTCTTGAGACA
* *
452486 GTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCT
131 GTTTCTCTTGAAACAAATTTTGTCTCCCTTGAAACAGTTTCCCTTGAAAC-AATGTTGTCTCTCT
452551 TGAAACAAA-TTTTGTCTCTCTTGAGACAAATTTTGTCTCTCG
195 TGAAACAAAGTTTTGTCTCTCTTGAGACAAATTTTGTCTCTCG
* * *
452593 TGAAACAAATTTTGTCTCTCTTGAGACAAATTTTGTCTCTCTTGAAACAAAATCTTTGAATATGT
1 TGAAACAAATTTTGTCTCTCTTGAGAC--A-GTT-TC-C-CATGAAACAAAATATTTGAATATGT
452658 TTTCCTTGAAACTAATTTCGTCTCCCTTGAGA-CAATTTCTTTTAGAACTAAGTTTTGTCTCTCT
60 TTTCCTTGAAACTAATTTCGTCTCCCTTGAGATC-ATTTCTTTTAGAACTAAGTTTTGTCTCTCT
* * *
452722 TGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAAACAAATTTTGTCTCTCTTGAGAC-A
124 TGAGACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAAAC--A-GTT-TC-C-CTTGAAACAA
452786 -GTT-TC-C-CTTGAAACAAAGTTTTGTCTCTCTTGAGA
183 TGTTGTCTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGA
452821 TAGTTTCTCT
Statistics
Matches: 203, Mismatches: 11, Indels: 21
0.86 0.05 0.09
Matches are distributed among these distances:
237 27 0.13
239 1 0.00
240 2 0.01
241 2 0.01
242 2 0.01
243 133 0.66
244 18 0.09
245 3 0.01
246 4 0.02
247 3 0.01
248 1 0.00
249 7 0.03
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (237 bp):
TGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCATGAAACAAAATATTTGAATATGTTTTCCT
TGAAACTAATTTCGTCTCCCTTGAGATCATTTCTTTTAGAACTAAGTTTTGTCTCTCTTGAGACA
GTTTCTCTTGAAACAAATTTTGTCTCCCTTGAAACAGTTTCCCTTGAAACAATGTTGTCTCTCTT
GAAACAAAGTTTTGTCTCTCTTGAGACAAATTTTGTCTCTCG
Found at i:452814 original size:37 final size:36
Alignment explanation
Indices: 452756--452837 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 36
452746 TTTTGTCTCT
452756 CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCC
1 CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCC
* *
452792 CTTGAAACAAAGTTTTGTCTCTCTTGAGATAGTTTCT
1 CTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCC
452829 CTTGAAACA
1 CTTGAAACA
452838 CCAATCTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
36 11 0.26
37 32 0.74
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (36 bp):
CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCC
Found at i:452947 original size:29 final size:29
Alignment explanation
Indices: 452906--452965 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
452896 CTTGAAACAT
*
452906 AAAAAAACATTTGAAATTGTTTCTCTTGA
1 AAAAAAACATTTGAAAATGTTTCTCTTGA
*
452935 AAAAAAACCTTTGAAAATGTTTCTCTTGA
1 AAAAAAACATTTGAAAATGTTTCTCTTGA
452964 AA
1 AA
452966 CACAATGCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (29 bp):
AAAAAAACATTTGAAAATGTTTCTCTTGA
Found at i:453262 original size:84 final size:85
Alignment explanation
Indices: 453094--453262 Score: 191
Period size: 85 Copynumber: 2.0 Consensus size: 85
453084 AAGGTACATC
* * * * * *
453094 ATTTGCAGCATAACTTAAGGCAAGAAGGGTTATCTGTCATCAAAGACTTTCGAGTTCGATTACAT
1 ATTTACAGCATAACTCAAGGCAAGAAGAGCTATCTGCCAACAAAGACTTTCGAGTTCGATTACAT
*
453159 TCAACTCAGAGGCAAATCAA
66 TCAACTCAGAGGAAAATCAA
* * *
453179 ATTTACAGCATAGCTCAAGGCAATAAGAGCTATCTGCCAACAAA-A-TTGTCGAGTTCGATTCCA
1 ATTTACAGCATAACTCAAGGCAAGAAGAGCTATCTGCCAACAAAGACTT-TCGAGTTCGATTACA
* *
453242 TTCAGCTC-GATGAAACATCAA
65 TTCAACTCAGAGGAAA-ATCAA
453263 TCACATTACT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
83 7 0.10
84 27 0.39
85 36 0.51
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (85 bp):
ATTTACAGCATAACTCAAGGCAAGAAGAGCTATCTGCCAACAAAGACTTTCGAGTTCGATTACAT
TCAACTCAGAGGAAAATCAA
Found at i:453772 original size:37 final size:37
Alignment explanation
Indices: 453731--453842 Score: 197
Period size: 37 Copynumber: 3.0 Consensus size: 37
453721 AACATAACAT
453731 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
* *
453768 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATATGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
*
453805 TAGAGTTCTACTATGATTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
453842 T
1 T
453843 CCAGAAGCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.32
Consensus pattern (37 bp):
TAGAGTTTTACTATGATTCAAACTCCTAAAAATAGGA
Found at i:454444 original size:46 final size:44
Alignment explanation
Indices: 454394--454512 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 44
454384 TTAGATTACA
*
454394 TATATATATATATATATGTTAATTTTTATTATCTGTTTTATTAATT
1 TATATATATATATATATATTAATTTTTATTATCT-TTTTATTAA-T
*
454440 TATATATATATATATATATATACTATTTTT-TTATGTTTTTATTAAT
1 TATATATATATATATATAT-TA--ATTTTTATTATCTTTTTATTAAT
454486 TATATATATATATATATATT-ATTTTTA
1 TATATATATATATATATATTAATTTTTA
454513 CTTTTTTATT
Statistics
Matches: 67, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
42 6 0.09
45 1 0.01
46 38 0.57
47 11 0.16
48 5 0.07
49 6 0.09
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (44 bp):
TATATATATATATATATATTAATTTTTATTATCTTTTTATTAAT
Found at i:454498 original size:40 final size:39
Alignment explanation
Indices: 454438--454527 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 39
454428 GTTTTATTAA
454438 TTTA-TATATATATATATATATATACTATT-TTTTTA-TGTT
1 TTTATTAT-TATATATATATATATA-TATTATTTTTACT-TT
454477 TTTATTAATTATATATATATATATATATTATTTTTACTTT
1 TTTATT-ATTATATATATATATATATATTATTTTTACTTT
454517 TTTATTATTAT
1 TTTATTATTAT
454528 TTTATTTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
39 13 0.28
40 31 0.66
41 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (39 bp):
TTTATTATTATATATATATATATATATTATTTTTACTTT
Found at i:454518 original size:48 final size:47
Alignment explanation
Indices: 454373--454521 Score: 167
Period size: 48 Copynumber: 3.1 Consensus size: 47
454363 TTAGTATATA
* * *
454373 TTTATATTTTT-TTAGATTACATATATATATATATATATGTTAATTTT
1 TTTATATTTTTATTA-ATTATATATATATATATATATATTTTTATTTT
* **
454420 TATTATCTGTTTTATTAATT-TATATATATATATATATATATACTATTTT
1 T-TTATAT-TTTTATTAATTATATATATATATATATATAT-TTTTATTTT
* *
454469 TTTATGTTTTTATTAATTATATATATATATATATATTATTTTTACTTT
1 TTTATATTTTTATTAATTATATATATATATATATA-TATTTTTATTTT
454517 TTTAT
1 TTTAT
454522 TATTATTTTA
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
47 12 0.14
48 55 0.64
49 16 0.19
50 3 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (47 bp):
TTTATATTTTTATTAATTATATATATATATATATATATTTTTATTTT
Found at i:454567 original size:24 final size:23
Alignment explanation
Indices: 454498--454567 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 23
454488 TATATATATA
454498 TATATATTATTTTTACTTTTTTAT
1 TATATATT-TTTTTACTTTTTTAT
*
454522 TAT-TATTTTATTTATTTGTTTTATT
1 TATATATTTT-TTTACTT-TTTTA-T
454547 TATATATTTTTTT-CTTCTTTT
1 TATATATTTTTTTACTT-TTTT
454568 TCTTTATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 2 0.05
23 10 0.26
24 14 0.36
25 7 0.18
26 6 0.15
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.74
Consensus pattern (23 bp):
TATATATTTTTTTACTTTTTTAT
Found at i:454597 original size:29 final size:28
Alignment explanation
Indices: 454527--454597 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
454517 TTTATTATTA
* *
454527 TTTTATTTATTTGTTTTATTTATATATTT
1 TTTTCTTTATTT-TTTTATTTATAAATTT
*
454556 TTTTCTTCT-TTTTCTTTATTTTTAAATTT
1 TTTTCTT-TATTTT-TTTATTTATAAATTT
454585 TTTTCTTTATTTT
1 TTTTCTTTATTTT
454598 ACTTACTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 2 0.06
29 33 0.92
30 1 0.03
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.77
Consensus pattern (28 bp):
TTTTCTTTATTTTTTTATTTATAAATTT
Found at i:464132 original size:20 final size:21
Alignment explanation
Indices: 464107--464158 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
464097 TTTTCCCAAT
*
464107 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
464127 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
464148 TCGCAATGCGA
1 TCGCAATGCGA
464159 TACTTATCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:464211 original size:20 final size:20
Alignment explanation
Indices: 464186--464233 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
464176 TAATACAAAA
464186 TCGCAACGAGATACTGACTT
1 TCGCAACGAGATACTGACTT
* * *
464206 TCGCAACGCGGTTCTGACTT
1 TCGCAACGAGATACTGACTT
464226 TCGCAACG
1 TCGCAACG
464234 CGATTTACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (20 bp):
TCGCAACGAGATACTGACTT
Found at i:464785 original size:20 final size:19
Alignment explanation
Indices: 464757--464823 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
464747 TTCGAGAATG
464757 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
464777 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
* **
464796 AAAATCGCAACGCAAAACC
1 AAAATCGCAACGCGAAATA
464815 AAAATCGCA
1 AAAATCGCA
464824 TTGCGATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 29 0.73
20 11 0.28
ACGTcount: A:0.49, C:0.25, G:0.15, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:464841 original size:19 final size:19
Alignment explanation
Indices: 464819--464970 Score: 170
Period size: 19 Copynumber: 8.1 Consensus size: 19
464809 AAAACCAAAA
*
464819 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
464838 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
464857 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
464876 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
464896 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
464910 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
464929 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
* *
464949 ATCTCGTTGTGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
464969 TC
1 TC
464971 AACCAAAAGA
Statistics
Matches: 114, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
14 10 0.09
16 2 0.02
17 3 0.03
19 50 0.44
20 48 0.42
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:464896 original size:39 final size:38
Alignment explanation
Indices: 464819--464970 Score: 170
Period size: 39 Copynumber: 4.1 Consensus size: 38
464809 AAAACCAAAA
*
464819 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
*
464857 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GTTGCGATTTTCATT
* **
464896 TCGCGTTGCGA--TTC---TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* * *
464929 TCCGCGTTGCGATTCTCATTATCTCGTTGTGATTTTCATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
464969 TC
1 TC
464971 AACCAAAAGA
Statistics
Matches: 96, Mismatches: 10, Indels: 15
0.79 0.08 0.12
Matches are distributed among these distances:
33 14 0.15
34 13 0.14
36 2 0.02
37 2 0.02
38 21 0.22
39 27 0.28
40 17 0.18
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:464928 original size:33 final size:34
Alignment explanation
Indices: 464881--464945 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
464871 TTATTTCGCG
**
464881 GTTGCGATTTTCATTT-CGCGTTGCGATTCTCTC
1 GTTGCGATAGTCATTTCCGCGTTGCGATTCTCTC
464914 GTTGCGATAGTCATTTCCGCGTTGCGATTCTC
1 GTTGCGATAGTCATTTCCGCGTTGCGATTCTC
464946 ATTATCTCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.42
Consensus pattern (34 bp):
GTTGCGATAGTCATTTCCGCGTTGCGATTCTCTC
Found at i:464938 original size:20 final size:19
Alignment explanation
Indices: 464913--464970 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
464903 GCGATTCTCT
**
464913 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTT-CG
* *
464933 CGTTGCGATTCTCATTATCT
1 CGTTGCGATTTTCATT-TCG
*
464953 CGTTGTGATTTTCATTTC
1 CGTTGCGATTTTCATTTC
464971 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
19 2 0.06
20 29 0.91
21 1 0.03
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:467032 original size:42 final size:42
Alignment explanation
Indices: 466972--467094 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
466962 GCCCGACTCG
* * *
466972 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
467014 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
467056 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
467095 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:467052 original size:21 final size:21
Alignment explanation
Indices: 467028--467094 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
467018 TCATTCCTCG
467028 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
467049 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
467070 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
467091 AGAG
1 AGAG
467095 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:468469 original size:13 final size:14
Alignment explanation
Indices: 468453--468487 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
468443 ATTGTTTAAT
468453 TGATTTGT-AAAGG
1 TGATTTGTAAAAGG
*
468466 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
468480 TGATTTGT
1 TGATTTGT
468488 TTAATTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.46
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:468495 original size:13 final size:14
Alignment explanation
Indices: 468440--468488 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
468430 TGCTTATTTT
*
468440 TTGA-TTGTTTAA-
1 TTGATTTGTTAAAG
468452 TTGATTTG-TAAAG
1 TTGATTTGTTAAAG
* *
468465 GTGATTTGTAAAAG
1 TTGATTTGTTAAAG
468479 TTGATTTGTT
1 TTGATTTGTT
468489 TAATTGATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 7 0.24
13 10 0.34
14 12 0.41
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (14 bp):
TTGATTTGTTAAAG
Found at i:468694 original size:19 final size:19
Alignment explanation
Indices: 468672--468763 Score: 69
Period size: 19 Copynumber: 5.4 Consensus size: 19
468662 TAAATTCGCG
468672 TTGCGATTTTCATTTCTCA
1 TTGCGATTTTCATTTCTCA
* *
468691 TTGCGA--TTC---CCTCG
1 TTGCGATTTTCATTTCTCA
*
468705 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCTCA
*
468724 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCTCA
*
468738 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCTCA
468757 TTGCGAT
1 TTGCGAT
468764 AGTAATTTCC
Statistics
Matches: 54, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
14 18 0.33
16 6 0.11
17 6 0.11
19 24 0.44
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCTCA
Found at i:468712 original size:33 final size:33
Alignment explanation
Indices: 468670--468763 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
468660 ATTAAATTCG
*
468670 CGTTGCGATTTTCATTTCTCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
468703 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
468736 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
468764 AGTAATTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:471069 original size:12 final size:12
Alignment explanation
Indices: 471054--471078 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
471044 TTTTCGGGGA
471054 CTTTTTCTTCTT
1 CTTTTTCTTCTT
471066 CTTTTTCTTCTT
1 CTTTTTCTTCTT
471078 C
1 C
471079 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:471287 original size:24 final size:24
Alignment explanation
Indices: 471253--471306 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
471243 CTGAAACATC
* *
471253 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
471277 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
471301 ATCAAA
1 ATCAAA
471307 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:472391 original size:20 final size:20
Alignment explanation
Indices: 472366--472461 Score: 165
Period size: 20 Copynumber: 4.8 Consensus size: 20
472356 ATTCATTTGA
472366 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
472386 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
472406 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
472426 TTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
472446 TTATCGCAACGAGAAA
1 CTATCGCAACGCGAAA
472462 TTCGCATTGC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 74 1.00
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:472614 original size:14 final size:14
Alignment explanation
Indices: 472595--472631 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
472585 CGTCAATTAA
472595 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
472609 ACAAATCATCTTTT
1 ACAAATCAACATTT
472623 ACAAATCAA
1 ACAAATCAA
472632 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:474503 original size:20 final size:18
Alignment explanation
Indices: 474478--474522 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
474468 TAGTTTACTT
474478 TCGCAACACGAAACTTAAAA
1 TCGCAACACGAAA--TAAAA
* *
474498 TCGCAACGCGAAATGAAA
1 TCGCAACACGAAATAAAA
474516 TCGCAAC
1 TCGCAAC
474523 GACAAAATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
20 12 0.52
ACGTcount: A:0.44, C:0.27, G:0.16, T:0.13
Consensus pattern (18 bp):
TCGCAACACGAAATAAAA
Found at i:474518 original size:18 final size:16
Alignment explanation
Indices: 474494--474542 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 16
474484 CACGAAACTT
474494 AAAATCGCAACGCGAA
1 AAAATCGCAACGCGAA
*
474510 ATGAAATCGCAA--CGAC
1 A--AAATCGCAACGCGAA
474526 AAAATCGCAACGCGAA
1 AAAATCGCAACGCGAA
474542 A
1 A
474543 CACAAATCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 9 0.33
16 9 0.33
18 9 0.33
ACGTcount: A:0.49, C:0.24, G:0.18, T:0.08
Consensus pattern (16 bp):
AAAATCGCAACGCGAA
Found at i:474590 original size:14 final size:14
Alignment explanation
Indices: 474571--474628 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
474561 TTTCATTTCA
*
474571 CGTTGCGATTTGGT
1 CGTTGCGATTTTGT
*
474585 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
474601 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
474617 CGTTGCGATTTT
1 CGTTGCGATTTT
474629 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 21 0.57
16 7 0.19
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.26, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:474635 original size:33 final size:33
Alignment explanation
Indices: 474554--474644 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
474544 ACAAATCGCA
* *
474554 TTGCGATTTTCATTTCACGTTGCGATTTGGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTGGTCG
*
474587 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTGGTCG
474619 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
474645 AGCCATTTCA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 29 0.54
33 25 0.46
ACGTcount: A:0.13, C:0.19, G:0.22, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTGGTCG
Found at i:474683 original size:20 final size:20
Alignment explanation
Indices: 474629--474672 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
474619 TTGCGATTTT
*
474629 CATTTC-GCATTGCGATAGC
1 CATTTCAGCGTTGCGATAGC
*
474648 CATTTCAGCGTTGCGATAGT
1 CATTTCAGCGTTGCGATAGC
474668 CATTT
1 CATTT
474673 TCGTGTTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (20 bp):
CATTTCAGCGTTGCGATAGC
Found at i:475191 original size:18 final size:18
Alignment explanation
Indices: 475165--475209 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
475155 GTCGATCAGA
* *
475165 TGATGGCTCTGGGTGATG
1 TGATGGCTCTGGGCGAGG
*
475183 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
475201 TGATGGCTC
1 TGATGGCTC
475210 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.16, G:0.42, T:0.29
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:476554 original size:20 final size:20
Alignment explanation
Indices: 476529--476566 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
476519 AATAGTTTCT
476529 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
476549 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
476567 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:476857 original size:22 final size:22
Alignment explanation
Indices: 476830--476873 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
476820 GATGGAGATA
476830 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
476852 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
476874 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:477071 original size:21 final size:22
Alignment explanation
Indices: 477041--477136 Score: 69
Period size: 20 Copynumber: 4.6 Consensus size: 22
477031 CGCTTTGAAA
*
477041 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGATTATGTAAGT
* *
477062 ATCGCGTTGCGA--AAGTAAGT
1 ATCGCATTGCGATTATGTAAGT
* * * * *
477082 ATCTCGTTGCGATT-TTTTATT
1 ATCGCATTGCGATTATGTAAGT
*
477103 ATCGCATTGCGA-TA-GTCAGT
1 ATCGCATTGCGATTATGTAAGT
477123 ATCGCATTGCGATT
1 ATCGCATTGCGATT
477137 TTCCCAATTC
Statistics
Matches: 57, Mismatches: 13, Indels: 10
0.71 0.16 0.12
Matches are distributed among these distances:
19 3 0.05
20 29 0.51
21 25 0.44
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (22 bp):
ATCGCATTGCGATTATGTAAGT
Found at i:477104 original size:41 final size:41
Alignment explanation
Indices: 477041--477138 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
477031 CGCTTTGAAA
* *
477041 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGT
* * * * *
477082 ATCTCGTTGCGATTTTTTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGT
477123 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
477139 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.40
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGT
Found at i:477153 original size:21 final size:21
Alignment explanation
Indices: 477124--477216 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
477114 ATAGTCAGTA
477124 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
477145 TCGCTTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
477165 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
477186 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
477206 TCGCATTGCGA
1 TCGCATTGCGA
477217 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:477154 original size:41 final size:41
Alignment explanation
Indices: 477104--477216 Score: 140
Period size: 41 Copynumber: 2.8 Consensus size: 41
477094 TTTTTTATTA
477104 TCGCATTGCGATAGTCA-GTA-TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGAT--TCACGTATTCGCATTGCGATTTTCCCAAT
* * *
477145 TCGCTTTGCGATTTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTCACGTATTCGCATTGCGATTTTCCCAAT
* * *
477186 TCGCGTTGCGATTTACTTATTCGCATTGCGA
1 TCGCATTGCGATTCACGTATTCGCATTGCGA
477217 ATTGGGAAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.03
40 2 0.03
41 62 0.94
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.39
Consensus pattern (41 bp):
TCGCATTGCGATTCACGTATTCGCATTGCGATTTTCCCAAT
Found at i:480842 original size:27 final size:27
Alignment explanation
Indices: 480812--480867 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
480802 GGGAGTGGAG
*
480812 AGCCACGTTACTAACTATCAATGTTTA
1 AGCCACATTACTAACTATCAATGTTTA
*
480839 AGCCACATTATTAACTATCAATGTTTA
1 AGCCACATTACTAACTATCAATGTTTA
480866 AG
1 AG
480868 TAGACATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (27 bp):
AGCCACATTACTAACTATCAATGTTTA
Found at i:481855 original size:32 final size:32
Alignment explanation
Indices: 481813--481986 Score: 122
Period size: 32 Copynumber: 5.3 Consensus size: 32
481803 TATACTTATG
* *
481813 TATACATTATAAGTGTGTAATATAAGTATACAT
1 TATAC-TTATAAGTATGTAATATAAATATACAT
* *
481846 TATACTTATAAGTATATAATATAAATATATAT
1 TATACTTATAAGTATGTAATATAAATATACAT
* * **
481878 TATATTTATAAGTATGTATATATATATATATGT
1 TATACTTATAAGTATGTA-ATATAAATATACAT
* * *
481911 TATA-TATATACA-TA-ATATATATAATTATACTT
1 TATACT-TATA-AGTATGTA-ATATAAATATACAT
* * *
481943 TATACTTATAAGTGTATATATATATAATATA-AG
1 TATACTTATAAGTATGTA-ATATA-AATATACAT
481976 TATACATTATA
1 TATAC-TTATA
481987 TTTATAATGT
Statistics
Matches: 116, Mismatches: 17, Indels: 15
0.78 0.11 0.10
Matches are distributed among these distances:
31 1 0.01
32 62 0.53
33 42 0.36
34 11 0.09
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (32 bp):
TATACTTATAAGTATGTAATATAAATATACAT
Found at i:481875 original size:2 final size:2
Alignment explanation
Indices: 481858--482212 Score: 69
Period size: 2 Copynumber: 182.5 Consensus size: 2
481848 TACTTATAAG
* * *
481858 TA TA TA -A TA TA AA TA TA TA T- TA TA TT TA TA -A GTA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* *
481898 TA TA TA TA TA TG T- TA TA TA TA TA CA TA -A TA TA TA TA -A T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
481936 TA TA CTT TA TA CT- TA TA -A GTG TA TA TA TA TA TA -A TA TA -A
1 TA TA -TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* * * *
481975 GTA TA CA T- TA TA TT TA TA -A TG TA TA CA T- TA TA CT- TA -A TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
482014 -A GTA TA TG TA TA TA AA CT- TT TA TA TA TA TA AA TA TA TA CT-
1 TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA
* * * * * * *
482054 TA TG CA TA TG TA TA CT- TA TA TA TA TA -A T- TA CA TA CA CA CA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
482094 CA TA TA TA -A GTA TA TA TA AA TA TA TA TA -A GTA TA AA GTA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA
* ** * * *
482135 TA TA CA TA GG TA TA TA TA -A GTA TA TA TG TA TGA TG CA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA T-A TA TA TA TA TA
** * *
482177 GTA TA CC CA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
482213 CATTAAACAT
Statistics
Matches: 253, Mismatches: 58, Indels: 84
0.64 0.15 0.21
Matches are distributed among these distances:
1 26 0.10
2 212 0.84
3 15 0.06
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (2 bp):
TA
Found at i:481914 original size:65 final size:64
Alignment explanation
Indices: 481813--481968 Score: 155
Period size: 65 Copynumber: 2.4 Consensus size: 64
481803 TATACTTATG
481813 TATACATTATAAGTGTGTA-ATATA-AGTATACATTATACT-TATA-AGT-ATATAATATAAATA
1 TATAC-TTATAAGT-TGTATATATATA-TATACATTATA-TATATACA-TAATAT-ATATAAATA
481873 TA-TAT
60 TACT-T
* ** *
481878 TATATTTATAAGTATGTATATATATATATATGTTATATATATACATAATATATATAATTATACTT
1 TATACTTATAAGT-TGTATATATATATATACATTATATATATACATAATATATATAAATATACTT
481943 TATACTTATAAG-TGTATATATATATA
1 TATACTTATAAGTTGTATATATATATA
481969 ATATAAGTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
63 14 0.18
64 13 0.16
65 45 0.57
66 7 0.09
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (64 bp):
TATACTTATAAGTTGTATATATATATATACATTATATATATACATAATATATATAAATATACTT
Found at i:481961 original size:59 final size:61
Alignment explanation
Indices: 481896--482027 Score: 171
Period size: 59 Copynumber: 2.2 Consensus size: 61
481886 TAAGTATGTA
** *
481896 TATATATATATATGTTATATA-TATACATAATATATATAAT-TATACTTTATACTT-ATAAG
1 TATATATATATATAATATA-AGTATACATAATATATATAATGTATACATTATACTTAATAAG
* * *
481955 TGTATATATATATAATATAAGTATACATTATATTTATAATGTATACATTATACTTAATAAG
1 TATATATATATATAATATAAGTATACATAATATATATAATGTATACATTATACTTAATAAG
*
482016 TATATGTATATA
1 TATATATATATA
482028 AACTTTTATA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 1 0.02
59 33 0.53
60 13 0.21
61 15 0.24
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (61 bp):
TATATATATATATAATATAAGTATACATAATATATATAATGTATACATTATACTTAATAAG
Found at i:482019 original size:40 final size:40
Alignment explanation
Indices: 481917--482006 Score: 114
Period size: 40 Copynumber: 2.3 Consensus size: 40
481907 ATGTTATATA
* *
481917 TATACATA-ATATATATAATTATACTTTATACTTATAAGTG
1 TATACATATATA-ATATAAGTATACATTATACTTATAAGTG
* *
481957 TATATATATATAATATAAGTATACATTATATTTATAA-TG
1 TATACATATATAATATAAGTATACATTATACTTATAAGTG
481996 TATACAT-TATA
1 TATACATATATA
482007 CTTAATAAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
38 4 0.09
39 8 0.18
40 29 0.66
41 3 0.07
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (40 bp):
TATACATATATAATATAAGTATACATTATACTTATAAGTG
Found at i:482879 original size:2 final size:2
Alignment explanation
Indices: 482872--482913 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
482862 TTCTCATGCC
482872 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
482914 TATTTTAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:483021 original size:24 final size:24
Alignment explanation
Indices: 482980--483025 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
482970 TATTTTTATA
482980 TATATTTTAAAGTTTTAAGTTAAAT
1 TATATTTTAAAGTTTTAA-TTAAAT
483005 TATA-TTTAAA-TTATTAATTAA
1 TATATTTTAAAGTT-TTAATTAA
483026 TTAATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (24 bp):
TATATTTTAAAGTTTTAATTAAAT
Found at i:483141 original size:13 final size:12
Alignment explanation
Indices: 483125--483168 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 12
483115 TGAAATTAAT
483125 TTAATGATTATAA
1 TTAA-GATTATAA
483138 TTAAGATTTATAA
1 TTAAGA-TTATAA
483151 TATAAGAATTATAA
1 T-TAAG-ATTATAA
483165 TTAA
1 TTAA
483169 TATAGAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.07
13 14 0.50
14 11 0.39
15 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (12 bp):
TTAAGATTATAA
Found at i:483281 original size:78 final size:78
Alignment explanation
Indices: 483193--483337 Score: 263
Period size: 78 Copynumber: 1.9 Consensus size: 78
483183 TTATTAATTT
* *
483193 AATTATCATAACTAACAATTTGTTTTAAGTTTTAAAGAGTAATCATATTAATTATCATAGTTTAT
1 AATTATCATAACTAACAATTTGTTTTAAATTTTAAAAAGTAATCATATTAATTATCATAGTTTAT
483258 TTAATTGTCCAAA
66 TTAATTGTCCAAA
*
483271 AATTATCATAATTAACAATTTGTTTTAAATTTTAAAAAGTAATCATATTAATTATCATAGTTTAT
1 AATTATCATAACTAACAATTTGTTTTAAATTTTAAAAAGTAATCATATTAATTATCATAGTTTAT
483336 TT
66 TT
483338 TAAATTCAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.46
Consensus pattern (78 bp):
AATTATCATAACTAACAATTTGTTTTAAATTTTAAAAAGTAATCATATTAATTATCATAGTTTAT
TTAATTGTCCAAA
Found at i:483316 original size:37 final size:37
Alignment explanation
Indices: 483197--483321 Score: 96
Period size: 37 Copynumber: 3.3 Consensus size: 37
483187 TAATTTAATT
* * *
483197 ATCATAACTAACAATTTGTTTTAAGTTTTAAAGAGTA
1 ATCATAATTAACAATTTGTTTTAAATTTTAAAAAGTA
* * * *
483234 ATCATATTAATTATCATAGTTT-ATTT-AATTGTCCAAAAA-TT
1 ATC--A-TAATTAACA-A-TTTGTTTTAAATT-T-TAAAAAGTA
483275 ATCATAATTAACAATTTGTTTTAAATTTTAAAAAGTA
1 ATCATAATTAACAATTTGTTTTAAATTTTAAAAAGTA
483312 ATCAT-ATTAA
1 ATCATAATTAA
483322 TTATCATAGT
Statistics
Matches: 67, Mismatches: 11, Indels: 21
0.68 0.11 0.21
Matches are distributed among these distances:
36 13 0.19
37 14 0.21
38 12 0.18
39 2 0.03
40 10 0.15
41 9 0.13
42 7 0.10
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.43
Consensus pattern (37 bp):
ATCATAATTAACAATTTGTTTTAAATTTTAAAAAGTA
Done.